ncbi-datasets-pyclient 18.4.0__py3-none-any.whl → 18.13.0__py3-none-any.whl

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Files changed (302) hide show
  1. ncbi/datasets/openapi/__init__.py +603 -250
  2. ncbi/datasets/openapi/api/bio_sample_api.py +1 -2
  3. ncbi/datasets/openapi/api/gene_api.py +1331 -1011
  4. ncbi/datasets/openapi/api/genome_api.py +1129 -1303
  5. ncbi/datasets/openapi/api/organelle_api.py +1 -2
  6. ncbi/datasets/openapi/api/prokaryote_api.py +31 -32
  7. ncbi/datasets/openapi/api/taxonomy_api.py +105 -106
  8. ncbi/datasets/openapi/api/version_api.py +1 -2
  9. ncbi/datasets/openapi/api/virus_api.py +772 -830
  10. ncbi/datasets/openapi/api_client.py +14 -8
  11. ncbi/datasets/openapi/configuration.py +8 -9
  12. ncbi/datasets/openapi/exceptions.py +1 -2
  13. ncbi/datasets/openapi/models/__init__.py +53 -3
  14. ncbi/datasets/openapi/models/ncbiprotddv2_chain_footprint.py +93 -0
  15. ncbi/datasets/openapi/models/ncbiprotddv2_query_structure_definition.py +97 -0
  16. ncbi/datasets/openapi/models/ncbiprotddv2_redundancy_level.py +39 -0
  17. ncbi/datasets/openapi/models/ncbiprotddv2_sdid_request.py +87 -0
  18. ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_report.py +121 -0
  19. ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_report_page.py +99 -0
  20. ncbi/datasets/openapi/models/ncbiprotddv2_similar_structure_request.py +97 -0
  21. ncbi/datasets/openapi/models/ncbiprotddv2_sort_by_id.py +51 -0
  22. ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report.py +141 -0
  23. ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report_biounit_chain.py +94 -0
  24. ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report_experiment.py +89 -0
  25. ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report_kind.py +42 -0
  26. ncbi/datasets/openapi/models/ncbiprotddv2_structure_data_report_ligand_chain.py +94 -0
  27. ncbi/datasets/openapi/models/ncbiprotddv2_structure_request.py +89 -0
  28. ncbi/datasets/openapi/models/ncbiprotddv2_vast_score.py +95 -0
  29. ncbi/datasets/openapi/models/protobuf_any.py +1 -2
  30. ncbi/datasets/openapi/models/rpc_status.py +1 -2
  31. ncbi/datasets/openapi/models/v2_accessions.py +87 -0
  32. ncbi/datasets/openapi/models/v2_annotation_for_assembly_type.py +2 -3
  33. ncbi/datasets/openapi/models/v2_annotation_for_organelle_type.py +2 -2
  34. ncbi/datasets/openapi/models/v2_assembly_accessions.py +1 -2
  35. ncbi/datasets/openapi/models/v2_assembly_check_m_histogram_reply.py +1 -2
  36. ncbi/datasets/openapi/models/v2_assembly_check_m_histogram_reply_histogram_interval.py +1 -2
  37. ncbi/datasets/openapi/models/v2_assembly_check_m_histogram_request.py +1 -2
  38. ncbi/datasets/openapi/models/v2_assembly_data_report_draft_request.py +87 -0
  39. ncbi/datasets/openapi/models/v2_assembly_dataset_availability.py +1 -2
  40. ncbi/datasets/openapi/models/v2_assembly_dataset_descriptors_filter.py +9 -10
  41. ncbi/datasets/openapi/models/v2_assembly_dataset_descriptors_filter_assembly_source.py +1 -2
  42. ncbi/datasets/openapi/models/v2_assembly_dataset_descriptors_filter_assembly_version.py +1 -2
  43. ncbi/datasets/openapi/models/v2_assembly_dataset_descriptors_filter_metagenome_derived_filter.py +1 -2
  44. ncbi/datasets/openapi/models/v2_assembly_dataset_descriptors_filter_type_material_category.py +1 -2
  45. ncbi/datasets/openapi/models/v2_assembly_dataset_reports_request.py +5 -6
  46. ncbi/datasets/openapi/models/v2_assembly_dataset_reports_request_content_type.py +1 -2
  47. ncbi/datasets/openapi/models/v2_assembly_dataset_request.py +3 -4
  48. ncbi/datasets/openapi/models/v2_assembly_dataset_request_resolution.py +1 -2
  49. ncbi/datasets/openapi/models/v2_assembly_links_reply.py +1 -2
  50. ncbi/datasets/openapi/models/v2_assembly_links_reply_assembly_link.py +3 -4
  51. ncbi/datasets/openapi/models/v2_assembly_links_reply_assembly_link_type.py +3 -3
  52. ncbi/datasets/openapi/models/v2_assembly_links_request.py +1 -2
  53. ncbi/datasets/openapi/models/v2_assembly_revision_history.py +1 -2
  54. ncbi/datasets/openapi/models/v2_assembly_revision_history_request.py +1 -2
  55. ncbi/datasets/openapi/models/v2_assembly_sequence_reports_request.py +3 -4
  56. ncbi/datasets/openapi/models/v2_bio_sample_dataset_reports_request.py +87 -0
  57. ncbi/datasets/openapi/models/v2_catalog_api_version.py +38 -0
  58. ncbi/datasets/openapi/models/v2_dataset_request.py +1 -2
  59. ncbi/datasets/openapi/models/v2_download_summary.py +1 -2
  60. ncbi/datasets/openapi/models/v2_download_summary_available_files.py +1 -2
  61. ncbi/datasets/openapi/models/v2_download_summary_dehydrated.py +1 -2
  62. ncbi/datasets/openapi/models/v2_download_summary_file_summary.py +1 -2
  63. ncbi/datasets/openapi/models/v2_download_summary_hydrated.py +1 -2
  64. ncbi/datasets/openapi/models/v2_element_flank_config.py +87 -0
  65. ncbi/datasets/openapi/models/v2_fasta.py +1 -2
  66. ncbi/datasets/openapi/models/v2_file_file_type.py +57 -0
  67. ncbi/datasets/openapi/models/v2_gene_chromosome_summary_reply.py +1 -2
  68. ncbi/datasets/openapi/models/v2_gene_chromosome_summary_reply_gene_chromosome_summary.py +1 -2
  69. ncbi/datasets/openapi/models/v2_gene_chromosome_summary_request.py +89 -0
  70. ncbi/datasets/openapi/models/v2_gene_counts_by_taxon_reply.py +1 -2
  71. ncbi/datasets/openapi/models/v2_gene_counts_by_taxon_reply_gene_type_and_count.py +1 -2
  72. ncbi/datasets/openapi/models/v2_gene_counts_by_taxon_request.py +1 -2
  73. ncbi/datasets/openapi/models/v2_gene_dataset_reports_request.py +20 -9
  74. ncbi/datasets/openapi/models/v2_gene_dataset_reports_request_content_type.py +1 -3
  75. ncbi/datasets/openapi/models/v2_gene_dataset_reports_request_symbols_for_taxon.py +1 -2
  76. ncbi/datasets/openapi/models/v2_gene_dataset_request.py +5 -6
  77. ncbi/datasets/openapi/models/v2_gene_dataset_request_content_type.py +1 -2
  78. ncbi/datasets/openapi/models/v2_gene_dataset_request_gene_dataset_report_type.py +1 -2
  79. ncbi/datasets/openapi/models/v2_gene_links_reply.py +1 -2
  80. ncbi/datasets/openapi/models/v2_gene_links_reply_gene_link.py +3 -4
  81. ncbi/datasets/openapi/models/v2_gene_links_reply_gene_link_type.py +2 -2
  82. ncbi/datasets/openapi/models/v2_gene_links_request.py +1 -2
  83. ncbi/datasets/openapi/models/v2_gene_pubmed_ids_request.py +87 -0
  84. ncbi/datasets/openapi/models/v2_gene_pubmed_ids_response.py +87 -0
  85. ncbi/datasets/openapi/models/v2_gene_type.py +1 -2
  86. ncbi/datasets/openapi/models/v2_genome_annotation_request.py +5 -6
  87. ncbi/datasets/openapi/models/v2_genome_annotation_request_annotation_type.py +2 -2
  88. ncbi/datasets/openapi/models/v2_genome_annotation_request_genome_annotation_table_format.py +1 -2
  89. ncbi/datasets/openapi/models/v2_genome_annotation_table_summary_reply.py +1 -2
  90. ncbi/datasets/openapi/models/v2_http_body.py +1 -2
  91. ncbi/datasets/openapi/models/v2_image_size.py +1 -2
  92. ncbi/datasets/openapi/models/v2_include_tabular_header.py +1 -2
  93. ncbi/datasets/openapi/models/v2_micro_bigge_dataset_request.py +96 -0
  94. ncbi/datasets/openapi/models/v2_micro_bigge_dataset_request_file_type.py +39 -0
  95. ncbi/datasets/openapi/models/v2_mol_type.py +40 -0
  96. ncbi/datasets/openapi/models/v2_organelle_download_request.py +1 -2
  97. ncbi/datasets/openapi/models/v2_organelle_metadata_request.py +7 -8
  98. ncbi/datasets/openapi/models/v2_organelle_metadata_request_content_type.py +1 -2
  99. ncbi/datasets/openapi/models/v2_organelle_metadata_request_organelle_table_format.py +1 -2
  100. ncbi/datasets/openapi/models/v2_organelle_sort.py +3 -4
  101. ncbi/datasets/openapi/models/v2_organism_query_request.py +5 -6
  102. ncbi/datasets/openapi/models/v2_organism_query_request_tax_rank_filter.py +1 -2
  103. ncbi/datasets/openapi/models/v2_organism_query_request_taxon_resource_filter.py +1 -2
  104. ncbi/datasets/openapi/models/v2_ortholog_request.py +3 -4
  105. ncbi/datasets/openapi/models/v2_ortholog_request_content_type.py +1 -2
  106. ncbi/datasets/openapi/models/v2_prokaryote_gene_request.py +1 -2
  107. ncbi/datasets/openapi/models/v2_prokaryote_gene_request_gene_flank_config.py +1 -2
  108. ncbi/datasets/openapi/models/v2_ref_gene_catalog_dataset_request.py +96 -0
  109. ncbi/datasets/openapi/models/v2_ref_gene_catalog_dataset_request_file_type.py +38 -0
  110. ncbi/datasets/openapi/models/v2_sars2_protein_dataset_request.py +3 -4
  111. ncbi/datasets/openapi/models/v2_sci_name_and_ids.py +1 -2
  112. ncbi/datasets/openapi/models/v2_sci_name_and_ids_sci_name_and_id.py +3 -4
  113. ncbi/datasets/openapi/models/v2_seq_range.py +94 -0
  114. ncbi/datasets/openapi/models/v2_seq_reply.py +96 -0
  115. ncbi/datasets/openapi/models/v2_sequence_accession_request.py +1 -2
  116. ncbi/datasets/openapi/models/v2_sequence_report_page.py +1 -2
  117. ncbi/datasets/openapi/models/v2_sleep_reply.py +87 -0
  118. ncbi/datasets/openapi/models/v2_sleep_request.py +89 -0
  119. ncbi/datasets/openapi/models/v2_sort_direction.py +1 -2
  120. ncbi/datasets/openapi/models/v2_sort_field.py +3 -4
  121. ncbi/datasets/openapi/models/v2_table_format.py +1 -2
  122. ncbi/datasets/openapi/models/v2_tabular_output.py +1 -2
  123. ncbi/datasets/openapi/models/v2_taxonomy_dataset_request.py +1 -2
  124. ncbi/datasets/openapi/models/v2_taxonomy_dataset_request_taxonomy_report_type.py +1 -2
  125. ncbi/datasets/openapi/models/v2_taxonomy_filtered_subtree_request.py +5 -4
  126. ncbi/datasets/openapi/models/v2_taxonomy_filtered_subtree_response.py +1 -2
  127. ncbi/datasets/openapi/models/v2_taxonomy_filtered_subtree_response_edge.py +3 -4
  128. ncbi/datasets/openapi/models/v2_taxonomy_filtered_subtree_response_edge_child_status.py +2 -2
  129. ncbi/datasets/openapi/models/v2_taxonomy_filtered_subtree_response_edges_entry.py +1 -2
  130. ncbi/datasets/openapi/models/v2_taxonomy_image_metadata_request.py +1 -2
  131. ncbi/datasets/openapi/models/v2_taxonomy_image_metadata_response.py +1 -2
  132. ncbi/datasets/openapi/models/v2_taxonomy_image_request.py +3 -4
  133. ncbi/datasets/openapi/models/v2_taxonomy_links_request.py +1 -2
  134. ncbi/datasets/openapi/models/v2_taxonomy_links_response.py +1 -2
  135. ncbi/datasets/openapi/models/v2_taxonomy_links_response_generic_link.py +1 -2
  136. ncbi/datasets/openapi/models/v2_taxonomy_match.py +1 -2
  137. ncbi/datasets/openapi/models/v2_taxonomy_metadata_request.py +7 -8
  138. ncbi/datasets/openapi/models/v2_taxonomy_metadata_request_content_type.py +1 -2
  139. ncbi/datasets/openapi/models/v2_taxonomy_metadata_request_table_format.py +1 -2
  140. ncbi/datasets/openapi/models/v2_taxonomy_metadata_response.py +1 -2
  141. ncbi/datasets/openapi/models/v2_taxonomy_node.py +3 -4
  142. ncbi/datasets/openapi/models/v2_taxonomy_node_count_by_type.py +3 -4
  143. ncbi/datasets/openapi/models/v2_taxonomy_related_id_request.py +1 -2
  144. ncbi/datasets/openapi/models/v2_taxonomy_tax_ids_page.py +1 -2
  145. ncbi/datasets/openapi/models/v2_version_reply.py +1 -2
  146. ncbi/datasets/openapi/models/v2_viral_sequence_type.py +1 -2
  147. ncbi/datasets/openapi/models/v2_virus_annotation_filter.py +1 -2
  148. ncbi/datasets/openapi/models/v2_virus_annotation_report_request.py +1 -2
  149. ncbi/datasets/openapi/models/v2_virus_availability.py +1 -2
  150. ncbi/datasets/openapi/models/v2_virus_availability_request.py +1 -2
  151. ncbi/datasets/openapi/models/v2_virus_data_report_request.py +3 -4
  152. ncbi/datasets/openapi/models/v2_virus_data_report_request_content_type.py +1 -2
  153. ncbi/datasets/openapi/models/v2_virus_dataset_filter.py +1 -2
  154. ncbi/datasets/openapi/models/v2_virus_dataset_report_type.py +1 -2
  155. ncbi/datasets/openapi/models/v2_virus_dataset_request.py +3 -4
  156. ncbi/datasets/openapi/models/v2_virus_table_field.py +1 -2
  157. ncbi/datasets/openapi/models/v2archive_affiliation.py +95 -0
  158. ncbi/datasets/openapi/models/v2archive_catalog.py +121 -0
  159. ncbi/datasets/openapi/models/v2archive_location.py +95 -0
  160. ncbi/datasets/openapi/models/v2archive_modifier.py +90 -0
  161. ncbi/datasets/openapi/models/v2archive_molecule_type.py +43 -0
  162. ncbi/datasets/openapi/models/v2archive_name.py +105 -0
  163. ncbi/datasets/openapi/models/v2archive_nuccore_request.py +87 -0
  164. ncbi/datasets/openapi/models/v2archive_sequence.py +90 -0
  165. ncbi/datasets/openapi/models/v2archive_sequence_length_units.py +39 -0
  166. ncbi/datasets/openapi/models/v2archive_submitter.py +105 -0
  167. ncbi/datasets/openapi/models/v2archive_taxonomy_node.py +118 -0
  168. ncbi/datasets/openapi/models/v2archive_taxonomy_subtype.py +77 -0
  169. ncbi/datasets/openapi/models/v2reports_additional_submitter.py +1 -2
  170. ncbi/datasets/openapi/models/v2reports_ani_match.py +3 -4
  171. ncbi/datasets/openapi/models/v2reports_ani_type_category.py +2 -3
  172. ncbi/datasets/openapi/models/v2reports_annotation.py +1 -2
  173. ncbi/datasets/openapi/models/v2reports_annotation_info.py +1 -2
  174. ncbi/datasets/openapi/models/v2reports_assembly_data_report.py +3 -4
  175. ncbi/datasets/openapi/models/v2reports_assembly_data_report_page.py +3 -4
  176. ncbi/datasets/openapi/models/v2reports_assembly_info.py +5 -6
  177. ncbi/datasets/openapi/models/v2reports_assembly_level.py +1 -2
  178. ncbi/datasets/openapi/models/v2reports_assembly_revision.py +8 -7
  179. ncbi/datasets/openapi/models/v2reports_assembly_stats.py +4 -3
  180. ncbi/datasets/openapi/models/v2reports_assembly_status.py +1 -2
  181. ncbi/datasets/openapi/models/v2reports_atypical_info.py +1 -2
  182. ncbi/datasets/openapi/models/v2reports_average_nucleotide_identity.py +7 -8
  183. ncbi/datasets/openapi/models/v2reports_average_nucleotide_identity_match_status.py +1 -2
  184. ncbi/datasets/openapi/models/v2reports_average_nucleotide_identity_taxonomy_check_status.py +1 -2
  185. ncbi/datasets/openapi/models/v2reports_bio_project.py +1 -2
  186. ncbi/datasets/openapi/models/v2reports_bio_project_lineage.py +1 -2
  187. ncbi/datasets/openapi/models/v2reports_bio_sample_attribute.py +1 -2
  188. ncbi/datasets/openapi/models/v2reports_bio_sample_contact.py +1 -2
  189. ncbi/datasets/openapi/models/v2reports_bio_sample_data_report.py +1 -2
  190. ncbi/datasets/openapi/models/v2reports_bio_sample_data_report_page.py +1 -2
  191. ncbi/datasets/openapi/models/v2reports_bio_sample_description.py +1 -2
  192. ncbi/datasets/openapi/models/v2reports_bio_sample_descriptor.py +1 -2
  193. ncbi/datasets/openapi/models/v2reports_bio_sample_id.py +1 -2
  194. ncbi/datasets/openapi/models/v2reports_bio_sample_owner.py +1 -2
  195. ncbi/datasets/openapi/models/v2reports_bio_sample_status.py +1 -2
  196. ncbi/datasets/openapi/models/v2reports_busco_stat.py +1 -2
  197. ncbi/datasets/openapi/models/v2reports_check_m.py +1 -2
  198. ncbi/datasets/openapi/models/v2reports_classification.py +8 -4
  199. ncbi/datasets/openapi/models/v2reports_collection_type.py +1 -2
  200. ncbi/datasets/openapi/models/v2reports_conserved_domain.py +1 -2
  201. ncbi/datasets/openapi/models/v2reports_content_type.py +1 -2
  202. ncbi/datasets/openapi/models/v2reports_count_type.py +1 -2
  203. ncbi/datasets/openapi/models/v2reports_error.py +11 -12
  204. ncbi/datasets/openapi/models/v2reports_error_assembly_error_code.py +1 -2
  205. ncbi/datasets/openapi/models/v2reports_error_gene_error_code.py +1 -2
  206. ncbi/datasets/openapi/models/v2reports_error_organelle_error_code.py +1 -2
  207. ncbi/datasets/openapi/models/v2reports_error_taxonomy_error_code.py +1 -2
  208. ncbi/datasets/openapi/models/v2reports_error_virus_error_code.py +1 -2
  209. ncbi/datasets/openapi/models/v2reports_feature_counts.py +1 -2
  210. ncbi/datasets/openapi/models/v2reports_functional_site.py +97 -0
  211. ncbi/datasets/openapi/models/v2reports_gene_counts.py +1 -2
  212. ncbi/datasets/openapi/models/v2reports_gene_data_report_page.py +1 -2
  213. ncbi/datasets/openapi/models/v2reports_gene_descriptor.py +7 -8
  214. ncbi/datasets/openapi/models/v2reports_gene_group.py +1 -2
  215. ncbi/datasets/openapi/models/v2reports_gene_ontology.py +1 -2
  216. ncbi/datasets/openapi/models/v2reports_gene_report_match.py +1 -2
  217. ncbi/datasets/openapi/models/v2reports_gene_summary.py +1 -2
  218. ncbi/datasets/openapi/models/v2reports_gene_type.py +1 -2
  219. ncbi/datasets/openapi/models/v2reports_genome_annotation.py +7 -8
  220. ncbi/datasets/openapi/models/v2reports_genome_annotation_report_match.py +1 -2
  221. ncbi/datasets/openapi/models/v2reports_genome_annotation_report_page.py +1 -2
  222. ncbi/datasets/openapi/models/v2reports_genomic_location.py +1 -2
  223. ncbi/datasets/openapi/models/v2reports_genomic_region.py +3 -4
  224. ncbi/datasets/openapi/models/v2reports_genomic_region_genomic_region_type.py +1 -2
  225. ncbi/datasets/openapi/models/v2reports_infraspecific_names.py +1 -2
  226. ncbi/datasets/openapi/models/v2reports_isolate.py +1 -2
  227. ncbi/datasets/openapi/models/v2reports_lineage_organism.py +1 -2
  228. ncbi/datasets/openapi/models/v2reports_linked_assembly.py +3 -4
  229. ncbi/datasets/openapi/models/v2reports_linked_assembly_type.py +1 -2
  230. ncbi/datasets/openapi/models/v2reports_mature_peptide.py +1 -2
  231. ncbi/datasets/openapi/models/v2reports_message.py +1 -2
  232. ncbi/datasets/openapi/models/v2reports_name_and_authority.py +1 -2
  233. ncbi/datasets/openapi/models/v2reports_name_and_authority_note.py +3 -4
  234. ncbi/datasets/openapi/models/v2reports_name_and_authority_note_classifier.py +1 -2
  235. ncbi/datasets/openapi/models/v2reports_name_and_authority_publication.py +1 -2
  236. ncbi/datasets/openapi/models/v2reports_nomenclature_authority.py +1 -2
  237. ncbi/datasets/openapi/models/v2reports_organelle.py +5 -6
  238. ncbi/datasets/openapi/models/v2reports_organelle_biosample.py +1 -2
  239. ncbi/datasets/openapi/models/v2reports_organelle_data_reports.py +1 -2
  240. ncbi/datasets/openapi/models/v2reports_organelle_gene_counts.py +1 -2
  241. ncbi/datasets/openapi/models/v2reports_organelle_info.py +1 -2
  242. ncbi/datasets/openapi/models/v2reports_organelle_topology.py +1 -2
  243. ncbi/datasets/openapi/models/v2reports_organelle_type.py +1 -2
  244. ncbi/datasets/openapi/models/v2reports_organism.py +1 -2
  245. ncbi/datasets/openapi/models/v2reports_orientation.py +1 -2
  246. ncbi/datasets/openapi/models/v2reports_paired_assembly.py +7 -6
  247. ncbi/datasets/openapi/models/v2reports_process_metadata.py +1 -2
  248. ncbi/datasets/openapi/models/v2reports_product_descriptor.py +5 -6
  249. ncbi/datasets/openapi/models/v2reports_prokaryote_gene_location_completeness.py +37 -0
  250. ncbi/datasets/openapi/models/v2reports_protein.py +1 -2
  251. ncbi/datasets/openapi/models/v2reports_protein_conserved_domain.py +103 -0
  252. ncbi/datasets/openapi/models/v2reports_protein_data_report.py +127 -0
  253. ncbi/datasets/openapi/models/v2reports_protein_data_report_page.py +95 -0
  254. ncbi/datasets/openapi/models/v2reports_protein_family.py +95 -0
  255. ncbi/datasets/openapi/models/v2reports_purpose_of_sampling.py +1 -2
  256. ncbi/datasets/openapi/models/v2reports_range.py +3 -4
  257. ncbi/datasets/openapi/models/v2reports_rank_type.py +3 -2
  258. ncbi/datasets/openapi/models/v2reports_reference.py +1 -2
  259. ncbi/datasets/openapi/models/v2reports_rna_type.py +1 -2
  260. ncbi/datasets/openapi/models/v2reports_seq_range_set.py +1 -2
  261. ncbi/datasets/openapi/models/v2reports_seq_range_set_fasta.py +1 -2
  262. ncbi/datasets/openapi/models/v2reports_sequence_info.py +1 -2
  263. ncbi/datasets/openapi/models/v2reports_sequence_information.py +1 -2
  264. ncbi/datasets/openapi/models/v2reports_source_database.py +1 -2
  265. ncbi/datasets/openapi/models/v2reports_tax_data.py +1 -2
  266. ncbi/datasets/openapi/models/v2reports_taxonomy_data_report_page.py +1 -2
  267. ncbi/datasets/openapi/models/v2reports_taxonomy_names_data_report_page.py +1 -2
  268. ncbi/datasets/openapi/models/v2reports_taxonomy_names_descriptor.py +3 -4
  269. ncbi/datasets/openapi/models/v2reports_taxonomy_names_descriptor_citation.py +1 -2
  270. ncbi/datasets/openapi/models/v2reports_taxonomy_names_report_match.py +1 -2
  271. ncbi/datasets/openapi/models/v2reports_taxonomy_node.py +7 -6
  272. ncbi/datasets/openapi/models/v2reports_taxonomy_node_count_by_type.py +3 -4
  273. ncbi/datasets/openapi/models/v2reports_taxonomy_report_match.py +1 -2
  274. ncbi/datasets/openapi/models/v2reports_taxonomy_type_material.py +1 -2
  275. ncbi/datasets/openapi/models/v2reports_transcript.py +5 -6
  276. ncbi/datasets/openapi/models/v2reports_transcript_select_category.py +1 -2
  277. ncbi/datasets/openapi/models/v2reports_transcript_transcript_type.py +1 -2
  278. ncbi/datasets/openapi/models/v2reports_transcript_type_count.py +3 -4
  279. ncbi/datasets/openapi/models/v2reports_type_material.py +1 -2
  280. ncbi/datasets/openapi/models/v2reports_virus_annotation_report.py +1 -2
  281. ncbi/datasets/openapi/models/v2reports_virus_annotation_report_page.py +1 -2
  282. ncbi/datasets/openapi/models/v2reports_virus_assembly.py +5 -6
  283. ncbi/datasets/openapi/models/v2reports_virus_assembly_collection_location.py +1 -2
  284. ncbi/datasets/openapi/models/v2reports_virus_assembly_completeness.py +1 -2
  285. ncbi/datasets/openapi/models/v2reports_virus_assembly_submitter_info.py +1 -2
  286. ncbi/datasets/openapi/models/v2reports_virus_data_report_page.py +1 -2
  287. ncbi/datasets/openapi/models/v2reports_virus_gene.py +1 -2
  288. ncbi/datasets/openapi/models/v2reports_virus_peptide.py +3 -4
  289. ncbi/datasets/openapi/models/v2reports_virus_peptide_uni_prot_id.py +1 -2
  290. ncbi/datasets/openapi/models/v2reports_virus_peptide_viral_peptide_completeness.py +1 -2
  291. ncbi/datasets/openapi/models/v2reports_warning.py +3 -4
  292. ncbi/datasets/openapi/models/v2reports_warning_gene_warning_code.py +1 -2
  293. ncbi/datasets/openapi/models/v2reports_warning_replaced_id.py +1 -2
  294. ncbi/datasets/openapi/models/v2reports_wgs_info.py +1 -2
  295. ncbi/datasets/openapi/rest.py +1 -2
  296. ncbi_datasets_pyclient-18.13.0.dist-info/METADATA +537 -0
  297. ncbi_datasets_pyclient-18.13.0.dist-info/RECORD +305 -0
  298. ncbi_datasets_pyclient-18.4.0.dist-info/METADATA +0 -25
  299. ncbi_datasets_pyclient-18.4.0.dist-info/RECORD +0 -254
  300. {ncbi_datasets_pyclient-18.4.0.dist-info → ncbi_datasets_pyclient-18.13.0.dist-info}/WHEEL +0 -0
  301. {ncbi_datasets_pyclient-18.4.0.dist-info → ncbi_datasets_pyclient-18.13.0.dist-info}/licenses/LICENSE +0 -0
  302. {ncbi_datasets_pyclient-18.4.0.dist-info → ncbi_datasets_pyclient-18.13.0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,89 @@
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+ # coding: utf-8
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+
3
+ """
4
+ NCBI Datasets API
5
+
6
+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
+
8
+ The version of the OpenAPI document: v2
9
+ Generated by OpenAPI Generator (https://openapi-generator.tech)
10
+
11
+ Do not edit the class manually.
12
+ """ # noqa: E501
13
+
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+
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+ from __future__ import annotations
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+ import pprint
17
+ import re # noqa: F401
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+ import json
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+
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+ from pydantic import BaseModel, ConfigDict, StrictFloat, StrictInt, StrictStr
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+ from typing import Any, ClassVar, Dict, List, Optional, Union
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+ from typing import Optional, Set
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+ from typing_extensions import Self
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+
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+ class Ncbiprotddv2StructureDataReportExperiment(BaseModel):
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+ """
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+ Ncbiprotddv2StructureDataReportExperiment
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+ """ # noqa: E501
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+ experimental_method: Optional[StrictStr] = None
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+ resolution: Optional[Union[StrictFloat, StrictInt]] = None
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+ __properties: ClassVar[List[str]] = ["experimental_method", "resolution"]
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+
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+ model_config = ConfigDict(
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+ populate_by_name=True,
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+ validate_assignment=True,
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+ protected_namespaces=(),
37
+ )
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+
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+
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+ def to_str(self) -> str:
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+ """Returns the string representation of the model using alias"""
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+ return pprint.pformat(self.model_dump(by_alias=True))
43
+
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+ def to_json(self) -> str:
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+ """Returns the JSON representation of the model using alias"""
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+ # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
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+ return json.dumps(self.to_dict())
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+
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+ @classmethod
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+ def from_json(cls, json_str: str) -> Optional[Self]:
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+ """Create an instance of Ncbiprotddv2StructureDataReportExperiment from a JSON string"""
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+ return cls.from_dict(json.loads(json_str))
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+
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+ def to_dict(self) -> Dict[str, Any]:
55
+ """Return the dictionary representation of the model using alias.
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+
57
+ This has the following differences from calling pydantic's
58
+ `self.model_dump(by_alias=True)`:
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+
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+ * `None` is only added to the output dict for nullable fields that
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+ were set at model initialization. Other fields with value `None`
62
+ are ignored.
63
+ """
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+ excluded_fields: Set[str] = set([
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+ ])
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+
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+ _dict = self.model_dump(
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+ by_alias=True,
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+ exclude=excluded_fields,
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+ exclude_none=True,
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+ )
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+ return _dict
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+
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+ @classmethod
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+ def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
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+ """Create an instance of Ncbiprotddv2StructureDataReportExperiment from a dict"""
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+ if obj is None:
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+ return None
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+
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+ if not isinstance(obj, dict):
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+ return cls.model_validate(obj)
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+
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+ _obj = cls.model_validate({
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+ "experimental_method": obj.get("experimental_method"),
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+ "resolution": obj.get("resolution")
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+ })
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+ return _obj
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+
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+
@@ -0,0 +1,42 @@
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+ # coding: utf-8
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+
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+ """
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+ NCBI Datasets API
5
+
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
+
8
+ The version of the OpenAPI document: v2
9
+ Generated by OpenAPI Generator (https://openapi-generator.tech)
10
+
11
+ Do not edit the class manually.
12
+ """ # noqa: E501
13
+
14
+
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+ from __future__ import annotations
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+ import json
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+ from enum import Enum
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+ from typing_extensions import Self
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+
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+
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+ class Ncbiprotddv2StructureDataReportKind(str, Enum):
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+ """
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+ Ncbiprotddv2StructureDataReportKind
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+ """
25
+
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+ """
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+ allowed enum values
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+ """
29
+ DNA = 'DNA'
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+ RNA = 'RNA'
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+ PROTEIN = 'PROTEIN'
32
+ OTHER_BIOPOLYMER = 'OTHER_BIOPOLYMER'
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+ SOLVENT = 'SOLVENT'
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+ OTHER_NONPOLYMER = 'OTHER_NONPOLYMER'
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+ OTHER = 'OTHER'
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+
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+ @classmethod
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+ def from_json(cls, json_str: str) -> Self:
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+ """Create an instance of Ncbiprotddv2StructureDataReportKind from a JSON string"""
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+ return cls(json.loads(json_str))
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+
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+
@@ -0,0 +1,94 @@
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+ # coding: utf-8
2
+
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+ """
4
+ NCBI Datasets API
5
+
6
+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
+
8
+ The version of the OpenAPI document: v2
9
+ Generated by OpenAPI Generator (https://openapi-generator.tech)
10
+
11
+ Do not edit the class manually.
12
+ """ # noqa: E501
13
+
14
+
15
+ from __future__ import annotations
16
+ import pprint
17
+ import re # noqa: F401
18
+ import json
19
+
20
+ from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
21
+ from typing import Any, ClassVar, Dict, List, Optional
22
+ from ncbi.datasets.openapi.models.ncbiprotddv2_structure_data_report_kind import Ncbiprotddv2StructureDataReportKind
23
+ from typing import Optional, Set
24
+ from typing_extensions import Self
25
+
26
+ class Ncbiprotddv2StructureDataReportLigandChain(BaseModel):
27
+ """
28
+ Ncbiprotddv2StructureDataReportLigandChain
29
+ """ # noqa: E501
30
+ chain_id: Optional[StrictStr] = None
31
+ kind: Optional[Ncbiprotddv2StructureDataReportKind] = Ncbiprotddv2StructureDataReportKind.DNA
32
+ molecule_group: Optional[StrictInt] = None
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+ sid: Optional[StrictInt] = None
34
+ __properties: ClassVar[List[str]] = ["chain_id", "kind", "molecule_group", "sid"]
35
+
36
+ model_config = ConfigDict(
37
+ populate_by_name=True,
38
+ validate_assignment=True,
39
+ protected_namespaces=(),
40
+ )
41
+
42
+
43
+ def to_str(self) -> str:
44
+ """Returns the string representation of the model using alias"""
45
+ return pprint.pformat(self.model_dump(by_alias=True))
46
+
47
+ def to_json(self) -> str:
48
+ """Returns the JSON representation of the model using alias"""
49
+ # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
50
+ return json.dumps(self.to_dict())
51
+
52
+ @classmethod
53
+ def from_json(cls, json_str: str) -> Optional[Self]:
54
+ """Create an instance of Ncbiprotddv2StructureDataReportLigandChain from a JSON string"""
55
+ return cls.from_dict(json.loads(json_str))
56
+
57
+ def to_dict(self) -> Dict[str, Any]:
58
+ """Return the dictionary representation of the model using alias.
59
+
60
+ This has the following differences from calling pydantic's
61
+ `self.model_dump(by_alias=True)`:
62
+
63
+ * `None` is only added to the output dict for nullable fields that
64
+ were set at model initialization. Other fields with value `None`
65
+ are ignored.
66
+ """
67
+ excluded_fields: Set[str] = set([
68
+ ])
69
+
70
+ _dict = self.model_dump(
71
+ by_alias=True,
72
+ exclude=excluded_fields,
73
+ exclude_none=True,
74
+ )
75
+ return _dict
76
+
77
+ @classmethod
78
+ def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
79
+ """Create an instance of Ncbiprotddv2StructureDataReportLigandChain from a dict"""
80
+ if obj is None:
81
+ return None
82
+
83
+ if not isinstance(obj, dict):
84
+ return cls.model_validate(obj)
85
+
86
+ _obj = cls.model_validate({
87
+ "chain_id": obj.get("chain_id"),
88
+ "kind": obj.get("kind") if obj.get("kind") is not None else Ncbiprotddv2StructureDataReportKind.DNA,
89
+ "molecule_group": obj.get("molecule_group"),
90
+ "sid": obj.get("sid")
91
+ })
92
+ return _obj
93
+
94
+
@@ -0,0 +1,89 @@
1
+ # coding: utf-8
2
+
3
+ """
4
+ NCBI Datasets API
5
+
6
+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
+
8
+ The version of the OpenAPI document: v2
9
+ Generated by OpenAPI Generator (https://openapi-generator.tech)
10
+
11
+ Do not edit the class manually.
12
+ """ # noqa: E501
13
+
14
+
15
+ from __future__ import annotations
16
+ import pprint
17
+ import re # noqa: F401
18
+ import json
19
+
20
+ from pydantic import BaseModel, ConfigDict, StrictInt, StrictStr
21
+ from typing import Any, ClassVar, Dict, List, Optional
22
+ from typing import Optional, Set
23
+ from typing_extensions import Self
24
+
25
+ class Ncbiprotddv2StructureRequest(BaseModel):
26
+ """
27
+ Ncbiprotddv2StructureRequest
28
+ """ # noqa: E501
29
+ pdb_id: Optional[StrictStr] = None
30
+ mmdb_id: Optional[StrictInt] = None
31
+ __properties: ClassVar[List[str]] = ["pdb_id", "mmdb_id"]
32
+
33
+ model_config = ConfigDict(
34
+ populate_by_name=True,
35
+ validate_assignment=True,
36
+ protected_namespaces=(),
37
+ )
38
+
39
+
40
+ def to_str(self) -> str:
41
+ """Returns the string representation of the model using alias"""
42
+ return pprint.pformat(self.model_dump(by_alias=True))
43
+
44
+ def to_json(self) -> str:
45
+ """Returns the JSON representation of the model using alias"""
46
+ # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
47
+ return json.dumps(self.to_dict())
48
+
49
+ @classmethod
50
+ def from_json(cls, json_str: str) -> Optional[Self]:
51
+ """Create an instance of Ncbiprotddv2StructureRequest from a JSON string"""
52
+ return cls.from_dict(json.loads(json_str))
53
+
54
+ def to_dict(self) -> Dict[str, Any]:
55
+ """Return the dictionary representation of the model using alias.
56
+
57
+ This has the following differences from calling pydantic's
58
+ `self.model_dump(by_alias=True)`:
59
+
60
+ * `None` is only added to the output dict for nullable fields that
61
+ were set at model initialization. Other fields with value `None`
62
+ are ignored.
63
+ """
64
+ excluded_fields: Set[str] = set([
65
+ ])
66
+
67
+ _dict = self.model_dump(
68
+ by_alias=True,
69
+ exclude=excluded_fields,
70
+ exclude_none=True,
71
+ )
72
+ return _dict
73
+
74
+ @classmethod
75
+ def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
76
+ """Create an instance of Ncbiprotddv2StructureRequest from a dict"""
77
+ if obj is None:
78
+ return None
79
+
80
+ if not isinstance(obj, dict):
81
+ return cls.model_validate(obj)
82
+
83
+ _obj = cls.model_validate({
84
+ "pdb_id": obj.get("pdb_id"),
85
+ "mmdb_id": obj.get("mmdb_id")
86
+ })
87
+ return _obj
88
+
89
+
@@ -0,0 +1,95 @@
1
+ # coding: utf-8
2
+
3
+ """
4
+ NCBI Datasets API
5
+
6
+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
+
8
+ The version of the OpenAPI document: v2
9
+ Generated by OpenAPI Generator (https://openapi-generator.tech)
10
+
11
+ Do not edit the class manually.
12
+ """ # noqa: E501
13
+
14
+
15
+ from __future__ import annotations
16
+ import pprint
17
+ import re # noqa: F401
18
+ import json
19
+
20
+ from pydantic import BaseModel, ConfigDict, StrictFloat, StrictInt
21
+ from typing import Any, ClassVar, Dict, List, Optional, Union
22
+ from typing import Optional, Set
23
+ from typing_extensions import Self
24
+
25
+ class Ncbiprotddv2VastScore(BaseModel):
26
+ """
27
+ Ncbiprotddv2VastScore
28
+ """ # noqa: E501
29
+ vast_score: Optional[Union[StrictFloat, StrictInt]] = None
30
+ align_length: Optional[StrictInt] = None
31
+ pct_identity: Optional[Union[StrictFloat, StrictInt]] = None
32
+ rmsd: Optional[Union[StrictFloat, StrictInt]] = None
33
+ p_value: Optional[Union[StrictFloat, StrictInt]] = None
34
+ __properties: ClassVar[List[str]] = ["vast_score", "align_length", "pct_identity", "rmsd", "p_value"]
35
+
36
+ model_config = ConfigDict(
37
+ populate_by_name=True,
38
+ validate_assignment=True,
39
+ protected_namespaces=(),
40
+ )
41
+
42
+
43
+ def to_str(self) -> str:
44
+ """Returns the string representation of the model using alias"""
45
+ return pprint.pformat(self.model_dump(by_alias=True))
46
+
47
+ def to_json(self) -> str:
48
+ """Returns the JSON representation of the model using alias"""
49
+ # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
50
+ return json.dumps(self.to_dict())
51
+
52
+ @classmethod
53
+ def from_json(cls, json_str: str) -> Optional[Self]:
54
+ """Create an instance of Ncbiprotddv2VastScore from a JSON string"""
55
+ return cls.from_dict(json.loads(json_str))
56
+
57
+ def to_dict(self) -> Dict[str, Any]:
58
+ """Return the dictionary representation of the model using alias.
59
+
60
+ This has the following differences from calling pydantic's
61
+ `self.model_dump(by_alias=True)`:
62
+
63
+ * `None` is only added to the output dict for nullable fields that
64
+ were set at model initialization. Other fields with value `None`
65
+ are ignored.
66
+ """
67
+ excluded_fields: Set[str] = set([
68
+ ])
69
+
70
+ _dict = self.model_dump(
71
+ by_alias=True,
72
+ exclude=excluded_fields,
73
+ exclude_none=True,
74
+ )
75
+ return _dict
76
+
77
+ @classmethod
78
+ def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
79
+ """Create an instance of Ncbiprotddv2VastScore from a dict"""
80
+ if obj is None:
81
+ return None
82
+
83
+ if not isinstance(obj, dict):
84
+ return cls.model_validate(obj)
85
+
86
+ _obj = cls.model_validate({
87
+ "vast_score": obj.get("vast_score"),
88
+ "align_length": obj.get("align_length"),
89
+ "pct_identity": obj.get("pct_identity"),
90
+ "rmsd": obj.get("rmsd"),
91
+ "p_value": obj.get("p_value")
92
+ })
93
+ return _obj
94
+
95
+
@@ -3,10 +3,9 @@
3
3
  """
4
4
  NCBI Datasets API
5
5
 
6
- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
6
+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
7
 
8
8
  The version of the OpenAPI document: v2
9
- Contact: help@ncbi.nlm.nih.gov
10
9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
11
10
 
12
11
  Do not edit the class manually.
@@ -3,10 +3,9 @@
3
3
  """
4
4
  NCBI Datasets API
5
5
 
6
- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
6
+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
7
7
 
8
8
  The version of the OpenAPI document: v2
9
- Contact: help@ncbi.nlm.nih.gov
10
9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
11
10
 
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  Do not edit the class manually.
@@ -0,0 +1,87 @@
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+ # coding: utf-8
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+
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+ """
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+ NCBI Datasets API
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+
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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+
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+ The version of the OpenAPI document: v2
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+ Generated by OpenAPI Generator (https://openapi-generator.tech)
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+
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+ Do not edit the class manually.
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+ """ # noqa: E501
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+
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+
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+ from __future__ import annotations
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+ import pprint
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+ import re # noqa: F401
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+ import json
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+
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+ from pydantic import BaseModel, ConfigDict, StrictStr
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+ from typing import Any, ClassVar, Dict, List, Optional
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+ from typing import Optional, Set
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+ from typing_extensions import Self
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+
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+ class V2Accessions(BaseModel):
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+ """
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+ V2Accessions
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+ """ # noqa: E501
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+ accessions: Optional[List[StrictStr]] = None
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+ __properties: ClassVar[List[str]] = ["accessions"]
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+
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+ model_config = ConfigDict(
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+ populate_by_name=True,
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+ validate_assignment=True,
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+ protected_namespaces=(),
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+ )
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+
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+
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+ def to_str(self) -> str:
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+ """Returns the string representation of the model using alias"""
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+ return pprint.pformat(self.model_dump(by_alias=True))
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+
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+ def to_json(self) -> str:
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+ """Returns the JSON representation of the model using alias"""
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+ # TODO: pydantic v2: use .model_dump_json(by_alias=True, exclude_unset=True) instead
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+ return json.dumps(self.to_dict())
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+
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+ @classmethod
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+ def from_json(cls, json_str: str) -> Optional[Self]:
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+ """Create an instance of V2Accessions from a JSON string"""
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+ return cls.from_dict(json.loads(json_str))
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+
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+ def to_dict(self) -> Dict[str, Any]:
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+ """Return the dictionary representation of the model using alias.
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+
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+ This has the following differences from calling pydantic's
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+ `self.model_dump(by_alias=True)`:
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+
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+ * `None` is only added to the output dict for nullable fields that
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+ were set at model initialization. Other fields with value `None`
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+ are ignored.
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+ """
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+ excluded_fields: Set[str] = set([
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+ ])
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+
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+ _dict = self.model_dump(
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+ by_alias=True,
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+ exclude=excluded_fields,
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+ exclude_none=True,
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+ )
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+ return _dict
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+
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+ @classmethod
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+ def from_dict(cls, obj: Optional[Dict[str, Any]]) -> Optional[Self]:
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+ """Create an instance of V2Accessions from a dict"""
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+ if obj is None:
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+ return None
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+
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+ if not isinstance(obj, dict):
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+ return cls.model_validate(obj)
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+
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+ _obj = cls.model_validate({
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+ "accessions": obj.get("accessions")
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+ })
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+ return _obj
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+
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+
@@ -3,10 +3,9 @@
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  """
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  NCBI Datasets API
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- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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  The version of the OpenAPI document: v2
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- Contact: help@ncbi.nlm.nih.gov
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9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
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10
 
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  Do not edit the class manually.
@@ -27,9 +26,9 @@ class V2AnnotationForAssemblyType(str, Enum):
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  """
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  allowed enum values
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  """
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+ DEFAULT = 'DEFAULT'
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  GENOME_GFF = 'GENOME_GFF'
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  GENOME_GBFF = 'GENOME_GBFF'
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- GENOME_GB = 'GENOME_GB'
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  RNA_FASTA = 'RNA_FASTA'
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  PROT_FASTA = 'PROT_FASTA'
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  GENOME_GTF = 'GENOME_GTF'
@@ -3,10 +3,9 @@
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  """
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  NCBI Datasets API
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- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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  The version of the OpenAPI document: v2
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- Contact: help@ncbi.nlm.nih.gov
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9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
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10
 
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  Do not edit the class manually.
@@ -27,6 +26,7 @@ class V2AnnotationForOrganelleType(str, Enum):
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  """
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  allowed enum values
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  """
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+ DEFAULT = 'DEFAULT'
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  GENOME_FASTA = 'GENOME_FASTA'
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  CDS_FASTA = 'CDS_FASTA'
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  PROTEIN_FASTA = 'PROTEIN_FASTA'
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  """
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  NCBI Datasets API
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- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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  The version of the OpenAPI document: v2
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- Contact: help@ncbi.nlm.nih.gov
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9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
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10
 
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  Do not edit the class manually.
@@ -3,10 +3,9 @@
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  """
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  NCBI Datasets API
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5
 
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- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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  The version of the OpenAPI document: v2
9
- Contact: help@ncbi.nlm.nih.gov
10
9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
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10
 
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  Do not edit the class manually.
@@ -3,10 +3,9 @@
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  """
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  NCBI Datasets API
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5
 
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- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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7
 
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  The version of the OpenAPI document: v2
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- Contact: help@ncbi.nlm.nih.gov
10
9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
11
10
 
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  Do not edit the class manually.
@@ -3,10 +3,9 @@
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  """
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  NCBI Datasets API
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5
 
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- ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The Datasets version 2 API is still in alpha, and we're updating it often to add new functionality, iron out bugs and enhance usability. For some larger downloads, you may want to download a [dehydrated zip archive](https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/genomes/large-download/), and retrieve the individual data files at a later time.
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+ ### NCBI Datasets is a resource that lets you easily gather data from NCBI. The NCBI Datasets version 2 API is updated often to add new features, fix bugs, and enhance usability.
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7
 
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  The version of the OpenAPI document: v2
9
- Contact: help@ncbi.nlm.nih.gov
10
9
  Generated by OpenAPI Generator (https://openapi-generator.tech)
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10
 
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  Do not edit the class manually.