nabu 2024.1.1__py3-none-any.whl → 2024.1.2__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- nabu/__init__.py +1 -1
- nabu/app/cast_volume.py +11 -2
- nabu/app/multicor.py +24 -2
- nabu/io/cast_volume.py +3 -3
- nabu/io/utils.py +2 -2
- nabu/stitching/tests/test_z_stitching.py +0 -1
- nabu/stitching/z_stitching.py +3 -3
- {nabu-2024.1.1.dist-info → nabu-2024.1.2.dist-info}/METADATA +2 -2
- nabu-2024.1.2.dist-info/RECORD +296 -0
- {nabu-2024.1.1.dist-info → nabu-2024.1.2.dist-info}/WHEEL +1 -1
- nabu-2024.1.2.dist-info/top_level.txt +2 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/conf.py +0 -137
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/create_conf_doc.py +0 -38
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/doc/get_mathjax.py +0 -34
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/__init__.py +0 -17
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/bootstrap.py +0 -88
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/bootstrap_stitching.py +0 -69
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/cast_volume.py +0 -272
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/cli_configs.py +0 -626
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/compare_volumes.py +0 -94
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/composite_cor.py +0 -144
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/correct_rot.py +0 -70
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/create_distortion_map_from_poly.py +0 -153
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/diag_to_pix.py +0 -358
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/diag_to_rot.py +0 -449
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/double_flatfield.py +0 -143
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/generate_header.py +0 -261
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/histogram.py +0 -197
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/multicor.py +0 -90
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/nx_z_splitter.py +0 -125
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/parse_reconstruction_log.py +0 -151
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/prepare_weights_double.py +0 -163
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reconstruct.py +0 -120
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reconstruct_helical.py +0 -116
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/reduce_dark_flat.py +0 -181
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/rotate.py +0 -162
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/shrink_dataset.py +0 -98
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/stitching.py +0 -85
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/tests/test_reduce_dark_flat.py +0 -78
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/utils.py +0 -33
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app/validator.py +0 -110
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/convolution.py +0 -8
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/fft.py +0 -4
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/kernel.py +0 -97
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/medfilt.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/padding.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/processing.py +0 -75
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/tests/__init__.py +0 -1
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/cuda/utils.py +0 -331
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/__init__.py +0 -12
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/alignment.py +0 -578
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/cor.py +0 -1621
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/cor_sino.py +0 -183
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/distortion.py +0 -112
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/focus.py +0 -362
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_alignment.py +0 -70
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_cor.py +0 -472
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_focus.py +0 -105
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_tilt.py +0 -41
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tests/test_translation.py +0 -78
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/tilt.py +0 -214
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/translation.py +0 -193
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/estimation/utils.py +0 -39
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/__init__.py +0 -2
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/cast_volume.py +0 -371
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/detector_distortion.py +0 -305
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/reader.py +0 -628
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/reader_helical.py +0 -114
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/test_cast_volume.py +0 -339
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/test_detector_distortion.py +0 -178
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tests/test_writers.py +0 -187
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/tiffwriter_zmm.py +0 -99
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/utils.py +0 -263
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/io/writer.py +0 -892
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/binning.py +0 -98
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/fftshift.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/filters.py +0 -24
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/fourier_filters.py +0 -152
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/histogram.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/histogram_cuda.py +0 -8
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/kernel_base.py +0 -4
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/padding.py +0 -83
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/padding_base.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/processing_base.py +0 -4
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/rotation.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/rotation_cuda.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/tests/__init__.py +0 -1
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/tests/test_binning.py +0 -48
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/tests/test_interpolation.py +0 -70
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/transpose.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/unsharp.py +0 -4
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/unsharp_cuda.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/unsharp_opencl.py +0 -8
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/misc/utils.py +0 -117
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/fft.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/kernel.py +0 -135
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/memcpy.py +0 -35
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/padding.py +0 -6
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/processing.py +0 -62
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/tests/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/opencl/utils.py +0 -292
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/config.py +0 -265
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/config_validators.py +0 -589
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/datadump.py +0 -164
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/dataset_validator.py +0 -211
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/detector_distortion_provider.py +0 -20
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/estimators.py +0 -1012
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fallback_utils.py +0 -149
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/chunked.py +0 -849
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/chunked_cuda.py +0 -152
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/computations.py +0 -260
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/dataset_validator.py +0 -63
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/nabu_config.py +0 -590
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/processconfig.py +0 -825
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/fullfield/reconstruction.py +0 -851
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/dataset_validator.py +0 -19
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/fbp.py +0 -147
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/filtering.py +0 -246
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/gridded_accumulator.py +0 -575
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_chunked_regridded.py +0 -1670
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_chunked_regridded_cuda.py +0 -119
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_reconstruction.py +0 -598
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/helical_utils.py +0 -42
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/nabu_config.py +0 -175
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/processconfig.py +0 -62
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/span_strategy.py +0 -483
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/test_accumulator.py +0 -157
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/test_pipeline_elements_full.py +0 -355
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/tests/test_strategy.py +0 -61
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/utils.py +0 -51
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/helical/weight_balancer.py +0 -101
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/params.py +0 -163
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/processconfig.py +0 -210
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/tests/test_chunk_reader.py +0 -78
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/tests/test_estimators.py +0 -149
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/utils.py +0 -116
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/writer.py +0 -193
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/pipeline/xrdct/__init__.py +0 -0
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/__init__.py +0 -7
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/alignment.py +0 -11
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ccd.py +0 -161
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ccd_cuda.py +0 -169
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf.py +0 -361
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/ctf_cuda.py +0 -142
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/distortion.py +0 -92
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield.py +0 -212
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_cuda.py +0 -174
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/double_flatfield_variable_region.py +0 -68
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield.py +0 -448
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_cuda.py +0 -144
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/flatfield_variable_region.py +0 -79
- build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/preproc/phase.py +0 -425
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- build/lib/nabu/reconstruction/reconstructor.py +0 -174
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- build/lib/nabu/reconstruction/sinogram.py +0 -467
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- build/lib/nabu/reconstruction/tests/__init__.py +0 -1
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- build/lib/nabu/reconstruction/tests/test_sino_normalization.py +0 -85
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- build/lib/nabu/resources/nxflatfield.py +0 -217
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- build/lib/nabu/resources/tests/__init__.py +0 -0
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- build/lib/nabu/stitching/z_stitching.py +0 -2279
- build/lib/nabu/tests.py +0 -51
- build/lib/nabu/testutils.py +0 -375
- build/lib/nabu/thirdparty/__init__.py +0 -0
- build/lib/nabu/thirdparty/algotom_convert_sino.py +0 -276
- build/lib/nabu/thirdparty/pore3d_deringer_munch.py +0 -108
- build/lib/nabu/thirdparty/tomocupy_remove_stripe.py +0 -586
- build/lib/nabu/thirdparty/tomopy_phase.py +0 -239
- build/lib/nabu/thirdparty/tomwer_load_flats_darks.py +0 -162
- build/lib/nabu/utils.py +0 -836
- nabu-2024.1.1.dist-info/RECORD +0 -2375
- nabu-2024.1.1.dist-info/top_level.txt +0 -4
- {build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/build/lib/nabu/app → nabu/app/tests}/__init__.py +0 -0
- {nabu-2024.1.1.dist-info → nabu-2024.1.2.dist-info}/LICENSE +0 -0
- {nabu-2024.1.1.dist-info → nabu-2024.1.2.dist-info}/entry_points.txt +0 -0
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import numpy as np
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import pytest
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from nabu.reconstruction.rings_cuda import CudaSinoMeanDeringer
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from nabu.testutils import compare_arrays, get_data, generate_tests_scenarios, __do_long_tests__
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from nabu.reconstruction.rings import MunchDeringer, SinoMeanDeringer, VoDeringer, __has_algotom__
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from nabu.thirdparty.pore3d_deringer_munch import munchetal_filter
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from nabu.cuda.utils import __has_pycuda__, get_cuda_context
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from nabu.processing.fft_cuda import get_available_fft_implems
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from nabu.reconstruction.rings_cuda import (
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CudaMunchDeringer,
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can_use_cuda_deringer,
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CudaVoDeringer,
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__have_tomocupy_deringer__,
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)
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__has_cuda_deringer__ = can_use_cuda_deringer()
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__have_tomocupy_deringer__ = False
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fw_scenarios = generate_tests_scenarios(
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{
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"levels": [4],
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"sigma": [1.0],
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"padding": [(100, 100)],
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"fft_implem": ["skcuda"],
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)
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{
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"levels": [4, 2],
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"sigma": [1.0, 2.0],
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"wname": ["db15", "haar", "rbio4.4"],
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"padding": [None, (100, 100), (50, 71)],
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"fft_implem": ["skcuda", "vkfft"],
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cls.sino = get_data("mri_sino500.npz")["data"]
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cls.tol = 5e-3
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cls.rings = {150: 0.5, -150: 0.5}
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class TestMunchDeringer:
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@staticmethod
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def add_stripes_to_sino(sino, rings_desc):
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"""
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Create a new sinogram by adding synthetic stripes to an existing one.
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Parameters
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Sinogram.
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Dictionary describing the stripes locations and intensity.
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@staticmethod
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sino = np.pad(sino, ((0, 0), padding), mode="edge")
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@pytest.mark.skipif(munchetal_filter is None, reason="Need PyWavelets for this test")
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@pytest.mark.parametrize("config", fw_scenarios)
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def test_munch_deringer(self, config):
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deringer = MunchDeringer(
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config["sigma"], self.sino.shape, levels=config["levels"], wname=config["wname"], padding=config["padding"]
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)
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sino = self.add_stripes_to_sino(self.sino, self.rings)
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ref = self.get_fourier_wavelets_reference_result(sino, config)
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# Wrapping with DeRinger
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res = np.zeros((1,) + sino.shape, dtype=np.float32)
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deringer.remove_rings(sino, output=res)
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err_max = np.max(np.abs(res[0] - ref))
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assert err_max < self.tol, "Max error is too high"
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@pytest.mark.skipif(
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not (__has_cuda_deringer__) or munchetal_filter is None,
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reason="Need pycuda, pycudwt and (scikit-cuda or pyvkfft) for this test",
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)
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@pytest.mark.parametrize("config", fw_scenarios)
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def test_cuda_munch_deringer(self, config):
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fft_implem = config["fft_implem"]
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if fft_implem not in self._available_fft_implems:
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pytest.skip("FFT implementation %s is not available" % fft_implem)
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sino = self.add_stripes_to_sino(self.sino, self.rings)
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deringer = CudaMunchDeringer(
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config["sigma"],
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self.sino.shape,
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levels=config["levels"],
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padding=config["padding"],
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fft_backend=fft_implem,
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cuda_options={"ctx": self.ctx},
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)
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d_sino = garray.to_gpu(sino)
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deringer.remove_rings(d_sino)
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res = d_sino.get()
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ref = self.get_fourier_wavelets_reference_result(sino, config)
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err_max = np.max(np.abs(res - ref))
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assert err_max < 1e-1, "Max error is too high with configuration %s" % (str(config))
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@pytest.mark.skipif(
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reason="Need algotom for this test",
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def test_vo_deringer(self):
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deringer = VoDeringer(self.sino.shape)
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sino_deringed = deringer.remove_rings_sinogram(self.sino)
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sinos = np.tile(self.sino, (10, 1, 1))
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sinos_deringed = deringer.remove_rings_sinograms(sinos)
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# TODO check result. The generated test sinogram is "too synthetic" for this kind of deringer
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reason="Need cupy for this test",
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)
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def test_cuda_vo_deringer(self):
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# Beware, this deringer seems to be buggy for "too-small" sinograms
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# (NaNs on the edges and in some regions). To be investigated
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deringer = CudaVoDeringer(self.sino2.shape)
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d_sino = garray.to_gpu(self.sino2)
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deringer.remove_rings_sinogram(d_sino)
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sino = d_sino.get()
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vo_deringer = VoDeringer(self.sino2.shape)
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sino_deringed = vo_deringer.remove_rings_sinogram(self.sino2)
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assert (
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np.max(np.abs(sino - sino_deringed)) < 2e-3
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), "Cuda implementation of Vo deringer does not yield the same results as base implementation"
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def test_mean_deringer(self):
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deringer_no_filtering = SinoMeanDeringer(self.sino.shape, mode="subtract")
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sino = self.sino.copy()
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deringer_no_filtering.remove_rings_sinogram(sino)
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sino = self.sino.copy()
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deringer_with_filtering = SinoMeanDeringer(self.sino.shape, mode="subtract", filter_cutoff=(0, 30))
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deringer_with_filtering.remove_rings_sinogram(sino)
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# TODO check results
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@pytest.mark.skipif(not (__has_pycuda__), reason="Need pycuda for this test")
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def test_cuda_mean_deringer(self):
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cuda_deringer = CudaSinoMeanDeringer(
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self.sino.shape,
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mode="subtract",
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filter_cutoff=(
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0,
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10,
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),
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ctx=self.ctx,
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)
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deringer = SinoMeanDeringer(
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self.sino.shape,
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mode="subtract",
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filter_cutoff=(
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0,
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10,
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),
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)
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d_sino = cuda_deringer.processing.to_device("sino", self.sino)
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cuda_deringer.remove_rings_sinogram(d_sino)
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sino = self.sino.copy()
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sino_d = deringer.remove_rings_sinogram(sino)
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dirac = np.zeros(self.sino.shape[-1], "f")
|
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dirac[dirac.size // 2] = 1
|
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deringer_filter_response = deringer._apply_filter(dirac)
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d_dirac = cuda_deringer.processing.to_device("dirac", dirac)
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cuda_deringer_filter_response = cuda_deringer._apply_filter(d_dirac)
|
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is_close, residual = compare_arrays(
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deringer_filter_response, cuda_deringer_filter_response.get(), 1e-7, return_residual=True
|
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)
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assert is_close, "Cuda deringer does not have the correct filter response: max_error=%.2e" % residual
|
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|
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|
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# There is a rather large discrepancy between the vertical_mean kernel and numpy.mean(). Not sure who is right
|
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|
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is_close, residual = compare_arrays(sino_d, d_sino.get(), 1e-1, return_residual=True)
|
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assert is_close, (
|
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"Cuda deringer does not yield the same result as base implementation: max_error=%.2e" % residual
|
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)
|
@@ -1,252 +0,0 @@
|
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1
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import numpy as np
|
2
|
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import pytest
|
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|
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from scipy.ndimage import shift
|
4
|
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from nabu.pipeline.params import fbp_filters
|
5
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from nabu.utils import clip_circle
|
6
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from nabu.testutils import get_data, generate_tests_scenarios, __do_long_tests__
|
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from nabu.cuda.utils import get_cuda_context, __has_pycuda__
|
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from nabu.opencl.utils import get_opencl_context, __has_pyopencl__
|
9
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|
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from nabu.processing.fft_cuda import has_skcuda, has_vkfft as has_vkfft_cu
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from nabu.processing.fft_opencl import has_vkfft as has_vkfft_cl
|
12
|
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|
13
|
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__has_pycuda__ = __has_pycuda__ and (has_skcuda() or has_vkfft_cu())
|
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|
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__has_pyopencl__ = __has_pyopencl__ and has_vkfft_cl()
|
15
|
-
|
16
|
-
if __has_pycuda__:
|
17
|
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from nabu.reconstruction.fbp import CudaBackprojector
|
18
|
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if __has_pyopencl__:
|
19
|
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from nabu.reconstruction.fbp_opencl import OpenCLBackprojector
|
20
|
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|
21
|
-
|
22
|
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scenarios = generate_tests_scenarios({"backend": ["cuda", "opencl"]})
|
23
|
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if __do_long_tests__:
|
24
|
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scenarios = generate_tests_scenarios(
|
25
|
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{
|
26
|
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"backend": ["cuda", "opencl"],
|
27
|
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"input_on_gpu": [False, True],
|
28
|
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"output_on_gpu": [False, True],
|
29
|
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"use_textures": [True, False],
|
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|
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}
|
31
|
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)
|
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|
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|
33
|
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|
34
|
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@pytest.fixture(scope="class")
|
35
|
-
def bootstrap(request):
|
36
|
-
cls = request.cls
|
37
|
-
cls.sino_512 = get_data("mri_sino500.npz")["data"]
|
38
|
-
cls.ref_512 = get_data("mri_rec_astra.npz")["data"]
|
39
|
-
# always use contiguous arrays
|
40
|
-
cls.sino_511 = np.ascontiguousarray(cls.sino_512[:, :-1])
|
41
|
-
# Could be set to 5.0e-2 when using textures. When not using textures, interpolation slightly differs
|
42
|
-
cls.tol = 5.1e-2
|
43
|
-
|
44
|
-
if __has_pycuda__:
|
45
|
-
cls.cuda_ctx = get_cuda_context(cleanup_at_exit=False)
|
46
|
-
if __has_pyopencl__:
|
47
|
-
cls.opencl_ctx = get_opencl_context("all")
|
48
|
-
yield
|
49
|
-
if __has_pycuda__:
|
50
|
-
cls.cuda_ctx.pop()
|
51
|
-
|
52
|
-
|
53
|
-
@pytest.mark.usefixtures("bootstrap")
|
54
|
-
class TestFBP:
|
55
|
-
@staticmethod
|
56
|
-
def clip_to_inner_circle(img, radius_factor=0.99):
|
57
|
-
radius = int(radius_factor * max(img.shape) / 2)
|
58
|
-
return clip_circle(img, radius=radius)
|
59
|
-
|
60
|
-
def _get_backprojector(self, config, *bp_args, **bp_kwargs):
|
61
|
-
if config["backend"] == "cuda":
|
62
|
-
if not (__has_pycuda__):
|
63
|
-
pytest.skip("Need pycuda + (scikit-cuda or pyvkfft)")
|
64
|
-
Backprojector = CudaBackprojector
|
65
|
-
ctx = self.cuda_ctx
|
66
|
-
else:
|
67
|
-
if not (__has_pyopencl__):
|
68
|
-
pytest.skip("Need pyopencl + pyvkfft")
|
69
|
-
Backprojector = OpenCLBackprojector
|
70
|
-
ctx = self.opencl_ctx
|
71
|
-
if config.get("use_textures", True) is False:
|
72
|
-
# patch "extra_options"
|
73
|
-
extra_options = bp_kwargs.pop("extra_options", {})
|
74
|
-
extra_options["use_textures"] = False
|
75
|
-
bp_kwargs["extra_options"] = extra_options
|
76
|
-
return Backprojector(*bp_args, **bp_kwargs, backend_options={"ctx": ctx})
|
77
|
-
|
78
|
-
@staticmethod
|
79
|
-
def apply_fbp(config, backprojector, sinogram):
|
80
|
-
if config.get("input_on_gpu", False):
|
81
|
-
sinogram = backprojector._processing.set_array("sinogram", sinogram)
|
82
|
-
if config.get("output_on_gpu", False):
|
83
|
-
output = backprojector._processing.allocate_array("output", backprojector.slice_shape, dtype="f")
|
84
|
-
else:
|
85
|
-
output = None
|
86
|
-
res = backprojector.fbp(sinogram, output=output)
|
87
|
-
if config.get("output_on_gpu", False):
|
88
|
-
res = res.get()
|
89
|
-
return res
|
90
|
-
|
91
|
-
@pytest.mark.parametrize("config", scenarios)
|
92
|
-
def test_fbp_512(self, config):
|
93
|
-
"""
|
94
|
-
Simple test of a FBP on a 512x512 slice
|
95
|
-
"""
|
96
|
-
B = self._get_backprojector(config, (500, 512))
|
97
|
-
res = self.apply_fbp(config, B, self.sino_512)
|
98
|
-
|
99
|
-
delta_clipped = self.clip_to_inner_circle(res - self.ref_512)
|
100
|
-
err_max = np.max(np.abs(delta_clipped))
|
101
|
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|
102
|
-
assert err_max < self.tol, "Something wrong with config=%s" % (str(config))
|
103
|
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|
104
|
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@pytest.mark.parametrize("config", scenarios)
|
105
|
-
def test_fbp_511(self, config):
|
106
|
-
"""
|
107
|
-
Test FBP of a 511x511 slice where the rotation axis is at (512-1)/2.0
|
108
|
-
"""
|
109
|
-
B = self._get_backprojector(config, (500, 511), rot_center=255.5)
|
110
|
-
res = self.apply_fbp(config, B, self.sino_511)
|
111
|
-
ref = self.ref_512[:-1, :-1]
|
112
|
-
|
113
|
-
delta_clipped = self.clip_to_inner_circle(res - ref)
|
114
|
-
err_max = np.max(np.abs(delta_clipped))
|
115
|
-
|
116
|
-
assert err_max < self.tol, "Something wrong with config=%s" % (str(config))
|
117
|
-
|
118
|
-
@pytest.mark.parametrize("config", scenarios)
|
119
|
-
def test_fbp_roi(self, config):
|
120
|
-
"""
|
121
|
-
Test FBP in region of interest
|
122
|
-
"""
|
123
|
-
sino = self.sino_511
|
124
|
-
|
125
|
-
B0 = self._get_backprojector(config, sino.shape, rot_center=255.5)
|
126
|
-
ref = B0.fbp(sino)
|
127
|
-
|
128
|
-
def backproject_roi(roi, reference):
|
129
|
-
B = self._get_backprojector(config, sino.shape, rot_center=255.5, slice_roi=roi)
|
130
|
-
res = self.apply_fbp(config, B, sino)
|
131
|
-
err_max = np.max(np.abs(res - reference))
|
132
|
-
return err_max
|
133
|
-
|
134
|
-
cases = {
|
135
|
-
# Test 1: use slice_roi=(0, -1, 0, -1), i.e plain FBP of whole slice
|
136
|
-
1: [(0, None, 0, None), ref],
|
137
|
-
# Test 2: horizontal strip
|
138
|
-
2: [(0, None, 50, 55), ref[50:55, :]],
|
139
|
-
# Test 3: vertical strip
|
140
|
-
3: [(60, 65, 0, None), ref[:, 60:65]],
|
141
|
-
# Test 4: rectangular inner ROI
|
142
|
-
4: [(157, 162, 260, -10), ref[260:-10, 157:162]],
|
143
|
-
}
|
144
|
-
for roi, ref in cases.values():
|
145
|
-
err_max = backproject_roi(roi, ref)
|
146
|
-
assert err_max < self.tol, "Something wrong with ROI = %s for config=%s" % (
|
147
|
-
str(roi),
|
148
|
-
str(config),
|
149
|
-
)
|
150
|
-
|
151
|
-
@pytest.mark.parametrize("config", scenarios)
|
152
|
-
def test_fbp_axis_corr(self, config):
|
153
|
-
"""
|
154
|
-
Test the "axis correction" feature
|
155
|
-
"""
|
156
|
-
sino = self.sino_512
|
157
|
-
|
158
|
-
# Create a sinogram with a drift in the rotation axis
|
159
|
-
def create_drifted_sino(sino, drifts):
|
160
|
-
out = np.zeros_like(sino)
|
161
|
-
for i in range(sino.shape[0]):
|
162
|
-
out[i] = shift(sino[i], drifts[i])
|
163
|
-
return out
|
164
|
-
|
165
|
-
drifts = np.linspace(0, 20, sino.shape[0])
|
166
|
-
sino = create_drifted_sino(sino, drifts)
|
167
|
-
|
168
|
-
B = self._get_backprojector(config, sino.shape, extra_options={"axis_correction": drifts})
|
169
|
-
res = self.apply_fbp(config, B, sino)
|
170
|
-
|
171
|
-
delta_clipped = clip_circle(res - self.ref_512, radius=200)
|
172
|
-
err_max = np.max(np.abs(delta_clipped))
|
173
|
-
# Max error is relatively high, migh be due to interpolation of scipy shift in sinogram
|
174
|
-
assert err_max < 10.0, "Max error is too high"
|
175
|
-
|
176
|
-
@pytest.mark.parametrize("config", scenarios)
|
177
|
-
def test_fbp_clip_circle(self, config):
|
178
|
-
"""
|
179
|
-
Test the "clip outer circle" parameter in (extra options)
|
180
|
-
"""
|
181
|
-
sino = self.sino_512
|
182
|
-
tol = 1e-5
|
183
|
-
|
184
|
-
for rot_center in [None, sino.shape[1] / 2.0 - 10, sino.shape[1] / 2.0 + 15]:
|
185
|
-
B = self._get_backprojector(
|
186
|
-
config, sino.shape, rot_center=rot_center, extra_options={"clip_outer_circle": True}
|
187
|
-
)
|
188
|
-
res = self.apply_fbp(config, B, sino)
|
189
|
-
|
190
|
-
B0 = self._get_backprojector(
|
191
|
-
config, sino.shape, rot_center=rot_center, extra_options={"clip_outer_circle": False}
|
192
|
-
)
|
193
|
-
res_noclip = B0.fbp(sino)
|
194
|
-
ref = self.clip_to_inner_circle(res_noclip, radius_factor=1)
|
195
|
-
|
196
|
-
abs_diff = np.abs(res - ref)
|
197
|
-
err_max = np.max(abs_diff)
|
198
|
-
assert err_max < tol, "Max error is too high for rot_center=%s ; %s" % (str(rot_center), str(config))
|
199
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@pytest.mark.parametrize("config", scenarios)
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def test_fbp_centered_axis(self, config):
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"""
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Test the "centered_axis" parameter (in extra options)
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"""
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sino = np.pad(self.sino_512, ((0, 0), (100, 0)))
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rot_center = (self.sino_512.shape[1] - 1) / 2.0 + 100
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B0 = self._get_backprojector(config, self.sino_512.shape)
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ref = B0.fbp(self.sino_512)
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# Check that "centered_axis" worked
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B = self._get_backprojector(config, sino.shape, rot_center=rot_center, extra_options={"centered_axis": True})
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res = self.apply_fbp(config, B, sino)
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# The outside region (outer circle) is different as "res" is a wider slice
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diff = self.clip_to_inner_circle(res[50:-50, 50:-50] - ref)
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err_max = np.max(np.abs(diff))
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assert err_max < 5e-2, "centered_axis without clip_circle: something wrong"
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# Check that "clip_outer_circle" works when used jointly with "centered_axis"
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B = self._get_backprojector(
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config,
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sino.shape,
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rot_center=rot_center,
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extra_options={
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"centered_axis": True,
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"clip_outer_circle": True,
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},
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)
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res2 = self.apply_fbp(config, B, sino)
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diff = res2 - self.clip_to_inner_circle(res, radius_factor=1)
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err_max = np.max(np.abs(diff))
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assert err_max < 1e-5, "centered_axis with clip_circle: something wrong"
|
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|
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@pytest.mark.parametrize("config", scenarios)
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def test_fbp_filters(self, config):
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for filter_name in set(fbp_filters.values()):
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if filter_name in [None, "ramlak"]:
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continue
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B = self._get_backprojector(config, self.sino_512.shape, filter_name=filter_name)
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self.apply_fbp(config, B, self.sino_512)
|
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# not sure what to check in this case
|
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|
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@pytest.mark.parametrize("config", scenarios)
|
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|
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def test_differentiated_backprojection(self, config):
|
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# test Hilbert + DBP
|
247
|
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sino_diff = np.diff(self.sino_512, axis=1, prepend=0).astype("f")
|
248
|
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# Need to translate the axis a little bit, because of non-centered differentiation.
|
249
|
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# prepend -> +0.5 ; append -> -0.5
|
250
|
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B = self._get_backprojector(config, sino_diff.shape, filter_name="hilbert", rot_center=255.5 + 0.5)
|
251
|
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rec = self.apply_fbp(config, B, sino_diff)
|
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|
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# Looks good, but all frequencies are not recovered. Use a metric like SSIM or FRC ?
|
@@ -1,133 +0,0 @@
|
|
1
|
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import numpy as np
|
2
|
-
import pytest
|
3
|
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from nabu.reconstruction.filtering import SinoFilter, filter_sinogram
|
4
|
-
from nabu.cuda.utils import __has_pycuda__
|
5
|
-
from nabu.opencl.utils import __has_pyopencl__
|
6
|
-
from nabu.testutils import get_data, generate_tests_scenarios, __do_long_tests__
|
7
|
-
|
8
|
-
if __has_pycuda__:
|
9
|
-
from nabu.cuda.utils import get_cuda_context
|
10
|
-
from nabu.reconstruction.filtering_cuda import CudaSinoFilter
|
11
|
-
import pycuda.gpuarray as garray
|
12
|
-
if __has_pyopencl__:
|
13
|
-
import pyopencl.array as parray
|
14
|
-
from nabu.opencl.processing import OpenCLProcessing
|
15
|
-
from nabu.reconstruction.filtering_opencl import OpenCLSinoFilter, __has_vkfft__
|
16
|
-
|
17
|
-
filters_to_test = ["ramlak", "shepp-logan", "tukey"]
|
18
|
-
padding_modes_to_test = ["constant", "edge"]
|
19
|
-
if __do_long_tests__:
|
20
|
-
filters_to_test = ["ramlak", "shepp-logan", "cosine", "hamming", "hann", "tukey", "lanczos"]
|
21
|
-
padding_modes_to_test = SinoFilter.available_padding_modes
|
22
|
-
|
23
|
-
tests_scenarios = generate_tests_scenarios(
|
24
|
-
{
|
25
|
-
"filter_name": filters_to_test,
|
26
|
-
"padding_mode": padding_modes_to_test,
|
27
|
-
"output_provided": [True, False],
|
28
|
-
}
|
29
|
-
)
|
30
|
-
|
31
|
-
|
32
|
-
@pytest.fixture(scope="class")
|
33
|
-
def bootstrap(request):
|
34
|
-
cls = request.cls
|
35
|
-
cls.sino = get_data("mri_sino500.npz")["data"]
|
36
|
-
if __has_pycuda__:
|
37
|
-
cls.ctx_cuda = get_cuda_context(cleanup_at_exit=False)
|
38
|
-
cls.sino_cuda = garray.to_gpu(cls.sino)
|
39
|
-
if __has_pyopencl__:
|
40
|
-
cls.cl = OpenCLProcessing(device_type="all")
|
41
|
-
cls.sino_cl = parray.to_device(cls.cl.queue, cls.sino)
|
42
|
-
|
43
|
-
yield
|
44
|
-
|
45
|
-
if __has_pycuda__:
|
46
|
-
cls.ctx_cuda.pop()
|
47
|
-
|
48
|
-
|
49
|
-
@pytest.mark.usefixtures("bootstrap")
|
50
|
-
class TestSinoFilter:
|
51
|
-
@pytest.mark.parametrize("config", tests_scenarios)
|
52
|
-
def test_filter(self, config):
|
53
|
-
sino = self.sino
|
54
|
-
|
55
|
-
sino_filter = SinoFilter(
|
56
|
-
sino.shape,
|
57
|
-
filter_name=config["filter_name"],
|
58
|
-
padding_mode=config["padding_mode"],
|
59
|
-
)
|
60
|
-
if config["output_provided"]:
|
61
|
-
output = np.zeros_like(sino)
|
62
|
-
else:
|
63
|
-
output = None
|
64
|
-
res = sino_filter.filter_sino(sino, output=output)
|
65
|
-
if output is not None:
|
66
|
-
assert id(res) == id(output), "when providing output, return value must not change"
|
67
|
-
|
68
|
-
ref = filter_sinogram(
|
69
|
-
sino, sino_filter.dwidth_padded, filter_name=config["filter_name"], padding_mode=config["padding_mode"]
|
70
|
-
)
|
71
|
-
|
72
|
-
assert np.allclose(res, ref, atol=1e-6)
|
73
|
-
|
74
|
-
@pytest.mark.skipif(not (__has_pycuda__), reason="Need Cuda + pycuda to use CudaSinoFilter")
|
75
|
-
@pytest.mark.parametrize("config", tests_scenarios)
|
76
|
-
def test_cuda_filter(self, config):
|
77
|
-
sino = self.sino_cuda
|
78
|
-
|
79
|
-
sino_filter = CudaSinoFilter(
|
80
|
-
sino.shape,
|
81
|
-
filter_name=config["filter_name"],
|
82
|
-
padding_mode=config["padding_mode"],
|
83
|
-
cuda_options={"ctx": self.ctx_cuda},
|
84
|
-
)
|
85
|
-
if config["output_provided"]:
|
86
|
-
output = garray.zeros(sino.shape, "f")
|
87
|
-
else:
|
88
|
-
output = None
|
89
|
-
res = sino_filter.filter_sino(sino, output=output)
|
90
|
-
if output is not None:
|
91
|
-
assert id(res) == id(output), "when providing output, return value must not change"
|
92
|
-
|
93
|
-
ref = filter_sinogram(
|
94
|
-
self.sino, sino_filter.dwidth_padded, filter_name=config["filter_name"], padding_mode=config["padding_mode"]
|
95
|
-
)
|
96
|
-
|
97
|
-
if not np.allclose(res.get(), ref, atol=6e-5):
|
98
|
-
from spire.utils import ims
|
99
|
-
|
100
|
-
ims([res.get(), ref, res.get() - ref])
|
101
|
-
|
102
|
-
assert np.allclose(res.get(), ref, atol=6e-5), "test_cuda_filter: something wrong with config=%s" % (
|
103
|
-
str(config)
|
104
|
-
)
|
105
|
-
|
106
|
-
@pytest.mark.skipif(
|
107
|
-
not (__has_pyopencl__ and __has_vkfft__), reason="Need OpenCL + pyopencl + pyvkfft to use OpenCLSinoFilter"
|
108
|
-
)
|
109
|
-
@pytest.mark.parametrize("config", tests_scenarios)
|
110
|
-
def test_opencl_filter(self, config):
|
111
|
-
sino = self.sino_cl
|
112
|
-
|
113
|
-
sino_filter = OpenCLSinoFilter(
|
114
|
-
sino.shape,
|
115
|
-
filter_name=config["filter_name"],
|
116
|
-
padding_mode=config["padding_mode"],
|
117
|
-
opencl_options={"ctx": self.cl.ctx},
|
118
|
-
)
|
119
|
-
if config["output_provided"]:
|
120
|
-
output = parray.zeros(self.cl.queue, sino.shape, "f")
|
121
|
-
else:
|
122
|
-
output = None
|
123
|
-
res = sino_filter.filter_sino(sino, output=output)
|
124
|
-
if output is not None:
|
125
|
-
assert id(res) == id(output), "when providing output, return value must not change"
|
126
|
-
|
127
|
-
ref = filter_sinogram(
|
128
|
-
self.sino, sino_filter.dwidth_padded, filter_name=config["filter_name"], padding_mode=config["padding_mode"]
|
129
|
-
)
|
130
|
-
|
131
|
-
assert np.allclose(res.get(), ref, atol=6e-5), "test_opencl_filter: something wrong with config=%s" % (
|
132
|
-
str(config)
|
133
|
-
)
|