myokit 1.35.4__py3-none-any.whl → 1.36.1__py3-none-any.whl

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Files changed (59) hide show
  1. myokit/__init__.py +5 -3
  2. myokit/__main__.py +9 -159
  3. myokit/_config.py +2 -2
  4. myokit/_expressions.py +6 -6
  5. myokit/_model_api.py +11 -7
  6. myokit/_myokit_version.py +1 -1
  7. myokit/_protocol.py +4 -0
  8. myokit/_sim/__init__.py +1 -0
  9. myokit/_sim/cvodessim.c +321 -177
  10. myokit/_sim/cvodessim.py +107 -43
  11. myokit/_sim/mcl.h +54 -0
  12. myokit/formats/__init__.py +63 -12
  13. myokit/formats/ansic/__init__.py +2 -1
  14. myokit/formats/ansic/_ewriter.py +159 -40
  15. myokit/formats/cpp/_ewriter.py +12 -1
  16. myokit/formats/cuda/_ewriter.py +15 -51
  17. myokit/formats/easyml/_ewriter.py +26 -54
  18. myokit/formats/heka/_patchmaster.py +15 -3
  19. myokit/formats/latex/_ewriter.py +103 -88
  20. myokit/formats/latex/_exporter.py +1 -1
  21. myokit/formats/mathml/_ewriter.py +2 -2
  22. myokit/formats/matlab/_ewriter.py +50 -28
  23. myokit/formats/opencl/_ewriter.py +61 -78
  24. myokit/formats/python/_ewriter.py +81 -50
  25. myokit/formats/stan/_ewriter.py +29 -37
  26. myokit/gui/source.py +1 -1
  27. myokit/lib/hh.py +3 -0
  28. myokit/lib/markov.py +6 -0
  29. myokit/tests/__init__.py +70 -0
  30. myokit/tests/data/decker.model +59 -59
  31. myokit/tests/test_formats.py +115 -7
  32. myokit/tests/test_formats_ansic.py +344 -0
  33. myokit/tests/test_formats_axon.py +17 -0
  34. myokit/tests/test_formats_cpp.py +97 -0
  35. myokit/tests/test_formats_cuda.py +226 -0
  36. myokit/tests/test_formats_easyml.py +169 -152
  37. myokit/tests/{test_formats_exporters.py → test_formats_exporters_run.py} +1 -69
  38. myokit/tests/test_formats_html.py +1 -3
  39. myokit/tests/test_formats_latex.py +211 -0
  40. myokit/tests/test_formats_mathml_content.py +13 -0
  41. myokit/tests/test_formats_mathml_presentation.py +54 -42
  42. myokit/tests/test_formats_matlab.py +218 -0
  43. myokit/tests/test_formats_opencl.py +206 -380
  44. myokit/tests/test_formats_python.py +557 -0
  45. myokit/tests/test_formats_stan.py +175 -0
  46. myokit/tests/test_formats_sympy.py +9 -2
  47. myokit/tests/test_lib_hh.py +36 -0
  48. myokit/tests/test_lib_plots.py +0 -16
  49. myokit/tests/test_model.py +21 -1
  50. myokit/tests/test_simulation_cvodes.py +137 -56
  51. myokit/tools.py +3 -2
  52. {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/LICENSE.txt +1 -1
  53. {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/METADATA +19 -8
  54. {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/RECORD +57 -52
  55. {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/WHEEL +1 -1
  56. myokit/tests/test_formats_expression_writers.py +0 -1281
  57. myokit/tests/test_formats_importers.py +0 -53
  58. {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/entry_points.txt +0 -0
  59. {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/top_level.txt +0 -0
myokit/tests/test_formats_importers.py DELETED
@@ -1,53 +0,0 @@
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- #!/usr/bin/env python3
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- #
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- # Tests the importers for various formats
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- #
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- # This file is part of Myokit.
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- # See http://myokit.org for copyright, sharing, and licensing details.
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- #
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- import os
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- import unittest
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-
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- import myokit
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- import myokit.formats as formats
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-
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- from myokit.tests import DIR_FORMATS
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-
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-
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- class ImporterTest(unittest.TestCase):
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- """ Test shared importer functionality. """
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-
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- def test_importer_interface(self):
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- # Test listing and creating importers.
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- ims = myokit.formats.importers()
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- self.assertTrue(len(ims) > 0)
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- for i in ims:
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- self.assertIsInstance(i, str)
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- i = myokit.formats.importer(i)
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- self.assertTrue(isinstance(i, myokit.formats.Importer))
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-
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- def test_unknown(self):
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- # Test requesting an unknown importer.
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- # Test fetching using importer method
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- self.assertRaisesRegex(
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- KeyError, 'Importer not found', myokit.formats.importer, 'blip')
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-
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-
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- class AxonTest(unittest.TestCase):
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- """ Partially tests Axon formats importing. """
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-
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- def test_capability_reporting(self):
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- # Test if the right capabilities are reported.
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- i = formats.importer('abf')
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- self.assertFalse(i.supports_component())
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- self.assertFalse(i.supports_model())
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- self.assertTrue(i.supports_protocol())
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-
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- def test_protocol(self):
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- i = formats.importer('abf')
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- self.assertTrue(i.supports_protocol())
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- i.protocol(os.path.join(DIR_FORMATS, 'abf-v1.abf'))
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-
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-
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- if __name__ == '__main__':
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- unittest.main()