myokit 1.35.4__py3-none-any.whl → 1.36.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- myokit/__init__.py +5 -3
- myokit/__main__.py +9 -159
- myokit/_config.py +2 -2
- myokit/_expressions.py +6 -6
- myokit/_model_api.py +11 -7
- myokit/_myokit_version.py +1 -1
- myokit/_protocol.py +4 -0
- myokit/_sim/__init__.py +1 -0
- myokit/_sim/cvodessim.c +321 -177
- myokit/_sim/cvodessim.py +107 -43
- myokit/_sim/mcl.h +54 -0
- myokit/formats/__init__.py +63 -12
- myokit/formats/ansic/__init__.py +2 -1
- myokit/formats/ansic/_ewriter.py +159 -40
- myokit/formats/cpp/_ewriter.py +12 -1
- myokit/formats/cuda/_ewriter.py +15 -51
- myokit/formats/easyml/_ewriter.py +26 -54
- myokit/formats/heka/_patchmaster.py +15 -3
- myokit/formats/latex/_ewriter.py +103 -88
- myokit/formats/latex/_exporter.py +1 -1
- myokit/formats/mathml/_ewriter.py +2 -2
- myokit/formats/matlab/_ewriter.py +50 -28
- myokit/formats/opencl/_ewriter.py +61 -78
- myokit/formats/python/_ewriter.py +81 -50
- myokit/formats/stan/_ewriter.py +29 -37
- myokit/gui/source.py +1 -1
- myokit/lib/hh.py +3 -0
- myokit/lib/markov.py +6 -0
- myokit/tests/__init__.py +70 -0
- myokit/tests/data/decker.model +59 -59
- myokit/tests/test_formats.py +115 -7
- myokit/tests/test_formats_ansic.py +344 -0
- myokit/tests/test_formats_axon.py +17 -0
- myokit/tests/test_formats_cpp.py +97 -0
- myokit/tests/test_formats_cuda.py +226 -0
- myokit/tests/test_formats_easyml.py +169 -152
- myokit/tests/{test_formats_exporters.py → test_formats_exporters_run.py} +1 -69
- myokit/tests/test_formats_html.py +1 -3
- myokit/tests/test_formats_latex.py +211 -0
- myokit/tests/test_formats_mathml_content.py +13 -0
- myokit/tests/test_formats_mathml_presentation.py +54 -42
- myokit/tests/test_formats_matlab.py +218 -0
- myokit/tests/test_formats_opencl.py +206 -380
- myokit/tests/test_formats_python.py +557 -0
- myokit/tests/test_formats_stan.py +175 -0
- myokit/tests/test_formats_sympy.py +9 -2
- myokit/tests/test_lib_hh.py +36 -0
- myokit/tests/test_lib_plots.py +0 -16
- myokit/tests/test_model.py +21 -1
- myokit/tests/test_simulation_cvodes.py +137 -56
- myokit/tools.py +3 -2
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/LICENSE.txt +1 -1
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/METADATA +19 -8
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/RECORD +57 -52
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/WHEEL +1 -1
- myokit/tests/test_formats_expression_writers.py +0 -1281
- myokit/tests/test_formats_importers.py +0 -53
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/entry_points.txt +0 -0
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/top_level.txt +0 -0
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#!/usr/bin/env python3
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#
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# Tests the expression writer classes.
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#
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# This file is part of Myokit.
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# See http://myokit.org for copyright, sharing, and licensing details.
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#
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import unittest
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import myokit
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import myokit.formats
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import myokit.formats.ansic
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import myokit.formats.cpp
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import myokit.formats.latex
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import myokit.formats.matlab
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import myokit.formats.python
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import myokit.formats.stan
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class ExpressionWriterTest(unittest.TestCase):
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""" Test shared expression writer functionality. """
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def test_ewriter_interface(self):
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# Test listing and creating expression writers.
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# Test listing
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es = myokit.formats.ewriters()
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self.assertTrue(len(es) > 0)
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# Create one of each
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for e in es:
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self.assertIsInstance(e, str)
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e = myokit.formats.ewriter(e)
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self.assertTrue(isinstance(e, myokit.formats.ExpressionWriter))
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def test_unknown(self):
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# Test requesting an unknown expression writer.
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# Test fetching using ewriter method
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self.assertRaisesRegex(
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KeyError, 'Expression writer not found', myokit.formats.ewriter,
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'dada')
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class AnsicExpressionWriterTest(unittest.TestCase):
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""" Test the Ansi C ewriter class. """
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def test_all(self):
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w = myokit.formats.ansic.AnsiCExpressionWriter()
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model = myokit.Model()
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component = model.add_component('c')
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avar = component.add_variable('a')
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# Name
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a = myokit.Name(avar)
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self.assertEqual(w.ex(a), 'c.a')
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# Number with unit
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b = myokit.Number('12', 'pF')
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self.assertEqual(w.ex(b), '12.0')
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# Prefix plus
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x = myokit.PrefixPlus(b)
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self.assertEqual(w.ex(x), '12.0')
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# Prefix minus
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x = myokit.PrefixMinus(b)
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self.assertEqual(w.ex(x), '(-12.0)')
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# Plus
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x = myokit.Plus(a, b)
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self.assertEqual(w.ex(x), 'c.a + 12.0')
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# Minus
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x = myokit.Minus(a, b)
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self.assertEqual(w.ex(x), 'c.a - 12.0')
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# Multiply
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x = myokit.Multiply(a, b)
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self.assertEqual(w.ex(x), 'c.a * 12.0')
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# Divide
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x = myokit.Divide(a, b)
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self.assertEqual(w.ex(x), 'c.a / 12.0')
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# Quotient
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x = myokit.Quotient(a, b)
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self.assertEqual(w.ex(x), 'floor(c.a / 12.0)')
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# Remainder
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x = myokit.Remainder(a, b)
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self.assertEqual(w.ex(x), 'c.a - 12.0 * (floor(c.a / 12.0))')
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# Power
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x = myokit.Power(a, b)
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self.assertEqual(w.ex(x), 'pow(c.a, 12.0)')
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# Sqrt
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x = myokit.Sqrt(b)
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self.assertEqual(w.ex(x), 'sqrt(12.0)')
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# Exp
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x = myokit.Exp(a)
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self.assertEqual(w.ex(x), 'exp(c.a)')
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# Log(a)
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x = myokit.Log(b)
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self.assertEqual(w.ex(x), 'log(12.0)')
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# Log(a, b)
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x = myokit.Log(a, b)
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self.assertEqual(w.ex(x), '(log(c.a) / log(12.0))')
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# Log10
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x = myokit.Log10(b)
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self.assertEqual(w.ex(x), 'log10(12.0)')
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# Sin
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x = myokit.Sin(b)
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self.assertEqual(w.ex(x), 'sin(12.0)')
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# Cos
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x = myokit.Cos(b)
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self.assertEqual(w.ex(x), 'cos(12.0)')
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# Tan
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x = myokit.Tan(b)
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self.assertEqual(w.ex(x), 'tan(12.0)')
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# ASin
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x = myokit.ASin(b)
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self.assertEqual(w.ex(x), 'asin(12.0)')
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# ACos
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x = myokit.ACos(b)
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self.assertEqual(w.ex(x), 'acos(12.0)')
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# ATan
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x = myokit.ATan(b)
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self.assertEqual(w.ex(x), 'atan(12.0)')
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# Floor
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x = myokit.Floor(b)
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self.assertEqual(w.ex(x), 'floor(12.0)')
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# Ceil
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x = myokit.Ceil(b)
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self.assertEqual(w.ex(x), 'ceil(12.0)')
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# Abs
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x = myokit.Abs(b)
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self.assertEqual(w.ex(x), 'fabs(12.0)')
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# Equal
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x = myokit.Equal(a, b)
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self.assertEqual(w.ex(x), '(c.a == 12.0)')
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# NotEqual
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x = myokit.NotEqual(a, b)
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self.assertEqual(w.ex(x), '(c.a != 12.0)')
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# More
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x = myokit.More(a, b)
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self.assertEqual(w.ex(x), '(c.a > 12.0)')
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# Less
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x = myokit.Less(a, b)
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self.assertEqual(w.ex(x), '(c.a < 12.0)')
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# MoreEqual
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x = myokit.MoreEqual(a, b)
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self.assertEqual(w.ex(x), '(c.a >= 12.0)')
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# LessEqual
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x = myokit.LessEqual(a, b)
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self.assertEqual(w.ex(x), '(c.a <= 12.0)')
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# Not
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cond1 = myokit.parse_expression('5 > 3')
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cond2 = myokit.parse_expression('2 < 1')
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x = myokit.Not(cond1)
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self.assertEqual(w.ex(x), '!((5.0 > 3.0))')
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# And
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x = myokit.And(cond1, cond2)
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self.assertEqual(w.ex(x), '((5.0 > 3.0) && (2.0 < 1.0))')
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# Or
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x = myokit.Or(cond1, cond2)
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self.assertEqual(w.ex(x), '((5.0 > 3.0) || (2.0 < 1.0))')
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# If
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x = myokit.If(cond1, a, b)
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self.assertEqual(w.ex(x), '((5.0 > 3.0) ? c.a : 12.0)')
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# Piecewise
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c = myokit.Number(1)
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x = myokit.Piecewise(cond1, a, cond2, b, c)
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self.assertEqual(
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w.ex(x),
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'((5.0 > 3.0) ? c.a : ((2.0 < 1.0) ? 12.0 : 1.0))')
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# If/Piecewise with special function
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w.set_condition_function('ifthenelse')
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x = myokit.If(cond1, a, b)
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self.assertEqual(w.ex(x), 'ifthenelse((5.0 > 3.0), c.a, 12.0)')
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# Piecewise
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c = myokit.Number(1)
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x = myokit.Piecewise(cond1, a, cond2, b, c)
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self.assertEqual(
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w.ex(x),
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'ifthenelse((5.0 > 3.0), c.a, ifthenelse((2.0 < 1.0), 12.0, 1.0))')
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# Test fetching using ewriter method
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w = myokit.formats.ewriter('ansic')
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self.assertIsInstance(w, myokit.formats.ansic.AnsiCExpressionWriter)
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# Test without a Myokit expression
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self.assertRaisesRegex(
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ValueError, 'Unknown expression type', w.ex, 7)
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class CppExpressionWriterTest(unittest.TestCase):
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""" Test the C++ ewriter class. """
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def test_all(self):
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w = myokit.formats.cpp.CppExpressionWriter()
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model = myokit.Model()
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component = model.add_component('c')
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avar = component.add_variable('a')
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# Name
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a = myokit.Name(avar)
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self.assertEqual(w.ex(a), 'c.a')
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# Number with unit
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b = myokit.Number('12', 'pF')
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self.assertEqual(w.ex(b), '12.0')
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# Prefix plus
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x = myokit.PrefixPlus(b)
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self.assertEqual(w.ex(x), '12.0')
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# Prefix minus
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x = myokit.PrefixMinus(b)
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self.assertEqual(w.ex(x), '(-12.0)')
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# Plus
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x = myokit.Plus(a, b)
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self.assertEqual(w.ex(x), 'c.a + 12.0')
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# Minus
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x = myokit.Minus(a, b)
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self.assertEqual(w.ex(x), 'c.a - 12.0')
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# Multiply
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x = myokit.Multiply(a, b)
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self.assertEqual(w.ex(x), 'c.a * 12.0')
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# Divide
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x = myokit.Divide(a, b)
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self.assertEqual(w.ex(x), 'c.a / 12.0')
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# Quotient
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x = myokit.Quotient(a, b)
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self.assertEqual(w.ex(x), 'floor(c.a / 12.0)')
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# Remainder
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x = myokit.Remainder(a, b)
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self.assertEqual(w.ex(x), 'c.a - 12.0 * (floor(c.a / 12.0))')
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# Power
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x = myokit.Power(a, b)
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self.assertEqual(w.ex(x), 'pow(c.a, 12.0)')
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# Sqrt
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x = myokit.Sqrt(b)
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self.assertEqual(w.ex(x), 'sqrt(12.0)')
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# Exp
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x = myokit.Exp(a)
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self.assertEqual(w.ex(x), 'exp(c.a)')
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# Log(a)
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x = myokit.Log(b)
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self.assertEqual(w.ex(x), 'log(12.0)')
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# Log(a, b)
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x = myokit.Log(a, b)
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self.assertEqual(w.ex(x), '(log(c.a) / log(12.0))')
|
|
256
|
-
# Log10
|
|
257
|
-
x = myokit.Log10(b)
|
|
258
|
-
self.assertEqual(w.ex(x), 'log10(12.0)')
|
|
259
|
-
|
|
260
|
-
# Sin
|
|
261
|
-
x = myokit.Sin(b)
|
|
262
|
-
self.assertEqual(w.ex(x), 'sin(12.0)')
|
|
263
|
-
# Cos
|
|
264
|
-
x = myokit.Cos(b)
|
|
265
|
-
self.assertEqual(w.ex(x), 'cos(12.0)')
|
|
266
|
-
# Tan
|
|
267
|
-
x = myokit.Tan(b)
|
|
268
|
-
self.assertEqual(w.ex(x), 'tan(12.0)')
|
|
269
|
-
# ASin
|
|
270
|
-
x = myokit.ASin(b)
|
|
271
|
-
self.assertEqual(w.ex(x), 'asin(12.0)')
|
|
272
|
-
# ACos
|
|
273
|
-
x = myokit.ACos(b)
|
|
274
|
-
self.assertEqual(w.ex(x), 'acos(12.0)')
|
|
275
|
-
# ATan
|
|
276
|
-
x = myokit.ATan(b)
|
|
277
|
-
self.assertEqual(w.ex(x), 'atan(12.0)')
|
|
278
|
-
|
|
279
|
-
# Floor
|
|
280
|
-
x = myokit.Floor(b)
|
|
281
|
-
self.assertEqual(w.ex(x), 'floor(12.0)')
|
|
282
|
-
# Ceil
|
|
283
|
-
x = myokit.Ceil(b)
|
|
284
|
-
self.assertEqual(w.ex(x), 'ceil(12.0)')
|
|
285
|
-
# Abs
|
|
286
|
-
x = myokit.Abs(b)
|
|
287
|
-
self.assertEqual(w.ex(x), 'fabs(12.0)')
|
|
288
|
-
|
|
289
|
-
# Equal
|
|
290
|
-
x = myokit.Equal(a, b)
|
|
291
|
-
self.assertEqual(w.ex(x), '(c.a == 12.0)')
|
|
292
|
-
# NotEqual
|
|
293
|
-
x = myokit.NotEqual(a, b)
|
|
294
|
-
self.assertEqual(w.ex(x), '(c.a != 12.0)')
|
|
295
|
-
# More
|
|
296
|
-
x = myokit.More(a, b)
|
|
297
|
-
self.assertEqual(w.ex(x), '(c.a > 12.0)')
|
|
298
|
-
# Less
|
|
299
|
-
x = myokit.Less(a, b)
|
|
300
|
-
self.assertEqual(w.ex(x), '(c.a < 12.0)')
|
|
301
|
-
# MoreEqual
|
|
302
|
-
x = myokit.MoreEqual(a, b)
|
|
303
|
-
self.assertEqual(w.ex(x), '(c.a >= 12.0)')
|
|
304
|
-
# LessEqual
|
|
305
|
-
x = myokit.LessEqual(a, b)
|
|
306
|
-
self.assertEqual(w.ex(x), '(c.a <= 12.0)')
|
|
307
|
-
|
|
308
|
-
# Not
|
|
309
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
310
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
311
|
-
x = myokit.Not(cond1)
|
|
312
|
-
self.assertEqual(w.ex(x), '!((5.0 > 3.0))')
|
|
313
|
-
# And
|
|
314
|
-
x = myokit.And(cond1, cond2)
|
|
315
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) && (2.0 < 1.0))')
|
|
316
|
-
# Or
|
|
317
|
-
x = myokit.Or(cond1, cond2)
|
|
318
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) || (2.0 < 1.0))')
|
|
319
|
-
|
|
320
|
-
# If
|
|
321
|
-
x = myokit.If(cond1, a, b)
|
|
322
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) ? c.a : 12.0)')
|
|
323
|
-
# Piecewise
|
|
324
|
-
c = myokit.Number(1)
|
|
325
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
326
|
-
self.assertEqual(
|
|
327
|
-
w.ex(x),
|
|
328
|
-
'((5.0 > 3.0) ? c.a : ((2.0 < 1.0) ? 12.0 : 1.0))')
|
|
329
|
-
|
|
330
|
-
# Test fetching using ewriter method
|
|
331
|
-
w = myokit.formats.ewriter('cpp')
|
|
332
|
-
self.assertIsInstance(w, myokit.formats.cpp.CppExpressionWriter)
|
|
333
|
-
|
|
334
|
-
# Test without a Myokit expression
|
|
335
|
-
self.assertRaisesRegex(
|
|
336
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
337
|
-
|
|
338
|
-
|
|
339
|
-
class CudaExpressionWriterTest(unittest.TestCase):
|
|
340
|
-
""" Test the CUDA ewriter class. """
|
|
341
|
-
|
|
342
|
-
def test_all(self):
|
|
343
|
-
# Single and double precision
|
|
344
|
-
ws = myokit.formats.cuda.CudaExpressionWriter()
|
|
345
|
-
wd = myokit.formats.cuda.CudaExpressionWriter(myokit.DOUBLE_PRECISION)
|
|
346
|
-
|
|
347
|
-
model = myokit.Model()
|
|
348
|
-
component = model.add_component('c')
|
|
349
|
-
avar = component.add_variable('a')
|
|
350
|
-
|
|
351
|
-
# Name
|
|
352
|
-
a = myokit.Name(avar)
|
|
353
|
-
self.assertEqual(ws.ex(a), 'c.a')
|
|
354
|
-
self.assertEqual(wd.ex(a), 'c.a')
|
|
355
|
-
# Number with unit
|
|
356
|
-
b = myokit.Number('12', 'pF')
|
|
357
|
-
self.assertEqual(ws.ex(b), '12.0f')
|
|
358
|
-
self.assertEqual(wd.ex(b), '12.0')
|
|
359
|
-
|
|
360
|
-
# Prefix plus
|
|
361
|
-
x = myokit.PrefixPlus(b)
|
|
362
|
-
self.assertEqual(ws.ex(x), '12.0f')
|
|
363
|
-
self.assertEqual(wd.ex(x), '12.0')
|
|
364
|
-
# Prefix minus
|
|
365
|
-
x = myokit.PrefixMinus(b)
|
|
366
|
-
self.assertEqual(ws.ex(x), '(-12.0f)')
|
|
367
|
-
self.assertEqual(wd.ex(x), '(-12.0)')
|
|
368
|
-
|
|
369
|
-
# Plus
|
|
370
|
-
x = myokit.Plus(a, b)
|
|
371
|
-
self.assertEqual(ws.ex(x), 'c.a + 12.0f')
|
|
372
|
-
self.assertEqual(wd.ex(x), 'c.a + 12.0')
|
|
373
|
-
# Minus
|
|
374
|
-
x = myokit.Minus(a, b)
|
|
375
|
-
self.assertEqual(ws.ex(x), 'c.a - 12.0f')
|
|
376
|
-
self.assertEqual(wd.ex(x), 'c.a - 12.0')
|
|
377
|
-
# Multiply
|
|
378
|
-
x = myokit.Multiply(a, b)
|
|
379
|
-
self.assertEqual(ws.ex(x), 'c.a * 12.0f')
|
|
380
|
-
self.assertEqual(wd.ex(x), 'c.a * 12.0')
|
|
381
|
-
# Divide
|
|
382
|
-
x = myokit.Divide(a, b)
|
|
383
|
-
self.assertEqual(ws.ex(x), 'c.a / 12.0f')
|
|
384
|
-
self.assertEqual(wd.ex(x), 'c.a / 12.0')
|
|
385
|
-
|
|
386
|
-
# Quotient
|
|
387
|
-
x = myokit.Quotient(a, b)
|
|
388
|
-
self.assertEqual(ws.ex(x), 'floorf(c.a / 12.0f)')
|
|
389
|
-
self.assertEqual(wd.ex(x), 'floor(c.a / 12.0)')
|
|
390
|
-
# Remainder
|
|
391
|
-
x = myokit.Remainder(a, b)
|
|
392
|
-
self.assertEqual(ws.ex(x), 'c.a - 12.0f * (floorf(c.a / 12.0f))')
|
|
393
|
-
self.assertEqual(wd.ex(x), 'c.a - 12.0 * (floor(c.a / 12.0))')
|
|
394
|
-
|
|
395
|
-
# Power
|
|
396
|
-
x = myokit.Power(a, b)
|
|
397
|
-
self.assertEqual(ws.ex(x), 'powf(c.a, 12.0f)')
|
|
398
|
-
self.assertEqual(wd.ex(x), 'pow(c.a, 12.0)')
|
|
399
|
-
# Square
|
|
400
|
-
x = myokit.Power(a, myokit.Number(2))
|
|
401
|
-
self.assertEqual(ws.ex(x), '(c.a * c.a)')
|
|
402
|
-
self.assertEqual(wd.ex(x), '(c.a * c.a)')
|
|
403
|
-
# Square with brackets
|
|
404
|
-
x = myokit.Power(myokit.Plus(a, b), myokit.Number(2))
|
|
405
|
-
self.assertEqual(ws.ex(x), '((c.a + 12.0f) * (c.a + 12.0f))')
|
|
406
|
-
self.assertEqual(wd.ex(x), '((c.a + 12.0) * (c.a + 12.0))')
|
|
407
|
-
# Sqrt
|
|
408
|
-
x = myokit.Sqrt(b)
|
|
409
|
-
self.assertEqual(ws.ex(x), 'sqrtf(12.0f)')
|
|
410
|
-
self.assertEqual(wd.ex(x), 'sqrt(12.0)')
|
|
411
|
-
# Exp
|
|
412
|
-
x = myokit.Exp(a)
|
|
413
|
-
self.assertEqual(ws.ex(x), 'expf(c.a)')
|
|
414
|
-
self.assertEqual(wd.ex(x), 'exp(c.a)')
|
|
415
|
-
# Log(a)
|
|
416
|
-
x = myokit.Log(b)
|
|
417
|
-
self.assertEqual(ws.ex(x), 'logf(12.0f)')
|
|
418
|
-
self.assertEqual(wd.ex(x), 'log(12.0)')
|
|
419
|
-
# Log(a, b)
|
|
420
|
-
x = myokit.Log(a, b)
|
|
421
|
-
self.assertEqual(ws.ex(x), '(logf(c.a) / logf(12.0f))')
|
|
422
|
-
self.assertEqual(wd.ex(x), '(log(c.a) / log(12.0))')
|
|
423
|
-
# Log10
|
|
424
|
-
x = myokit.Log10(b)
|
|
425
|
-
self.assertEqual(ws.ex(x), 'log10f(12.0f)')
|
|
426
|
-
self.assertEqual(wd.ex(x), 'log10(12.0)')
|
|
427
|
-
|
|
428
|
-
# Sin
|
|
429
|
-
x = myokit.Sin(b)
|
|
430
|
-
self.assertEqual(ws.ex(x), 'sinf(12.0f)')
|
|
431
|
-
self.assertEqual(wd.ex(x), 'sin(12.0)')
|
|
432
|
-
# Cos
|
|
433
|
-
x = myokit.Cos(b)
|
|
434
|
-
self.assertEqual(ws.ex(x), 'cosf(12.0f)')
|
|
435
|
-
self.assertEqual(wd.ex(x), 'cos(12.0)')
|
|
436
|
-
# Tan
|
|
437
|
-
x = myokit.Tan(b)
|
|
438
|
-
self.assertEqual(ws.ex(x), 'tanf(12.0f)')
|
|
439
|
-
self.assertEqual(wd.ex(x), 'tan(12.0)')
|
|
440
|
-
# ASin
|
|
441
|
-
x = myokit.ASin(b)
|
|
442
|
-
self.assertEqual(ws.ex(x), 'asinf(12.0f)')
|
|
443
|
-
self.assertEqual(wd.ex(x), 'asin(12.0)')
|
|
444
|
-
# ACos
|
|
445
|
-
x = myokit.ACos(b)
|
|
446
|
-
self.assertEqual(ws.ex(x), 'acosf(12.0f)')
|
|
447
|
-
self.assertEqual(wd.ex(x), 'acos(12.0)')
|
|
448
|
-
# ATan
|
|
449
|
-
x = myokit.ATan(b)
|
|
450
|
-
self.assertEqual(ws.ex(x), 'atanf(12.0f)')
|
|
451
|
-
self.assertEqual(wd.ex(x), 'atan(12.0)')
|
|
452
|
-
|
|
453
|
-
# Floor
|
|
454
|
-
x = myokit.Floor(b)
|
|
455
|
-
self.assertEqual(ws.ex(x), 'floorf(12.0f)')
|
|
456
|
-
self.assertEqual(wd.ex(x), 'floor(12.0)')
|
|
457
|
-
# Ceil
|
|
458
|
-
x = myokit.Ceil(b)
|
|
459
|
-
self.assertEqual(ws.ex(x), 'ceilf(12.0f)')
|
|
460
|
-
self.assertEqual(wd.ex(x), 'ceil(12.0)')
|
|
461
|
-
# Abs
|
|
462
|
-
x = myokit.Abs(b)
|
|
463
|
-
self.assertEqual(ws.ex(x), 'fabsf(12.0f)')
|
|
464
|
-
self.assertEqual(wd.ex(x), 'fabs(12.0)')
|
|
465
|
-
|
|
466
|
-
# Equal
|
|
467
|
-
x = myokit.Equal(a, b)
|
|
468
|
-
self.assertEqual(ws.ex(x), '(c.a == 12.0f)')
|
|
469
|
-
self.assertEqual(wd.ex(x), '(c.a == 12.0)')
|
|
470
|
-
# NotEqual
|
|
471
|
-
x = myokit.NotEqual(a, b)
|
|
472
|
-
self.assertEqual(ws.ex(x), '(c.a != 12.0f)')
|
|
473
|
-
self.assertEqual(wd.ex(x), '(c.a != 12.0)')
|
|
474
|
-
# More
|
|
475
|
-
x = myokit.More(a, b)
|
|
476
|
-
self.assertEqual(ws.ex(x), '(c.a > 12.0f)')
|
|
477
|
-
self.assertEqual(wd.ex(x), '(c.a > 12.0)')
|
|
478
|
-
# Less
|
|
479
|
-
x = myokit.Less(a, b)
|
|
480
|
-
self.assertEqual(ws.ex(x), '(c.a < 12.0f)')
|
|
481
|
-
self.assertEqual(wd.ex(x), '(c.a < 12.0)')
|
|
482
|
-
# MoreEqual
|
|
483
|
-
x = myokit.MoreEqual(a, b)
|
|
484
|
-
self.assertEqual(ws.ex(x), '(c.a >= 12.0f)')
|
|
485
|
-
self.assertEqual(wd.ex(x), '(c.a >= 12.0)')
|
|
486
|
-
# LessEqual
|
|
487
|
-
x = myokit.LessEqual(a, b)
|
|
488
|
-
self.assertEqual(ws.ex(x), '(c.a <= 12.0f)')
|
|
489
|
-
self.assertEqual(wd.ex(x), '(c.a <= 12.0)')
|
|
490
|
-
|
|
491
|
-
# Not
|
|
492
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
493
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
494
|
-
x = myokit.Not(cond1)
|
|
495
|
-
self.assertEqual(ws.ex(x), '!((5.0f > 3.0f))')
|
|
496
|
-
self.assertEqual(wd.ex(x), '!((5.0 > 3.0))')
|
|
497
|
-
# And
|
|
498
|
-
x = myokit.And(cond1, cond2)
|
|
499
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) && (2.0f < 1.0f))')
|
|
500
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) && (2.0 < 1.0))')
|
|
501
|
-
# Or
|
|
502
|
-
x = myokit.Or(cond1, cond2)
|
|
503
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) || (2.0f < 1.0f))')
|
|
504
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) || (2.0 < 1.0))')
|
|
505
|
-
|
|
506
|
-
# If
|
|
507
|
-
x = myokit.If(cond1, a, b)
|
|
508
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) ? c.a : 12.0f)')
|
|
509
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) ? c.a : 12.0)')
|
|
510
|
-
# Piecewise
|
|
511
|
-
c = myokit.Number(1)
|
|
512
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
513
|
-
self.assertEqual(
|
|
514
|
-
ws.ex(x),
|
|
515
|
-
'((5.0f > 3.0f) ? c.a : ((2.0f < 1.0f) ? 12.0f : 1.0f))')
|
|
516
|
-
self.assertEqual(
|
|
517
|
-
wd.ex(x),
|
|
518
|
-
'((5.0 > 3.0) ? c.a : ((2.0 < 1.0) ? 12.0 : 1.0))')
|
|
519
|
-
|
|
520
|
-
# Test fetching using ewriter method
|
|
521
|
-
w = myokit.formats.ewriter('cuda')
|
|
522
|
-
self.assertIsInstance(w, myokit.formats.cuda.CudaExpressionWriter)
|
|
523
|
-
|
|
524
|
-
# Test without a Myokit expression
|
|
525
|
-
self.assertRaisesRegex(
|
|
526
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
527
|
-
|
|
528
|
-
|
|
529
|
-
class LatexExpressionWriterTest(unittest.TestCase):
|
|
530
|
-
""" Test the Latex ewriter class. """
|
|
531
|
-
|
|
532
|
-
def test_all(self):
|
|
533
|
-
w = myokit.formats.latex.LatexExpressionWriter()
|
|
534
|
-
|
|
535
|
-
model = myokit.Model()
|
|
536
|
-
component = model.add_component('c')
|
|
537
|
-
avar = component.add_variable('a')
|
|
538
|
-
|
|
539
|
-
# Model needs to be validated --> sets unames
|
|
540
|
-
avar.set_rhs(12)
|
|
541
|
-
avar.set_binding('time')
|
|
542
|
-
model.validate()
|
|
543
|
-
|
|
544
|
-
# Name
|
|
545
|
-
a = myokit.Name(avar)
|
|
546
|
-
self.assertEqual(w.ex(a), '\\text{a}')
|
|
547
|
-
# Number with unit
|
|
548
|
-
b = myokit.Number('12', 'pF')
|
|
549
|
-
self.assertEqual(w.ex(b), '12.0')
|
|
550
|
-
|
|
551
|
-
# Prefix plus
|
|
552
|
-
x = myokit.PrefixPlus(b)
|
|
553
|
-
self.assertEqual(w.ex(x), '12.0')
|
|
554
|
-
# Prefix minus
|
|
555
|
-
x = myokit.PrefixMinus(b)
|
|
556
|
-
self.assertEqual(w.ex(x), '\\left(-12.0\\right)')
|
|
557
|
-
# Prefix minus with bracket
|
|
558
|
-
x = myokit.PrefixMinus(myokit.Plus(a, b))
|
|
559
|
-
self.assertEqual(
|
|
560
|
-
w.ex(x), '\\left(-\\left(\\text{a}+12.0\\right)\\right)')
|
|
561
|
-
|
|
562
|
-
# Plus
|
|
563
|
-
x = myokit.Plus(a, b)
|
|
564
|
-
self.assertEqual(w.ex(x), '\\text{a}+12.0')
|
|
565
|
-
# Minus
|
|
566
|
-
x = myokit.Minus(a, b)
|
|
567
|
-
self.assertEqual(w.ex(x), '\\text{a}-12.0')
|
|
568
|
-
# Multiply
|
|
569
|
-
x = myokit.Multiply(a, b)
|
|
570
|
-
self.assertEqual(w.ex(x), '\\text{a}*12.0')
|
|
571
|
-
# Divide
|
|
572
|
-
x = myokit.Divide(a, b)
|
|
573
|
-
self.assertEqual(w.ex(x), '\\frac{\\text{a}}{12.0}')
|
|
574
|
-
|
|
575
|
-
# Quotient
|
|
576
|
-
# Not supported in latex!
|
|
577
|
-
x = myokit.Quotient(a, b)
|
|
578
|
-
self.assertEqual(
|
|
579
|
-
w.ex(x), '\\left\\lfloor\\frac{\\text{a}}{12.0}\\right\\rfloor')
|
|
580
|
-
# Remainder
|
|
581
|
-
x = myokit.Remainder(a, b)
|
|
582
|
-
self.assertEqual(w.ex(x), '\\bmod\\left(\\text{a},12.0\\right)')
|
|
583
|
-
|
|
584
|
-
# Power
|
|
585
|
-
x = myokit.Power(a, b)
|
|
586
|
-
self.assertEqual(w.ex(x), '\\text{a}^{12.0}')
|
|
587
|
-
# Power with brackets
|
|
588
|
-
x = myokit.Power(myokit.Plus(a, b), b)
|
|
589
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}+12.0\\right)^{12.0}')
|
|
590
|
-
# Sqrt
|
|
591
|
-
x = myokit.Sqrt(b)
|
|
592
|
-
self.assertEqual(w.ex(x), '\\sqrt{12.0}')
|
|
593
|
-
# Exp
|
|
594
|
-
x = myokit.Exp(a)
|
|
595
|
-
self.assertEqual(w.ex(x), '\\exp\\left(\\text{a}\\right)')
|
|
596
|
-
# Log(a)
|
|
597
|
-
x = myokit.Log(b)
|
|
598
|
-
self.assertEqual(w.ex(x), '\\log\\left(12.0\\right)')
|
|
599
|
-
# Log(a, b)
|
|
600
|
-
x = myokit.Log(a, b)
|
|
601
|
-
self.assertEqual(w.ex(x), '\\log_{12.0}\\left(\\text{a}\\right)')
|
|
602
|
-
# Log10
|
|
603
|
-
x = myokit.Log10(b)
|
|
604
|
-
self.assertEqual(w.ex(x), '\\log_{10.0}\\left(12.0\\right)')
|
|
605
|
-
|
|
606
|
-
# Sin
|
|
607
|
-
x = myokit.Sin(b)
|
|
608
|
-
self.assertEqual(w.ex(x), '\\sin\\left(12.0\\right)')
|
|
609
|
-
# Cos
|
|
610
|
-
x = myokit.Cos(b)
|
|
611
|
-
self.assertEqual(w.ex(x), '\\cos\\left(12.0\\right)')
|
|
612
|
-
# Tan
|
|
613
|
-
x = myokit.Tan(b)
|
|
614
|
-
self.assertEqual(w.ex(x), '\\tan\\left(12.0\\right)')
|
|
615
|
-
# ASin
|
|
616
|
-
x = myokit.ASin(b)
|
|
617
|
-
self.assertEqual(w.ex(x), '\\arcsin\\left(12.0\\right)')
|
|
618
|
-
# ACos
|
|
619
|
-
x = myokit.ACos(b)
|
|
620
|
-
self.assertEqual(w.ex(x), '\\arccos\\left(12.0\\right)')
|
|
621
|
-
# ATan
|
|
622
|
-
x = myokit.ATan(b)
|
|
623
|
-
self.assertEqual(w.ex(x), '\\arctan\\left(12.0\\right)')
|
|
624
|
-
|
|
625
|
-
# Floor
|
|
626
|
-
x = myokit.Floor(b)
|
|
627
|
-
self.assertEqual(w.ex(x), '\\left\\lfloor{12.0}\\right\\rfloor')
|
|
628
|
-
# Ceil
|
|
629
|
-
x = myokit.Ceil(b)
|
|
630
|
-
self.assertEqual(w.ex(x), '\\left\\lceil{12.0}\\right\\rceil')
|
|
631
|
-
# Abs
|
|
632
|
-
x = myokit.Abs(b)
|
|
633
|
-
self.assertEqual(w.ex(x), '\\lvert{12.0}\\rvert')
|
|
634
|
-
|
|
635
|
-
# Equal
|
|
636
|
-
x = myokit.Equal(a, b)
|
|
637
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}=12.0\\right)')
|
|
638
|
-
# NotEqual
|
|
639
|
-
x = myokit.NotEqual(a, b)
|
|
640
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}\\neq12.0\\right)')
|
|
641
|
-
# More
|
|
642
|
-
x = myokit.More(a, b)
|
|
643
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}>12.0\\right)')
|
|
644
|
-
# Less
|
|
645
|
-
x = myokit.Less(a, b)
|
|
646
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}<12.0\\right)')
|
|
647
|
-
# MoreEqual
|
|
648
|
-
x = myokit.MoreEqual(a, b)
|
|
649
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}\\geq12.0\\right)')
|
|
650
|
-
# LessEqual
|
|
651
|
-
x = myokit.LessEqual(a, b)
|
|
652
|
-
self.assertEqual(w.ex(x), '\\left(\\text{a}\\leq12.0\\right)')
|
|
653
|
-
|
|
654
|
-
# Not
|
|
655
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
656
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
657
|
-
x = myokit.Not(cond1)
|
|
658
|
-
self.assertEqual(
|
|
659
|
-
w.ex(x), '\\not\\left(\\left(5.0>3.0\\right)\\right)')
|
|
660
|
-
# And
|
|
661
|
-
x = myokit.And(cond1, cond2)
|
|
662
|
-
self.assertEqual(
|
|
663
|
-
w.ex(x),
|
|
664
|
-
'\\left(\\left(5.0>3.0\\right)\\and'
|
|
665
|
-
'\\left(2.0<1.0\\right)\\right)')
|
|
666
|
-
# Or
|
|
667
|
-
x = myokit.Or(cond1, cond2)
|
|
668
|
-
self.assertEqual(
|
|
669
|
-
w.ex(x),
|
|
670
|
-
'\\left(\\left(5.0>3.0\\right)\\or'
|
|
671
|
-
'\\left(2.0<1.0\\right)\\right)')
|
|
672
|
-
# If
|
|
673
|
-
x = myokit.If(cond1, a, b)
|
|
674
|
-
self.assertEqual(
|
|
675
|
-
w.ex(x), 'if\\left(\\left(5.0>3.0\\right),\\text{a},12.0\\right)')
|
|
676
|
-
# Piecewise
|
|
677
|
-
c = myokit.Number(1)
|
|
678
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
679
|
-
self.assertEqual(
|
|
680
|
-
w.ex(x),
|
|
681
|
-
'piecewise\\left(\\left(5.0>3.0\\right),\\text{a},'
|
|
682
|
-
'\\left(2.0<1.0\\right),12.0,1.0\\right)')
|
|
683
|
-
|
|
684
|
-
# Test fetching using ewriter method
|
|
685
|
-
w = myokit.formats.ewriter('latex')
|
|
686
|
-
self.assertIsInstance(w, myokit.formats.latex.LatexExpressionWriter)
|
|
687
|
-
|
|
688
|
-
# Test without a Myokit expression
|
|
689
|
-
self.assertRaisesRegex(
|
|
690
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
691
|
-
|
|
692
|
-
|
|
693
|
-
class MatlabExpressionWriterTest(unittest.TestCase):
|
|
694
|
-
""" Test the Matlab ewriter class. """
|
|
695
|
-
|
|
696
|
-
def test_all(self):
|
|
697
|
-
w = myokit.formats.matlab.MatlabExpressionWriter()
|
|
698
|
-
|
|
699
|
-
model = myokit.Model()
|
|
700
|
-
component = model.add_component('c')
|
|
701
|
-
avar = component.add_variable('a')
|
|
702
|
-
|
|
703
|
-
# Name
|
|
704
|
-
a = myokit.Name(avar)
|
|
705
|
-
self.assertEqual(w.ex(a), 'c.a')
|
|
706
|
-
# Number with unit
|
|
707
|
-
b = myokit.Number('12', 'pF')
|
|
708
|
-
self.assertEqual(w.ex(b), '12.0')
|
|
709
|
-
|
|
710
|
-
# Prefix plus
|
|
711
|
-
x = myokit.PrefixPlus(b)
|
|
712
|
-
self.assertEqual(w.ex(x), '12.0')
|
|
713
|
-
# Prefix minus
|
|
714
|
-
x = myokit.PrefixMinus(b)
|
|
715
|
-
self.assertEqual(w.ex(x), '(-12.0)')
|
|
716
|
-
|
|
717
|
-
# Plus
|
|
718
|
-
x = myokit.Plus(a, b)
|
|
719
|
-
self.assertEqual(w.ex(x), 'c.a + 12.0')
|
|
720
|
-
# Minus
|
|
721
|
-
x = myokit.Minus(a, b)
|
|
722
|
-
self.assertEqual(w.ex(x), 'c.a - 12.0')
|
|
723
|
-
# Multiply
|
|
724
|
-
x = myokit.Multiply(a, b)
|
|
725
|
-
self.assertEqual(w.ex(x), 'c.a * 12.0')
|
|
726
|
-
# Divide
|
|
727
|
-
x = myokit.Divide(a, b)
|
|
728
|
-
self.assertEqual(w.ex(x), 'c.a / 12.0')
|
|
729
|
-
|
|
730
|
-
# Quotient
|
|
731
|
-
|
|
732
|
-
x = myokit.Quotient(a, b)
|
|
733
|
-
self.assertEqual(w.ex(x), 'floor(c.a / 12.0)')
|
|
734
|
-
# Remainder
|
|
735
|
-
x = myokit.Remainder(a, b)
|
|
736
|
-
self.assertEqual(w.ex(x), 'mod(c.a, 12.0)')
|
|
737
|
-
|
|
738
|
-
# Power
|
|
739
|
-
x = myokit.Power(a, b)
|
|
740
|
-
self.assertEqual(w.ex(x), 'c.a ^ 12.0')
|
|
741
|
-
# Sqrt
|
|
742
|
-
x = myokit.Sqrt(b)
|
|
743
|
-
self.assertEqual(w.ex(x), 'sqrt(12.0)')
|
|
744
|
-
# Exp
|
|
745
|
-
x = myokit.Exp(a)
|
|
746
|
-
self.assertEqual(w.ex(x), 'exp(c.a)')
|
|
747
|
-
# Log(a)
|
|
748
|
-
x = myokit.Log(b)
|
|
749
|
-
self.assertEqual(w.ex(x), 'log(12.0)')
|
|
750
|
-
# Log(a, b)
|
|
751
|
-
x = myokit.Log(a, b)
|
|
752
|
-
self.assertEqual(w.ex(x), '(log(c.a) / log(12.0))')
|
|
753
|
-
# Log10
|
|
754
|
-
x = myokit.Log10(b)
|
|
755
|
-
self.assertEqual(w.ex(x), 'log10(12.0)')
|
|
756
|
-
|
|
757
|
-
# Sin
|
|
758
|
-
x = myokit.Sin(b)
|
|
759
|
-
self.assertEqual(w.ex(x), 'sin(12.0)')
|
|
760
|
-
# Cos
|
|
761
|
-
x = myokit.Cos(b)
|
|
762
|
-
self.assertEqual(w.ex(x), 'cos(12.0)')
|
|
763
|
-
# Tan
|
|
764
|
-
x = myokit.Tan(b)
|
|
765
|
-
self.assertEqual(w.ex(x), 'tan(12.0)')
|
|
766
|
-
# ASin
|
|
767
|
-
x = myokit.ASin(b)
|
|
768
|
-
self.assertEqual(w.ex(x), 'asin(12.0)')
|
|
769
|
-
# ACos
|
|
770
|
-
x = myokit.ACos(b)
|
|
771
|
-
self.assertEqual(w.ex(x), 'acos(12.0)')
|
|
772
|
-
# ATan
|
|
773
|
-
x = myokit.ATan(b)
|
|
774
|
-
self.assertEqual(w.ex(x), 'atan(12.0)')
|
|
775
|
-
|
|
776
|
-
# Floor
|
|
777
|
-
x = myokit.Floor(b)
|
|
778
|
-
self.assertEqual(w.ex(x), 'floor(12.0)')
|
|
779
|
-
# Ceil
|
|
780
|
-
x = myokit.Ceil(b)
|
|
781
|
-
self.assertEqual(w.ex(x), 'ceil(12.0)')
|
|
782
|
-
# Abs
|
|
783
|
-
x = myokit.Abs(b)
|
|
784
|
-
self.assertEqual(w.ex(x), 'abs(12.0)')
|
|
785
|
-
|
|
786
|
-
# Equal
|
|
787
|
-
x = myokit.Equal(a, b)
|
|
788
|
-
self.assertEqual(w.ex(x), '(c.a == 12.0)')
|
|
789
|
-
# NotEqual
|
|
790
|
-
x = myokit.NotEqual(a, b)
|
|
791
|
-
self.assertEqual(w.ex(x), '(c.a != 12.0)')
|
|
792
|
-
# More
|
|
793
|
-
x = myokit.More(a, b)
|
|
794
|
-
self.assertEqual(w.ex(x), '(c.a > 12.0)')
|
|
795
|
-
# Less
|
|
796
|
-
x = myokit.Less(a, b)
|
|
797
|
-
self.assertEqual(w.ex(x), '(c.a < 12.0)')
|
|
798
|
-
# MoreEqual
|
|
799
|
-
x = myokit.MoreEqual(a, b)
|
|
800
|
-
self.assertEqual(w.ex(x), '(c.a >= 12.0)')
|
|
801
|
-
# LessEqual
|
|
802
|
-
x = myokit.LessEqual(a, b)
|
|
803
|
-
self.assertEqual(w.ex(x), '(c.a <= 12.0)')
|
|
804
|
-
|
|
805
|
-
# Not
|
|
806
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
807
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
808
|
-
x = myokit.Not(cond1)
|
|
809
|
-
self.assertEqual(w.ex(x), '!((5.0 > 3.0))')
|
|
810
|
-
# And
|
|
811
|
-
x = myokit.And(cond1, cond2)
|
|
812
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) && (2.0 < 1.0))')
|
|
813
|
-
# Or
|
|
814
|
-
x = myokit.Or(cond1, cond2)
|
|
815
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) || (2.0 < 1.0))')
|
|
816
|
-
|
|
817
|
-
# If (custom function)
|
|
818
|
-
x = myokit.If(cond1, a, b)
|
|
819
|
-
self.assertEqual(w.ex(x), 'ifthenelse((5.0 > 3.0), c.a, 12.0)')
|
|
820
|
-
# Piecewise
|
|
821
|
-
c = myokit.Number(1)
|
|
822
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
823
|
-
self.assertEqual(
|
|
824
|
-
w.ex(x),
|
|
825
|
-
'ifthenelse((5.0 > 3.0), c.a, ifthenelse((2.0 < 1.0), 12.0, 1.0))')
|
|
826
|
-
|
|
827
|
-
# Test fetching using ewriter method
|
|
828
|
-
w = myokit.formats.ewriter('matlab')
|
|
829
|
-
self.assertIsInstance(w, myokit.formats.matlab.MatlabExpressionWriter)
|
|
830
|
-
|
|
831
|
-
# Test without a Myokit expression
|
|
832
|
-
self.assertRaisesRegex(
|
|
833
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
834
|
-
|
|
835
|
-
|
|
836
|
-
class NumPyExpressionWriterTest(unittest.TestCase):
|
|
837
|
-
""" Test the NumPy ewriter class. """
|
|
838
|
-
|
|
839
|
-
def test_all(self):
|
|
840
|
-
w = myokit.formats.python.NumPyExpressionWriter()
|
|
841
|
-
|
|
842
|
-
model = myokit.Model()
|
|
843
|
-
component = model.add_component('c')
|
|
844
|
-
avar = component.add_variable('a')
|
|
845
|
-
|
|
846
|
-
# Name
|
|
847
|
-
a = myokit.Name(avar)
|
|
848
|
-
self.assertEqual(w.ex(a), 'c.a')
|
|
849
|
-
# Number with unit
|
|
850
|
-
b = myokit.Number('12', 'pF')
|
|
851
|
-
self.assertEqual(w.ex(b), '12.0')
|
|
852
|
-
|
|
853
|
-
# Prefix plus
|
|
854
|
-
x = myokit.PrefixPlus(b)
|
|
855
|
-
self.assertEqual(w.ex(x), '12.0')
|
|
856
|
-
# Prefix minus
|
|
857
|
-
x = myokit.PrefixMinus(b)
|
|
858
|
-
self.assertEqual(w.ex(x), '(-12.0)')
|
|
859
|
-
|
|
860
|
-
# Plus
|
|
861
|
-
x = myokit.Plus(a, b)
|
|
862
|
-
self.assertEqual(w.ex(x), 'c.a + 12.0')
|
|
863
|
-
# Minus
|
|
864
|
-
x = myokit.Minus(a, b)
|
|
865
|
-
self.assertEqual(w.ex(x), 'c.a - 12.0')
|
|
866
|
-
# Multiply
|
|
867
|
-
x = myokit.Multiply(a, b)
|
|
868
|
-
self.assertEqual(w.ex(x), 'c.a * 12.0')
|
|
869
|
-
# Divide
|
|
870
|
-
x = myokit.Divide(a, b)
|
|
871
|
-
self.assertEqual(w.ex(x), 'c.a / 12.0')
|
|
872
|
-
|
|
873
|
-
# Quotient
|
|
874
|
-
x = myokit.Quotient(a, b)
|
|
875
|
-
self.assertEqual(w.ex(x), 'c.a // 12.0')
|
|
876
|
-
# Remainder
|
|
877
|
-
x = myokit.Remainder(a, b)
|
|
878
|
-
self.assertEqual(w.ex(x), 'c.a % 12.0')
|
|
879
|
-
|
|
880
|
-
# Power
|
|
881
|
-
x = myokit.Power(a, b)
|
|
882
|
-
self.assertEqual(w.ex(x), 'c.a ** 12.0')
|
|
883
|
-
# Sqrt
|
|
884
|
-
x = myokit.Sqrt(b)
|
|
885
|
-
self.assertEqual(w.ex(x), 'numpy.sqrt(12.0)')
|
|
886
|
-
# Exp
|
|
887
|
-
x = myokit.Exp(a)
|
|
888
|
-
self.assertEqual(w.ex(x), 'numpy.exp(c.a)')
|
|
889
|
-
# Log(a)
|
|
890
|
-
x = myokit.Log(b)
|
|
891
|
-
self.assertEqual(w.ex(x), 'numpy.log(12.0)')
|
|
892
|
-
# Log(a, b)
|
|
893
|
-
x = myokit.Log(a, b)
|
|
894
|
-
self.assertEqual(w.ex(x), 'numpy.log(c.a, 12.0)')
|
|
895
|
-
# Log10
|
|
896
|
-
x = myokit.Log10(b)
|
|
897
|
-
self.assertEqual(w.ex(x), 'numpy.log10(12.0)')
|
|
898
|
-
|
|
899
|
-
# Sin
|
|
900
|
-
x = myokit.Sin(b)
|
|
901
|
-
self.assertEqual(w.ex(x), 'numpy.sin(12.0)')
|
|
902
|
-
# Cos
|
|
903
|
-
x = myokit.Cos(b)
|
|
904
|
-
self.assertEqual(w.ex(x), 'numpy.cos(12.0)')
|
|
905
|
-
# Tan
|
|
906
|
-
x = myokit.Tan(b)
|
|
907
|
-
self.assertEqual(w.ex(x), 'numpy.tan(12.0)')
|
|
908
|
-
# ASin
|
|
909
|
-
x = myokit.ASin(b)
|
|
910
|
-
self.assertEqual(w.ex(x), 'numpy.arcsin(12.0)')
|
|
911
|
-
# ACos
|
|
912
|
-
x = myokit.ACos(b)
|
|
913
|
-
self.assertEqual(w.ex(x), 'numpy.arccos(12.0)')
|
|
914
|
-
# ATan
|
|
915
|
-
x = myokit.ATan(b)
|
|
916
|
-
self.assertEqual(w.ex(x), 'numpy.arctan(12.0)')
|
|
917
|
-
|
|
918
|
-
# Floor
|
|
919
|
-
x = myokit.Floor(b)
|
|
920
|
-
self.assertEqual(w.ex(x), 'numpy.floor(12.0)')
|
|
921
|
-
# Ceil
|
|
922
|
-
x = myokit.Ceil(b)
|
|
923
|
-
self.assertEqual(w.ex(x), 'numpy.ceil(12.0)')
|
|
924
|
-
# Abs
|
|
925
|
-
x = myokit.Abs(b)
|
|
926
|
-
self.assertEqual(w.ex(x), 'abs(12.0)')
|
|
927
|
-
|
|
928
|
-
# Equal
|
|
929
|
-
x = myokit.Equal(a, b)
|
|
930
|
-
self.assertEqual(w.ex(x), '(c.a == 12.0)')
|
|
931
|
-
# NotEqual
|
|
932
|
-
x = myokit.NotEqual(a, b)
|
|
933
|
-
self.assertEqual(w.ex(x), '(c.a != 12.0)')
|
|
934
|
-
# More
|
|
935
|
-
x = myokit.More(a, b)
|
|
936
|
-
self.assertEqual(w.ex(x), '(c.a > 12.0)')
|
|
937
|
-
# Less
|
|
938
|
-
x = myokit.Less(a, b)
|
|
939
|
-
self.assertEqual(w.ex(x), '(c.a < 12.0)')
|
|
940
|
-
# MoreEqual
|
|
941
|
-
x = myokit.MoreEqual(a, b)
|
|
942
|
-
self.assertEqual(w.ex(x), '(c.a >= 12.0)')
|
|
943
|
-
# LessEqual
|
|
944
|
-
x = myokit.LessEqual(a, b)
|
|
945
|
-
self.assertEqual(w.ex(x), '(c.a <= 12.0)')
|
|
946
|
-
|
|
947
|
-
# Not
|
|
948
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
949
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
950
|
-
x = myokit.Not(cond1)
|
|
951
|
-
self.assertEqual(w.ex(x), 'not ((5.0 > 3.0))')
|
|
952
|
-
# And
|
|
953
|
-
x = myokit.And(cond1, cond2)
|
|
954
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) and (2.0 < 1.0))')
|
|
955
|
-
# Or
|
|
956
|
-
x = myokit.Or(cond1, cond2)
|
|
957
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) or (2.0 < 1.0))')
|
|
958
|
-
|
|
959
|
-
# If
|
|
960
|
-
x = myokit.If(cond1, a, b)
|
|
961
|
-
self.assertEqual(
|
|
962
|
-
w.ex(x), 'numpy.select([(5.0 > 3.0)], [c.a], 12.0)')
|
|
963
|
-
# Piecewise
|
|
964
|
-
c = myokit.Number(1)
|
|
965
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
966
|
-
self.assertEqual(
|
|
967
|
-
w.ex(x),
|
|
968
|
-
'numpy.select([(5.0 > 3.0), (2.0 < 1.0)], [c.a, 12.0], 1.0)')
|
|
969
|
-
|
|
970
|
-
# Test fetching using ewriter method
|
|
971
|
-
w = myokit.formats.ewriter('numpy')
|
|
972
|
-
self.assertIsInstance(w, myokit.formats.python.NumPyExpressionWriter)
|
|
973
|
-
|
|
974
|
-
# Test without a Myokit expression
|
|
975
|
-
self.assertRaisesRegex(
|
|
976
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
977
|
-
|
|
978
|
-
|
|
979
|
-
class PythonExpressionWriterTest(unittest.TestCase):
|
|
980
|
-
""" Test the Python ewriter class. """
|
|
981
|
-
|
|
982
|
-
def test_all(self):
|
|
983
|
-
w = myokit.formats.python.PythonExpressionWriter()
|
|
984
|
-
|
|
985
|
-
model = myokit.Model()
|
|
986
|
-
component = model.add_component('c')
|
|
987
|
-
avar = component.add_variable('a')
|
|
988
|
-
|
|
989
|
-
# Name
|
|
990
|
-
a = myokit.Name(avar)
|
|
991
|
-
self.assertEqual(w.ex(a), 'c.a')
|
|
992
|
-
# Derivative
|
|
993
|
-
x = myokit.Derivative(a)
|
|
994
|
-
self.assertEqual(w.ex(x), 'dot(c.a)')
|
|
995
|
-
# Partial derivative
|
|
996
|
-
x = myokit.PartialDerivative(a, a)
|
|
997
|
-
self.assertEqual(w.ex(x), 'diff(c.a, c.a)')
|
|
998
|
-
# Initial value
|
|
999
|
-
x = myokit.InitialValue(a)
|
|
1000
|
-
self.assertEqual(w.ex(x), 'init(c.a)')
|
|
1001
|
-
|
|
1002
|
-
# Number
|
|
1003
|
-
b = myokit.Number(3)
|
|
1004
|
-
self.assertEqual(w.ex(b), '3.0')
|
|
1005
|
-
# Number with unit
|
|
1006
|
-
b = myokit.Number(12, 'pF')
|
|
1007
|
-
self.assertEqual(w.ex(b), '12.0')
|
|
1008
|
-
|
|
1009
|
-
# Prefix plus
|
|
1010
|
-
x = myokit.PrefixPlus(b)
|
|
1011
|
-
self.assertEqual(w.ex(x), '12.0')
|
|
1012
|
-
# Prefix minus
|
|
1013
|
-
x = myokit.PrefixMinus(b)
|
|
1014
|
-
self.assertEqual(w.ex(x), '(-12.0)')
|
|
1015
|
-
|
|
1016
|
-
# Plus
|
|
1017
|
-
x = myokit.Plus(a, b)
|
|
1018
|
-
self.assertEqual(w.ex(x), 'c.a + 12.0')
|
|
1019
|
-
# Minus
|
|
1020
|
-
x = myokit.Minus(a, b)
|
|
1021
|
-
self.assertEqual(w.ex(x), 'c.a - 12.0')
|
|
1022
|
-
# Multiply
|
|
1023
|
-
x = myokit.Multiply(a, b)
|
|
1024
|
-
self.assertEqual(w.ex(x), 'c.a * 12.0')
|
|
1025
|
-
# Divide
|
|
1026
|
-
x = myokit.Divide(a, b)
|
|
1027
|
-
self.assertEqual(w.ex(x), 'c.a / 12.0')
|
|
1028
|
-
|
|
1029
|
-
# Quotient
|
|
1030
|
-
x = myokit.Quotient(a, b)
|
|
1031
|
-
self.assertEqual(w.ex(x), 'c.a // 12.0')
|
|
1032
|
-
# Remainder
|
|
1033
|
-
x = myokit.Remainder(a, b)
|
|
1034
|
-
self.assertEqual(w.ex(x), 'c.a % 12.0')
|
|
1035
|
-
|
|
1036
|
-
# Power
|
|
1037
|
-
x = myokit.Power(a, b)
|
|
1038
|
-
self.assertEqual(w.ex(x), 'c.a ** 12.0')
|
|
1039
|
-
# Sqrt
|
|
1040
|
-
x = myokit.Sqrt(b)
|
|
1041
|
-
self.assertEqual(w.ex(x), 'math.sqrt(12.0)')
|
|
1042
|
-
# Exp
|
|
1043
|
-
x = myokit.Exp(a)
|
|
1044
|
-
self.assertEqual(w.ex(x), 'math.exp(c.a)')
|
|
1045
|
-
# Log(a)
|
|
1046
|
-
x = myokit.Log(b)
|
|
1047
|
-
self.assertEqual(w.ex(x), 'math.log(12.0)')
|
|
1048
|
-
# Log(a, b)
|
|
1049
|
-
x = myokit.Log(a, b)
|
|
1050
|
-
self.assertEqual(w.ex(x), 'math.log(c.a, 12.0)')
|
|
1051
|
-
# Log10
|
|
1052
|
-
x = myokit.Log10(b)
|
|
1053
|
-
self.assertEqual(w.ex(x), 'math.log10(12.0)')
|
|
1054
|
-
|
|
1055
|
-
# Sin
|
|
1056
|
-
x = myokit.Sin(b)
|
|
1057
|
-
self.assertEqual(w.ex(x), 'math.sin(12.0)')
|
|
1058
|
-
# Cos
|
|
1059
|
-
x = myokit.Cos(b)
|
|
1060
|
-
self.assertEqual(w.ex(x), 'math.cos(12.0)')
|
|
1061
|
-
# Tan
|
|
1062
|
-
x = myokit.Tan(b)
|
|
1063
|
-
self.assertEqual(w.ex(x), 'math.tan(12.0)')
|
|
1064
|
-
# ASin
|
|
1065
|
-
x = myokit.ASin(b)
|
|
1066
|
-
self.assertEqual(w.ex(x), 'math.asin(12.0)')
|
|
1067
|
-
# ACos
|
|
1068
|
-
x = myokit.ACos(b)
|
|
1069
|
-
self.assertEqual(w.ex(x), 'math.acos(12.0)')
|
|
1070
|
-
# ATan
|
|
1071
|
-
x = myokit.ATan(b)
|
|
1072
|
-
self.assertEqual(w.ex(x), 'math.atan(12.0)')
|
|
1073
|
-
|
|
1074
|
-
# Floor
|
|
1075
|
-
x = myokit.Floor(b)
|
|
1076
|
-
self.assertEqual(w.ex(x), 'math.floor(12.0)')
|
|
1077
|
-
# Ceil
|
|
1078
|
-
x = myokit.Ceil(b)
|
|
1079
|
-
self.assertEqual(w.ex(x), 'math.ceil(12.0)')
|
|
1080
|
-
# Abs
|
|
1081
|
-
x = myokit.Abs(b)
|
|
1082
|
-
self.assertEqual(w.ex(x), 'abs(12.0)')
|
|
1083
|
-
|
|
1084
|
-
# Equal
|
|
1085
|
-
x = myokit.Equal(a, b)
|
|
1086
|
-
self.assertEqual(w.ex(x), '(c.a == 12.0)')
|
|
1087
|
-
# NotEqual
|
|
1088
|
-
x = myokit.NotEqual(a, b)
|
|
1089
|
-
self.assertEqual(w.ex(x), '(c.a != 12.0)')
|
|
1090
|
-
# More
|
|
1091
|
-
x = myokit.More(a, b)
|
|
1092
|
-
self.assertEqual(w.ex(x), '(c.a > 12.0)')
|
|
1093
|
-
# Less
|
|
1094
|
-
x = myokit.Less(a, b)
|
|
1095
|
-
self.assertEqual(w.ex(x), '(c.a < 12.0)')
|
|
1096
|
-
# MoreEqual
|
|
1097
|
-
x = myokit.MoreEqual(a, b)
|
|
1098
|
-
self.assertEqual(w.ex(x), '(c.a >= 12.0)')
|
|
1099
|
-
# LessEqual
|
|
1100
|
-
x = myokit.LessEqual(a, b)
|
|
1101
|
-
self.assertEqual(w.ex(x), '(c.a <= 12.0)')
|
|
1102
|
-
|
|
1103
|
-
# Not
|
|
1104
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
1105
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
1106
|
-
x = myokit.Not(cond1)
|
|
1107
|
-
self.assertEqual(w.ex(x), 'not ((5.0 > 3.0))')
|
|
1108
|
-
# And
|
|
1109
|
-
x = myokit.And(cond1, cond2)
|
|
1110
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) and (2.0 < 1.0))')
|
|
1111
|
-
# Or
|
|
1112
|
-
x = myokit.Or(cond1, cond2)
|
|
1113
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) or (2.0 < 1.0))')
|
|
1114
|
-
|
|
1115
|
-
# If
|
|
1116
|
-
x = myokit.If(cond1, a, b)
|
|
1117
|
-
self.assertEqual(w.ex(x), '(c.a if (5.0 > 3.0) else 12.0)')
|
|
1118
|
-
# Piecewise
|
|
1119
|
-
c = myokit.Number(1)
|
|
1120
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
1121
|
-
self.assertEqual(
|
|
1122
|
-
w.ex(x),
|
|
1123
|
-
'(c.a if (5.0 > 3.0) else (12.0 if (2.0 < 1.0) else 1.0))')
|
|
1124
|
-
|
|
1125
|
-
# Test fetching using ewriter method
|
|
1126
|
-
w = myokit.formats.ewriter('python')
|
|
1127
|
-
self.assertIsInstance(w, myokit.formats.python.PythonExpressionWriter)
|
|
1128
|
-
|
|
1129
|
-
# Test lhs method
|
|
1130
|
-
w.set_lhs_function(lambda x: 'sheep')
|
|
1131
|
-
self.assertEqual(w.ex(a), 'sheep')
|
|
1132
|
-
|
|
1133
|
-
# Test without a Myokit expression
|
|
1134
|
-
self.assertRaisesRegex(
|
|
1135
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
1136
|
-
|
|
1137
|
-
|
|
1138
|
-
class StanExpressionWriterTest(unittest.TestCase):
|
|
1139
|
-
""" Test the Stan ewriter class. """
|
|
1140
|
-
|
|
1141
|
-
def test_all(self):
|
|
1142
|
-
w = myokit.formats.stan.StanExpressionWriter()
|
|
1143
|
-
|
|
1144
|
-
model = myokit.Model()
|
|
1145
|
-
component = model.add_component('c')
|
|
1146
|
-
avar = component.add_variable('a')
|
|
1147
|
-
|
|
1148
|
-
# Name
|
|
1149
|
-
a = myokit.Name(avar)
|
|
1150
|
-
self.assertEqual(w.ex(a), 'c.a')
|
|
1151
|
-
# Number with unit
|
|
1152
|
-
b = myokit.Number('12', 'pF')
|
|
1153
|
-
self.assertEqual(w.ex(b), '12.0')
|
|
1154
|
-
|
|
1155
|
-
# Prefix plus
|
|
1156
|
-
x = myokit.PrefixPlus(b)
|
|
1157
|
-
self.assertEqual(w.ex(x), '12.0')
|
|
1158
|
-
# Prefix minus
|
|
1159
|
-
x = myokit.PrefixMinus(b)
|
|
1160
|
-
self.assertEqual(w.ex(x), '(-12.0)')
|
|
1161
|
-
|
|
1162
|
-
# Plus
|
|
1163
|
-
x = myokit.Plus(a, b)
|
|
1164
|
-
self.assertEqual(w.ex(x), 'c.a + 12.0')
|
|
1165
|
-
# Minus
|
|
1166
|
-
x = myokit.Minus(a, b)
|
|
1167
|
-
self.assertEqual(w.ex(x), 'c.a - 12.0')
|
|
1168
|
-
# Multiply
|
|
1169
|
-
x = myokit.Multiply(a, b)
|
|
1170
|
-
self.assertEqual(w.ex(x), 'c.a * 12.0')
|
|
1171
|
-
# Divide
|
|
1172
|
-
x = myokit.Divide(a, b)
|
|
1173
|
-
self.assertEqual(w.ex(x), 'c.a / 12.0')
|
|
1174
|
-
|
|
1175
|
-
# Quotient
|
|
1176
|
-
x = myokit.Quotient(a, b)
|
|
1177
|
-
self.assertEqual(w.ex(x), 'floor(c.a / 12.0)')
|
|
1178
|
-
# Remainder
|
|
1179
|
-
x = myokit.Remainder(a, b)
|
|
1180
|
-
self.assertEqual(w.ex(x), 'fmod(c.a, 12.0)')
|
|
1181
|
-
|
|
1182
|
-
# Power
|
|
1183
|
-
x = myokit.Power(a, b)
|
|
1184
|
-
self.assertEqual(w.ex(x), 'c.a ^ 12.0')
|
|
1185
|
-
# Sqrt
|
|
1186
|
-
x = myokit.Sqrt(b)
|
|
1187
|
-
self.assertEqual(w.ex(x), 'sqrt(12.0)')
|
|
1188
|
-
# Exp
|
|
1189
|
-
x = myokit.Exp(a)
|
|
1190
|
-
self.assertEqual(w.ex(x), 'exp(c.a)')
|
|
1191
|
-
# Log(a)
|
|
1192
|
-
x = myokit.Log(b)
|
|
1193
|
-
self.assertEqual(w.ex(x), 'log(12.0)')
|
|
1194
|
-
# Log(a, b)
|
|
1195
|
-
x = myokit.Log(a, b)
|
|
1196
|
-
self.assertEqual(w.ex(x), '(log(c.a) / log(12.0))')
|
|
1197
|
-
# Log10
|
|
1198
|
-
x = myokit.Log10(b)
|
|
1199
|
-
self.assertEqual(w.ex(x), 'log10(12.0)')
|
|
1200
|
-
|
|
1201
|
-
# Sin
|
|
1202
|
-
x = myokit.Sin(b)
|
|
1203
|
-
self.assertEqual(w.ex(x), 'sin(12.0)')
|
|
1204
|
-
# Cos
|
|
1205
|
-
x = myokit.Cos(b)
|
|
1206
|
-
self.assertEqual(w.ex(x), 'cos(12.0)')
|
|
1207
|
-
# Tan
|
|
1208
|
-
x = myokit.Tan(b)
|
|
1209
|
-
self.assertEqual(w.ex(x), 'tan(12.0)')
|
|
1210
|
-
# ASin
|
|
1211
|
-
x = myokit.ASin(b)
|
|
1212
|
-
self.assertEqual(w.ex(x), 'asin(12.0)')
|
|
1213
|
-
# ACos
|
|
1214
|
-
x = myokit.ACos(b)
|
|
1215
|
-
self.assertEqual(w.ex(x), 'acos(12.0)')
|
|
1216
|
-
# ATan
|
|
1217
|
-
x = myokit.ATan(b)
|
|
1218
|
-
self.assertEqual(w.ex(x), 'atan(12.0)')
|
|
1219
|
-
|
|
1220
|
-
# Floor
|
|
1221
|
-
x = myokit.Floor(b)
|
|
1222
|
-
self.assertEqual(w.ex(x), 'floor(12.0)')
|
|
1223
|
-
# Ceil
|
|
1224
|
-
x = myokit.Ceil(b)
|
|
1225
|
-
self.assertEqual(w.ex(x), 'ceil(12.0)')
|
|
1226
|
-
# Abs
|
|
1227
|
-
x = myokit.Abs(b)
|
|
1228
|
-
self.assertEqual(w.ex(x), 'abs(12.0)')
|
|
1229
|
-
|
|
1230
|
-
# Equal
|
|
1231
|
-
x = myokit.Equal(a, b)
|
|
1232
|
-
self.assertEqual(w.ex(x), '(c.a == 12.0)')
|
|
1233
|
-
# NotEqual
|
|
1234
|
-
x = myokit.NotEqual(a, b)
|
|
1235
|
-
self.assertEqual(w.ex(x), '(c.a != 12.0)')
|
|
1236
|
-
# More
|
|
1237
|
-
x = myokit.More(a, b)
|
|
1238
|
-
self.assertEqual(w.ex(x), '(c.a > 12.0)')
|
|
1239
|
-
# Less
|
|
1240
|
-
x = myokit.Less(a, b)
|
|
1241
|
-
self.assertEqual(w.ex(x), '(c.a < 12.0)')
|
|
1242
|
-
# MoreEqual
|
|
1243
|
-
x = myokit.MoreEqual(a, b)
|
|
1244
|
-
self.assertEqual(w.ex(x), '(c.a >= 12.0)')
|
|
1245
|
-
# LessEqual
|
|
1246
|
-
x = myokit.LessEqual(a, b)
|
|
1247
|
-
self.assertEqual(w.ex(x), '(c.a <= 12.0)')
|
|
1248
|
-
|
|
1249
|
-
# Not
|
|
1250
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
1251
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
1252
|
-
x = myokit.Not(cond1)
|
|
1253
|
-
self.assertEqual(w.ex(x), '!((5.0 > 3.0))')
|
|
1254
|
-
# And
|
|
1255
|
-
x = myokit.And(cond1, cond2)
|
|
1256
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) && (2.0 < 1.0))')
|
|
1257
|
-
# Or
|
|
1258
|
-
x = myokit.Or(cond1, cond2)
|
|
1259
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) || (2.0 < 1.0))')
|
|
1260
|
-
|
|
1261
|
-
# If
|
|
1262
|
-
x = myokit.If(cond1, a, b)
|
|
1263
|
-
self.assertEqual(w.ex(x), '((5.0 > 3.0) ? c.a : 12.0)')
|
|
1264
|
-
# Piecewise
|
|
1265
|
-
c = myokit.Number(1)
|
|
1266
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
1267
|
-
self.assertEqual(
|
|
1268
|
-
w.ex(x),
|
|
1269
|
-
'((5.0 > 3.0) ? c.a : ((2.0 < 1.0) ? 12.0 : 1.0))')
|
|
1270
|
-
|
|
1271
|
-
# Test fetching using ewriter method
|
|
1272
|
-
w = myokit.formats.ewriter('stan')
|
|
1273
|
-
self.assertIsInstance(w, myokit.formats.stan.StanExpressionWriter)
|
|
1274
|
-
|
|
1275
|
-
# Test without a Myokit expression
|
|
1276
|
-
self.assertRaisesRegex(
|
|
1277
|
-
ValueError, 'Unknown expression type', w.ex, 7)
|
|
1278
|
-
|
|
1279
|
-
|
|
1280
|
-
if __name__ == '__main__':
|
|
1281
|
-
unittest.main()
|