myokit 1.35.4__py3-none-any.whl → 1.36.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- myokit/__init__.py +5 -3
- myokit/__main__.py +9 -159
- myokit/_config.py +2 -2
- myokit/_expressions.py +6 -6
- myokit/_model_api.py +11 -7
- myokit/_myokit_version.py +1 -1
- myokit/_protocol.py +4 -0
- myokit/_sim/__init__.py +1 -0
- myokit/_sim/cvodessim.c +321 -177
- myokit/_sim/cvodessim.py +107 -43
- myokit/_sim/mcl.h +54 -0
- myokit/formats/__init__.py +63 -12
- myokit/formats/ansic/__init__.py +2 -1
- myokit/formats/ansic/_ewriter.py +159 -40
- myokit/formats/cpp/_ewriter.py +12 -1
- myokit/formats/cuda/_ewriter.py +15 -51
- myokit/formats/easyml/_ewriter.py +26 -54
- myokit/formats/heka/_patchmaster.py +15 -3
- myokit/formats/latex/_ewriter.py +103 -88
- myokit/formats/latex/_exporter.py +1 -1
- myokit/formats/mathml/_ewriter.py +2 -2
- myokit/formats/matlab/_ewriter.py +50 -28
- myokit/formats/opencl/_ewriter.py +61 -78
- myokit/formats/python/_ewriter.py +81 -50
- myokit/formats/stan/_ewriter.py +29 -37
- myokit/gui/source.py +1 -1
- myokit/lib/hh.py +3 -0
- myokit/lib/markov.py +6 -0
- myokit/tests/__init__.py +70 -0
- myokit/tests/data/decker.model +59 -59
- myokit/tests/test_formats.py +115 -7
- myokit/tests/test_formats_ansic.py +344 -0
- myokit/tests/test_formats_axon.py +17 -0
- myokit/tests/test_formats_cpp.py +97 -0
- myokit/tests/test_formats_cuda.py +226 -0
- myokit/tests/test_formats_easyml.py +169 -152
- myokit/tests/{test_formats_exporters.py → test_formats_exporters_run.py} +1 -69
- myokit/tests/test_formats_html.py +1 -3
- myokit/tests/test_formats_latex.py +211 -0
- myokit/tests/test_formats_mathml_content.py +13 -0
- myokit/tests/test_formats_mathml_presentation.py +54 -42
- myokit/tests/test_formats_matlab.py +218 -0
- myokit/tests/test_formats_opencl.py +206 -380
- myokit/tests/test_formats_python.py +557 -0
- myokit/tests/test_formats_stan.py +175 -0
- myokit/tests/test_formats_sympy.py +9 -2
- myokit/tests/test_lib_hh.py +36 -0
- myokit/tests/test_lib_plots.py +0 -16
- myokit/tests/test_model.py +21 -1
- myokit/tests/test_simulation_cvodes.py +137 -56
- myokit/tools.py +3 -2
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/LICENSE.txt +1 -1
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/METADATA +19 -8
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/RECORD +57 -52
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/WHEEL +1 -1
- myokit/tests/test_formats_expression_writers.py +0 -1281
- myokit/tests/test_formats_importers.py +0 -53
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/entry_points.txt +0 -0
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/top_level.txt +0 -0
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import unittest
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import myokit
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import myokit.formats
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import myokit.formats.opencl
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from myokit import (
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Number, PrefixPlus, PrefixMinus, Plus, Minus,
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Multiply, Divide, Quotient, Remainder, Power, Sqrt,
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Exp, Log, Log10, Sin, Cos, Tan, ASin, ACos, ATan, Floor, Ceil, Abs,
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Not, And, Or, Equal, NotEqual, More, Less, MoreEqual, LessEqual,
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If, Piecewise,
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)
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import myokit.tests
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class OpenCLExpressionWriterTest(myokit.tests.ExpressionWriterTestCase):
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"""
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Test conversion to Ansi C, as used by the Simulation.
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Numerical tests are provided by composing and evaluating a single RHS.
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"""
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_name = 'opencl'
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_target = myokit.formats.opencl.OpenCLExpressionWriter
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def test_number(self):
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self.eq(Number(1), '1.0f')
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self.eq(Number(-2), '-2.0f')
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self.eq(Number(13, 'mV'), '13.0f')
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def test_number_double(self):
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w = self._target(precision=myokit.DOUBLE_PRECISION)
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self.assertEqual(w.ex(Number(1)), '1.0')
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self.assertEqual(w.ex(Number(-2)), '-2.0')
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self.assertEqual(w.ex(Number(13, 'mV')), '13.0')
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def test_name(self):
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self.eq(self.a, 'a')
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w = self._target()
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w.set_lhs_function(lambda v: v.var().qname().upper())
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self.assertEqual(w.ex(self.a), 'COMP.A')
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def test_derivative(self):
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self.eq(myokit.Derivative(self.a), 'dot(a)')
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def test_partial_derivative(self):
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self.assertRaisesRegex(
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NotImplementedError, 'Partial',
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self.w.ex, myokit.PartialDerivative(self.a, self.b))
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self.
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self.
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self.
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self.
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self.
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self.assertEqual(
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self.assertEqual(
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self.assertEqual(wn.ex(x), '(-12.0f)')
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# Plus
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x = myokit.Plus(a, b)
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self.assertEqual(ws.ex(x), 'c.a + 12.0f')
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self.assertEqual(wd.ex(x), 'c.a + 12.0')
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self.assertEqual(wn.ex(x), 'c.a + 12.0f')
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# Minus
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x = myokit.Minus(a, b)
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self.assertEqual(ws.ex(x), 'c.a - 12.0f')
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self.assertEqual(wd.ex(x), 'c.a - 12.0')
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self.assertEqual(wn.ex(x), 'c.a - 12.0f')
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# Multiply
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x = myokit.Multiply(a, b)
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self.assertEqual(ws.ex(x), 'c.a * 12.0f')
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self.assertEqual(wd.ex(x), 'c.a * 12.0')
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self.assertEqual(wn.ex(x), 'c.a * 12.0f')
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# Divide
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x = myokit.Divide(a, b)
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self.assertEqual(ws.ex(x), 'c.a / 12.0f')
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self.assertEqual(wd.ex(x), 'c.a / 12.0')
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self.assertEqual(wn.ex(x), 'c.a / 12.0f')
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# Quotient
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x = myokit.Quotient(a, b)
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self.assertEqual(ws.ex(x), 'floor(c.a / 12.0f)')
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self.assertEqual(wd.ex(x), 'floor(c.a / 12.0)')
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self.assertEqual(wn.ex(x), 'floor(c.a / 12.0f)')
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# Remainder
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x = myokit.Remainder(a, b)
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self.assertEqual(ws.ex(x), 'c.a - 12.0f * (floor(c.a / 12.0f))')
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self.assertEqual(wd.ex(x), 'c.a - 12.0 * (floor(c.a / 12.0))')
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self.assertEqual(wn.ex(x), 'c.a - 12.0f * (floor(c.a / 12.0f))')
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def test_functions(self):
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# Single and double precision and native maths
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ws = myokit.formats.opencl.OpenCLExpressionWriter()
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wd = myokit.formats.opencl.OpenCLExpressionWriter(
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myokit.DOUBLE_PRECISION)
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wn = myokit.formats.opencl.OpenCLExpressionWriter(native_math=False)
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a = myokit.Name(myokit.Model().add_component('c').add_variable('a'))
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b = myokit.Number('12', 'pF')
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# Power
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x = myokit.Power(a, b)
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self.assertEqual(ws.ex(x), 'pow(c.a, 12.0f)')
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self.assertEqual(wd.ex(x), 'pow(c.a, 12.0)')
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self.assertEqual(wn.ex(x), 'pow(c.a, 12.0f)')
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# Square
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x = myokit.Power(a, myokit.Number(2))
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self.assertEqual(ws.ex(x), '(c.a * c.a)')
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self.assertEqual(wd.ex(x), '(c.a * c.a)')
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self.assertEqual(wn.ex(x), '(c.a * c.a)')
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# Square with brackets
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x = myokit.Power(myokit.Plus(a, b), myokit.Number(2))
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self.assertEqual(ws.ex(x), '((c.a + 12.0f) * (c.a + 12.0f))')
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self.assertEqual(wd.ex(x), '((c.a + 12.0) * (c.a + 12.0))')
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self.assertEqual(wn.ex(x), '((c.a + 12.0f) * (c.a + 12.0f))')
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# Sqrt
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x = myokit.Sqrt(b)
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self.assertEqual(ws.ex(x), 'native_sqrt(12.0f)')
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self.assertEqual(wd.ex(x), 'native_sqrt(12.0)')
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self.assertEqual(wn.ex(x), 'sqrt(12.0f)')
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# Exp
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x = myokit.Exp(a)
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self.assertEqual(ws.ex(x), 'native_exp(c.a)')
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self.assertEqual(wd.ex(x), 'native_exp(c.a)')
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self.assertEqual(wn.ex(x), 'exp(c.a)')
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# Log(a)
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x = myokit.Log(b)
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self.assertEqual(ws.ex(x), 'native_log(12.0f)')
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self.assertEqual(wd.ex(x), 'native_log(12.0)')
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self.assertEqual(wn.ex(x), 'log(12.0f)')
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# Log(a, b)
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x = myokit.Log(a, b)
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self.assertEqual(ws.ex(x), '(native_log(c.a) / native_log(12.0f))')
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self.assertEqual(wd.ex(x), '(native_log(c.a) / native_log(12.0))')
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self.assertEqual(wn.ex(x), '(log(c.a) / log(12.0f))')
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# Log10
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x = myokit.Log10(b)
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self.assertEqual(ws.ex(x), 'native_log10(12.0f)')
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self.assertEqual(wd.ex(x), 'native_log10(12.0)')
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self.assertEqual(wn.ex(x), 'log10(12.0f)')
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# Sin
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x = myokit.Sin(b)
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self.assertEqual(ws.ex(x), 'native_sin(12.0f)')
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self.assertEqual(wd.ex(x), 'native_sin(12.0)')
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self.assertEqual(wn.ex(x), 'sin(12.0f)')
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# Cos
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x = myokit.Cos(b)
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self.assertEqual(ws.ex(x), 'native_cos(12.0f)')
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self.assertEqual(wd.ex(x), 'native_cos(12.0)')
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self.assertEqual(wn.ex(x), 'cos(12.0f)')
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# Tan
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x = myokit.Tan(b)
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self.assertEqual(ws.ex(x), 'native_tan(12.0f)')
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self.assertEqual(wd.ex(x), 'native_tan(12.0)')
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self.assertEqual(wn.ex(x), 'tan(12.0f)')
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# ASin
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x = myokit.ASin(b)
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self.assertEqual(ws.ex(x), 'asin(12.0f)')
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self.assertEqual(wd.ex(x), 'asin(12.0)')
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self.assertEqual(wn.ex(x), 'asin(12.0f)')
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# ACos
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x = myokit.ACos(b)
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self.assertEqual(ws.ex(x), 'acos(12.0f)')
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self.assertEqual(wd.ex(x), 'acos(12.0)')
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self.assertEqual(wn.ex(x), 'acos(12.0f)')
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# ATan
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x = myokit.ATan(b)
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self.assertEqual(ws.ex(x), 'atan(12.0f)')
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self.assertEqual(wd.ex(x), 'atan(12.0)')
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self.assertEqual(wn.ex(x), 'atan(12.0f)')
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# Floor
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x = myokit.Floor(b)
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self.assertEqual(ws.ex(x), 'floor(12.0f)')
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self.assertEqual(wd.ex(x), 'floor(12.0)')
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self.assertEqual(wn.ex(x), 'floor(12.0f)')
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# Ceil
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x = myokit.Ceil(b)
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self.assertEqual(ws.ex(x), 'ceil(12.0f)')
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self.assertEqual(wd.ex(x), 'ceil(12.0)')
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self.assertEqual(wn.ex(x), 'ceil(12.0f)')
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# Abs
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x = myokit.Abs(b)
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self.assertEqual(ws.ex(x), 'fabs(12.0f)')
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self.assertEqual(wd.ex(x), 'fabs(12.0)')
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self.assertEqual(wn.ex(x), 'fabs(12.0f)')
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def test_conditional(self):
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# Single and double precision and native maths
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ws = myokit.formats.opencl.OpenCLExpressionWriter()
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wd = myokit.formats.opencl.OpenCLExpressionWriter(
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wn = myokit.formats.opencl.OpenCLExpressionWriter(native_math=False)
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a = myokit.Name(myokit.Model().add_component('c').add_variable('a'))
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b = myokit.Number('12', 'pF')
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cond1 = myokit.parse_expression('5 > 3')
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cond2 = myokit.parse_expression('2 < 1')
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# Equal
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x = myokit.Equal(a, b)
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self.assertEqual(ws.ex(x), '(c.a == 12.0f)')
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self.assertEqual(wd.ex(x), '(c.a == 12.0)')
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self.assertEqual(wn.ex(x), '(c.a == 12.0f)')
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x = myokit.Equal(cond1, cond2)
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self.assertEqual(ws.ex(x), '((5.0f > 3.0f) == (2.0f < 1.0f))')
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self.assertEqual(wd.ex(x), '((5.0 > 3.0) == (2.0 < 1.0))')
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self.assertEqual(wn.ex(x), '((5.0f > 3.0f) == (2.0f < 1.0f))')
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x = myokit.Equal(cond1, b)
|
|
204
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) == (12.0f != 0.0f))')
|
|
205
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) == (12.0 != 0.0))')
|
|
206
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) == (12.0f != 0.0f))')
|
|
207
|
-
x = myokit.Equal(a, cond2)
|
|
208
|
-
self.assertEqual(ws.ex(x), '((c.a != 0.0f) == (2.0f < 1.0f))')
|
|
209
|
-
self.assertEqual(wd.ex(x), '((c.a != 0.0) == (2.0 < 1.0))')
|
|
210
|
-
self.assertEqual(wn.ex(x), '((c.a != 0.0f) == (2.0f < 1.0f))')
|
|
211
|
-
|
|
212
|
-
# NotEqual
|
|
213
|
-
x = myokit.NotEqual(a, b)
|
|
214
|
-
self.assertEqual(ws.ex(x), '(c.a != 12.0f)')
|
|
215
|
-
self.assertEqual(wd.ex(x), '(c.a != 12.0)')
|
|
216
|
-
self.assertEqual(wn.ex(x), '(c.a != 12.0f)')
|
|
217
|
-
x = myokit.NotEqual(cond1, cond2)
|
|
218
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) != (2.0f < 1.0f))')
|
|
219
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) != (2.0 < 1.0))')
|
|
220
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) != (2.0f < 1.0f))')
|
|
221
|
-
x = myokit.NotEqual(cond1, b)
|
|
222
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) != (12.0f != 0.0f))')
|
|
223
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) != (12.0 != 0.0))')
|
|
224
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) != (12.0f != 0.0f))')
|
|
225
|
-
x = myokit.NotEqual(a, cond2)
|
|
226
|
-
self.assertEqual(ws.ex(x), '((c.a != 0.0f) != (2.0f < 1.0f))')
|
|
227
|
-
self.assertEqual(wd.ex(x), '((c.a != 0.0) != (2.0 < 1.0))')
|
|
228
|
-
self.assertEqual(wn.ex(x), '((c.a != 0.0f) != (2.0f < 1.0f))')
|
|
229
|
-
|
|
230
|
-
# More
|
|
231
|
-
x = myokit.More(a, b)
|
|
232
|
-
self.assertEqual(ws.ex(x), '(c.a > 12.0f)')
|
|
233
|
-
self.assertEqual(wd.ex(x), '(c.a > 12.0)')
|
|
234
|
-
self.assertEqual(wn.ex(x), '(c.a > 12.0f)')
|
|
235
|
-
x = myokit.More(cond1, cond2)
|
|
236
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) > (2.0f < 1.0f))')
|
|
237
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) > (2.0 < 1.0))')
|
|
238
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) > (2.0f < 1.0f))')
|
|
239
|
-
x = myokit.More(cond1, b)
|
|
240
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) > (12.0f != 0.0f))')
|
|
241
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) > (12.0 != 0.0))')
|
|
242
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) > (12.0f != 0.0f))')
|
|
243
|
-
x = myokit.More(a, cond2)
|
|
244
|
-
self.assertEqual(ws.ex(x), '((c.a != 0.0f) > (2.0f < 1.0f))')
|
|
245
|
-
self.assertEqual(wd.ex(x), '((c.a != 0.0) > (2.0 < 1.0))')
|
|
246
|
-
self.assertEqual(wn.ex(x), '((c.a != 0.0f) > (2.0f < 1.0f))')
|
|
247
|
-
|
|
248
|
-
# Less
|
|
249
|
-
x = myokit.Less(a, b)
|
|
250
|
-
self.assertEqual(ws.ex(x), '(c.a < 12.0f)')
|
|
251
|
-
self.assertEqual(wd.ex(x), '(c.a < 12.0)')
|
|
252
|
-
self.assertEqual(wn.ex(x), '(c.a < 12.0f)')
|
|
253
|
-
x = myokit.Less(cond1, cond2)
|
|
254
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) < (2.0f < 1.0f))')
|
|
255
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) < (2.0 < 1.0))')
|
|
256
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) < (2.0f < 1.0f))')
|
|
257
|
-
x = myokit.Less(cond1, b)
|
|
258
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) < (12.0f != 0.0f))')
|
|
259
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) < (12.0 != 0.0))')
|
|
260
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) < (12.0f != 0.0f))')
|
|
261
|
-
x = myokit.Less(a, cond2)
|
|
262
|
-
self.assertEqual(ws.ex(x), '((c.a != 0.0f) < (2.0f < 1.0f))')
|
|
263
|
-
self.assertEqual(wd.ex(x), '((c.a != 0.0) < (2.0 < 1.0))')
|
|
264
|
-
self.assertEqual(wn.ex(x), '((c.a != 0.0f) < (2.0f < 1.0f))')
|
|
265
|
-
|
|
266
|
-
# MoreEqual
|
|
267
|
-
x = myokit.MoreEqual(a, b)
|
|
268
|
-
self.assertEqual(ws.ex(x), '(c.a >= 12.0f)')
|
|
269
|
-
self.assertEqual(wd.ex(x), '(c.a >= 12.0)')
|
|
270
|
-
self.assertEqual(wn.ex(x), '(c.a >= 12.0f)')
|
|
271
|
-
x = myokit.MoreEqual(cond1, cond2)
|
|
272
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) >= (2.0f < 1.0f))')
|
|
273
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) >= (2.0 < 1.0))')
|
|
274
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) >= (2.0f < 1.0f))')
|
|
275
|
-
x = myokit.MoreEqual(cond1, b)
|
|
276
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) >= (12.0f != 0.0f))')
|
|
277
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) >= (12.0 != 0.0))')
|
|
278
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) >= (12.0f != 0.0f))')
|
|
279
|
-
x = myokit.MoreEqual(a, cond2)
|
|
280
|
-
self.assertEqual(ws.ex(x), '((c.a != 0.0f) >= (2.0f < 1.0f))')
|
|
281
|
-
self.assertEqual(wd.ex(x), '((c.a != 0.0) >= (2.0 < 1.0))')
|
|
282
|
-
self.assertEqual(wn.ex(x), '((c.a != 0.0f) >= (2.0f < 1.0f))')
|
|
283
|
-
|
|
284
|
-
# LessEqual
|
|
285
|
-
x = myokit.LessEqual(a, b)
|
|
286
|
-
self.assertEqual(ws.ex(x), '(c.a <= 12.0f)')
|
|
287
|
-
self.assertEqual(wd.ex(x), '(c.a <= 12.0)')
|
|
288
|
-
self.assertEqual(wn.ex(x), '(c.a <= 12.0f)')
|
|
289
|
-
x = myokit.LessEqual(cond1, cond2)
|
|
290
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) <= (2.0f < 1.0f))')
|
|
291
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) <= (2.0 < 1.0))')
|
|
292
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) <= (2.0f < 1.0f))')
|
|
293
|
-
x = myokit.LessEqual(cond1, b)
|
|
294
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) <= (12.0f != 0.0f))')
|
|
295
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) <= (12.0 != 0.0))')
|
|
296
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) <= (12.0f != 0.0f))')
|
|
297
|
-
x = myokit.LessEqual(a, cond2)
|
|
298
|
-
self.assertEqual(ws.ex(x), '((c.a != 0.0f) <= (2.0f < 1.0f))')
|
|
299
|
-
self.assertEqual(wd.ex(x), '((c.a != 0.0) <= (2.0 < 1.0))')
|
|
300
|
-
self.assertEqual(wn.ex(x), '((c.a != 0.0f) <= (2.0f < 1.0f))')
|
|
301
|
-
|
|
302
|
-
def test_logical(self):
|
|
303
|
-
|
|
304
|
-
# Single and double precision and native maths
|
|
305
|
-
ws = myokit.formats.opencl.OpenCLExpressionWriter()
|
|
306
|
-
wd = myokit.formats.opencl.OpenCLExpressionWriter(
|
|
307
|
-
myokit.DOUBLE_PRECISION)
|
|
308
|
-
wn = myokit.formats.opencl.OpenCLExpressionWriter(native_math=False)
|
|
309
|
-
|
|
310
|
-
a = myokit.Name(myokit.Model().add_component('c').add_variable('a'))
|
|
311
|
-
b = myokit.Number('12', 'pF')
|
|
312
|
-
cond1 = myokit.parse_expression('5 > 3')
|
|
313
|
-
cond2 = myokit.parse_expression('2 < 1')
|
|
314
|
-
condx = myokit.Number(1.2)
|
|
315
|
-
|
|
316
|
-
# Not
|
|
317
|
-
x = myokit.Not(cond1)
|
|
318
|
-
self.assertEqual(ws.ex(x), '!((5.0f > 3.0f))')
|
|
319
|
-
self.assertEqual(wd.ex(x), '!((5.0 > 3.0))')
|
|
320
|
-
self.assertEqual(wn.ex(x), '!((5.0f > 3.0f))')
|
|
321
|
-
x = myokit.Not(condx)
|
|
322
|
-
self.assertEqual(ws.ex(x), '!((1.2f != 0.0f))')
|
|
323
|
-
self.assertEqual(wd.ex(x), '!((1.2 != 0.0))')
|
|
324
|
-
self.assertEqual(wn.ex(x), '!((1.2f != 0.0f))')
|
|
325
|
-
|
|
326
|
-
# And
|
|
327
|
-
x = myokit.And(cond1, cond2)
|
|
328
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) && (2.0f < 1.0f))')
|
|
329
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) && (2.0 < 1.0))')
|
|
330
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) && (2.0f < 1.0f))')
|
|
331
|
-
x = myokit.And(condx, cond2)
|
|
332
|
-
self.assertEqual(ws.ex(x), '((1.2f != 0.0f) && (2.0f < 1.0f))')
|
|
333
|
-
self.assertEqual(wd.ex(x), '((1.2 != 0.0) && (2.0 < 1.0))')
|
|
334
|
-
self.assertEqual(wn.ex(x), '((1.2f != 0.0f) && (2.0f < 1.0f))')
|
|
335
|
-
x = myokit.And(cond1, condx)
|
|
336
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) && (1.2f != 0.0f))')
|
|
337
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) && (1.2 != 0.0))')
|
|
338
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) && (1.2f != 0.0f))')
|
|
339
|
-
|
|
340
|
-
# Or
|
|
341
|
-
x = myokit.Or(cond1, cond2)
|
|
342
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) || (2.0f < 1.0f))')
|
|
343
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) || (2.0 < 1.0))')
|
|
344
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) || (2.0f < 1.0f))')
|
|
345
|
-
x = myokit.Or(condx, cond2)
|
|
346
|
-
self.assertEqual(ws.ex(x), '((1.2f != 0.0f) || (2.0f < 1.0f))')
|
|
347
|
-
self.assertEqual(wd.ex(x), '((1.2 != 0.0) || (2.0 < 1.0))')
|
|
348
|
-
self.assertEqual(wn.ex(x), '((1.2f != 0.0f) || (2.0f < 1.0f))')
|
|
349
|
-
x = myokit.Or(cond1, condx)
|
|
350
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) || (1.2f != 0.0f))')
|
|
351
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) || (1.2 != 0.0))')
|
|
352
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) || (1.2f != 0.0f))')
|
|
353
|
-
|
|
354
|
-
# If
|
|
355
|
-
x = myokit.If(cond1, a, b)
|
|
356
|
-
self.assertEqual(ws.ex(x), '((5.0f > 3.0f) ? c.a : 12.0f)')
|
|
357
|
-
self.assertEqual(wd.ex(x), '((5.0 > 3.0) ? c.a : 12.0)')
|
|
358
|
-
self.assertEqual(wn.ex(x), '((5.0f > 3.0f) ? c.a : 12.0f)')
|
|
359
|
-
x = myokit.If(condx, a, b)
|
|
360
|
-
self.assertEqual(ws.ex(x), '((1.2f != 0.0f) ? c.a : 12.0f)')
|
|
361
|
-
self.assertEqual(wd.ex(x), '((1.2 != 0.0) ? c.a : 12.0)')
|
|
362
|
-
self.assertEqual(wn.ex(x), '((1.2f != 0.0f) ? c.a : 12.0f)')
|
|
363
|
-
|
|
364
|
-
# Piecewise
|
|
365
|
-
c = myokit.Number(1)
|
|
366
|
-
x = myokit.Piecewise(cond1, a, cond2, b, c)
|
|
367
|
-
self.assertEqual(
|
|
368
|
-
ws.ex(x),
|
|
369
|
-
'((5.0f > 3.0f) ? c.a : ((2.0f < 1.0f) ? 12.0f : 1.0f))')
|
|
370
|
-
self.assertEqual(
|
|
371
|
-
wd.ex(x),
|
|
372
|
-
'((5.0 > 3.0) ? c.a : ((2.0 < 1.0) ? 12.0 : 1.0))')
|
|
373
|
-
self.assertEqual(
|
|
374
|
-
wn.ex(x),
|
|
375
|
-
'((5.0f > 3.0f) ? c.a : ((2.0f < 1.0f) ? 12.0f : 1.0f))')
|
|
376
|
-
x = myokit.Piecewise(condx, a, condx, b, c)
|
|
377
|
-
self.assertEqual(
|
|
378
|
-
ws.ex(x),
|
|
379
|
-
'((1.2f != 0.0f) ? c.a : ((1.2f != 0.0f) ? 12.0f : 1.0f))')
|
|
57
|
+
def test_initial_value(self):
|
|
58
|
+
self.assertRaisesRegex(
|
|
59
|
+
NotImplementedError, 'Initial',
|
|
60
|
+
self.w.ex, myokit.InitialValue(self.a))
|
|
61
|
+
|
|
62
|
+
def test_prefix_plus_minus(self):
|
|
63
|
+
# Inherited from c-based
|
|
64
|
+
|
|
65
|
+
p = Number(11, 'kV')
|
|
66
|
+
self.eq(PrefixPlus(p), '+11.0f')
|
|
67
|
+
self.eq(PrefixPlus(PrefixPlus(p)), '+(+11.0f)')
|
|
68
|
+
self.eq(PrefixPlus(PrefixPlus(PrefixPlus(p))), '+(+(+11.0f))')
|
|
69
|
+
self.eq(PrefixPlus(Number('+1')), '+1.0f')
|
|
70
|
+
self.eq(PrefixMinus(p), '-11.0f')
|
|
71
|
+
self.eq(PrefixMinus(PrefixMinus(p)), '-(-11.0f)')
|
|
72
|
+
self.eq(PrefixMinus(Number(-1)), '-(-1.0f)')
|
|
73
|
+
self.eq(PrefixMinus(PrefixMinus(Number(-2))), '-(-(-2.0f))')
|
|
74
|
+
|
|
75
|
+
# Test with operators of precedence SUM, PRODUCT
|
|
76
|
+
a, b, c = self.abc
|
|
77
|
+
self.eq(PrefixPlus(Plus(a, b)), '+(a + b)')
|
|
78
|
+
self.eq(Divide(PrefixPlus(Plus(a, b)), c), '+(a + b) / c')
|
|
79
|
+
self.eq(PrefixPlus(Divide(b, a)), '+(b / a)')
|
|
80
|
+
self.eq(PrefixMinus(Minus(a, b)), '-(a - b)')
|
|
81
|
+
self.eq(Multiply(PrefixMinus(Plus(b, a)), c), '-(b + a) * c')
|
|
82
|
+
self.eq(PrefixMinus(Divide(b, a)), '-(b / a)')
|
|
83
|
+
|
|
84
|
+
def test_prefix_plus_minus_double(self):
|
|
85
|
+
|
|
86
|
+
w = self._target(precision=myokit.DOUBLE_PRECISION)
|
|
87
|
+
p = Number(3, 'mA')
|
|
88
|
+
self.assertEqual(w.ex(PrefixPlus(p)), '+3.0')
|
|
89
|
+
self.assertEqual(w.ex(PrefixPlus(PrefixPlus(p))), '+(+3.0)')
|
|
380
90
|
self.assertEqual(
|
|
381
|
-
|
|
382
|
-
|
|
91
|
+
w.ex(PrefixPlus(PrefixPlus(PrefixPlus(p)))), '+(+(+3.0))')
|
|
92
|
+
self.assertEqual(w.ex(PrefixPlus(Number('+1'))), '+1.0')
|
|
93
|
+
self.assertEqual(w.ex(PrefixMinus(p)), '-3.0')
|
|
94
|
+
self.assertEqual(w.ex(PrefixMinus(PrefixMinus(p))), '-(-3.0)')
|
|
95
|
+
self.assertEqual(w.ex(PrefixMinus(Number(-1))), '-(-1.0)')
|
|
383
96
|
self.assertEqual(
|
|
384
|
-
|
|
385
|
-
|
|
97
|
+
w.ex(PrefixMinus(PrefixMinus(Number(-2)))), '-(-(-2.0))')
|
|
98
|
+
|
|
99
|
+
def test_arithmetic(self):
|
|
100
|
+
# Inherited from c-based
|
|
101
|
+
|
|
102
|
+
a, b, c = self.abc
|
|
103
|
+
self.eq(Minus(Plus(a, b), c), 'a + b - c')
|
|
104
|
+
self.eq(Minus(a, Plus(b, c)), 'a - (b + c)')
|
|
105
|
+
self.eq(Multiply(Minus(a, b), c), '(a - b) * c')
|
|
106
|
+
self.eq(Multiply(a, Plus(b, c)), 'a * (b + c)')
|
|
107
|
+
self.eq(Minus(Multiply(a, b), c), 'a * b - c')
|
|
108
|
+
self.eq(Divide(a, Minus(b, c)), 'a / (b - c)')
|
|
109
|
+
self.eq(Plus(Divide(a, b), c), 'a / b + c')
|
|
110
|
+
self.eq(Divide(Divide(a, b), c), 'a / b / c')
|
|
111
|
+
|
|
112
|
+
def test_quotient_remainder(self):
|
|
113
|
+
# Inherited from c-based
|
|
114
|
+
|
|
115
|
+
a, b, c = self.abc
|
|
116
|
+
self.eq(Quotient(a, Divide(b, c)), 'floor(a / (b / c))')
|
|
117
|
+
self.eq(Remainder(Plus(a, c), b), '(a + c - b * floor((a + c) / b))')
|
|
118
|
+
self.eq(Divide(c, Remainder(b, a)), 'c / ((b - a * floor(b / a)))')
|
|
119
|
+
|
|
120
|
+
def test_power(self):
|
|
121
|
+
a, b, c = self.abc
|
|
122
|
+
self.eq(Power(a, b), 'pow(a, b)')
|
|
123
|
+
self.eq(Power(Power(a, b), c), 'pow(pow(a, b), c)')
|
|
124
|
+
self.eq(Power(a, Power(b, c)), 'pow(a, pow(b, c))')
|
|
125
|
+
|
|
126
|
+
self.eq(Power(Plus(a, b), c), 'pow(a + b, c)')
|
|
127
|
+
self.eq(Power(a, Minus(b, c)), 'pow(a, b - c)')
|
|
128
|
+
self.eq(Power(Multiply(a, b), c), 'pow(a * b, c)')
|
|
129
|
+
self.eq(Power(a, Divide(b, c)), 'pow(a, b / c)')
|
|
130
|
+
|
|
131
|
+
def test_log(self):
|
|
132
|
+
a, b = self.ab
|
|
133
|
+
self.eq(Log(a), 'native_log(a)')
|
|
134
|
+
self.eq(Log10(a), 'native_log10(a)')
|
|
135
|
+
self.eq(Log(a, b), '(native_log(a) / native_log(b))')
|
|
136
|
+
|
|
137
|
+
def test_log_no_native(self):
|
|
138
|
+
w = self._target(native_math=False)
|
|
139
|
+
a, b = self.ab
|
|
140
|
+
self.assertEqual(w.ex(Log(a)), 'log(comp.a)')
|
|
141
|
+
self.assertEqual(w.ex(Log10(b)), 'log10(comp.b)')
|
|
142
|
+
self.assertEqual(w.ex(Log(b, a)), '(log(comp.b) / log(comp.a))')
|
|
386
143
|
|
|
387
|
-
def
|
|
388
|
-
|
|
389
|
-
|
|
390
|
-
self.
|
|
391
|
-
|
|
392
|
-
|
|
393
|
-
|
|
394
|
-
|
|
395
|
-
self.
|
|
396
|
-
|
|
144
|
+
def test_functions(self):
|
|
145
|
+
a = self.a
|
|
146
|
+
self.eq(Sqrt(self.a), 'native_sqrt(a)')
|
|
147
|
+
self.eq(Exp(self.a), 'native_exp(a)')
|
|
148
|
+
self.eq(Sin(self.a), 'native_sin(a)')
|
|
149
|
+
self.eq(Cos(self.a), 'native_cos(a)')
|
|
150
|
+
self.eq(Tan(self.a), 'native_tan(a)')
|
|
151
|
+
self.eq(ASin(self.a), 'asin(a)')
|
|
152
|
+
self.eq(ACos(self.a), 'acos(a)')
|
|
153
|
+
self.eq(ATan(self.a), 'atan(a)')
|
|
154
|
+
self.eq(Floor(self.a), 'floor(a)')
|
|
155
|
+
self.eq(Ceil(self.a), 'ceil(a)')
|
|
156
|
+
self.eq(Abs(self.a), 'fabs(a)')
|
|
157
|
+
|
|
158
|
+
def test_functions_no_native(self):
|
|
159
|
+
w = self._target(native_math=False)
|
|
160
|
+
self.assertEqual(w.ex(Sqrt(self.a)), 'sqrt(comp.a)')
|
|
161
|
+
self.assertEqual(w.ex(Exp(self.a)), 'exp(comp.a)')
|
|
162
|
+
self.assertEqual(w.ex(Sin(self.a)), 'sin(comp.a)')
|
|
163
|
+
self.assertEqual(w.ex(Cos(self.a)), 'cos(comp.a)')
|
|
164
|
+
self.assertEqual(w.ex(Tan(self.a)), 'tan(comp.a)')
|
|
165
|
+
self.assertEqual(w.ex(ASin(self.a)), 'asin(comp.a)')
|
|
166
|
+
self.assertEqual(w.ex(ACos(self.a)), 'acos(comp.a)')
|
|
167
|
+
self.assertEqual(w.ex(ATan(self.a)), 'atan(comp.a)')
|
|
168
|
+
self.assertEqual(w.ex(Floor(self.a)), 'floor(comp.a)')
|
|
169
|
+
self.assertEqual(w.ex(Ceil(self.a)), 'ceil(comp.a)')
|
|
170
|
+
self.assertEqual(w.ex(Abs(self.a)), 'fabs(comp.a)')
|
|
171
|
+
|
|
172
|
+
def test_conditions(self):
|
|
173
|
+
# Can be greatly simplified after
|
|
174
|
+
# https://github.com/myokit/myokit/issues/1056
|
|
175
|
+
|
|
176
|
+
a, b, c, d = self.abcd
|
|
177
|
+
|
|
178
|
+
self.eq(And(a, b), '((a != 0.0f) && (b != 0.0f))')
|
|
179
|
+
self.eq(Or(d, c), '((d != 0.0f) || (c != 0.0f))')
|
|
180
|
+
self.eq(Not(And(a, b)), '(!((a != 0.0f) && (b != 0.0f)))')
|
|
181
|
+
self.eq(Not(c), '(!(c != 0.0f))')
|
|
182
|
+
|
|
183
|
+
self.eq(Equal(a, b), '(a == b)')
|
|
184
|
+
self.eq(NotEqual(a, b), '(a != b)')
|
|
185
|
+
self.eq(More(b, a), '(b > a)')
|
|
186
|
+
self.eq(Less(d, c), '(d < c)')
|
|
187
|
+
self.eq(MoreEqual(c, a), '(c >= a)')
|
|
188
|
+
self.eq(LessEqual(b, d), '(b <= d)')
|
|
189
|
+
|
|
190
|
+
self.eq(And(Equal(a, b), NotEqual(c, d)), '((a == b) && (c != d))')
|
|
191
|
+
self.eq(Or(More(d, c), Less(b, a)), '((d > c) || (b < a))')
|
|
192
|
+
self.eq(Not(Or(Number(1), Number(2))),
|
|
193
|
+
'(!((1.0f != 0.0f) || (2.0f != 0.0f)))')
|
|
194
|
+
self.eq(Not(Less(Number(1), Number(2))), '(!(1.0f < 2.0f))')
|
|
195
|
+
self.eq(Not(Plus(Number(1), Number(2))), '(!(1.0f + 2.0f != 0.0f))')
|
|
196
|
+
|
|
197
|
+
self.eq(Equal(Equal(Number(0), Number(0)), Number(0)),
|
|
198
|
+
'((0.0f == 0.0f) == (0.0f != 0.0f))')
|
|
199
|
+
|
|
200
|
+
def test_boolean_comparisons(self):
|
|
201
|
+
# Can be removed after https://github.com/myokit/myokit/issues/1056
|
|
202
|
+
|
|
203
|
+
a, b = self.ab
|
|
204
|
+
c1, c2 = More(Number(5), Number(3)), Less(Number(2), Number(1))
|
|
205
|
+
self.eq(Equal(c1, c2), '((5.0f > 3.0f) == (2.0f < 1.0f))')
|
|
206
|
+
self.eq(NotEqual(c1, a), '((5.0f > 3.0f) != (a != 0.0f))')
|
|
207
|
+
self.eq(More(b, c2), '((b != 0.0f) > (2.0f < 1.0f))')
|
|
208
|
+
self.eq(LessEqual(a, b), '(a <= b)')
|
|
209
|
+
|
|
210
|
+
def test_conditionals(self):
|
|
211
|
+
# Inherited from c-based
|
|
212
|
+
|
|
213
|
+
a, b, c, d = self.abcd
|
|
214
|
+
self.eq(If(Equal(a, b), d, c), '((a == b) ? d : c)')
|
|
215
|
+
self.eq(Piecewise(NotEqual(d, c), b, a), '((d != c) ? b : a)')
|
|
216
|
+
self.eq(Piecewise(Equal(a, b), c, Equal(a, d), Number(3), Number(4)),
|
|
217
|
+
'((a == b) ? c : ((a == d) ? 3.0f : 4.0f))')
|
|
218
|
+
|
|
219
|
+
# If condition is not a condition
|
|
220
|
+
self.eq(If(a, d, c), '((a != 0.0f) ? d : c)')
|
|
221
|
+
self.eq(Piecewise(a, b, c, d, Number(4)),
|
|
222
|
+
'((a != 0.0f) ? b : ((c != 0.0f) ? d : 4.0f))')
|
|
397
223
|
|
|
398
224
|
|
|
399
225
|
if __name__ == '__main__':
|