myokit 1.35.4__py3-none-any.whl → 1.36.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- myokit/__init__.py +5 -3
- myokit/__main__.py +9 -159
- myokit/_config.py +2 -2
- myokit/_expressions.py +6 -6
- myokit/_model_api.py +11 -7
- myokit/_myokit_version.py +1 -1
- myokit/_protocol.py +4 -0
- myokit/_sim/__init__.py +1 -0
- myokit/_sim/cvodessim.c +321 -177
- myokit/_sim/cvodessim.py +107 -43
- myokit/_sim/mcl.h +54 -0
- myokit/formats/__init__.py +63 -12
- myokit/formats/ansic/__init__.py +2 -1
- myokit/formats/ansic/_ewriter.py +159 -40
- myokit/formats/cpp/_ewriter.py +12 -1
- myokit/formats/cuda/_ewriter.py +15 -51
- myokit/formats/easyml/_ewriter.py +26 -54
- myokit/formats/heka/_patchmaster.py +15 -3
- myokit/formats/latex/_ewriter.py +103 -88
- myokit/formats/latex/_exporter.py +1 -1
- myokit/formats/mathml/_ewriter.py +2 -2
- myokit/formats/matlab/_ewriter.py +50 -28
- myokit/formats/opencl/_ewriter.py +61 -78
- myokit/formats/python/_ewriter.py +81 -50
- myokit/formats/stan/_ewriter.py +29 -37
- myokit/gui/source.py +1 -1
- myokit/lib/hh.py +3 -0
- myokit/lib/markov.py +6 -0
- myokit/tests/__init__.py +70 -0
- myokit/tests/data/decker.model +59 -59
- myokit/tests/test_formats.py +115 -7
- myokit/tests/test_formats_ansic.py +344 -0
- myokit/tests/test_formats_axon.py +17 -0
- myokit/tests/test_formats_cpp.py +97 -0
- myokit/tests/test_formats_cuda.py +226 -0
- myokit/tests/test_formats_easyml.py +169 -152
- myokit/tests/{test_formats_exporters.py → test_formats_exporters_run.py} +1 -69
- myokit/tests/test_formats_html.py +1 -3
- myokit/tests/test_formats_latex.py +211 -0
- myokit/tests/test_formats_mathml_content.py +13 -0
- myokit/tests/test_formats_mathml_presentation.py +54 -42
- myokit/tests/test_formats_matlab.py +218 -0
- myokit/tests/test_formats_opencl.py +206 -380
- myokit/tests/test_formats_python.py +557 -0
- myokit/tests/test_formats_stan.py +175 -0
- myokit/tests/test_formats_sympy.py +9 -2
- myokit/tests/test_lib_hh.py +36 -0
- myokit/tests/test_lib_plots.py +0 -16
- myokit/tests/test_model.py +21 -1
- myokit/tests/test_simulation_cvodes.py +137 -56
- myokit/tools.py +3 -2
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/LICENSE.txt +1 -1
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/METADATA +19 -8
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/RECORD +57 -52
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/WHEEL +1 -1
- myokit/tests/test_formats_expression_writers.py +0 -1281
- myokit/tests/test_formats_importers.py +0 -53
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/entry_points.txt +0 -0
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/top_level.txt +0 -0
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Metadata-Version: 2.1
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Name: myokit
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Version: 1.
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Version: 1.36.1
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Summary: A modeling and simulation tool for cardiac cellular electrophysiology
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Home-page: http://myokit.org
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Author: Michael Clerx
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[](https://codecov.io/gh/myokit/myokit)
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[](https://myokit.readthedocs.io/?badge=latest)
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[Myokit](
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[Myokit](https://myokit.org) is a tool for modeling and simulation of cardiac cellular electrophysiology.
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It's [open-source](https://github.com/myokit/myokit/blob/main/LICENSE.txt), written in Python, hosted on [GitHub](https://github.com/myokit/myokit/) and available on [PyPi](https://pypi.org/project/myokit/).
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For the latest documentation, see [myokit.readthedocs.io](https://myokit.readthedocs.io/).
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More information, including examples and an installation guide, is available on [myokit.org](
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More information, including examples and an installation guide, is available on [myokit.org](https://myokit.org).
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A list of changes introduced in each Myokit release is provided in the [Changelog](https://github.com/myokit/myokit/blob/main/CHANGELOG.md).
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## Install
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For full installation details (on linux, mac, or windows), please see [
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For full installation details (on linux, mac, or windows), please see [https://myokit.org/install](https://myokit.org/install).
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A shorter installation guide for experienced users is given below.
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To install Myokit, using PyQt5 for Myokit's GUI components, run:
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## Contributing to Myokit
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Contributing to Myokit is as easy as [asking questions](https://github.com/myokit/myokit/discussions) or posting [issues and feature requests](https://github.com/myokit/myokit/issues), and we have [pledged](./CODE_OF_CONDUCT.md) to make this an inclusive experience.
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We are always looking for people to contribute code too!
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Guidelines to help you do this are provided in [CONTRIBUTING.md](./CONTRIBUTING.md), but before diving in please [open an issue](https://github.com/myokit/myokit/issues) so that we can first discuss what needs to be done.
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A high-level plan for Myokit's future is provided in the [roadmap](./ROADMAP.md).
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### Meet the team!
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Myokit's development is driven by a [team](https://github.com/orgs/myokit/people) at the Universities of Nottingham, Oxford, and Macao, led by Michael Clerx (Nottingham).
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It is guided by an external advisory board composed of Jordi Heijman (Maastricht University), Trine Krogh-Madsen (Weill Cornell Medicine), and David Gavaghan (Oxford).
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## Citing Myokit
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If you use Myokit in your research, please cite it using the information in our [CITATION file](https://github.com/myokit/myokit/blob/main/CITATION).
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We like to [keep track of who's using Myokit](https://myokit.org/publications/) for research (based on publications) and teaching (based on peronsal correspondence).
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If you've used Myokit in teaching, we're always happy to hear about it so please get in touch via the [discussion board](https://github.com/myokit/myokit/discussions)!
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myokit/__main__.py,sha256=VXyt8m2GG62pz32H-qATT4tw988p-LlIKih0mkVYlJk,53688
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myokit/_aux.py,sha256=M9T00aqX5Q90xGxhP85uwH-C9tlY8dzDjiSjKv8l3IY,23743
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myokit/_datablock.py,sha256=UZGPVYBFZojuKY5q6Cn3U4euvZRs6qhmxNZXDnDBrxw,89061
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myokit/_datalog.py,sha256=CVOSFhFFhfU8E0Ov4r74YbwpgE0RPo8pZm84PvO6gW8,75852
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myokit/_err.py,sha256=PZJFrb3KGqW8XiT466UDtSTsW83M2J02T96Vm2CaCto,11060
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myokit/_expressions.py,sha256=
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myokit/_expressions.py,sha256=7We9a830pV7bvQziZcjwab-96p0LXg4AfawZhvvdR8U,103902
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myokit/_io.py,sha256=2ll5Yb-sbP4tvc3pPmzhNuv_PaRMPJlNRWb1TzXfELg,8948
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myokit/_model_api.py,sha256=
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myokit/_myokit_version.py,sha256=
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myokit/_model_api.py,sha256=I93WLjstvikqpkqQ5KC4PjNVlSz3nrxms_aKDgSEZ2c,194214
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myokit/_myokit_version.py,sha256=Tj0x0hW2n9taFBS4CUqW6b_QI-kKolONZiG692DKLek,726
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myokit/_parsing.py,sha256=GTVUwJvqjkQ3rc6BiwMFnzanLivbSUzW796gHCTJrNg,74065
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myokit/_progress.py,sha256=Mi2QU6Vqj4qudhXc76amXM31iID2Mo8Gljw5OH2COZ4,4410
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myokit/_protocol.py,sha256=
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myokit/_protocol.py,sha256=_N16LGHppIv4yCSPjy0q2f-Oed0yG1wMk0ipTtXnMck,30756
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myokit/_system.py,sha256=IX3Q7_7f9X9aYsxSL2CXJc9bTcFJsJbfq_e2w-OkhOI,4602
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myokit/_unit.py,sha256=wbBT2UnFuxh1_d7rqvVLiL4xeYnjJ7ZORtqJcWS6dk4,29849
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myokit/float.py,sha256=7-BqdABN5Vm4HIgRMHSgcZ4O4Vd085-5hMB6z8zJZtg,3066
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myokit/pacing.py,sha256=_My0GwIPJh4DuUiK_kYDNBcacUaOKsffjbK5LvgK6z8,4552
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myokit/pype.py,sha256=JTKuoiwxGui6iqBXK4gxNlCdtH_IGY0FiZLtmaJ580c,8230
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myokit/units.py,sha256=2xcqL8pXTr743CaffNmrC0XkPy-Kh1mlKgIKDmTUnY8,8503
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