myokit 1.35.4__py3-none-any.whl → 1.36.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- myokit/__init__.py +5 -3
- myokit/__main__.py +9 -159
- myokit/_config.py +2 -2
- myokit/_expressions.py +6 -6
- myokit/_model_api.py +11 -7
- myokit/_myokit_version.py +1 -1
- myokit/_protocol.py +4 -0
- myokit/_sim/__init__.py +1 -0
- myokit/_sim/cvodessim.c +321 -177
- myokit/_sim/cvodessim.py +107 -43
- myokit/_sim/mcl.h +54 -0
- myokit/formats/__init__.py +63 -12
- myokit/formats/ansic/__init__.py +2 -1
- myokit/formats/ansic/_ewriter.py +159 -40
- myokit/formats/cpp/_ewriter.py +12 -1
- myokit/formats/cuda/_ewriter.py +15 -51
- myokit/formats/easyml/_ewriter.py +26 -54
- myokit/formats/heka/_patchmaster.py +15 -3
- myokit/formats/latex/_ewriter.py +103 -88
- myokit/formats/latex/_exporter.py +1 -1
- myokit/formats/mathml/_ewriter.py +2 -2
- myokit/formats/matlab/_ewriter.py +50 -28
- myokit/formats/opencl/_ewriter.py +61 -78
- myokit/formats/python/_ewriter.py +81 -50
- myokit/formats/stan/_ewriter.py +29 -37
- myokit/gui/source.py +1 -1
- myokit/lib/hh.py +3 -0
- myokit/lib/markov.py +6 -0
- myokit/tests/__init__.py +70 -0
- myokit/tests/data/decker.model +59 -59
- myokit/tests/test_formats.py +115 -7
- myokit/tests/test_formats_ansic.py +344 -0
- myokit/tests/test_formats_axon.py +17 -0
- myokit/tests/test_formats_cpp.py +97 -0
- myokit/tests/test_formats_cuda.py +226 -0
- myokit/tests/test_formats_easyml.py +169 -152
- myokit/tests/{test_formats_exporters.py → test_formats_exporters_run.py} +1 -69
- myokit/tests/test_formats_html.py +1 -3
- myokit/tests/test_formats_latex.py +211 -0
- myokit/tests/test_formats_mathml_content.py +13 -0
- myokit/tests/test_formats_mathml_presentation.py +54 -42
- myokit/tests/test_formats_matlab.py +218 -0
- myokit/tests/test_formats_opencl.py +206 -380
- myokit/tests/test_formats_python.py +557 -0
- myokit/tests/test_formats_stan.py +175 -0
- myokit/tests/test_formats_sympy.py +9 -2
- myokit/tests/test_lib_hh.py +36 -0
- myokit/tests/test_lib_plots.py +0 -16
- myokit/tests/test_model.py +21 -1
- myokit/tests/test_simulation_cvodes.py +137 -56
- myokit/tools.py +3 -2
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/LICENSE.txt +1 -1
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/METADATA +19 -8
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/RECORD +57 -52
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/WHEEL +1 -1
- myokit/tests/test_formats_expression_writers.py +0 -1281
- myokit/tests/test_formats_importers.py +0 -53
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/entry_points.txt +0 -0
- {myokit-1.35.4.dist-info → myokit-1.36.1.dist-info}/top_level.txt +0 -0
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#!/usr/bin/env python3
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#
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# Tests writing of Python and NumPy equations.
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# These are used in pyfunc() and related, so numerical tests are possible and
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# desirable.
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#
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# This file is part of Myokit.
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# See http://myokit.org for copyright, sharing, and licensing details.
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#
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import math
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import unittest
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import numpy
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import myokit
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import myokit.formats.python
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from myokit import (
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Number, PrefixPlus, PrefixMinus, Plus, Minus,
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Multiply, Divide, Quotient, Remainder, Power, Sqrt,
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Exp, Log, Log10, Sin, Cos, Tan, ASin, ACos, ATan, Floor, Ceil, Abs,
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Not, And, Or, Equal, NotEqual, More, Less, MoreEqual, LessEqual,
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If, Piecewise,
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)
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import myokit.tests
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class PythonExpressionWriterTest(myokit.tests.ExpressionWriterTestCase):
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"""
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Test conversion of expressions to Python.
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This is used by pyfunc(), although that's usually done with the
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NumPyExpressionWriter instead.
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Numerical tests are provided.
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"""
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_name = 'python'
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_target = myokit.formats.python.PythonExpressionWriter
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def py(self, expression, expected):
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""" Test by converting to Python and executing. """
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function = expression.pyfunc(use_numpy=False)
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value = function()
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self.assertEqual(value, expected)
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def test_number(self):
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self.eq(Number(1), '1.0')
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self.eq(Number(-1.3274924373284374), '-1.32749243732843736e+00')
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self.eq(Number(+1.3274924373284374), '1.32749243732843736e+00')
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self.eq(Number(-2), '-2.0')
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self.eq(Number(13, 'mV'), '13.0')
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self.py(Number(14, 'mV'), 14)
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def test_name(self):
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self.eq(self.a, 'a')
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w = self._target()
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w.set_lhs_function(lambda v: v.var().qname().upper())
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self.assertEqual(w.ex(self.a), 'COMP.A')
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def test_derivative(self):
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self.eq(myokit.Derivative(self.a), 'dot(a)')
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def test_partial_derivative(self):
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e = myokit.PartialDerivative(self.a, self.b)
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self.assertRaisesRegex(NotImplementedError, 'Partial', self.w.ex, e)
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def test_initial_value(self):
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e = myokit.InitialValue(self.a)
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self.assertRaisesRegex(NotImplementedError, 'Initial', self.w.ex, e)
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def test_prefix_plus(self):
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# Test with numbers
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p = Number(11, 'kV')
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self.eq(PrefixPlus(p), '+11.0')
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self.eq(PrefixPlus(PrefixPlus(p)), '++11.0')
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self.eq(PrefixPlus(Number('+1')), '+1.0')
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self.py(PrefixPlus(Number(3)), 3)
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# Test with operators of precedence SUM, PRODUCT, POWER
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a, b, c = self.abc
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self.eq(PrefixPlus(Plus(a, b)), '+(a + b)')
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self.eq(Divide(PrefixPlus(Plus(a, b)), c), '+(a + b) / c')
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self.eq(PrefixPlus(Remainder(b, a)), '+(b % a)')
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self.eq(Power(PrefixPlus(a), b), '(+a)**b')
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self.eq(Power(PrefixPlus(Power(b, a)), c), '(+b**a)**c')
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self.eq(Power(a, PrefixPlus(Power(b, c))), 'a**(+b**c)')
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def test_prefix_minus(self):
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# Test with numbers
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p = Number(11, 'kV')
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self.eq(PrefixMinus(p), '-11.0')
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self.eq(PrefixMinus(PrefixMinus(p)), '--11.0')
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self.eq(PrefixMinus(Number(-1)), '--1.0')
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self.py(PrefixMinus(Number(3)), -3)
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# Test with operators of precedence SUM, PRODUCT, POWER
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a, b, c = self.abc
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self.eq(PrefixMinus(Minus(a, b)), '-(a - b)')
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self.eq(Multiply(PrefixMinus(Plus(b, a)), c), '-(b + a) * c')
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self.eq(PrefixMinus(Quotient(b, a)), '-(b // a)')
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self.eq(Power(PrefixMinus(a), b), '(-a)**b')
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self.eq(Power(PrefixMinus(Power(c, b)), a), '(-c**b)**a')
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self.eq(Power(a, PrefixMinus(Power(b, c))), 'a**(-b**c)')
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def test_plus_minus(self):
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a, b, c = self.abc
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self.eq(Plus(a, b), 'a + b')
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self.eq(Plus(Plus(a, b), c), 'a + b + c')
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self.eq(Plus(a, Plus(b, c)), 'a + (b + c)')
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self.eq(Minus(a, b), 'a - b')
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self.eq(Minus(Minus(a, b), c), 'a - b - c')
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self.eq(Minus(a, Minus(b, c)), 'a - (b - c)')
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self.eq(Minus(a, b), 'a - b')
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self.eq(Plus(Minus(a, b), c), 'a - b + c')
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self.eq(Minus(a, Plus(b, c)), 'a - (b + c)')
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self.eq(Minus(Plus(a, b), c), 'a + b - c')
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self.eq(Minus(a, Plus(b, c)), 'a - (b + c)')
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self.py(Plus(Number(4), Number(2)), 6)
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self.py(Minus(Number(5), Number(1.5)), 3.5)
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def test_multiply_divide(self):
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a, b, c = self.abc
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self.eq(Multiply(a, b), 'a * b')
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# Left-to-right, so (a * b) * c is the same as a * b * c...
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self.eq(Multiply(Multiply(a, b), c), 'a * b * c')
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# ...but order-of-operations-wise, a * (b * c) is different!
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self.eq(Multiply(a, Multiply(b, c)), 'a * (b * c)')
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# Note that a user typing a * b * c results in (a * b) * c
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self.eq(Divide(a, b), 'a / b')
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self.eq(Divide(Divide(a, b), c), 'a / b / c')
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self.eq(Divide(a, Divide(b, c)), 'a / (b / c)')
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self.eq(Divide(Multiply(a, b), c), 'a * b / c')
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self.eq(Multiply(Divide(a, b), c), 'a / b * c')
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self.eq(Divide(a, Multiply(b, c)), 'a / (b * c)')
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self.eq(Multiply(a, Divide(b, c)), 'a * (b / c)')
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self.eq(Multiply(Minus(a, b), c), '(a - b) * c')
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self.eq(Multiply(a, Plus(b, c)), 'a * (b + c)')
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self.eq(Minus(Multiply(a, b), c), 'a * b - c')
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self.eq(Plus(a, Multiply(b, c)), 'a + b * c')
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self.eq(Divide(Plus(a, b), c), '(a + b) / c')
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self.eq(Divide(a, Minus(b, c)), 'a / (b - c)')
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self.eq(Plus(Divide(a, b), c), 'a / b + c')
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self.eq(Minus(a, Divide(b, c)), 'a - b / c')
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self.py(Multiply(Number(7), Number(9)), 63)
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self.py(Divide(Number(5), Number(2)), 2.5)
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self.py(Multiply(Number(7), Plus(Number(1), Number(9))), 70)
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self.py(Divide(Minus(Number(19), Number(5)), Number(2)), 7)
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def test_quotient_remainder(self):
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a, b, c = self.abc
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self.eq(Remainder(Multiply(a, b), c), 'a * b % c')
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self.eq(Multiply(Quotient(a, b), c), 'a // b * c')
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self.eq(Quotient(a, Multiply(b, c)), 'a // (b * c)')
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self.eq(Multiply(a, Remainder(b, c)), 'a * (b % c)')
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self.eq(Divide(a, Quotient(b, c)), 'a / (b // c)')
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self.eq(Divide(Quotient(b, c), a), 'b // c / a')
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self.eq(Divide(a, Remainder(b, c)), 'a / (b % c)')
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self.eq(Divide(Remainder(b, c), a), 'b % c / a')
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self.py(Quotient(Number(10), Number(4)), 2) # 2*4 + 2
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self.py(Remainder(Number(10), Number(4)), 2)
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self.py(Quotient(Number(10), Number(6)), 1) # 6 + 4
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self.py(Remainder(Number(10), Number(6)), 4)
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self.py(Quotient(Number(5), Number(3)), 1) # 1*3 + 2
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self.py(Remainder(Number(5), Number(3)), 2)
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self.py(Quotient(Number(-5), Number(3)), -2) # -2*3 + 1
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self.py(Remainder(Number(-5), Number(3)), 1)
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self.py(Quotient(Number(5), Number(-3)), -2) # -2*-3 - 1
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self.py(Remainder(Number(5), Number(-3)), -1)
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self.py(Quotient(Number(-5), Number(-3)), 1) # 1*-3 - 2
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self.py(Remainder(Number(-5), Number(-3)), -2)
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# The quotient has sign sign(a)*sign(b)
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def test_power(self):
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a, b, c = self.abc
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self.eq(Power(a, b), 'a**b')
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# In Python, a**b**c = a**(b**c), whereas Myokit uses a^b^c = (a^b)^c
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self.eq(Power(Power(a, b), c), '(a**b)**c')
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self.eq(Power(a, Power(b, c)), 'a**b**c')
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self.eq(Power(Plus(a, b), c), '(a + b)**c')
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self.eq(Power(a, Minus(b, c)), 'a**(b - c)')
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self.eq(Power(Multiply(a, b), c), '(a * b)**c')
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self.eq(Power(a, Divide(b, c)), 'a**(b / c)')
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self.py(Power(Number(4), Power(Number(2), Number(3))), 65536)
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self.py(Power(Power(Number(2), Number(3)), Number(4)), 4096)
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def test_functions(self):
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a, b = self.ab
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self.eq(Sqrt(a), 'math.sqrt(a)')
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self.eq(Exp(a), 'math.exp(a)')
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self.eq(Log(a), 'math.log(a)')
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self.eq(Log(a, b), 'math.log(a, b)')
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self.eq(Log10(a), 'math.log10(a)')
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self.eq(Sin(a), 'math.sin(a)')
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self.eq(Cos(a), 'math.cos(a)')
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self.eq(Tan(a), 'math.tan(a)')
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self.eq(ASin(a), 'math.asin(a)')
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self.eq(ACos(a), 'math.acos(a)')
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self.eq(ATan(a), 'math.atan(a)')
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self.eq(Floor(a), 'math.floor(a)')
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self.eq(Ceil(a), 'math.ceil(a)')
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self.eq(Abs(a), 'abs(a)')
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self.py(Sqrt(Number(9)), 3)
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self.py(Exp(Number(3)), math.exp(3))
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self.py(Log(Number(3)), math.log(3))
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self.py(Log(Number(8), Number(2)), 3)
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self.py(Log10(Number(100)), 2)
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self.py(Sin(Number(1)), math.sin(1))
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self.py(Cos(Number(1)), math.cos(1))
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self.py(Tan(Number(4)), math.tan(4))
|
|
224
|
+
self.py(ASin(Number(0.4)), math.asin(0.4))
|
|
225
|
+
self.py(ACos(Number(0.4)), math.acos(0.4))
|
|
226
|
+
self.py(ATan(Number(0.4)), math.atan(0.4))
|
|
227
|
+
self.py(Floor(Number(3.9)), 3)
|
|
228
|
+
self.py(Ceil(Number(4.01)), 5)
|
|
229
|
+
self.py(Abs(PrefixMinus(Number(12))), 12)
|
|
230
|
+
self.py(Abs(Number(-13)), 13)
|
|
231
|
+
|
|
232
|
+
def test_conditions(self):
|
|
233
|
+
a, b, c, d = self.abcd
|
|
234
|
+
|
|
235
|
+
self.eq(And(a, b), '(a and b)')
|
|
236
|
+
self.eq(Or(d, c), '(d or c)')
|
|
237
|
+
self.eq(Not(c), '(not c)')
|
|
238
|
+
|
|
239
|
+
self.eq(Equal(a, b), '(a == b)')
|
|
240
|
+
self.eq(NotEqual(a, b), '(a != b)')
|
|
241
|
+
self.eq(More(b, a), '(b > a)')
|
|
242
|
+
self.eq(Less(d, c), '(d < c)')
|
|
243
|
+
self.eq(MoreEqual(c, a), '(c >= a)')
|
|
244
|
+
self.eq(LessEqual(b, d), '(b <= d)')
|
|
245
|
+
|
|
246
|
+
self.eq(And(Equal(a, b), NotEqual(c, d)), '((a == b) and (c != d))')
|
|
247
|
+
self.eq(Or(More(d, c), Less(b, a)), '((d > c) or (b < a))')
|
|
248
|
+
self.eq(Not(Equal(d, d)), '(not (d == d))')
|
|
249
|
+
self.eq(Not(Or(Number(1), Number(2))), '(not (1.0 or 2.0))')
|
|
250
|
+
|
|
251
|
+
true = Equal(Number(3), Number(3))
|
|
252
|
+
self.py(true, True)
|
|
253
|
+
false = NotEqual(Number(3), Number(3))
|
|
254
|
+
self.py(false, False)
|
|
255
|
+
self.py(More(Number(5), Number(3)), True)
|
|
256
|
+
self.py(More(Number(3), Number(3)), False)
|
|
257
|
+
self.py(MoreEqual(Number(3), Number(3)), True)
|
|
258
|
+
self.py(Less(Number(3), Number(5)), True)
|
|
259
|
+
self.py(More(Number(3), Number(3)), False)
|
|
260
|
+
self.py(LessEqual(Number(3), Number(3)), True)
|
|
261
|
+
|
|
262
|
+
self.py(And(true, false), False)
|
|
263
|
+
self.py(And(true, true), True)
|
|
264
|
+
self.py(Or(true, false), True)
|
|
265
|
+
self.py(Or(true, true), True)
|
|
266
|
+
self.py(Or(false, false), False)
|
|
267
|
+
self.py(Not(true), False)
|
|
268
|
+
self.py(Not(false), True)
|
|
269
|
+
|
|
270
|
+
self.eq(Equal(Equal(Number(0), Number(0)), Number(0)),
|
|
271
|
+
'((0.0 == 0.0) == 0.0)')
|
|
272
|
+
self.py(Equal(Equal(Number(0), Number(0)), Number(0)), False)
|
|
273
|
+
self.py(Equal(Equal(Number(0), Number(0)), Number(1)), True)
|
|
274
|
+
|
|
275
|
+
def test_conditionals(self):
|
|
276
|
+
|
|
277
|
+
a, b, c, d = self.abcd
|
|
278
|
+
self.eq(If(Equal(a, b), d, c), '(d if (a == b) else c)')
|
|
279
|
+
self.py(If(Equal(Number(1), Number(1)), Number(2), Number(3)), 2)
|
|
280
|
+
self.py(If(Equal(Number(10), Number(1)), Number(2), Number(3)), 3)
|
|
281
|
+
|
|
282
|
+
self.eq(Piecewise(NotEqual(d, c), b, a), '(b if (d != c) else a)')
|
|
283
|
+
self.eq(Piecewise(Equal(a, b), c, Equal(a, d), Number(3), Number(4)),
|
|
284
|
+
'(c if (a == b) else (3.0 if (a == d) else 4.0))')
|
|
285
|
+
|
|
286
|
+
self.py(Piecewise(Equal(Number(7), Number(7)), Number(2),
|
|
287
|
+
Equal(Number(7), Number(8)), Number(3),
|
|
288
|
+
Number(4)), 2)
|
|
289
|
+
self.py(Piecewise(Equal(Number(7), Number(7)), Number(2),
|
|
290
|
+
Equal(Number(7), Number(7)), Number(3),
|
|
291
|
+
Number(4)), 2)
|
|
292
|
+
self.py(Piecewise(NotEqual(Number(7), Number(7)), Number(2),
|
|
293
|
+
Equal(Number(7), Number(7)), Number(3),
|
|
294
|
+
Number(4)), 3)
|
|
295
|
+
self.py(Piecewise(NotEqual(Number(7), Number(7)), Number(2),
|
|
296
|
+
NotEqual(Number(8), Number(8)), Number(3),
|
|
297
|
+
Number(4)), 4)
|
|
298
|
+
|
|
299
|
+
|
|
300
|
+
class NumPyExpressionWriterTest(myokit.tests.ExpressionWriterTestCase):
|
|
301
|
+
"""
|
|
302
|
+
Test conversion of expressions to NumPy-compatible Python.
|
|
303
|
+
This is used e.g. to graph expressions.
|
|
304
|
+
Numerical tests are provided.
|
|
305
|
+
"""
|
|
306
|
+
_name = 'numpy'
|
|
307
|
+
_target = myokit.formats.python.NumPyExpressionWriter
|
|
308
|
+
|
|
309
|
+
def py(self, expression, expected, *arguments):
|
|
310
|
+
""" Test by executing in NumPy, possibly with vector arguments. """
|
|
311
|
+
function = expression.pyfunc(use_numpy=True)
|
|
312
|
+
if arguments:
|
|
313
|
+
arguments = [numpy.array(arg) for arg in arguments]
|
|
314
|
+
values = function(*arguments)
|
|
315
|
+
self.assertEqual(list(values), list(expected))
|
|
316
|
+
else:
|
|
317
|
+
value = function()
|
|
318
|
+
self.assertEqual(value, expected)
|
|
319
|
+
|
|
320
|
+
def test_number(self):
|
|
321
|
+
self.eq(Number(2), '2.0')
|
|
322
|
+
self.eq(Number(-1), '-1.0')
|
|
323
|
+
self.eq(Number(14, 'kV'), '14.0')
|
|
324
|
+
self.py(Number(-7, 'mA'), -7)
|
|
325
|
+
|
|
326
|
+
def test_name(self):
|
|
327
|
+
self.eq(self.b, 'b')
|
|
328
|
+
w = self._target()
|
|
329
|
+
w.set_lhs_function(lambda v: v.var().qname().upper())
|
|
330
|
+
self.assertEqual(w.ex(self.d), 'COMP.D')
|
|
331
|
+
|
|
332
|
+
def test_derivative(self):
|
|
333
|
+
self.eq(myokit.Derivative(self.d), 'dot(d)')
|
|
334
|
+
|
|
335
|
+
def test_partial_derivative(self):
|
|
336
|
+
e = myokit.InitialValue(self.a)
|
|
337
|
+
self.assertRaisesRegex(NotImplementedError, 'Initial', self.w.ex, e)
|
|
338
|
+
|
|
339
|
+
def test_initial_value(self):
|
|
340
|
+
e = myokit.PartialDerivative(self.a, self.b)
|
|
341
|
+
self.assertRaisesRegex(NotImplementedError, 'Partial', self.w.ex, e)
|
|
342
|
+
|
|
343
|
+
def test_prefix_plus(self):
|
|
344
|
+
# Test with numbers
|
|
345
|
+
p = Number(11, 'kV')
|
|
346
|
+
self.eq(PrefixPlus(p), '+11.0')
|
|
347
|
+
self.eq(PrefixPlus(PrefixPlus(p)), '++11.0')
|
|
348
|
+
self.eq(PrefixPlus(Number('+1')), '+1.0')
|
|
349
|
+
self.py(PrefixPlus(Number(3)), 3)
|
|
350
|
+
self.py(PrefixPlus(self.a), [3, 4], [3, 4])
|
|
351
|
+
|
|
352
|
+
# Test with operators of precedence SUM, PRODUCT, POWER
|
|
353
|
+
a, b, c = self.abc
|
|
354
|
+
self.eq(PrefixPlus(Plus(a, b)), '+(a + b)')
|
|
355
|
+
self.eq(Divide(PrefixPlus(Plus(a, b)), c), '+(a + b) / c')
|
|
356
|
+
self.eq(PrefixPlus(Remainder(b, a)), '+(b % a)')
|
|
357
|
+
self.eq(Power(PrefixPlus(Power(b, b)), c), '(+b**b)**c')
|
|
358
|
+
self.eq(Power(a, PrefixPlus(Power(b, c))), 'a**(+b**c)')
|
|
359
|
+
|
|
360
|
+
def test_prefix_minus(self):
|
|
361
|
+
# Test with numbers
|
|
362
|
+
p = Number(11, 'kV')
|
|
363
|
+
self.eq(PrefixMinus(p), '-11.0')
|
|
364
|
+
self.eq(PrefixMinus(PrefixMinus(p)), '--11.0')
|
|
365
|
+
self.eq(PrefixMinus(Number(-1)), '--1.0')
|
|
366
|
+
self.py(PrefixMinus(Number(3)), -3)
|
|
367
|
+
self.py(PrefixMinus(self.a), [3, -4], [-3, 4])
|
|
368
|
+
|
|
369
|
+
# Test with operators of precedence SUM, PRODUCT, POWER
|
|
370
|
+
a, b, c = self.abc
|
|
371
|
+
self.eq(PrefixMinus(Minus(a, b)), '-(a - b)')
|
|
372
|
+
self.eq(Multiply(PrefixMinus(Plus(b, a)), c), '-(b + a) * c')
|
|
373
|
+
self.eq(PrefixMinus(Quotient(b, a)), '-(b // a)')
|
|
374
|
+
self.eq(Power(PrefixMinus(Power(c, b)), a), '(-c**b)**a')
|
|
375
|
+
self.eq(Power(a, PrefixMinus(Power(b, c))), 'a**(-b**c)')
|
|
376
|
+
|
|
377
|
+
def test_plus_minus(self):
|
|
378
|
+
a, b, c = self.abc
|
|
379
|
+
self.eq(Plus(a, b), 'a + b')
|
|
380
|
+
self.eq(Plus(Plus(a, b), c), 'a + b + c')
|
|
381
|
+
self.eq(Plus(a, Plus(b, c)), 'a + (b + c)')
|
|
382
|
+
|
|
383
|
+
self.eq(Minus(a, b), 'a - b')
|
|
384
|
+
self.eq(Minus(Minus(a, b), c), 'a - b - c')
|
|
385
|
+
self.eq(Minus(a, Minus(b, c)), 'a - (b - c)')
|
|
386
|
+
|
|
387
|
+
self.eq(Minus(a, b), 'a - b')
|
|
388
|
+
self.eq(Plus(Minus(a, b), c), 'a - b + c')
|
|
389
|
+
self.eq(Minus(a, Plus(b, c)), 'a - (b + c)')
|
|
390
|
+
self.eq(Minus(Plus(a, b), c), 'a + b - c')
|
|
391
|
+
self.eq(Minus(a, Plus(b, c)), 'a - (b + c)')
|
|
392
|
+
|
|
393
|
+
self.py(Plus(Number(4), Number(2)), 6)
|
|
394
|
+
self.py(Minus(Number(5), Number(1.5)), 3.5)
|
|
395
|
+
self.py(Plus(a, Number(2)), [5, 1], [3, -1])
|
|
396
|
+
self.py(Minus(Number(5), b), [2, -5], [3, 10])
|
|
397
|
+
self.py(Plus(a, b), [6, 5, 4], [1, 2, 3], [5, 3, 1])
|
|
398
|
+
self.py(Minus(a, b), [1, 2, 3], [8, 2, 5], [7, 0, 2])
|
|
399
|
+
|
|
400
|
+
def test_multiply_divide(self):
|
|
401
|
+
a, b, c = self.abc
|
|
402
|
+
self.eq(Multiply(a, b), 'a * b')
|
|
403
|
+
# Left-to-right, so (a * b) * c is the same as a * b * c...
|
|
404
|
+
self.eq(Multiply(Multiply(a, b), c), 'a * b * c')
|
|
405
|
+
# ...but order-of-operations-wise, a * (b * c) is different!
|
|
406
|
+
self.eq(Multiply(a, Multiply(b, c)), 'a * (b * c)')
|
|
407
|
+
# Note that a user typing a * b * c results in (a * b) * c
|
|
408
|
+
|
|
409
|
+
self.eq(Divide(a, b), 'a / b')
|
|
410
|
+
self.eq(Divide(Divide(a, b), c), 'a / b / c')
|
|
411
|
+
self.eq(Divide(a, Divide(b, c)), 'a / (b / c)')
|
|
412
|
+
|
|
413
|
+
self.eq(Divide(Multiply(a, b), c), 'a * b / c')
|
|
414
|
+
self.eq(Multiply(Divide(a, b), c), 'a / b * c')
|
|
415
|
+
self.eq(Divide(a, Multiply(b, c)), 'a / (b * c)')
|
|
416
|
+
self.eq(Multiply(a, Divide(b, c)), 'a * (b / c)')
|
|
417
|
+
|
|
418
|
+
self.eq(Remainder(Multiply(a, b), c), 'a * b % c')
|
|
419
|
+
self.eq(Multiply(Quotient(a, b), c), 'a // b * c')
|
|
420
|
+
self.eq(Quotient(a, Multiply(b, c)), 'a // (b * c)')
|
|
421
|
+
self.eq(Multiply(a, Remainder(b, c)), 'a * (b % c)')
|
|
422
|
+
|
|
423
|
+
self.eq(Divide(a, Quotient(b, c)), 'a / (b // c)')
|
|
424
|
+
self.eq(Divide(Quotient(b, c), a), 'b // c / a')
|
|
425
|
+
self.eq(Divide(a, Remainder(b, c)), 'a / (b % c)')
|
|
426
|
+
self.eq(Divide(Remainder(b, c), a), 'b % c / a')
|
|
427
|
+
|
|
428
|
+
self.eq(Multiply(Minus(a, b), c), '(a - b) * c')
|
|
429
|
+
self.eq(Multiply(a, Plus(b, c)), 'a * (b + c)')
|
|
430
|
+
self.eq(Minus(Multiply(a, b), c), 'a * b - c')
|
|
431
|
+
self.eq(Plus(a, Multiply(b, c)), 'a + b * c')
|
|
432
|
+
self.eq(Divide(Plus(a, b), c), '(a + b) / c')
|
|
433
|
+
self.eq(Divide(a, Minus(b, c)), 'a / (b - c)')
|
|
434
|
+
self.eq(Plus(Divide(a, b), c), 'a / b + c')
|
|
435
|
+
self.eq(Minus(a, Divide(b, c)), 'a - b / c')
|
|
436
|
+
self.eq(Divide(a, Divide(b, c)), 'a / (b / c)')
|
|
437
|
+
self.eq(Divide(Divide(a, b), c), 'a / b / c')
|
|
438
|
+
|
|
439
|
+
self.py(Multiply(Number(7), Number(9)), 63)
|
|
440
|
+
self.py(Divide(Number(5), Number(2)), 2.5)
|
|
441
|
+
self.py(Multiply(a, Number(2)), [6, -2], [3, -1])
|
|
442
|
+
self.py(Divide(a, b), [5, -3, 10], 60, [12, -20, 6])
|
|
443
|
+
|
|
444
|
+
def test_power(self):
|
|
445
|
+
a, b, c = self.abc
|
|
446
|
+
self.eq(Power(a, b), 'a**b')
|
|
447
|
+
|
|
448
|
+
# In Python, a**b**c = a**(b**c), whereas Myokit uses a^b^c = (a^b)^c
|
|
449
|
+
self.eq(Power(Power(a, b), c), '(a**b)**c')
|
|
450
|
+
self.eq(Power(a, Power(b, c)), 'a**b**c')
|
|
451
|
+
|
|
452
|
+
self.eq(Power(Plus(a, b), c), '(a + b)**c')
|
|
453
|
+
self.eq(Power(a, Minus(b, c)), 'a**(b - c)')
|
|
454
|
+
self.eq(Power(Multiply(a, b), c), '(a * b)**c')
|
|
455
|
+
self.eq(Power(a, Divide(b, c)), 'a**(b / c)')
|
|
456
|
+
|
|
457
|
+
self.py(Power(Number(4), Power(Number(2), Number(3))), 65536)
|
|
458
|
+
self.py(Power(Power(Number(2), Number(3)), Number(4)), 4096)
|
|
459
|
+
self.py(Power(a, Power(b, c)),
|
|
460
|
+
[65536, 1, 4], [4, 1, 2], [2, 1, 4], [3, 1, 0.5])
|
|
461
|
+
self.py(Power(Power(a, b), c),
|
|
462
|
+
[4096, 0.01], [2, 10.0], [3, 2], [4, -1])
|
|
463
|
+
|
|
464
|
+
def test_functions(self):
|
|
465
|
+
a, b, c = self.abc
|
|
466
|
+
|
|
467
|
+
self.eq(Sqrt(a), 'numpy.sqrt(a)')
|
|
468
|
+
self.eq(Exp(a), 'numpy.exp(a)')
|
|
469
|
+
self.eq(Log(a), 'numpy.log(a)')
|
|
470
|
+
# Log replaced by divide always adds brackets, because parent element
|
|
471
|
+
# won't have added any (never needed around a log(a, b) function).
|
|
472
|
+
self.eq(Log(a, b), '(numpy.log(a) / numpy.log(b))')
|
|
473
|
+
self.eq(Divide(a, Log(b, c)), 'a / (numpy.log(b) / numpy.log(c))')
|
|
474
|
+
self.eq(Log10(a), 'numpy.log10(a)')
|
|
475
|
+
self.eq(Sin(a), 'numpy.sin(a)')
|
|
476
|
+
self.eq(Cos(a), 'numpy.cos(a)')
|
|
477
|
+
self.eq(Tan(a), 'numpy.tan(a)')
|
|
478
|
+
self.eq(ASin(a), 'numpy.arcsin(a)')
|
|
479
|
+
self.eq(ACos(a), 'numpy.arccos(a)')
|
|
480
|
+
self.eq(ATan(a), 'numpy.arctan(a)')
|
|
481
|
+
self.eq(Floor(a), 'numpy.floor(a)')
|
|
482
|
+
self.eq(Ceil(a), 'numpy.ceil(a)')
|
|
483
|
+
self.eq(Abs(a), 'numpy.abs(a)')
|
|
484
|
+
|
|
485
|
+
self.py(Sqrt(a), [3, 4], [9, 16])
|
|
486
|
+
self.py(Exp(a), numpy.exp([2, 3]), [2, 3])
|
|
487
|
+
self.py(Log(a), numpy.log([3, 5]), [3, 5])
|
|
488
|
+
self.py(Log(a, b), [3, 4], [27, 16], [3, 2])
|
|
489
|
+
self.py(Log10(a), [2, 3], [100, 1000])
|
|
490
|
+
self.py(Sin(a), numpy.sin([1, 2]), [1, 2])
|
|
491
|
+
self.py(Cos(a), numpy.cos([3, 4]), [3, 4])
|
|
492
|
+
self.py(Tan(a), numpy.tan([5, 6]), [5, 6])
|
|
493
|
+
self.py(ASin(a), numpy.arcsin([0.1, 0.2]), [0.1, 0.2])
|
|
494
|
+
self.py(ACos(a), numpy.arccos([0.3, 0.4, 0.5]), [0.3, 0.4, 0.5])
|
|
495
|
+
self.py(ATan(a), numpy.arctan([0.1]), [0.1])
|
|
496
|
+
self.py(Floor(a), [3, 3], [3.1, 3.9])
|
|
497
|
+
self.py(Ceil(a), [2, 3], [1.1, 3])
|
|
498
|
+
self.py(Abs(a), [13, 13], [13, -13])
|
|
499
|
+
self.py(Abs(PrefixMinus(a)), [1, 2], [1, -2])
|
|
500
|
+
|
|
501
|
+
def test_conditions(self):
|
|
502
|
+
a, b, c, d = self.abcd
|
|
503
|
+
|
|
504
|
+
self.eq(And(a, b), 'numpy.logical_and(a, b)')
|
|
505
|
+
self.eq(Or(d, c), 'numpy.logical_or(d, c)')
|
|
506
|
+
self.eq(Not(c), 'numpy.logical_not(c)')
|
|
507
|
+
|
|
508
|
+
self.eq(Equal(a, b), '(a == b)')
|
|
509
|
+
self.eq(NotEqual(a, b), '(a != b)')
|
|
510
|
+
self.eq(More(b, a), '(b > a)')
|
|
511
|
+
self.eq(Less(d, c), '(d < c)')
|
|
512
|
+
self.eq(MoreEqual(c, a), '(c >= a)')
|
|
513
|
+
self.eq(LessEqual(b, d), '(b <= d)')
|
|
514
|
+
|
|
515
|
+
self.eq(And(Equal(a, b), NotEqual(c, d)),
|
|
516
|
+
'numpy.logical_and((a == b), (c != d))')
|
|
517
|
+
self.eq(Or(More(d, c), Less(b, a)),
|
|
518
|
+
'numpy.logical_or((d > c), (b < a))')
|
|
519
|
+
self.eq(Not(Equal(d, d)), 'numpy.logical_not((d == d))')
|
|
520
|
+
self.eq(Not(Or(Number(1), Number(2))),
|
|
521
|
+
'numpy.logical_not(numpy.logical_or(1.0, 2.0))')
|
|
522
|
+
|
|
523
|
+
true = Equal(Number(3), Number(3))
|
|
524
|
+
self.py(true, True)
|
|
525
|
+
false = NotEqual(Number(3), Number(3))
|
|
526
|
+
self.py(false, False)
|
|
527
|
+
self.py(More(Number(5), Number(3)), True)
|
|
528
|
+
self.py(More(Number(3), Number(3)), False)
|
|
529
|
+
self.py(MoreEqual(Number(3), Number(3)), True)
|
|
530
|
+
self.py(Less(Number(3), Number(5)), True)
|
|
531
|
+
self.py(More(Number(3), Number(3)), False)
|
|
532
|
+
self.py(LessEqual(Number(3), Number(3)), True)
|
|
533
|
+
self.py(And(true, false), False)
|
|
534
|
+
self.py(And(true, true), True)
|
|
535
|
+
self.py(Or(a, b), [True, True, True, False],
|
|
536
|
+
[True, True, False, False], [True, False, True, False])
|
|
537
|
+
self.py(Not(a), [True, False], [False, True])
|
|
538
|
+
|
|
539
|
+
def test_conditionals(self):
|
|
540
|
+
a, b, c, d = self.abcd
|
|
541
|
+
e, f, g = self.efg
|
|
542
|
+
|
|
543
|
+
self.eq(If(Equal(a, b), d, c), 'numpy.select([(a == b)], [d], c)')
|
|
544
|
+
self.eq(Piecewise(NotEqual(d, c), b, a),
|
|
545
|
+
'numpy.select([(d != c)], [b], a)')
|
|
546
|
+
self.eq(Piecewise(Equal(a, b), c, Equal(a, d), Number(3), Number(4)),
|
|
547
|
+
'numpy.select([(a == b), (a == d)], [c, 3.0], 4.0)')
|
|
548
|
+
|
|
549
|
+
self.py(If(Equal(Number(10), Number(1)), Number(2), Number(3)), 3)
|
|
550
|
+
self.py(If(Equal(a, b), c, d), [3, 2], [2, 2], [2, 3], [3, 4], [1, 2])
|
|
551
|
+
self.py(Piecewise(Equal(a, b), c, Equal(d, e), f, g),
|
|
552
|
+
[1, 2, 30], [1, 1, 1], [1, 2, 3], [1, 1, 1], [1, 4, 5],
|
|
553
|
+
[1, 4, 6], [2, 2, 2], [3, 3, 30])
|
|
554
|
+
|
|
555
|
+
|
|
556
|
+
if __name__ == '__main__':
|
|
557
|
+
unittest.main()
|