multipers 2.4.0b1__cp312-cp312-macosx_11_0_arm64.whl

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Files changed (184) hide show
  1. multipers/.dylibs/libboost_timer.dylib +0 -0
  2. multipers/.dylibs/libc++.1.0.dylib +0 -0
  3. multipers/.dylibs/libtbb.12.17.dylib +0 -0
  4. multipers/__init__.py +33 -0
  5. multipers/_signed_measure_meta.py +426 -0
  6. multipers/_slicer_meta.py +231 -0
  7. multipers/array_api/__init__.py +62 -0
  8. multipers/array_api/numpy.py +124 -0
  9. multipers/array_api/torch.py +133 -0
  10. multipers/data/MOL2.py +458 -0
  11. multipers/data/UCR.py +18 -0
  12. multipers/data/__init__.py +1 -0
  13. multipers/data/graphs.py +466 -0
  14. multipers/data/immuno_regions.py +27 -0
  15. multipers/data/minimal_presentation_to_st_bf.py +0 -0
  16. multipers/data/pytorch2simplextree.py +91 -0
  17. multipers/data/shape3d.py +101 -0
  18. multipers/data/synthetic.py +113 -0
  19. multipers/distances.py +202 -0
  20. multipers/filtration_conversions.pxd +736 -0
  21. multipers/filtration_conversions.pxd.tp +226 -0
  22. multipers/filtrations/__init__.py +21 -0
  23. multipers/filtrations/density.py +529 -0
  24. multipers/filtrations/filtrations.py +480 -0
  25. multipers/filtrations.pxd +534 -0
  26. multipers/filtrations.pxd.tp +332 -0
  27. multipers/function_rips.cpython-312-darwin.so +0 -0
  28. multipers/function_rips.pyx +104 -0
  29. multipers/grids.cpython-312-darwin.so +0 -0
  30. multipers/grids.pyx +538 -0
  31. multipers/gudhi/Persistence_slices_interface.h +213 -0
  32. multipers/gudhi/Simplex_tree_interface.h +274 -0
  33. multipers/gudhi/Simplex_tree_multi_interface.h +648 -0
  34. multipers/gudhi/gudhi/Bitmap_cubical_complex.h +450 -0
  35. multipers/gudhi/gudhi/Bitmap_cubical_complex_base.h +1070 -0
  36. multipers/gudhi/gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h +579 -0
  37. multipers/gudhi/gudhi/Debug_utils.h +52 -0
  38. multipers/gudhi/gudhi/Degree_rips_bifiltration.h +2307 -0
  39. multipers/gudhi/gudhi/Dynamic_multi_parameter_filtration.h +2524 -0
  40. multipers/gudhi/gudhi/Fields/Multi_field.h +453 -0
  41. multipers/gudhi/gudhi/Fields/Multi_field_operators.h +460 -0
  42. multipers/gudhi/gudhi/Fields/Multi_field_shared.h +444 -0
  43. multipers/gudhi/gudhi/Fields/Multi_field_small.h +584 -0
  44. multipers/gudhi/gudhi/Fields/Multi_field_small_operators.h +490 -0
  45. multipers/gudhi/gudhi/Fields/Multi_field_small_shared.h +580 -0
  46. multipers/gudhi/gudhi/Fields/Z2_field.h +391 -0
  47. multipers/gudhi/gudhi/Fields/Z2_field_operators.h +389 -0
  48. multipers/gudhi/gudhi/Fields/Zp_field.h +493 -0
  49. multipers/gudhi/gudhi/Fields/Zp_field_operators.h +384 -0
  50. multipers/gudhi/gudhi/Fields/Zp_field_shared.h +492 -0
  51. multipers/gudhi/gudhi/Flag_complex_edge_collapser.h +337 -0
  52. multipers/gudhi/gudhi/Matrix.h +2200 -0
  53. multipers/gudhi/gudhi/Multi_filtration/Multi_parameter_generator.h +1712 -0
  54. multipers/gudhi/gudhi/Multi_filtration/multi_filtration_conversions.h +237 -0
  55. multipers/gudhi/gudhi/Multi_filtration/multi_filtration_utils.h +225 -0
  56. multipers/gudhi/gudhi/Multi_parameter_filtered_complex.h +485 -0
  57. multipers/gudhi/gudhi/Multi_parameter_filtration.h +2643 -0
  58. multipers/gudhi/gudhi/Multi_persistence/Box.h +233 -0
  59. multipers/gudhi/gudhi/Multi_persistence/Line.h +309 -0
  60. multipers/gudhi/gudhi/Multi_persistence/Multi_parameter_filtered_complex_pcoh_interface.h +268 -0
  61. multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_cohomology.h +159 -0
  62. multipers/gudhi/gudhi/Multi_persistence/Persistence_interface_matrix.h +463 -0
  63. multipers/gudhi/gudhi/Multi_persistence/Point.h +853 -0
  64. multipers/gudhi/gudhi/Off_reader.h +173 -0
  65. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix.h +834 -0
  66. multipers/gudhi/gudhi/Persistence_matrix/Base_matrix_with_column_compression.h +838 -0
  67. multipers/gudhi/gudhi/Persistence_matrix/Boundary_matrix.h +833 -0
  68. multipers/gudhi/gudhi/Persistence_matrix/Chain_matrix.h +1367 -0
  69. multipers/gudhi/gudhi/Persistence_matrix/Id_to_index_overlay.h +1157 -0
  70. multipers/gudhi/gudhi/Persistence_matrix/Position_to_index_overlay.h +869 -0
  71. multipers/gudhi/gudhi/Persistence_matrix/RU_matrix.h +905 -0
  72. multipers/gudhi/gudhi/Persistence_matrix/allocators/entry_constructors.h +122 -0
  73. multipers/gudhi/gudhi/Persistence_matrix/base_pairing.h +260 -0
  74. multipers/gudhi/gudhi/Persistence_matrix/base_swap.h +288 -0
  75. multipers/gudhi/gudhi/Persistence_matrix/chain_pairing.h +170 -0
  76. multipers/gudhi/gudhi/Persistence_matrix/chain_rep_cycles.h +247 -0
  77. multipers/gudhi/gudhi/Persistence_matrix/chain_vine_swap.h +571 -0
  78. multipers/gudhi/gudhi/Persistence_matrix/columns/chain_column_extra_properties.h +182 -0
  79. multipers/gudhi/gudhi/Persistence_matrix/columns/column_dimension_holder.h +130 -0
  80. multipers/gudhi/gudhi/Persistence_matrix/columns/column_utilities.h +235 -0
  81. multipers/gudhi/gudhi/Persistence_matrix/columns/entry_types.h +312 -0
  82. multipers/gudhi/gudhi/Persistence_matrix/columns/heap_column.h +1092 -0
  83. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_list_column.h +923 -0
  84. multipers/gudhi/gudhi/Persistence_matrix/columns/intrusive_set_column.h +914 -0
  85. multipers/gudhi/gudhi/Persistence_matrix/columns/list_column.h +930 -0
  86. multipers/gudhi/gudhi/Persistence_matrix/columns/naive_vector_column.h +1071 -0
  87. multipers/gudhi/gudhi/Persistence_matrix/columns/row_access.h +203 -0
  88. multipers/gudhi/gudhi/Persistence_matrix/columns/set_column.h +886 -0
  89. multipers/gudhi/gudhi/Persistence_matrix/columns/unordered_set_column.h +984 -0
  90. multipers/gudhi/gudhi/Persistence_matrix/columns/vector_column.h +1213 -0
  91. multipers/gudhi/gudhi/Persistence_matrix/index_mapper.h +58 -0
  92. multipers/gudhi/gudhi/Persistence_matrix/matrix_dimension_holders.h +227 -0
  93. multipers/gudhi/gudhi/Persistence_matrix/matrix_row_access.h +200 -0
  94. multipers/gudhi/gudhi/Persistence_matrix/ru_pairing.h +166 -0
  95. multipers/gudhi/gudhi/Persistence_matrix/ru_rep_cycles.h +319 -0
  96. multipers/gudhi/gudhi/Persistence_matrix/ru_vine_swap.h +562 -0
  97. multipers/gudhi/gudhi/Persistence_on_a_line.h +152 -0
  98. multipers/gudhi/gudhi/Persistence_on_rectangle.h +617 -0
  99. multipers/gudhi/gudhi/Persistent_cohomology/Field_Zp.h +118 -0
  100. multipers/gudhi/gudhi/Persistent_cohomology/Multi_field.h +173 -0
  101. multipers/gudhi/gudhi/Persistent_cohomology/Persistent_cohomology_column.h +128 -0
  102. multipers/gudhi/gudhi/Persistent_cohomology.h +769 -0
  103. multipers/gudhi/gudhi/Points_off_io.h +171 -0
  104. multipers/gudhi/gudhi/Projective_cover_kernel.h +379 -0
  105. multipers/gudhi/gudhi/Simple_object_pool.h +69 -0
  106. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_iterators.h +559 -0
  107. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_node_explicit_storage.h +83 -0
  108. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_siblings.h +121 -0
  109. multipers/gudhi/gudhi/Simplex_tree/Simplex_tree_star_simplex_iterators.h +277 -0
  110. multipers/gudhi/gudhi/Simplex_tree/filtration_value_utils.h +155 -0
  111. multipers/gudhi/gudhi/Simplex_tree/hooks_simplex_base.h +62 -0
  112. multipers/gudhi/gudhi/Simplex_tree/indexing_tag.h +27 -0
  113. multipers/gudhi/gudhi/Simplex_tree/serialization_utils.h +60 -0
  114. multipers/gudhi/gudhi/Simplex_tree/simplex_tree_options.h +105 -0
  115. multipers/gudhi/gudhi/Simplex_tree.h +3170 -0
  116. multipers/gudhi/gudhi/Slicer.h +848 -0
  117. multipers/gudhi/gudhi/Thread_safe_slicer.h +393 -0
  118. multipers/gudhi/gudhi/distance_functions.h +62 -0
  119. multipers/gudhi/gudhi/graph_simplicial_complex.h +104 -0
  120. multipers/gudhi/gudhi/multi_simplex_tree_helpers.h +147 -0
  121. multipers/gudhi/gudhi/persistence_interval.h +263 -0
  122. multipers/gudhi/gudhi/persistence_matrix_options.h +188 -0
  123. multipers/gudhi/gudhi/reader_utils.h +367 -0
  124. multipers/gudhi/gudhi/simple_mdspan.h +484 -0
  125. multipers/gudhi/gudhi/slicer_helpers.h +779 -0
  126. multipers/gudhi/tmp_h0_pers/mma_interface_h0.h +223 -0
  127. multipers/gudhi/tmp_h0_pers/naive_merge_tree.h +536 -0
  128. multipers/io.cpython-312-darwin.so +0 -0
  129. multipers/io.pyx +472 -0
  130. multipers/ml/__init__.py +0 -0
  131. multipers/ml/accuracies.py +90 -0
  132. multipers/ml/invariants_with_persistable.py +79 -0
  133. multipers/ml/kernels.py +176 -0
  134. multipers/ml/mma.py +713 -0
  135. multipers/ml/one.py +472 -0
  136. multipers/ml/point_clouds.py +352 -0
  137. multipers/ml/signed_measures.py +1667 -0
  138. multipers/ml/sliced_wasserstein.py +461 -0
  139. multipers/ml/tools.py +113 -0
  140. multipers/mma_structures.cpython-312-darwin.so +0 -0
  141. multipers/mma_structures.pxd +134 -0
  142. multipers/mma_structures.pyx +1483 -0
  143. multipers/mma_structures.pyx.tp +1126 -0
  144. multipers/multi_parameter_rank_invariant/diff_helpers.h +85 -0
  145. multipers/multi_parameter_rank_invariant/euler_characteristic.h +95 -0
  146. multipers/multi_parameter_rank_invariant/function_rips.h +317 -0
  147. multipers/multi_parameter_rank_invariant/hilbert_function.h +761 -0
  148. multipers/multi_parameter_rank_invariant/persistence_slices.h +149 -0
  149. multipers/multi_parameter_rank_invariant/rank_invariant.h +350 -0
  150. multipers/multiparameter_edge_collapse.py +41 -0
  151. multipers/multiparameter_module_approximation/approximation.h +2541 -0
  152. multipers/multiparameter_module_approximation/debug.h +107 -0
  153. multipers/multiparameter_module_approximation/format_python-cpp.h +292 -0
  154. multipers/multiparameter_module_approximation/utilities.h +428 -0
  155. multipers/multiparameter_module_approximation.cpython-312-darwin.so +0 -0
  156. multipers/multiparameter_module_approximation.pyx +286 -0
  157. multipers/ops.cpython-312-darwin.so +0 -0
  158. multipers/ops.pyx +231 -0
  159. multipers/pickle.py +89 -0
  160. multipers/plots.py +550 -0
  161. multipers/point_measure.cpython-312-darwin.so +0 -0
  162. multipers/point_measure.pyx +409 -0
  163. multipers/simplex_tree_multi.cpython-312-darwin.so +0 -0
  164. multipers/simplex_tree_multi.pxd +136 -0
  165. multipers/simplex_tree_multi.pyx +11719 -0
  166. multipers/simplex_tree_multi.pyx.tp +2102 -0
  167. multipers/slicer.cpython-312-darwin.so +0 -0
  168. multipers/slicer.pxd +2097 -0
  169. multipers/slicer.pxd.tp +263 -0
  170. multipers/slicer.pyx +13042 -0
  171. multipers/slicer.pyx.tp +1259 -0
  172. multipers/tensor/tensor.h +672 -0
  173. multipers/tensor.pxd +13 -0
  174. multipers/test.pyx +44 -0
  175. multipers/tests/__init__.py +70 -0
  176. multipers/torch/__init__.py +1 -0
  177. multipers/torch/diff_grids.py +240 -0
  178. multipers/torch/rips_density.py +310 -0
  179. multipers/vector_interface.pxd +46 -0
  180. multipers-2.4.0b1.dist-info/METADATA +131 -0
  181. multipers-2.4.0b1.dist-info/RECORD +184 -0
  182. multipers-2.4.0b1.dist-info/WHEEL +6 -0
  183. multipers-2.4.0b1.dist-info/licenses/LICENSE +21 -0
  184. multipers-2.4.0b1.dist-info/top_level.txt +1 -0
@@ -0,0 +1,761 @@
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+ #pragma once
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+
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+ #include <algorithm>
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+ #include <iostream>
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+ #include <limits>
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+ #include <oneapi/tbb/enumerable_thread_specific.h>
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+ #include <oneapi/tbb/parallel_for.h>
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+ #include <ostream>
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+ #include <utility> // std::pair
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+ #include <vector>
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+
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+ #include "../gudhi/Simplex_tree_multi_interface.h"
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+ #include "../gudhi/gudhi/Slicer.h"
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+ #include "../tensor/tensor.h"
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+ #include "persistence_slices.h"
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+
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+ namespace Gudhi {
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+ namespace multiparameter {
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+ namespace hilbert_function {
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+
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+ // TODO : this function is ugly
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+ template <typename Filtration, typename indices_type>
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+ inline typename Filtration::value_type horizontal_line_filtration2(const Filtration &x,
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+ unsigned int gen_index,
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+ indices_type height,
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+ indices_type i,
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+ indices_type j,
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+ const std::vector<indices_type> &fixed_values) {
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+ const auto &inf = Filtration::T_inf;
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+ for (indices_type k = 0u; k < static_cast<indices_type>(x.num_parameters()); k++) {
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+ if (k == i || k == j) continue; // coordinate in the plane
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+ if (x(gen_index, k) > fixed_values[k]) // simplex appears after the plane
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+ return inf;
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+ }
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+ // simplex appears in the plane, but is it in the line with height "height"
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+ if (x(gen_index, j) <= height)
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+ return x(gen_index, i);
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+ return inf;
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+ }
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+
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+ template <typename index_type>
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+ using hilbert_thread_data = tbb::enumerable_thread_specific<std::pair<Simplex_tree_std, std::vector<index_type>>>;
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+
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+ template <typename Filtration, typename dtype, typename index_type>
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+ inline void compute_2d_hilbert_surface(
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+ python_interface::Simplex_tree_multi_interface<Filtration> &st_multi,
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+ // Simplex_tree_std &_st,
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+ hilbert_thread_data<index_type> &thread_simplex_tree,
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+ const tensor::static_tensor_view<dtype, index_type> &out, // assumes its a zero tensor
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+ const std::vector<index_type> grid_shape,
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+ const std::vector<index_type> degrees,
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+ index_type i,
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+ index_type j,
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+ const std::vector<index_type> fixed_values,
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+ bool mobius_inverion,
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+ bool zero_pad,
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+ int expand_collapse_dim = 0) {
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+ using value_type = typename Filtration::value_type;
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+ // if (grid_shape.size() < 2 || st_multi.num_parameters() < 2)
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+ // throw std::invalid_argument("Grid shape has to have at least 2
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+ // element."); if (st_multi.num_parameters() - fixed_values.size()
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+ // != 2) throw std::invalid_argument("Fix more values for the
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+ // simplextree, which has a too big number of parameters");
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+ // assert(fixed_values.size() == st_multi.num_parameters());
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+
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+ constexpr const bool verbose = false;
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+ index_type I = grid_shape[i + 1], J = grid_shape[j + 1];
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+ if constexpr (verbose) std::cout << "Grid shape : " << I << " " << J << std::endl;
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+
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+ // grid2d out(I, std::vector<int>(J,0)); // zero of good size
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+ // std::vector<std::vector<index_type>> free_coordinates(grid_shape.size());
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+ // for (auto [r,k] = std::views::zip(free_coordinates,
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+ // std::ranges::iota(0,free_coordinates.size()))){ if (k==i) r =
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+ // std::ranges::iota(0,I); else if (k==j) r= std::ranges::iota(0,J);
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+ // else fixed_values[k];
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+ // }
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+ // tensor::static_tensor_view_view<value_type, index_type> dim2_view(out,
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+ // free_coordinates); auto coordinates_container =
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+
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+ // Simplex_tree_std _st;
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+ // flatten<Simplex_tree_float,
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+ // Gudhi::multi_persistence::Simplex_tree_options_multidimensional_filtration>(_st, st_multi,-1); //
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+ // copies the st_multi to a standard 1-pers simplextree
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+ // tbb::enumerable_thread_specific<std::pair<Simplex_tree_std,
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+ // std::vector<index_type>>> thread_simplex_tree;
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+ tbb::parallel_for(0, J, [&](index_type height) {
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+ // SIMPLEXTREE INIT
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+ auto &[st_std, coordinates_container] = thread_simplex_tree.local();
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+ // if (st_std.num_simplices() == 0){ st_std = _st;}
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+ // COORDINATES INIT
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+ // if (coordinates_container.size() == 0) {
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+ // //This init is fine as only the j+1th coord is touched
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+ // coordinates_container.reserve(fixed_values.size()+1);
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+ // coordinates_container.push_back(0); // degree
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+ // for (auto c : fixed_values) coordinates_container.push_back(c);
96
+ // }
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+ // coordinates_container.resize(fixed_values.size()+1); // Not necessary
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+
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+ // if (coordinates_container.size() != fixed_values.size()+1 ||
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+ // st_std.num_simplices() == 0){ throw std::runtime_error("Bad tbb thread
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+ // local storage initialization.");
102
+ // }
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+ // Coordinate initialization to fixed values
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+ // coordinates_container[0] = 0; // not necessary
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+ // for (auto [c, i] : std::views::zip(fixed_values, std::views::iota(0u,
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+ // fixed_values.size()))) // NIK APPLE CLANG coordinates_container[i+1] = c;
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+ for (auto i = 0u; i < fixed_values.size(); i++) coordinates_container[i + 1] = fixed_values[i];
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+
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+ coordinates_container[j + 1] = height;
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+
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+ // Filtration multi_filtration(st_multi.num_parameters());
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+ auto sh_standard = st_std.complex_simplex_range().begin();
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+ auto _end = st_std.complex_simplex_range().end();
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+ auto sh_multi = st_multi.complex_simplex_range().begin();
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+ for (; sh_standard != _end; ++sh_multi, ++sh_standard) {
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+ // for (auto [sh_standard, sh_multi] :
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+ // std::ranges::views::zip(st_std.complex_simplex_range(),
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+ // st_multi.complex_simplex_range())){ // too bad apple clang exists
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+ Filtration multi_filtration = st_multi.filtration(*sh_multi);
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+ typename Simplex_tree_std::Filtration_value horizontal_filtration;
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+ horizontal_filtration = std::numeric_limits<typename Simplex_tree_std::Filtration_value>::infinity();
122
+ for (unsigned int g = 0; g < multi_filtration.num_generators(); ++g) {
123
+ horizontal_filtration = std::min(horizontal_filtration,
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+ static_cast<Simplex_tree_std::Filtration_value>(horizontal_line_filtration2(
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+ multi_filtration, g, height, i, j, fixed_values)));
126
+ }
127
+ st_std.assign_filtration(*sh_standard, horizontal_filtration);
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+
129
+ if constexpr (verbose) {
130
+ std::cout << "Simplex {";
131
+ for (auto vertex : st_multi.simplex_vertex_range(*sh_multi)) std::cout << vertex << " ";
132
+ std::cout << "} / " << st_std.num_simplices() << " Filtration multi "
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+ << st_multi.filtration(*sh_multi) << " Filtration 1d " << st_std.filtration(*sh_standard) << "\n";
134
+ }
135
+ }
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+
137
+ if constexpr (verbose) {
138
+ std::cout << "Coords : " << height << " [";
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+ for (auto stuff : fixed_values) std::cout << stuff << " ";
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+ std::cout << "]" << std::endl;
141
+ }
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+ const std::vector<Barcode> barcodes = compute_dgms(st_std, degrees, expand_collapse_dim);
143
+ index_type degree_index = 0;
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+ for (const auto &barcode : barcodes) { // TODO range view cartesian product
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+ coordinates_container[0] = degree_index;
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+ for (const auto &bar : barcode) {
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+ auto birth = bar.first; // float
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+ auto death = bar.second;
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+ // if constexpr (verbose) std::cout << "BEFORE " << birth << " " <<
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+ // death << " " << I << " \n"; death = death > I ? I : death; // TODO
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+ // FIXME if constexpr (verbose) std::cout <<"AFTER" << birth << " " <<
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+ // death << " " << I << " \n";
153
+ if (birth > I) // some birth can be infinite
154
+ continue;
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+
156
+ if (!mobius_inverion) {
157
+ // throw std::logic_error("Not implemented");
158
+ // death = death > I ? I : death;
159
+ // for (int index = static_cast<int>(birth); index <
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+ // static_cast<int>(death); index ++){
161
+ // out[degree_index][index][height]++;
162
+ // }
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+
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+ // Seems to bug on linux ????
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+
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+ coordinates_container[i + 1] = static_cast<index_type>(birth);
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+ index_type shift_value = out.get_cum_resolution()[i + 1];
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+ index_type border = I;
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+ // index_type border = out.get_resolution()[i+1];
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+ dtype *ptr = &out[coordinates_container];
171
+ auto stop_value = death > static_cast<value_type>(border) ? border : static_cast<index_type>(death);
172
+ // Warning : for some reason linux static casts float inf to -min_int
173
+ // so min doesn't work.
174
+ if constexpr (verbose) {
175
+ std::cout << "Adding : (";
176
+ for (auto stuff : coordinates_container) std::cout << stuff << ", ";
177
+ std::cout << ") With death " << death << " casted at " << static_cast<index_type>(death)
178
+ << "with threshold at" << stop_value << " with " << border << std::endl;
179
+ }
180
+ for (index_type b = birth; b < stop_value; b++) {
181
+ (*ptr)++; // adds one to the vector
182
+ ptr += shift_value; // shift the pointer to the next element in the
183
+ // segment [birth, death]
184
+ }
185
+ } else {
186
+ // out[degree_index][static_cast<int>(birth)][height]++; // No need to
187
+ // do mobius inversion on this axis, it can be done here if (death <
188
+ // I) out[degree_index][static_cast<int>(death)][height]--;
189
+ // else if (zero_pad)
190
+ // {
191
+ // out[degree_index].back()[height]--;
192
+ // }
193
+ // coordinates_container[0] = degree_index;
194
+ coordinates_container[i + 1] = static_cast<index_type>(birth);
195
+ out[coordinates_container]++;
196
+
197
+ if constexpr (verbose) {
198
+ std::cout << "Coordinate : ";
199
+ for (auto c : coordinates_container) std::cout << c << ", ";
200
+ std::cout << std::endl;
201
+ std::cout << "axis, death, resolution : " << i + 1 << ", " << std::to_string(death) << ", "
202
+ << out.get_resolution()[i + 1];
203
+ std::cout << std::endl;
204
+ }
205
+
206
+ if (death < I) {
207
+ coordinates_container[i + 1] = static_cast<index_type>(death);
208
+ out[coordinates_container]--;
209
+ } else if (zero_pad) {
210
+ coordinates_container[i + 1] = I - 1;
211
+ out[coordinates_container]--;
212
+ }
213
+ }
214
+ // else
215
+ // out[I-1][height]--;
216
+ }
217
+ degree_index++;
218
+ }
219
+ });
220
+ return;
221
+ }
222
+
223
+ template <typename Filtration, typename dtype, typename index_type>
224
+ void _rec_get_hilbert_surface(python_interface::Simplex_tree_multi_interface<Filtration> &st_multi,
225
+ // Simplex_tree_std &_st,
226
+ hilbert_thread_data<index_type> &thread_simplex_tree,
227
+ const tensor::static_tensor_view<dtype, index_type> &out, // assumes its a zero tensor
228
+ const std::vector<index_type> grid_shape,
229
+ const std::vector<index_type> degrees,
230
+ std::vector<index_type> coordinates_to_compute,
231
+ const std::vector<index_type> fixed_values,
232
+ bool mobius_inverion = true,
233
+ bool zero_pad = false,
234
+ int expand_collapse_dim = 0) {
235
+ constexpr const bool verbose = false;
236
+
237
+ if constexpr (verbose) {
238
+ std::cout << "Computing coordinates (";
239
+ for (auto c : coordinates_to_compute) std::cout << c << ", ";
240
+ std::cout << "). with fixed values (";
241
+ for (auto c : fixed_values) {
242
+ std::cout << c << ", ";
243
+ }
244
+ std::cout << ")." << std::endl;
245
+ }
246
+ if (coordinates_to_compute.size() == 2) {
247
+ compute_2d_hilbert_surface(st_multi,
248
+ // _st,
249
+ thread_simplex_tree,
250
+ out, // assumes its a zero tensor
251
+ grid_shape,
252
+ degrees,
253
+ coordinates_to_compute[0],
254
+ coordinates_to_compute[1],
255
+ fixed_values,
256
+ mobius_inverion,
257
+ zero_pad,
258
+ expand_collapse_dim);
259
+ return;
260
+ }
261
+
262
+ // coordinate to iterate.size --
263
+ auto coordinate_to_iterate = coordinates_to_compute.back();
264
+ coordinates_to_compute.pop_back();
265
+ tbb::parallel_for(0, grid_shape[coordinate_to_iterate + 1], [&](index_type z) {
266
+ // Updates fixes values that defines the slice
267
+ std::vector<index_type> _fixed_values = fixed_values; // TODO : do not copy this //thread local
268
+ _fixed_values[coordinate_to_iterate] = z;
269
+ _rec_get_hilbert_surface(st_multi,
270
+ thread_simplex_tree,
271
+ out,
272
+ grid_shape,
273
+ degrees,
274
+ coordinates_to_compute,
275
+ _fixed_values,
276
+ mobius_inverion,
277
+ zero_pad,
278
+ expand_collapse_dim);
279
+ });
280
+ // rmq : with mobius_inversion + rec, the coordinates to compute size is 2 =>
281
+ // first coord is always the initial 1st coord.
282
+ // => inversion is only needed for coords > 2
283
+ }
284
+
285
+ template <typename Filtration, typename dtype, typename index_type>
286
+ void get_hilbert_surface(python_interface::Simplex_tree_multi_interface<Filtration> &st_multi,
287
+ const tensor::static_tensor_view<dtype, index_type> &out, // assumes its a zero tensor
288
+ const std::vector<index_type> &grid_shape,
289
+ const std::vector<index_type> &degrees,
290
+ std::vector<index_type> coordinates_to_compute,
291
+ const std::vector<index_type> &fixed_values,
292
+ bool mobius_inverion = true,
293
+ bool zero_pad = false,
294
+ bool expand_collapse = false) {
295
+ if (degrees.size() == 0) return;
296
+ // wrapper arount the rec version, that initialize the thread variables.
297
+ if (coordinates_to_compute.size() < 2)
298
+ throw std::logic_error("Not implemented for " + std::to_string(coordinates_to_compute.size()) + "<2 parameters.");
299
+
300
+ // copies the st_multi to a standard 1-pers simplextree without the filtration values
301
+ Simplex_tree_std _st(st_multi, []([[maybe_unused]] const Filtration &f) -> Simplex_tree_std::Filtration_value { return 0.; });
302
+ std::vector<index_type> coordinates_container(st_multi.num_parameters() + 1); // +1 for degree
303
+ // coordinates_container.reserve(fixed_values.size()+1);
304
+ // coordinates_container.push_back(0); // degree
305
+ // for (auto c : fixed_values) coordinates_container.push_back(c);
306
+ std::pair<Simplex_tree_std, std::vector<index_type>> thread_data_initialization = {_st, coordinates_container};
307
+ const int max_dim = expand_collapse ? *std::max_element(degrees.begin(), degrees.end()) + 1 : 0;
308
+ tbb::enumerable_thread_specific<std::pair<Simplex_tree_std, std::vector<index_type>>> thread_simplex_tree(
309
+ thread_data_initialization); // this has a fixed size, so init should
310
+ // be benefic
311
+ _rec_get_hilbert_surface(st_multi,
312
+ thread_simplex_tree,
313
+ out,
314
+ grid_shape,
315
+ degrees,
316
+ coordinates_to_compute,
317
+ fixed_values,
318
+ mobius_inverion,
319
+ zero_pad,
320
+ max_dim);
321
+ }
322
+
323
+ template <typename Filtration, typename dtype = int, typename indices_type>
324
+ std::pair<std::vector<std::vector<indices_type>>, std::vector<dtype>> get_hilbert_signed_measure(
325
+ python_interface::Simplex_tree_multi_interface<Filtration> &st_multi,
326
+ dtype *data_ptr,
327
+ std::vector<indices_type> grid_shape,
328
+ const std::vector<indices_type> degrees,
329
+ bool zero_pad = false,
330
+ indices_type n_jobs = 0,
331
+ const bool verbose = false,
332
+ const bool expand_collapse = false) {
333
+ if (degrees.size() == 0) return {{}, {}};
334
+ // const bool verbose = false;
335
+ // auto &st_multi =
336
+ // get_simplextree_from_pointer<python_interface::interface_multi<Filtration>>(simplextree_ptr);
337
+ tensor::static_tensor_view<dtype, indices_type> container(data_ptr, grid_shape); // assumes its a zero tensor
338
+ std::vector<indices_type> coordinates_to_compute(st_multi.num_parameters());
339
+ for (auto i = 0u; i < coordinates_to_compute.size(); i++) coordinates_to_compute[i] = i;
340
+ // for (auto [c,i] : std::views::zip(coordinates_to_compute,
341
+ // std::views::iota(0,st_multi.num_parameters()))) c=i; // NIK apple
342
+ // clang
343
+ std::vector<indices_type> fixed_values(st_multi.num_parameters());
344
+
345
+ if (verbose) {
346
+ std::cout << "Container shape : ";
347
+ for (auto r : container.get_resolution()) std::cout << r << ", ";
348
+ std::cout << "\nContainer size : " << container.size();
349
+ std::cout << "\nComputing hilbert invariant ..." << std::flush;
350
+ }
351
+ if (zero_pad) {
352
+ // +1 is bc degree is on first axis.
353
+ for (auto i = 1; i < st_multi.num_parameters() + 1; i++)
354
+ grid_shape[i]--; // get hilbert surface computes according to grid_shape.
355
+ // for (auto i : std::views::iota(1,st_multi.num_parameters()+1))
356
+ // grid_shape[i]--; // get hilbert surface computes according to grid_shape.
357
+ }
358
+
359
+ oneapi::tbb::task_arena arena(n_jobs); // limits the number of threads
360
+ arena.execute([&] {
361
+ get_hilbert_surface(st_multi,
362
+ container,
363
+ grid_shape,
364
+ degrees,
365
+ coordinates_to_compute,
366
+ fixed_values,
367
+ true,
368
+ zero_pad,
369
+ expand_collapse);
370
+ });
371
+
372
+ if (verbose) {
373
+ std::cout << "Done.\n";
374
+ std::cout << "Computing mobius inversion ..." << std::flush;
375
+ }
376
+
377
+ // for (indices_type axis :
378
+ // std::views::iota(2,st_multi.num_parameters()+1)) // +1 for the
379
+ // degree in axis 0
380
+ for (indices_type axis = 2u; axis < st_multi.num_parameters() + 1; axis++) container.differentiate(axis);
381
+ if (verbose) {
382
+ std::cout << "Done.\n";
383
+ std::cout << "Sparsifying the measure ..." << std::flush;
384
+ }
385
+ auto raw_signed_measure = container.sparsify();
386
+ if (verbose) {
387
+ std::cout << "Done.\n";
388
+ }
389
+ return raw_signed_measure;
390
+ }
391
+
392
+ template <typename Filtration, typename dtype, typename indices_type, typename... Args>
393
+ void get_hilbert_surface_python(python_interface::Simplex_tree_multi_interface<Filtration> &st_multi,
394
+ dtype *data_ptr,
395
+ std::vector<indices_type> grid_shape,
396
+ const std::vector<indices_type> degrees,
397
+ const bool mobius_inversion,
398
+ const bool zero_pad,
399
+ indices_type n_jobs,
400
+ bool expand_collapse) {
401
+ constexpr const bool verbose = false;
402
+ if (degrees.size() == 0) return;
403
+ // const bool verbose = false;
404
+ // auto &st_multi =
405
+ // get_simplextree_from_pointer<python_interface::interface_multi<Filtration>>(simplextree_ptr);
406
+ tensor::static_tensor_view<dtype, indices_type> container(data_ptr, grid_shape); // assumes its a zero tensor
407
+ std::vector<indices_type> coordinates_to_compute(st_multi.num_parameters());
408
+ for (auto i = 0u; i < coordinates_to_compute.size(); i++) coordinates_to_compute[i] = i;
409
+ // for (auto [c,i] : std::views::zip(coordinates_to_compute,
410
+ // std::views::iota(0,st_multi.num_parameters()))) c=i; // NIK apple
411
+ // clang
412
+ std::vector<indices_type> fixed_values(st_multi.num_parameters());
413
+
414
+ if (verbose) {
415
+ std::cout << "Container shape : ";
416
+ for (auto r : container.get_resolution()) std::cout << r << ", ";
417
+ std::cout << "\nContainer size : " << container.size();
418
+ std::cout << "\nComputing hilbert invariant ...";
419
+ }
420
+ if (zero_pad) {
421
+ // +1 is bc degree is on first axis.
422
+ for (auto i = 1; i < st_multi.num_parameters() + 1; i++)
423
+ grid_shape[i]--; // get hilbert surface computes according to grid_shape.
424
+ // for (auto i : std::views::iota(1,st_multi.num_parameters()+1))
425
+ // grid_shape[i]--; // get hilbert surface computes according to grid_shape.
426
+ }
427
+
428
+ oneapi::tbb::task_arena arena(n_jobs); // limits the number of threads
429
+ arena.execute([&] {
430
+ get_hilbert_surface(st_multi,
431
+ container,
432
+ grid_shape,
433
+ degrees,
434
+ coordinates_to_compute,
435
+ fixed_values,
436
+ mobius_inversion,
437
+ zero_pad,
438
+ expand_collapse);
439
+ });
440
+
441
+ if (mobius_inversion)
442
+ for (indices_type axis = 2u; axis < st_multi.num_parameters() + 1; axis++) container.differentiate(axis);
443
+ return;
444
+ }
445
+
446
+ /// FROM SLICER
447
+ ///
448
+ ///
449
+
450
+ template <typename PersBackend, typename Filtration, typename dtype, typename index_type>
451
+ inline void compute_2d_hilbert_surface(
452
+ tbb::enumerable_thread_specific<std::pair<typename Gudhi::multi_persistence::Slicer<Filtration, PersBackend>::Thread_safe,
453
+ std::vector<index_type>>> &thread_stuff,
454
+ const tensor::static_tensor_view<dtype, index_type> &out, // assumes its a zero tensor
455
+ const std::vector<index_type> grid_shape,
456
+ const std::vector<index_type> degrees,
457
+ index_type i,
458
+ index_type j,
459
+ const std::vector<index_type> fixed_values,
460
+ const bool mobius_inverion,
461
+ const bool zero_pad,
462
+ const bool ignore_inf = true ) {
463
+ using value_type = typename Filtration::value_type;
464
+
465
+ constexpr const bool verbose = false;
466
+ index_type I = grid_shape[i + 1], J = grid_shape[j + 1];
467
+ if constexpr (verbose) std::cout << "Grid shape : " << I << " " << J << std::endl;
468
+ tbb::parallel_for(0, J, [&](index_type height) {
469
+ // SIMPLEXTREE INIT
470
+ auto &[slicer, coordinates_container] = thread_stuff.local();
471
+ for (auto i = 0u; i < fixed_values.size(); i++) coordinates_container[i + 1] = fixed_values[i];
472
+
473
+ coordinates_container[j + 1] = height;
474
+
475
+ auto &slice_filtration = slicer.get_slice();
476
+ const auto &multi_filtration = slicer.get_filtration_values();
477
+
478
+ for (std::size_t k = 0; k < multi_filtration.size(); k++) {
479
+ slice_filtration[k] = Filtration::T_inf;
480
+ for (unsigned int g = 0; g < multi_filtration[k].num_generators(); ++g) {
481
+ slice_filtration[k] = std::min(slice_filtration[k],
482
+ static_cast<value_type>(horizontal_line_filtration2(
483
+ multi_filtration[k], g, height, i, j, fixed_values)));
484
+ }
485
+ }
486
+
487
+ if constexpr (verbose) {
488
+ std::cout << "Coords : " << height << " [";
489
+ for (auto stuff : fixed_values) std::cout << stuff << " ";
490
+ std::cout << "]" << std::endl;
491
+ }
492
+
493
+ using bc_type = typename Gudhi::multi_persistence::Slicer<Filtration, PersBackend>::template Multi_dimensional_flat_barcode<>;
494
+
495
+ if constexpr (PersBackend::is_vine) {
496
+ if (!slicer.persistence_computation_is_initialized()) [[unlikely]] {
497
+ slicer.initialize_persistence_computation();
498
+ } else {
499
+ slicer.vineyard_update();
500
+ }
501
+ } else {
502
+ slicer.initialize_persistence_computation(ignore_inf);
503
+ }
504
+
505
+ bc_type barcodes = slicer.template get_flat_barcode<true>();
506
+ index_type degree_index = 0;
507
+ for (auto degree : degrees) { // TODO range view cartesian product
508
+ const auto &barcode = barcodes[degree];
509
+ coordinates_container[0] = degree_index;
510
+ for (const auto &bar : barcode) {
511
+ auto birth = bar[0]; // float
512
+ auto death = bar[1];
513
+ if (birth > I) // some birth can be infinite
514
+ continue;
515
+
516
+ if (!mobius_inverion) {
517
+ coordinates_container[i + 1] = static_cast<index_type>(birth);
518
+ index_type shift_value = out.get_cum_resolution()[i + 1];
519
+ index_type border = I;
520
+ // index_type border = out.get_resolution()[i+1];
521
+ dtype *ptr = &out[coordinates_container];
522
+ auto stop_value = death > static_cast<value_type>(border) ? border : static_cast<index_type>(death);
523
+ // Warning : for some reason linux static casts float inf to -min_int
524
+ // so min doesnt work.
525
+ if constexpr (verbose) {
526
+ std::cout << "Adding : (";
527
+ for (auto stuff : coordinates_container) std::cout << stuff << ", ";
528
+ std::cout << ") With death " << death << " casted at " << static_cast<index_type>(death)
529
+ << "with threshold at" << stop_value << " with " << border << std::endl;
530
+ }
531
+ for (index_type b = birth; b < stop_value; b++) {
532
+ (*ptr)++; // adds one to the vector
533
+ ptr += shift_value; // shift the pointer to the next element in the
534
+ // segment [birth, death]
535
+ }
536
+ } else {
537
+ coordinates_container[i + 1] = static_cast<index_type>(birth);
538
+ out[coordinates_container]++;
539
+
540
+ if constexpr (verbose) {
541
+ std::cout << "Coordinate : ";
542
+ for (auto c : coordinates_container) std::cout << c << ", ";
543
+ std::cout << std::endl;
544
+ std::cout << "axis, death, resolution : " << i + 1 << ", " << std::to_string(death) << ", "
545
+ << out.get_resolution()[i + 1];
546
+ std::cout << std::endl;
547
+ }
548
+
549
+ if (death < I) {
550
+ coordinates_container[i + 1] = static_cast<index_type>(death);
551
+ out[coordinates_container]--;
552
+ } else if (zero_pad) {
553
+ coordinates_container[i + 1] = I - 1;
554
+ out[coordinates_container]--;
555
+ }
556
+ }
557
+ }
558
+ degree_index++;
559
+ }
560
+ });
561
+ return;
562
+ }
563
+
564
+ template <typename PersBackend, typename Filtration, typename dtype, typename index_type>
565
+ void _rec_get_hilbert_surface(
566
+ tbb::enumerable_thread_specific<std::pair<typename Gudhi::multi_persistence::Slicer<Filtration, PersBackend>::Thread_safe,
567
+ std::vector<index_type>>> &thread_stuff,
568
+ const tensor::static_tensor_view<dtype, index_type> &out, // assumes its a zero tensor
569
+ const std::vector<index_type> grid_shape,
570
+ const std::vector<index_type> degrees,
571
+ std::vector<index_type> coordinates_to_compute,
572
+ const std::vector<index_type> fixed_values,
573
+ const bool mobius_inverion = true,
574
+ const bool zero_pad = false,
575
+ const bool ignore_inf = true) {
576
+ constexpr const bool verbose = false;
577
+
578
+ if constexpr (verbose) {
579
+ std::cout << "Computing coordinates (";
580
+ for (auto c : coordinates_to_compute) std::cout << c << ", ";
581
+ std::cout << "). with fixed values (";
582
+ for (auto c : fixed_values) {
583
+ std::cout << c << ", ";
584
+ }
585
+ std::cout << ")." << std::endl;
586
+ }
587
+ if (coordinates_to_compute.size() == 2) {
588
+ compute_2d_hilbert_surface<PersBackend, Filtration, dtype, index_type>(thread_stuff,
589
+ out, // assumes its a zero tensor
590
+ grid_shape,
591
+ degrees,
592
+ coordinates_to_compute[0],
593
+ coordinates_to_compute[1],
594
+ fixed_values,
595
+ mobius_inverion,
596
+ zero_pad, ignore_inf);
597
+ return;
598
+ }
599
+
600
+ // coordinate to iterate.size --
601
+ auto coordinate_to_iterate = coordinates_to_compute.back();
602
+ coordinates_to_compute.pop_back();
603
+ tbb::parallel_for(0, grid_shape[coordinate_to_iterate + 1], [&](index_type z) {
604
+ // Updates fixes values that defines the slice
605
+ std::vector<index_type> _fixed_values = fixed_values; // TODO : do not copy this //thread local
606
+ _fixed_values[coordinate_to_iterate] = z;
607
+ _rec_get_hilbert_surface<PersBackend, Filtration, dtype, index_type>(
608
+ thread_stuff, out, grid_shape, degrees, coordinates_to_compute, _fixed_values, mobius_inverion, zero_pad, ignore_inf);
609
+ });
610
+ // rmq : with mobius_inversion + rec, the coordinates to compute size is 2 =>
611
+ // first coord is always the initial 1st coord.
612
+ // => inversion is only needed for coords > 2
613
+ }
614
+
615
+ template <typename PersBackend, typename Filtration, typename dtype, typename index_type>
616
+ void get_hilbert_surface(Gudhi::multi_persistence::Slicer<Filtration, PersBackend> &slicer,
617
+ const tensor::static_tensor_view<dtype, index_type> &out, // assumes its a zero tensor
618
+ const std::vector<index_type> &grid_shape,
619
+ const std::vector<index_type> &degrees,
620
+ std::vector<index_type> coordinates_to_compute,
621
+ const std::vector<index_type> &fixed_values,
622
+ const bool mobius_inverion = true,
623
+ const bool zero_pad = false,
624
+ const bool ignore_inf = true) {
625
+
626
+ if (degrees.size() == 0) return;
627
+ // wrapper arount the rec version, that initialize the thread variables.
628
+ if (coordinates_to_compute.size() < 2)
629
+ throw std::logic_error("Not implemented for " + std::to_string(coordinates_to_compute.size()) + "<2 parameters.");
630
+ using ThreadSafe = typename Gudhi::multi_persistence::Slicer<Filtration, PersBackend>::Thread_safe;
631
+ ThreadSafe slicer_thread(slicer);
632
+ std::vector<index_type> coordinates_container(slicer_thread.get_number_of_parameters() + 1); // +1 for degree
633
+ // coordinates_container.reserve(fixed_values.size()+1);
634
+ // coordinates_container.push_back(0); // degree
635
+ // for (auto c : fixed_values) coordinates_container.push_back(c);
636
+ std::pair<ThreadSafe, std::vector<index_type>> thread_data_initialization = {slicer_thread, coordinates_container};
637
+ tbb::enumerable_thread_specific<std::pair<ThreadSafe, std::vector<index_type>>> thread_stuff(
638
+ thread_data_initialization); // this has a fixed size, so
639
+ // init should be benefic
640
+ _rec_get_hilbert_surface<PersBackend, Filtration, dtype, index_type>(
641
+ thread_stuff, out, grid_shape, degrees, coordinates_to_compute, fixed_values, mobius_inverion, zero_pad, ignore_inf);
642
+ }
643
+
644
+ template <typename PersBackend,
645
+ typename Filtration,
646
+ typename dtype,
647
+ typename indices_type,
648
+ typename... Args>
649
+ void get_hilbert_surface_python(Gudhi::multi_persistence::Slicer<Filtration, PersBackend> &slicer,
650
+ dtype *data_ptr,
651
+ std::vector<indices_type> grid_shape,
652
+ const std::vector<indices_type> degrees,
653
+ const bool mobius_inversion,
654
+ const bool zero_pad,
655
+ const bool ignore_inf,
656
+ indices_type n_jobs) {
657
+ const bool verbose = false;
658
+ if (degrees.size() == 0) return;
659
+ // const bool verbose = false;
660
+ // auto &st_multi =
661
+ // get_simplextree_from_pointer<python_interface::interface_multi<Filtration>>(simplextree_ptr);
662
+ tensor::static_tensor_view<dtype, indices_type> container(data_ptr, grid_shape); // assumes its a zero tensor
663
+ int num_parameters = slicer.get_number_of_parameters();
664
+ std::vector<indices_type> coordinates_to_compute(num_parameters);
665
+ for (auto i = 0u; i < coordinates_to_compute.size(); i++) coordinates_to_compute[i] = i;
666
+ // for (auto [c,i] : std::views::zip(coordinates_to_compute,
667
+ // std::views::iota(0,st_multi.num_parameters()))) c=i; // NIK apple
668
+ // clang
669
+ std::vector<indices_type> fixed_values(num_parameters);
670
+
671
+ if (verbose) {
672
+ std::cout << "Container shape : ";
673
+ for (auto r : container.get_resolution()) std::cout << r << ", ";
674
+ std::cout << "\nContainer size : " << container.size();
675
+ std::cout << "\nComputing hilbert invariant ...";
676
+ }
677
+ if (zero_pad) {
678
+ // +1 is bc degree is on first axis.
679
+ for (auto i = 1; i < num_parameters + 1; i++)
680
+ grid_shape[i]--; // get hilbert surface computes according to grid_shape.
681
+ // for (auto i : std::views::iota(1,st_multi.num_parameters()+1))
682
+ // grid_shape[i]--; // get hilbert surface computes according to grid_shape.
683
+ }
684
+
685
+ oneapi::tbb::task_arena arena(PersBackend::is_vine ? 1 : n_jobs); // limits the number of threads
686
+ arena.execute([&] {
687
+ get_hilbert_surface(
688
+ slicer, container, grid_shape, degrees, coordinates_to_compute, fixed_values, mobius_inversion, zero_pad, ignore_inf);
689
+ });
690
+
691
+ if (mobius_inversion)
692
+ for (indices_type axis = 2u; axis < num_parameters + 1; axis++) container.differentiate(axis);
693
+ return;
694
+ }
695
+
696
+ template <typename PersBackend,
697
+ typename Filtration,
698
+ typename dtype,
699
+ typename indices_type,
700
+ typename... Args>
701
+ std::pair<std::vector<std::vector<indices_type>>, std::vector<dtype>> get_hilbert_signed_measure(
702
+ Gudhi::multi_persistence::Slicer<Filtration, PersBackend> &slicer,
703
+ dtype *data_ptr,
704
+ std::vector<indices_type> grid_shape,
705
+ const std::vector<indices_type> degrees,
706
+ bool zero_pad = false,
707
+ indices_type n_jobs = 0,
708
+ const bool verbose = false,
709
+ const bool ignore_inf = true){
710
+ if (degrees.size() == 0) return {{}, {}};
711
+ // const bool verbose = false;
712
+ // auto &st_multi =
713
+ // get_simplextree_from_pointer<python_interface::interface_multi<Filtration>>(simplextree_ptr);
714
+ tensor::static_tensor_view<dtype, indices_type> container(data_ptr, grid_shape); // assumes its a zero tensor
715
+ std::vector<indices_type> coordinates_to_compute(slicer.get_number_of_parameters());
716
+ for (auto i = 0u; i < coordinates_to_compute.size(); i++) coordinates_to_compute[i] = i;
717
+ // for (auto [c,i] : std::views::zip(coordinates_to_compute,
718
+ // std::views::iota(0,st_multi.num_parameters()))) c=i; // NIK apple
719
+ // clang
720
+ std::vector<indices_type> fixed_values(slicer.get_number_of_parameters());
721
+
722
+ if (verbose) {
723
+ std::cout << "Container shape : ";
724
+ for (auto r : container.get_resolution()) std::cout << r << ", ";
725
+ std::cout << "\nContainer size : " << container.size();
726
+ std::cout << "\nComputing hilbert invariant ..." << std::flush;
727
+ }
728
+ if (zero_pad) {
729
+ // +1 is bc degree is on first axis.
730
+ for (auto i = 1u; i < slicer.get_number_of_parameters() + 1; i++)
731
+ grid_shape[i]--; // get hilbert surface computes according to grid_shape.
732
+ // for (auto i : std::views::iota(1,st_multi.num_parameters()+1))
733
+ // grid_shape[i]--; // get hilbert surface computes according to grid_shape.
734
+ }
735
+
736
+ oneapi::tbb::task_arena arena(PersBackend::is_vine ? 1 : n_jobs); // limits the number of threads
737
+ arena.execute([&] {
738
+ get_hilbert_surface(slicer, container, grid_shape, degrees, coordinates_to_compute, fixed_values, true, zero_pad, ignore_inf);
739
+ });
740
+
741
+ if (verbose) {
742
+ std::cout << "Done.\n";
743
+ std::cout << "Computing mobius inversion ..." << std::flush;
744
+ }
745
+
746
+ // for (indices_type axis :
747
+ // std::views::iota(2,st_multi.num_parameters()+1)) // +1 for the
748
+ // degree in axis 0
749
+ for (indices_type axis = 2; axis < static_cast<indices_type>(slicer.get_number_of_parameters() + 1); axis++)
750
+ container.differentiate(axis);
751
+ if (verbose) {
752
+ std::cout << "Done.\n";
753
+ std::cout << "Sparsifying the measure ..." << std::flush;
754
+ }
755
+ auto raw_signed_measure = container.sparsify();
756
+ if (verbose) {
757
+ std::cout << "Done." << std::endl;
758
+ }
759
+ return raw_signed_measure;
760
+ }
761
+ }}} // namespace Gudhi::multiparameter::hilbert_function