melage 0.0.65__py3-none-any.whl → 1.0.0__py3-none-any.whl

melage/widgets/MaskOperations.py

@@ -1,147 +0,0 @@
-__AUTHOR__ = 'Bahram Jafrasteh'
-
-
-from PyQt5 import QtCore, QtGui, QtWidgets
-from PyQt5.QtCore import Qt
-from PyQt5.QtCore import pyqtSignal
-
-
-
-class MaskOperations(QtWidgets.QDialog):
-    """
-    Image MASKING OPERATION
-    """
-    buttonpressed = pyqtSignal(object)
-    closeSig = pyqtSignal()
-
-    def __init__(self, parent=None):
-        QtWidgets.QDialog.__init__(self, parent)
-        self.setWindowTitle("Child Window!")
-        self.inputimage = None
-
-        self.MessageBox = QtWidgets.QMessageBox(self)
-        self.setupUi()
-
-    def setupUi(self):
-        Form = self.window()
-        Form.setObjectName("N4")
-        Form.resize(759, 140)
-        self.widget = QtWidgets.QWidget(Form)
-        self.widget.setGeometry(QtCore.QRect(43, 20, 644, 89))
-        self.widget.setObjectName("widget")
-        self.gridLayout = QtWidgets.QGridLayout(self.widget)
-        self.gridLayout.setContentsMargins(0, 0, 0, 0)
-        self.gridLayout.setObjectName("gridLayout")
-
-        self.splitter = QtWidgets.QSplitter(self.widget)
-        self.splitter.setOrientation(QtCore.Qt.Horizontal)
-        self.splitter.setObjectName("splitter")
-
-        #self.gridLayout.addWidget(self.splitter, 0, 1, 1, 1)
-
-        self.mask_operation = QtWidgets.QComboBox(self.widget)
-
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum)
-        sizePolicy.setHorizontalStretch(0)
-        sizePolicy.setVerticalStretch(0)
-        self.mask_operation.setMaximumSize(50,50)
-        sizePolicy.setHeightForWidth(self.mask_operation.sizePolicy().hasWidthForHeight())
-        #self.mask_operation.setSizePolicy(sizePolicy)
-        self.mask_operation.setObjectName("+")
-        self.gridLayout.addWidget(self.mask_operation, 0, 2, 1, 1)
-        self._combobox_colors = QtWidgets.QComboBox(self.widget)
-        self._combobox_colors.setObjectName("_combobox_colors")
-
-        self._combobox_colors2 = QtWidgets.QComboBox(self.widget)
-        self._combobox_colors2.setObjectName("_combobox_colors")
-        self.gridLayout.addWidget(self._combobox_colors2, 0, 0, 1, 2)
-        self.gridLayout.addWidget(self._combobox_colors, 0,5, 1, 2)
-
-
-
-        #self.pushButton_2 = QtWidgets.QPushButton(self.widget)
-        #self.pushButton_2.setObjectName("pushButton")
-        #self.gridLayout.addWidget(self.pushButton_2, 0, 6, 1, 1)
-        self.pushButton = QtWidgets.QPushButton(self.widget)
-        self.pushButton.setObjectName("pushButton_2")
-        self.gridLayout.addWidget(self.pushButton, 2, 7, 1, 1)
-
-        #self.gridLayout.addWidget(self.progressBar, 1, 0, 1, 5)
-        #spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
-        #self.gridLayout.addItem(spacerItem, 0, 1, 1, 4)
-        self.comboBox_image = QtWidgets.QComboBox(self.widget)
-        self.comboBox_image.setObjectName("comboBox_image")
-        self.comboBox_image.addItem("")
-        self.comboBox_image.addItem("")
-        self.gridLayout.addWidget(self.comboBox_image, 1, 0, 1, 1)
-
-
-        self.retranslateUi(Form)
-        QtCore.QMetaObject.connectSlotsByName(Form)
-
-        for i, operation in enumerate(['+', '-']):
-            self.mask_operation.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
-            self.mask_operation.addItem(" {} ".format(operation))
-
-        self.pushButton.clicked.connect(self.accepted_emit)
-
-    def closeEvent(self, a0: QtGui.QCloseEvent) -> None:
-        self.closeSig.emit()
-        super(MaskOperations, self).closeEvent(a0)
-
-    def accept_emit(self):
-        self.mask_operation.text()
-        num = self.mask_operation.text()
-        if num not in ['+', '-', '']:
-            self.message()
-            return False
-        return True
-
-    def setComboBoxColors(self, color_name):
-        self._combobox_colors.clear()
-        self._combobox_colors2.clear()
-        for colr in color_name:
-            #self._combobox_colors.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
-            self._combobox_colors.addItem("   {}   ".format(colr))
-            self._combobox_colors2.addItem("   {}   ".format(colr))
-
-    def retranslateUi(self, Form):
-        _translate = QtCore.QCoreApplication.translate
-        Form.setWindowTitle(_translate("Form", "Mask Operations"))
-
-        self.comboBox_image.setItemText(0, _translate("Form", "        View 1        "))
-        self.comboBox_image.setItemText(1, _translate("Form", "      View 2      "))
-        #self.label_timer.setText(_translate("Form", "00:00"))
-        self.pushButton.setText(_translate("Form", "Apply"))
-        self.pushButton.setVisible(True)
-
-    def message(self):
-
-        self.MessageBox.setText('Please fill with +,-')
-        self.mask_operation.setText('+')
-        self.MessageBox.setWindowTitle('Warning')
-        self.MessageBox.show()
-
-    def accepted_emit(self):
-
-        #self._selectedColor = int(float(self._combobox_colors.currentText()))
-
-        index_image = self.comboBox_image.currentIndex()
-
-        index_color = self._combobox_colors.currentIndex()
-        index_color2 = self._combobox_colors2.currentIndex()
-        if index_color2==index_color:
-            return
-        operation = self.mask_operation.currentText().strip(' ')
-        self.buttonpressed.emit([index_image, index_color2, index_color, operation])
-
-
-
-def run():
-    import sys
-    app = QtWidgets.QApplication(sys.argv)
-    window = MaskOperations()
-    window.show()
-    sys.exit(app.exec_())
-if __name__ == '__main__':
-    run()

melage/widgets/N4Dialog.py

@@ -1,241 +0,0 @@
-__AUTHOR__ = 'Bahram Jafrasteh'
-
-
-from PyQt5 import QtCore, QtGui, QtWidgets
-from PyQt5.QtCore import Qt
-from PyQt5.QtCore import pyqtSignal
-
-
-class Worker(QtCore.QObject):
-
-    finished = pyqtSignal()
-    def __init__(self, id: int):
-        super().__init__()
-        self.__id = id
-        self.param_set = False
-        self.inputimage = None
-        self.out = None
-    #@QtCore.pyqtSlot()
-    def run(self):
-        if self.inputimage is None or not self.param_set:
-            return
-        from melage.utils.utils import N4_bias_correction
-        #self.progressBar.setVisible(True)
-        #self.progressBar.setEnabled(True)
-        #self.setEnabled(True)
-        #self.progressBar.setValue(10)
-
-
-        out = N4_bias_correction(self.inputimage, use_otsu=self._outsu,
-                                 shrinkFactor=self._shrinkfactor, numberFittingLevels=self._filtering_level,
-                                 max_iter=self._max_iter)
-
-        ##self.pushButton_2.setVisible(True)
-        ##self.progressBar.setValue(100)
-        ##self.progressBar.setVisible(False)
-        self.inputimage = None
-        self.out = out
-        self.param_set = False
-        self.finished.emit()
-        #self.close()
-
-    def set_params(self, inpim, params, affine):
-        self.param_set = True
-        [self._max_iter, self._shrinkfactor, self._filtering_level, self._outsu] = params
-        from melage.utils.utils import make_image_using_affine
-        self.inputimage = make_image_using_affine(inpim, affine)
-
-
-class N4Dialog(QtWidgets.QDialog):
-    """
-    N4 bias filed correction dialogue
-    """
-    buttonpressed = pyqtSignal(object)
-    buttonpressed2 = pyqtSignal(object)
-    closeSig = pyqtSignal()
-    def __init__(self, parent=None):
-        QtWidgets.QDialog.__init__(self, parent)
-        self.setWindowTitle("Child Window!")
-        self.inputimage = None
-
-
-        self.setupUi()
-
-    def setupUi(self):
-        Form = self.window()
-        Form.setObjectName("N4")
-        Form.resize(759, 140)
-        self.grid_main = QtWidgets.QGridLayout(self)
-        self.grid_main.setContentsMargins(0,0,0,0)
-        self.grid_main.setObjectName("gridLayout")
-        self.widget = QtWidgets.QWidget()
-        #self.widget.setGeometry(QtCore.QRect(43, 20, 644, 89))
-        self.widget.setObjectName("widget")
-        self.gridLayout = QtWidgets.QGridLayout(self.widget)
-        self.gridLayout.setContentsMargins(10, 10, 10,10)
-        self.gridLayout.setObjectName("gridLayout")
-        self.checkBox = QtWidgets.QCheckBox(self.widget)
-        self.checkBox.setObjectName("checkBox")
-        self.gridLayout.addWidget(self.checkBox, 0, 0, 1, 1)
-        self.splitter = QtWidgets.QSplitter(self.widget)
-        self.splitter.setOrientation(QtCore.Qt.Horizontal)
-        self.splitter.setObjectName("splitter")
-        self.label_filterlevel = QtWidgets.QLabel(self.splitter)
-        self.label_filterlevel.setAlignment(QtCore.Qt.AlignCenter)
-        self.label_filterlevel.setObjectName("label_filterlevel")
-        self.gridLayout.addWidget(self.splitter, 0, 1, 1, 1)
-        self.comboBox_filterlevel = QtWidgets.QComboBox(self.widget)
-        self.comboBox_filterlevel.setObjectName("comboBox_filterlevel")
-
-        self.gridLayout.addWidget(self.comboBox_filterlevel, 0, 2, 1, 1)
-        self.label_shrink = QtWidgets.QLabel(self.widget)
-        self.label_shrink.setAlignment(QtCore.Qt.AlignCenter)
-        self.label_shrink.setObjectName("label_shrink")
-        self.gridLayout.addWidget(self.label_shrink, 0, 3, 1, 1)
-        self.combobox_shrink = QtWidgets.QComboBox(self.widget)
-        self.combobox_shrink.setObjectName("combobox_shrink")
-
-        self.gridLayout.addWidget(self.combobox_shrink, 0, 4, 1, 1)
-        self.label_5 = QtWidgets.QLabel(self.widget)
-        self.label_5.setAlignment(QtCore.Qt.AlignCenter)
-        self.label_5.setObjectName("label_5")
-        self.gridLayout.addWidget(self.label_5, 0, 5, 1, 1)
-        self.lineEdit = QtWidgets.QLineEdit(self.widget)
-        self.lineEdit.setAutoFillBackground(False)
-        self.lineEdit.setAlignment(QtCore.Qt.AlignCenter)
-        self.lineEdit.setDragEnabled(False)
-        self.lineEdit.setReadOnly(False)
-        self.lineEdit.setPlaceholderText("")
-        self.lineEdit.setCursorMoveStyle(QtCore.Qt.LogicalMoveStyle)
-        self.lineEdit.setClearButtonEnabled(False)
-        self.lineEdit.setObjectName("lineEdit")
-        self.gridLayout.addWidget(self.lineEdit, 0, 6, 1, 1)
-        self.pushButton_2 = QtWidgets.QPushButton(self.widget)
-        self.pushButton_2.setObjectName("pushButton")
-        self.gridLayout.addWidget(self.pushButton_2, 1, 6, 1, 1)
-        self.pushButton = QtWidgets.QPushButton(self.widget)
-        self.pushButton.setObjectName("pushButton_2")
-        self.gridLayout.addWidget(self.pushButton, 2, 6, 1, 1)
-        self.progressBar = QtWidgets.QProgressBar(self.widget)
-        self.progressBar.setEnabled(False)
-        self.progressBar.setProperty("value", 0)
-        self.progressBar.setAlignment(QtCore.Qt.AlignCenter)
-        self.progressBar.setObjectName("progressBar")
-        self.gridLayout.addWidget(self.progressBar, 1, 0, 1, 6)
-        spacerItem = QtWidgets.QSpacerItem(40, 20, QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Minimum)
-        self.gridLayout.addItem(spacerItem, 2, 2, 1, 4)
-        self.comboBox_image = QtWidgets.QComboBox(self.widget)
-        self.comboBox_image.setObjectName("comboBox_image")
-        self.comboBox_image.addItem("")
-        self.comboBox_image.addItem("")
-        self.gridLayout.addWidget(self.comboBox_image, 2, 0, 1, 2)
-
-        #self.label_timer = QtWidgets.QLabel(self.widget)
-        #self.label_timer.setAlignment(QtCore.Qt.AlignCenter)
-        #self.label_timer.setObjectName("label")
-        #self.gridLayout.addWidget(self.label_timer, 1, 0, 1, 1)
-        self.grid_main.addWidget(self.widget)
-        self.retranslateUi(Form)
-        QtCore.QMetaObject.connectSlotsByName(Form)
-
-
-
-        for i in range(12):
-            self.comboBox_filterlevel.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
-            self.comboBox_filterlevel.addItem("  {}  ".format(i+1))
-
-        for i in range(4):
-            self.combobox_shrink.setItemData(i, Qt.AlignCenter, Qt.TextAlignmentRole)
-            self.combobox_shrink.addItem("    {}    ".format(i+1))
-
-        self.pushButton.clicked.connect(self.accepted_emit)
-
-
-        self.pushButton_2.clicked.connect(self.back_to_orig)
-        self.lineEdit.setValidator(QtGui.QIntValidator())
-        self.lineEdit.setMaxLength(2)
-        self.progressBar.setVisible(False)
-        self.comboBox_filterlevel.setCurrentIndex(4)
-        self.lineEdit.setText('5')
-        self.pushButton_2.setVisible(False)
-        self.checkBox.setCheckState(Qt.Checked)
-
-
-    def startTimer(self):
-        self.time_spent = 0
-
-        self.myTimer = QtCore.QTimer(self)
-        self.myTimer.timeout.connect(self.timerTimeout)
-        self.myTimer.start(1000)
-
-    def timerTimeout(self):
-        self.time_spent += 1
-        if self.time_spent == 0:
-            self.time_spent = 50
-        self.label_timer.setText(str(self.time_spent))
-
-
-
-    def closeEvent(self, a0: QtGui.QCloseEvent) -> None:
-        self.closeSig.emit()
-        super(N4Dialog, self).closeEvent(a0)
-    def back_to_orig(self):
-        botton = self.comboBox_image.currentIndex()
-        self.buttonpressed2.emit(botton)
-    def retranslateUi(self, Form):
-        _translate = QtCore.QCoreApplication.translate
-        Form.setWindowTitle(_translate("Form", "N4 Bias Field Correction"))
-        self.checkBox.setText(_translate("Form", "Otsu"))
-
-        for i in range(12):
-            if i <4:
-                self.combobox_shrink.setItemText(i, _translate("Form", "{}".format(i + 1)))
-            self.comboBox_filterlevel.setItemText(i, _translate("Form", "{}".format(i + 1)))
-
-        #self.comboBox.setCurrentIndex(1)
-        self.comboBox_filterlevel.setCurrentIndex(2)
-        self.checkBox.setCheckState(Qt.Checked)
-        self.label_filterlevel.setText(_translate("Form", "Fitting Level"))
-        self.label_5.setText(_translate("Form", "Max Iterations"))
-        self.pushButton_2.setText(_translate("Form", "Original"))
-        self.label_shrink.setText(_translate("Form", "ShrinkFactor"))
-        self.comboBox_image.setItemText(0, _translate("Form", "        View 1        "))
-        self.comboBox_image.setItemText(1, _translate("Form", "      View 2      "))
-        #self.label_timer.setText(_translate("Form", "00:00"))
-        self.pushButton.setText(_translate("Form", "Apply"))
-        self.pushButton.setVisible(True)
-    def message(self):
-
-        self.MessageBox.setText('Please fill with numeric (!=0) and text')
-        self.MessageBox.setWindowTitle('Warning')
-        self.MessageBox.show()
-
-    def accepted_emit(self):
-        self.lineEdit.text()
-        num = self.lineEdit.text()
-        if num == '' or float(num) == 0:
-            self.message()
-            return False
-        self._outsu = False
-        if self.checkBox.checkState()==Qt.Checked:
-            self._outsu = True
-        self._max_iter = int(float(self.lineEdit.text()))
-        self._shrinkfactor = int(float(self.combobox_shrink.currentText()))
-        self._filtering_level = int(float(self.comboBox_filterlevel.currentText()))
-        botton = self.comboBox_image.currentIndex()
-        self.params = [self._max_iter, self._shrinkfactor, self._filtering_level, self._outsu]
-
-
-
-        self.buttonpressed.emit(botton)
-
-
-
-def run():
-    import sys
-    app = QtWidgets.QApplication(sys.argv)
-    window = N4Dialog()
-    window.show()
-    sys.exit(app.exec_())
-if __name__ == '__main__':
-    run()