melage 0.0.65__py3-none-any.whl → 1.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (661) hide show
  1. assets/copyright.png +0 -0
  2. assets/resource/color/FreeSurferColorLUT.txt +2006 -0
  3. assets/resource/color/LUT_30.txt +31 -0
  4. assets/resource/color/SynthSeg.txt +34 -0
  5. assets/resource/color/lut_prostate.txt +20 -0
  6. assets/resource/horizontalview.png +0 -0
  7. assets/resource/main.ico +0 -0
  8. assets/resource/theme/create_ticks.py +85 -0
  9. assets/resource/theme/rc/checkbox_checked.png +0 -0
  10. assets/resource/theme/rc/checkbox_checked@2x.png +0 -0
  11. assets/resource/theme/rc/checkbox_checked_disabled.png +0 -0
  12. assets/resource/theme/rc/checkbox_checked_disabled@2x.png +0 -0
  13. assets/resource/theme/rc/checkbox_checked_focus.png +0 -0
  14. assets/resource/theme/rc/checkbox_checked_focus@2x.png +0 -0
  15. assets/resource/theme/rc/checkbox_checked_pressed.png +0 -0
  16. assets/resource/theme/rc/checkbox_checked_pressed@2x.png +0 -0
  17. assets/resource/theme/rc/checkbox_indeterminate.png +0 -0
  18. assets/resource/theme/rc/checkbox_indeterminate@2x.png +0 -0
  19. assets/resource/theme/rc/checkbox_indeterminate_disabled.png +0 -0
  20. assets/resource/theme/rc/checkbox_indeterminate_disabled@2x.png +0 -0
  21. assets/resource/theme/rc/checkbox_indeterminate_focus.png +0 -0
  22. assets/resource/theme/rc/checkbox_indeterminate_focus@2x.png +0 -0
  23. assets/resource/theme/rc/checkbox_indeterminate_pressed.png +0 -0
  24. assets/resource/theme/rc/checkbox_indeterminate_pressed@2x.png +0 -0
  25. assets/resource/theme/rc/checkbox_unchecked.png +0 -0
  26. assets/resource/theme/rc/checkbox_unchecked@2x.png +0 -0
  27. assets/resource/theme/rc/checkbox_unchecked_disabled.png +0 -0
  28. assets/resource/theme/rc/checkbox_unchecked_disabled@2x.png +0 -0
  29. assets/resource/theme/rc/checkbox_unchecked_focus.png +0 -0
  30. assets/resource/theme/rc/checkbox_unchecked_focus@2x.png +0 -0
  31. assets/resource/theme/rc/checkbox_unchecked_pressed.png +0 -0
  32. assets/resource/theme/rc/checkbox_unchecked_pressed@2x.png +0 -0
  33. assets/resource/verticalview.png +0 -0
  34. assets/resource/zoom_in.png +0 -0
  35. assets/resource/zoom_neutral (copy).png +0 -0
  36. assets/resource/zoom_neutral.png +0 -0
  37. assets/resource/zoom_out.png +0 -0
  38. data/MNI/mni_icbm152_t1_tal_nlin_sym_09a.nii +0 -0
  39. data/MNI/mni_icbm152_t1_tal_nlin_sym_09a_masked.nii.gz +0 -0
  40. data/MNI/mni_icbm152_t1_tal_nlin_sym_09a_seg.nii.gz +0 -0
  41. docs/manual_images/3D_rightc.png +0 -0
  42. docs/manual_images/3D_rightc_goto.png +0 -0
  43. docs/manual_images/3D_rightc_paint.png +0 -0
  44. docs/manual_images/3D_rightc_paint_draw1.png +0 -0
  45. docs/manual_images/3D_rightc_paint_draw2.png +0 -0
  46. docs/manual_images/3D_rightc_paint_render.png +0 -0
  47. docs/manual_images/3D_rightc_paint_render2.png +0 -0
  48. docs/manual_images/3D_rightc_paint_render3.png +0 -0
  49. docs/manual_images/3D_rightc_paint_render4.png +0 -0
  50. docs/manual_images/3D_rightc_paint_render5.png +0 -0
  51. docs/manual_images/3D_rightc_paint_render6.png +0 -0
  52. docs/manual_images/3D_rightc_seg.png +0 -0
  53. docs/manual_images/exit_toolbar.png +0 -0
  54. docs/manual_images/load_image_file.png +0 -0
  55. docs/manual_images/load_image_file_openp.png +0 -0
  56. docs/manual_images/main_page.png +0 -0
  57. docs/manual_images/menu_file.png +0 -0
  58. docs/manual_images/menu_file_export.png +0 -0
  59. docs/manual_images/menu_file_import.png +0 -0
  60. docs/manual_images/menu_file_settings.png +0 -0
  61. docs/manual_images/menu_file_ss.png +0 -0
  62. docs/manual_images/open_save_load.png +0 -0
  63. docs/manual_images/panning_toolbar.png +0 -0
  64. docs/manual_images/segmentation_toolbar.png +0 -0
  65. docs/manual_images/tab_mri.png +0 -0
  66. docs/manual_images/tab_us.png +0 -0
  67. docs/manual_images/tabs.png +0 -0
  68. docs/manual_images/toolbar_tools.png +0 -0
  69. docs/manual_images/tools_basic.png +0 -0
  70. docs/manual_images/tools_bet.png +0 -0
  71. docs/manual_images/tools_cs.png +0 -0
  72. docs/manual_images/tools_deepbet.png +0 -0
  73. docs/manual_images/tools_imageinfo.png +0 -0
  74. docs/manual_images/tools_maskO.png +0 -0
  75. docs/manual_images/tools_masking.png +0 -0
  76. docs/manual_images/tools_n4b.png +0 -0
  77. docs/manual_images/tools_resize.png +0 -0
  78. docs/manual_images/tools_ruler.png +0 -0
  79. docs/manual_images/tools_seg.png +0 -0
  80. docs/manual_images/tools_threshold.png +0 -0
  81. docs/manual_images/tools_tools.png +0 -0
  82. docs/manual_images/widget_color.png +0 -0
  83. docs/manual_images/widget_color_add.png +0 -0
  84. docs/manual_images/widget_color_add2.png +0 -0
  85. docs/manual_images/widget_color_additional.png +0 -0
  86. docs/manual_images/widget_images.png +0 -0
  87. docs/manual_images/widget_images2.png +0 -0
  88. docs/manual_images/widget_images3.png +0 -0
  89. docs/manual_images/widget_marker.png +0 -0
  90. docs/manual_images/widget_mri.png +0 -0
  91. docs/manual_images/widget_mri2.png +0 -0
  92. docs/manual_images/widget_segintensity.png +0 -0
  93. docs/manual_images/widget_tab_mutualview.png +0 -0
  94. docs/manual_images/widget_tab_mutualview2.png +0 -0
  95. docs/manual_images/widget_table.png +0 -0
  96. docs/manual_images/widget_table2.png +0 -0
  97. docs/manual_images/widget_us.png +0 -0
  98. melage/__init__.py +1 -1
  99. melage/config/__init__.py +100 -0
  100. melage/core/Registration/registration.py +54 -0
  101. melage/{utils/readData.py → core/io.py} +12 -4
  102. melage/{widgets/melageAbout.py → dialogs/AboutDialog.py} +1 -1
  103. melage/dialogs/MaskOperationsDialog.py +146 -0
  104. melage/dialogs/MaskingDialog.py +139 -0
  105. melage/dialogs/RegistrationDialog.py +311 -0
  106. melage/{widgets/ImageThresholding.py → dialogs/ThresholdingDialog.py} +2 -2
  107. melage/dialogs/TransformationDialog.py +275 -0
  108. melage/dialogs/__init__.py +9 -0
  109. melage/dialogs/dynamic_gui.py +327 -0
  110. melage/{widgets/fileDialog_widget.py → dialogs/helpers/FileDialog.py} +226 -1
  111. melage/dialogs/helpers/__init__.py +5 -0
  112. melage/main.py +13 -13
  113. melage/{widgets/mainwindow_widget.py → mainwindow_widget.py} +1434 -1408
  114. melage/plugins/N4_bias/N4.py +115 -0
  115. melage/plugins/N4_bias/N4_schema.py +40 -0
  116. melage/plugins/N4_bias/main/utils.py +46 -0
  117. melage/plugins/__init__.py +2 -0
  118. melage/plugins/bet/bet.py +176 -0
  119. melage/plugins/bet/bet_schema.py +73 -0
  120. melage/{widgets/brain_extraction.py → plugins/bet/main/BET.py} +51 -316
  121. melage/plugins/change_coord/change_coord.py +197 -0
  122. melage/plugins/change_coord/change_coord_schema.py +31 -0
  123. melage/plugins/change_coord/main/utils.py +15 -0
  124. melage/{widgets/Segmentation → plugins/esfcm/main}/FCM.py +3 -5
  125. melage/plugins/esfcm/main/test.py +57 -0
  126. melage/{widgets/Segmentation → plugins/esfcm/main}/utils.py +20 -0
  127. melage/plugins/esfcm/tissue_segmentation.py +124 -0
  128. melage/plugins/esfcm/tissue_segmentation_schema.py +33 -0
  129. melage/plugins/masking_operation/mo.py +115 -0
  130. melage/plugins/masking_operation/mo_schema.py +33 -0
  131. melage/plugins/mga_net/MGA_Net.py +145 -0
  132. melage/plugins/mga_net/MGA_Net_schema.py +29 -0
  133. melage/plugins/mga_net/main/figures/Network.txt +1 -0
  134. melage/{widgets/DeepLModels/new_unet.py → plugins/mga_net/main/model/mga_net.py} +3 -3
  135. melage/plugins/mga_net/main/model/utils.py +258 -0
  136. melage/plugins/mga_net/main/test_mgaNet.py +134 -0
  137. melage/plugins/resize/resize.py +136 -0
  138. melage/plugins/resize/resize_schema.py +41 -0
  139. melage/plugins/ui_helpers.py +144 -0
  140. melage/plugins/warpseg/WarpSeg.py +195 -0
  141. melage/plugins/warpseg/WarpSeg_schema.py +41 -0
  142. melage/plugins/warpseg/__init__.py +2 -0
  143. melage/plugins/warpseg/warpseg_main/data_reader/DDSet.py +303 -0
  144. melage/plugins/warpseg/warpseg_main/data_reader/DDSetSeg.py +279 -0
  145. melage/plugins/warpseg/warpseg_main/data_reader/__init__.py +60 -0
  146. melage/plugins/warpseg/warpseg_main/data_reader/baseData.py +18 -0
  147. melage/plugins/warpseg/warpseg_main/data_reader/utils.py +267 -0
  148. melage/plugins/warpseg/warpseg_main/dist_utils.py +18 -0
  149. melage/plugins/warpseg/warpseg_main/requirements.txt +10 -0
  150. melage/plugins/warpseg/warpseg_main/test.py +272 -0
  151. melage/plugins/warpseg/warpseg_main/train.py +432 -0
  152. melage/plugins/warpseg/warpseg_main/train_reg.py +373 -0
  153. melage/plugins/warpseg/warpseg_main/verify_post_process.py +73 -0
  154. melage/plugins/warpseg/warpseg_main/voxelmorph/__init__.py +45 -0
  155. melage/plugins/warpseg/warpseg_main/voxelmorph/py/__init__.py +1 -0
  156. melage/plugins/warpseg/warpseg_main/voxelmorph/py/utils.py +99 -0
  157. melage/{widgets/Synthstrip.py → plugins/warpseg/warpseg_main/voxelmorph/torch/Unet.py} +71 -51
  158. melage/plugins/warpseg/warpseg_main/voxelmorph/torch/__init__.py +4 -0
  159. melage/plugins/warpseg/warpseg_main/voxelmorph/torch/layers.py +97 -0
  160. melage/plugins/warpseg/warpseg_main/voxelmorph/torch/losses.py +462 -0
  161. melage/plugins/warpseg/warpseg_main/voxelmorph/torch/modelio.py +77 -0
  162. melage/{widgets/DeepLModels/InfantSegment/Unet.py → plugins/warpseg/warpseg_main/voxelmorph/torch/multi_stage_net.py} +76 -52
  163. melage/plugins/warpseg/warpseg_main/voxelmorph/torch/networks.py +308 -0
  164. melage/plugins/warpseg/warpseg_main/voxelmorph/torch/utils.py +470 -0
  165. melage/{utils/DispalyIm.py → rendering/DisplayIm.py} +67 -79
  166. melage/{utils → rendering}/glScientific.py +1 -1
  167. melage/utils/__init__.py +1 -0
  168. melage/utils/utils.py +343 -196
  169. melage/widgets/{dockWidgets.py → DockWidgets.py} +123 -55
  170. melage/widgets/SettingsWidget.py +98 -0
  171. melage/widgets/__init__.py +49 -0
  172. melage/widgets/openglWidgets.py +344 -156
  173. melage/widgets/openglWidgets_bu.py +645 -0
  174. melage/widgets/plugin_manager.py +62 -0
  175. melage-1.0.0.dist-info/METADATA +953 -0
  176. melage-1.0.0.dist-info/RECORD +571 -0
  177. melage-1.0.0.dist-info/entry_points.txt +2 -0
  178. melage-1.0.0.dist-info/top_level.txt +4 -0
  179. melage/requirements22.txt +0 -25
  180. melage/requirements_old.txt +0 -28
  181. melage/resource/theme/rc/checkbox_checked.png +0 -0
  182. melage/resource/theme/rc/checkbox_checked@2x.png +0 -0
  183. melage/resource/theme/rc/checkbox_checked@2x0.png +0 -0
  184. melage/resource/theme/rc/checkbox_checked@2x000.png.png +0 -0
  185. melage/resource/theme/rc/checkbox_checked_disabled.png +0 -0
  186. melage/resource/theme/rc/checkbox_checked_disabled0.png +0 -0
  187. melage/resource/theme/rc/checkbox_checked_disabled@2x.png +0 -0
  188. melage/resource/theme/rc/checkbox_checked_disabled@2x0.png +0 -0
  189. melage/resource/theme/rc/checkbox_checked_focus.png +0 -0
  190. melage/resource/theme/rc/checkbox_checked_focus0.png +0 -0
  191. melage/resource/theme/rc/checkbox_checked_focus@2x.png +0 -0
  192. melage/resource/theme/rc/checkbox_checked_focus@2x0.png +0 -0
  193. melage/resource/theme/rc/checkbox_checked_pressed.png +0 -0
  194. melage/resource/theme/rc/checkbox_checked_pressed0.png +0 -0
  195. melage/resource/theme/rc/checkbox_checked_pressed@2x.png +0 -0
  196. melage/resource/theme/rc/checkbox_checked_pressed@2x0.png +0 -0
  197. melage/resource/theme/rc/checkbox_indeterminate.png +0 -0
  198. melage/resource/theme/rc/checkbox_indeterminate@2x.png +0 -0
  199. melage/resource/theme/rc/checkbox_indeterminate_disabled.png +0 -0
  200. melage/resource/theme/rc/checkbox_indeterminate_disabled@2x.png +0 -0
  201. melage/resource/theme/rc/checkbox_indeterminate_focus.png +0 -0
  202. melage/resource/theme/rc/checkbox_indeterminate_focus@2x.png +0 -0
  203. melage/resource/theme/rc/checkbox_indeterminate_pressed.png +0 -0
  204. melage/resource/theme/rc/checkbox_indeterminate_pressed@2x.png +0 -0
  205. melage/resource/theme/rc/checkbox_unchecked.png +0 -0
  206. melage/resource/theme/rc/checkbox_unchecked0.png +0 -0
  207. melage/resource/theme/rc/checkbox_unchecked00.png +0 -0
  208. melage/resource/theme/rc/checkbox_unchecked@2x.png +0 -0
  209. melage/resource/theme/rc/checkbox_unchecked@2x0.png +0 -0
  210. melage/resource/theme/rc/checkbox_unchecked@2x00.png +0 -0
  211. melage/resource/theme/rc/checkbox_unchecked_disabled.png +0 -0
  212. melage/resource/theme/rc/checkbox_unchecked_disabled0.png +0 -0
  213. melage/resource/theme/rc/checkbox_unchecked_disabled00.png +0 -0
  214. melage/resource/theme/rc/checkbox_unchecked_disabled@2x.png +0 -0
  215. melage/resource/theme/rc/checkbox_unchecked_disabled@2x0.png +0 -0
  216. melage/resource/theme/rc/checkbox_unchecked_disabled@2x00.png +0 -0
  217. melage/resource/theme/rc/checkbox_unchecked_focus.png +0 -0
  218. melage/resource/theme/rc/checkbox_unchecked_focus0.png +0 -0
  219. melage/resource/theme/rc/checkbox_unchecked_focus00.png +0 -0
  220. melage/resource/theme/rc/checkbox_unchecked_focus@2x.png +0 -0
  221. melage/resource/theme/rc/checkbox_unchecked_focus@2x0.png +0 -0
  222. melage/resource/theme/rc/checkbox_unchecked_focus@2x00.png +0 -0
  223. melage/resource/theme/rc/checkbox_unchecked_pressed.png +0 -0
  224. melage/resource/theme/rc/checkbox_unchecked_pressed0.png +0 -0
  225. melage/resource/theme/rc/checkbox_unchecked_pressed00.png +0 -0
  226. melage/resource/theme/rc/checkbox_unchecked_pressed@2x.png +0 -0
  227. melage/resource/theme/rc/checkbox_unchecked_pressed@2x0.png +0 -0
  228. melage/resource/theme/rc/checkbox_unchecked_pressed@2x00.png +0 -0
  229. melage/some_notes.txt +0 -3
  230. melage/utils/GMM.py +0 -720
  231. melage/utils/Shaders_bu.py +0 -314
  232. melage/utils/__init__0.py +0 -7
  233. melage/utils/glScientific_bc.py +0 -1585
  234. melage/utils/registration.py +0 -512
  235. melage/utils/source_folder.py +0 -18
  236. melage/version.txt +0 -1
  237. melage/widgets/ApplyMask.py +0 -212
  238. melage/widgets/ChangeSystem.py +0 -152
  239. melage/widgets/DeepLModels/NPP/dataset/mri_dataset_affine.py +0 -149
  240. melage/widgets/DeepLModels/NPP/models/checkpoints/npp_v1.pth.py +0 -0
  241. melage/widgets/DeepLModels/NPP/models/losses.py +0 -146
  242. melage/widgets/DeepLModels/NPP/models/model.py +0 -272
  243. melage/widgets/DeepLModels/NPP/models/utils.py +0 -303
  244. melage/widgets/DeepLModels/NPP/npp.py +0 -116
  245. melage/widgets/DeepLModels/NPP/requirements.txt +0 -8
  246. melage/widgets/DeepLModels/NPP/train/train.py +0 -116
  247. melage/widgets/DeepLModels/Unet3DAtt.py +0 -657
  248. melage/widgets/DeepLModels/Unet3D_basic.py +0 -648
  249. melage/widgets/DeepLModels/new_unet_old.py +0 -639
  250. melage/widgets/DeepLModels/new_unet_old2.py +0 -658
  251. melage/widgets/MaskOperations.py +0 -147
  252. melage/widgets/N4Dialog.py +0 -241
  253. melage/widgets/Segmentation/__init__.py +0 -588
  254. melage/widgets/SemiAutoSeg.py +0 -666
  255. melage/widgets/__init__0.py +0 -5
  256. melage/widgets/about.py +0 -246
  257. melage/widgets/activator.py +0 -147
  258. melage/widgets/be_dl.py +0 -409
  259. melage/widgets/be_dl_unet3d.py +0 -441
  260. melage/widgets/brain_extraction_dl.py +0 -887
  261. melage/widgets/brain_extraction_dl_bu.py +0 -869
  262. melage/widgets/registrationWidget.py +0 -342
  263. melage/widgets/settings_widget.py +0 -77
  264. melage/widgets/tranformationWidget.py +0 -275
  265. melage-0.0.65.dist-info/METADATA +0 -742
  266. melage-0.0.65.dist-info/RECORD +0 -501
  267. melage-0.0.65.dist-info/entry_points.txt +0 -2
  268. melage-0.0.65.dist-info/top_level.txt +0 -1
  269. {melage/resource → assets}/main.ico +0 -0
  270. {melage → assets}/resource/0circle.png +0 -0
  271. {melage → assets}/resource/0circle_faded.png +0 -0
  272. {melage → assets}/resource/3d.png +0 -0
  273. {melage → assets}/resource/3d.psd +0 -0
  274. {melage → assets}/resource/3dFaded.png +0 -0
  275. {melage → assets}/resource/Eraser.png +0 -0
  276. {melage → assets}/resource/EraserFaded.png +0 -0
  277. {melage → assets}/resource/EraserX.png +0 -0
  278. {melage → assets}/resource/EraserXFaded.png +0 -0
  279. {melage → assets}/resource/Eraser_icon.svg +0 -0
  280. {melage → assets}/resource/Hand.png +0 -0
  281. {melage → assets}/resource/HandIcons_0.png +0 -0
  282. {melage → assets}/resource/Hand_IX.png +0 -0
  283. {melage → assets}/resource/Hand_IXFaded.png +0 -0
  284. {melage → assets}/resource/Handsqueezed.png +0 -0
  285. {melage → assets}/resource/Handwriting (copy).png +0 -0
  286. {melage → assets}/resource/Handwriting.png +0 -0
  287. {melage → assets}/resource/HandwritingMinus.png +0 -0
  288. {melage → assets}/resource/HandwritingMinusX.png +0 -0
  289. {melage → assets}/resource/HandwritingPlus.png +0 -0
  290. {melage → assets}/resource/HandwritingPlusX.png +0 -0
  291. {melage → assets}/resource/Move_icon.svg +0 -0
  292. {melage → assets}/resource/PngItem_2422924.png +0 -0
  293. {melage → assets}/resource/about.png +0 -0
  294. {melage → assets}/resource/about_logo.png +0 -0
  295. {melage → assets}/resource/about_logo0.png +0 -0
  296. {melage → assets}/resource/action_check.png +0 -0
  297. {melage → assets}/resource/action_check_OFF.png +0 -0
  298. {melage → assets}/resource/arrow).png +0 -0
  299. {melage → assets}/resource/arrow.png +0 -0
  300. {melage → assets}/resource/arrowFaded.png +0 -0
  301. {melage → assets}/resource/arrow_org.png +0 -0
  302. {melage → assets}/resource/arrow_org.png.png +0 -0
  303. {melage → assets}/resource/arrows.png +0 -0
  304. {melage → assets}/resource/authors.mp4 +0 -0
  305. {melage → assets}/resource/box.png +0 -0
  306. {melage → assets}/resource/check-image-icon-0.jpg +0 -0
  307. {melage → assets}/resource/circle.png +0 -0
  308. {melage → assets}/resource/circle_faded.png +0 -0
  309. {melage → assets}/resource/circle_or.png +0 -0
  310. {melage → assets}/resource/close.png +0 -0
  311. {melage → assets}/resource/close_bg.png +0 -0
  312. {melage → assets}/resource/color/Simple.txt +0 -0
  313. {melage → assets}/resource/color/Tissue.txt +0 -0
  314. {melage → assets}/resource/color/Tissue12.txt +0 -0
  315. {melage → assets}/resource/color/albert_LUT.txt +0 -0
  316. {melage → assets}/resource/color/mcrib_LUT.txt +0 -0
  317. {melage → assets}/resource/color/pediatric1.txt +0 -0
  318. {melage → assets}/resource/color/pediatric1_old.txt +0 -0
  319. {melage → assets}/resource/color/pediatric2.txt +0 -0
  320. {melage → assets}/resource/color/pediatric3.txt +0 -0
  321. {melage → assets}/resource/color/pediatrics (copy).csv +0 -0
  322. {melage → assets}/resource/color/tissue_seg.txt +0 -0
  323. {melage → assets}/resource/contour.png +0 -0
  324. {melage → assets}/resource/contour.svg +0 -0
  325. {melage → assets}/resource/contourFaded.png +0 -0
  326. {melage → assets}/resource/contourX.png +0 -0
  327. {melage → assets}/resource/contourXFaded.png +0 -0
  328. {melage → assets}/resource/dti.png +0 -0
  329. {melage → assets}/resource/dti0.png +0 -0
  330. {melage → assets}/resource/dti222.png +0 -0
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  621. {melage → assets}/resource/theme/rc/window_undock_pressed.png +0 -0
  622. {melage → assets}/resource/theme/rc/window_undock_pressed@2x.png +0 -0
  623. {melage → assets}/resource/theme/style.qss +0 -0
  624. {melage → assets}/resource/tract.png +0 -0
  625. {melage → assets}/resource/view1.png +0 -0
  626. {melage → assets}/resource/view1_eco.png +0 -0
  627. {melage → assets}/resource/view1_mri.png +0 -0
  628. {melage → assets}/resource/view1_seg.png +0 -0
  629. {melage → assets}/resource/view2.png +0 -0
  630. {melage → assets}/resource/view2_seg.png +0 -0
  631. {melage → assets}/resource/w.png +0 -0
  632. {melage → assets}/resource/zoom_inFaded.png +0 -0
  633. /melage/resource/zoom_in.png → /assets/resource/zoom_in_old.png +0 -0
  634. {melage → assets}/resource/zoom_outFaded.png +0 -0
  635. /melage/resource/zoom_out.png → /assets/resource/zoom_out_old.png +0 -0
  636. /melage/{widgets/activation.py → dialogs/ActivationDialog.py} +0 -0
  637. /melage/{widgets/HistImage.py → dialogs/HistogramDialog.py} +0 -0
  638. /melage/{widgets/iminfo.py → dialogs/ImInfoDialog.py} +0 -0
  639. /melage/{widgets/colorwidget.py → dialogs/helpers/ColorDialog.py} +0 -0
  640. /melage/{utils/custom_QScrollBar.py → dialogs/helpers/CustomScrollbar.py} +0 -0
  641. /melage/{widgets/repeat_widget.py → dialogs/helpers/RepeatDialog.py} +0 -0
  642. /melage/{widgets/screenshot_widget.py → dialogs/helpers/ScreenshotDialog.py} +0 -0
  643. /melage/{cli.py → melage.py} +0 -0
  644. /melage/{utils/brain_extraction_helper.py → plugins/bet/main/utils.py} +0 -0
  645. /melage/{graphics → rendering}/GLGraphicsItem.py +0 -0
  646. /melage/{graphics → rendering}/GLViewWidget.py +0 -0
  647. /melage/{graphics → rendering}/Transform3D.py +0 -0
  648. /melage/{graphics → rendering}/__init__.py +0 -0
  649. /melage/{graphics → rendering}/functions.py +0 -0
  650. /melage/{utils → rendering/helpers}/Shaders_120.py +0 -0
  651. /melage/{utils → rendering/helpers}/Shaders_330.py +0 -0
  652. /melage/{graphics → rendering}/items/GLAxisItem.py +0 -0
  653. /melage/{graphics → rendering}/items/GLGridItem.py +0 -0
  654. /melage/{graphics → rendering}/items/GLPolygonItem.py +0 -0
  655. /melage/{graphics → rendering}/items/GLScatterPlotItem.py +0 -0
  656. /melage/{graphics → rendering}/items/GLVolumeItem.py +0 -0
  657. /melage/{graphics → rendering}/items/GLVolumeItem_b.py +0 -0
  658. /melage/{graphics → rendering}/items/__init__.py +0 -0
  659. /melage/{graphics → rendering}/shaders.py +0 -0
  660. /melage/widgets/{enhanceImWidget.py → EnhanceImageWidget.py} +0 -0
  661. {melage-0.0.65.dist-info → melage-1.0.0.dist-info}/WHEEL +0 -0
melage/requirements22.txt DELETED
@@ -1,25 +0,0 @@
1
- matplotlib==3.4.3
2
- nibabel==4.0.2
3
- numba==0.56.4
4
- numpy==1.23.5
5
- opencv_python_headless==4.5.5.64
6
- pickle5==0.0.11
7
- pickle-mixin==1.0.2
8
- Pillow==8.1.1 #strict
9
- pydicom==2.3.1
10
- pyFFTW==0.13.0
11
- PyOpenGL==3.1.6
12
- PyQt5==5.15.2
13
- qtwidgets==0.18
14
- scikit-image==0.19.3
15
- scikit-learn==1.1.2
16
- scipy==1.9.2
17
- SimpleITK==2.2.0
18
- vtk==9.2.2
19
- dominate==2.8.0
20
- rdp==0.8
21
- Shapely==1.8.4
22
- cryptography==38.0.2
23
- trimesh==3.17.0
24
- torch==1.12.1
25
- einops==0.6.1
melage/requirements_old.txt DELETED
@@ -1,28 +0,0 @@
1
- scikit-image==0.15.0
2
- matplotlib==3.3.3
3
- nibabel==3.2.2
4
- numba==0.50.1
5
- opencv_python_headless==4.6.0.66
6
- pickle-mixin==1.0.2
7
- Pickle5
8
- Pillow==8.4.0
9
- pydicom==2.3.1
10
- pyFFTW==0.12.00
11
- PyOpenGL==3.1.6
12
- PyQt5==5.12.1
13
- PyQt5_sip==4.19.19
14
- qtwidgets==0.18
15
- scikit-learn==0.24.2
16
- scipy==1.5.4
17
- SimpleITK==2.1.1
18
- vtk==9.2.2
19
- dataclasses==0.6
20
- Shapely==1.7.1
21
- dominate==2.6.0
22
- rdp==0.8
23
- numpy>=1.19.5
24
- cryptography==38.0.2
25
- trimesh==3.17.0
26
- setuptools>=58.1.0
27
- torch==1.12.1
28
- eniops==0.6.1
melage/some_notes.txt DELETED
@@ -1,3 +0,0 @@
1
- find . -type f -exec sed -i 's/MELAGE\.//g' {} +
2
- add __init__0.py to __init__.py
3
-