clinicedc 2.0.0__py3-none-any.whl → 2.0.2__py3-none-any.whl

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  1. {clinicedc-2.0.0.dist-info → clinicedc-2.0.2.dist-info}/METADATA +15 -22
  2. {clinicedc-2.0.0.dist-info → clinicedc-2.0.2.dist-info}/RECORD +895 -792
  3. {clinicedc-2.0.0.dist-info → clinicedc-2.0.2.dist-info}/WHEEL +1 -1
  4. edc_action_item/action.py +13 -32
  5. edc_action_item/action_with_notification.py +1 -2
  6. edc_action_item/admin/action_item_admin.py +2 -6
  7. edc_action_item/admin_site.py +1 -3
  8. edc_action_item/auths.py +1 -3
  9. edc_action_item/create_or_update_action_type.py +1 -3
  10. edc_action_item/data_fixers.py +7 -20
  11. edc_action_item/forms/action_item_form.py +1 -3
  12. edc_action_item/management/commands/inspect_action_items.py +3 -9
  13. edc_action_item/migrations/0001_initial.py +4 -5
  14. edc_action_item/migrations/0003_auto_20180116_1528.py +2 -1
  15. edc_action_item/migrations/0006_auto_20180707_1659.py +3 -4
  16. edc_action_item/migrations/0007_auto_20180707_1715.py +1 -3
  17. edc_action_item/migrations/0008_auto_20180809_0303.py +2 -1
  18. edc_action_item/migrations/0014_auto_20181121_1738.py +2 -6
  19. edc_action_item/migrations/0015_auto_20190114_0250.py +4 -3
  20. edc_action_item/migrations/0021_auto_20190628_2113.py +1 -3
  21. edc_action_item/migrations/0022_auto_20190628_2136.py +2 -6
  22. edc_action_item/migrations/0030_edcpermissions.py +1 -1
  23. edc_action_item/migrations/0033_alter_actionitem_managers.py +1 -0
  24. edc_action_item/migrations/0034_alter_actionitem_device_created_and_more.py +13 -37
  25. edc_action_item/migrations/0038_alter_actionitem_revision_alter_actiontype_revision_and_more.py +86 -0
  26. edc_action_item/models/action_item.py +2 -6
  27. edc_action_item/models/action_model_mixin.py +5 -16
  28. edc_action_item/models/action_type.py +1 -3
  29. edc_action_item/models/reference.py +1 -2
  30. edc_action_item/models/signals.py +3 -9
  31. edc_action_item/site_action_items.py +4 -12
  32. edc_action_item/templatetags/action_item_extras.py +1 -3
  33. edc_action_item/view_utils/action_item_button.py +1 -3
  34. edc_action_item/view_utils/action_item_popover_list_item.py +1 -2
  35. edc_adherence/migrations/0002_nonadherencereasons_plural_name.py +1 -3
  36. edc_adherence/model_admin_mixin.py +1 -3
  37. edc_adverse_event/action_items/ae_followup_action.py +2 -6
  38. edc_adverse_event/action_items/ae_initial_action.py +3 -7
  39. edc_adverse_event/auth_objects.py +2 -6
  40. edc_adverse_event/constants.py +1 -3
  41. edc_adverse_event/form_validator_mixins/death_report_form_validator.py +1 -3
  42. edc_adverse_event/form_validator_mixins/requires_death_report_form_validator_mixin.py +2 -7
  43. edc_adverse_event/form_validators/hospitalization.py +1 -3
  44. edc_adverse_event/migrations/0003_auto_20191026_2231.py +3 -9
  45. edc_adverse_event/migrations/0008_auto_20220825_0451.py +1 -1
  46. edc_adverse_event/migrations/0009_auto_20220907_0157.py +1 -1
  47. edc_adverse_event/migrations/0010_auto_20220913_2139.py +4 -12
  48. edc_adverse_event/migrations/0013_alter_aeactionclassification_device_created_and_more.py +11 -31
  49. edc_adverse_event/migrations/0015_alter_aeactionclassification_revision_and_more.py +74 -0
  50. edc_adverse_event/model_mixins/ae_followup/ae_followup_fields_model_mixin.py +1 -3
  51. edc_adverse_event/model_mixins/ae_followup/ae_followup_model_mixin.py +1 -5
  52. edc_adverse_event/model_mixins/ae_initial/ae_initial_ae_model_mixin.py +1 -3
  53. edc_adverse_event/model_mixins/ae_initial/ae_initial_fields_model_mixin.py +1 -3
  54. edc_adverse_event/model_mixins/ae_initial/ae_initial_susar_model_mixin.py +1 -2
  55. edc_adverse_event/model_mixins/ae_special_interest/aesi_model_mixin.py +1 -5
  56. edc_adverse_event/model_mixins/ae_susar/ae_susar_model_mixin.py +1 -5
  57. edc_adverse_event/model_mixins/ae_tmg/ae_tmg_fields_model_mixin.py +2 -6
  58. edc_adverse_event/model_mixins/ae_tmg/ae_tmg_model_mixin.py +1 -5
  59. edc_adverse_event/model_mixins/death_report/death_report_extra_fields_model_mixin.py +1 -2
  60. edc_adverse_event/model_mixins/death_report/death_report_model_mixin.py +2 -5
  61. edc_adverse_event/model_mixins/death_report/death_report_tmg_model_mixin.py +2 -7
  62. edc_adverse_event/model_mixins/death_report/simple_death_report_model_mixin.py +1 -3
  63. edc_adverse_event/modeladmin_mixins/ae_tmg_admin_mixin.py +1 -3
  64. edc_adverse_event/modeladmin_mixins/death_report_admin_mixin.py +6 -10
  65. edc_adverse_event/modelform_mixins/ae_tmg_modelform_mixin.py +1 -3
  66. edc_adverse_event/models/signals.py +3 -9
  67. edc_adverse_event/pdf_reports/ae_pdf_report.py +6 -18
  68. edc_adverse_event/pdf_reports/death_pdf_report.py +3 -9
  69. edc_adverse_event/templatetags/edc_adverse_event_extras.py +5 -15
  70. edc_adverse_event/utils.py +2 -6
  71. edc_adverse_event/view_mixins/ae/ae_listboard_view_mixin.py +1 -3
  72. edc_adverse_event/view_mixins/ae/death_report_listboard_view_mixin.py +1 -3
  73. edc_adverse_event/view_mixins/tmg/tmg_ae_listboard_view_mixin.py +2 -6
  74. edc_adverse_event/view_utils/tmg_button.py +2 -6
  75. edc_adverse_event/views/home_view.py +1 -3
  76. edc_adverse_event/views/tmg/death_listboard_view.py +1 -3
  77. edc_adverse_event/views/tmg/home_view.py +2 -6
  78. edc_adverse_event/views/tmg/summary_listboard_view.py +1 -3
  79. edc_appconfig/apps.py +3 -2
  80. edc_appointment/admin/appointment_admin.py +1 -3
  81. edc_appointment/admin/list_filters.py +1 -3
  82. edc_appointment/admin_site.py +1 -3
  83. edc_appointment/analytics/dataframes/get_appointment_df.py +2 -6
  84. edc_appointment/appointment_reason_updater.py +2 -5
  85. edc_appointment/appointment_status_updater.py +1 -4
  86. edc_appointment/constants.py +1 -3
  87. edc_appointment/creators/appointment_creator.py +4 -10
  88. edc_appointment/creators/appointments_creator.py +3 -2
  89. edc_appointment/creators/unscheduled_appointment_creator.py +3 -7
  90. edc_appointment/creators/utils.py +4 -0
  91. edc_appointment/form_validator_mixins/next_appointment_crf_form_validator_mixin.py +3 -10
  92. edc_appointment/form_validator_mixins/window_period_form_validator_mixin.py +3 -9
  93. edc_appointment/form_validators/appointment_form_validator.py +11 -37
  94. edc_appointment/form_validators/next_appointment_crf_form_validator.py +1 -3
  95. edc_appointment/form_validators/utils.py +1 -3
  96. edc_appointment/managers.py +2 -6
  97. edc_appointment/migrations/0002_auto_20161126_1156.py +5 -8
  98. edc_appointment/migrations/0003_auto_20161127_2226.py +7 -16
  99. edc_appointment/migrations/0006_auto_20170106_2118.py +2 -1
  100. edc_appointment/migrations/0008_auto_20171115_1601.py +3 -4
  101. edc_appointment/migrations/0014_auto_20180116_1411.py +2 -1
  102. edc_appointment/migrations/0024_auto_20200911_0425.py +1 -1
  103. edc_appointment/migrations/0034_appointmenttype_alter_appointment_appt_type_and_more.py +2 -4
  104. edc_appointment/migrations/0036_auto_20230124_1822.py +2 -6
  105. edc_appointment/migrations/0040_appointment_appt_type_other_and_more.py +1 -0
  106. edc_appointment/migrations/0042_alter_appointment_device_created_and_more.py +5 -13
  107. edc_appointment/migrations/0046_infosources.py +1 -3
  108. edc_appointment/migrations/0047_alter_appointment_options_and_more.py +1 -3
  109. edc_appointment/migrations/0049_alter_appointment_revision_and_more.py +38 -0
  110. edc_appointment/model_mixins/appointment_methods_model_mixin.py +1 -5
  111. edc_appointment/model_mixins/appointment_model_mixin.py +7 -12
  112. edc_appointment/model_mixins/next_appointment_crf_model_mixin.py +1 -3
  113. edc_appointment/modeladmin_mixins/next_appointment_crf_modeladmin_mixin.py +1 -3
  114. edc_appointment/modelform_mixins/next_appointment_crf_modelform_mixins.py +1 -5
  115. edc_appointment/models/signals.py +5 -17
  116. edc_appointment/utils.py +11 -33
  117. edc_appointment/view_mixins/appointment_view_mixin.py +2 -6
  118. edc_auth/admin/list_filters.py +2 -6
  119. edc_auth/admin/role_admin.py +1 -3
  120. edc_auth/admin/user_admin.py +4 -12
  121. edc_auth/admin/user_profile_admin.py +2 -5
  122. edc_auth/auth_updater/auth_updater.py +1 -3
  123. edc_auth/forms.py +1 -3
  124. edc_auth/get_app_codenames.py +1 -3
  125. edc_auth/import_users.py +3 -9
  126. edc_auth/management/commands/export_users.py +1 -3
  127. edc_auth/management/commands/reset_password.py +1 -3
  128. edc_auth/migrations/0001_squashed_0033_alter_userprofile_is_multisite_viewer.py +4 -12
  129. edc_auth/migrations/0015_auto_20191026_2149.py +1 -3
  130. edc_auth/migrations/0016_auto_20191026_2153.py +1 -3
  131. edc_auth/migrations/0025_permissions.py +1 -1
  132. edc_auth/migrations/0029_alter_edcpermissions_device_created_and_more.py +5 -13
  133. edc_auth/migrations/0034_alter_edcpermissions_revision_alter_role_revision.py +38 -0
  134. edc_auth/models/__init__.py +1 -3
  135. edc_auth/models/signals.py +2 -6
  136. edc_auth/models/user_profile.py +1 -3
  137. edc_auth/password_setter.py +1 -3
  138. edc_auth/system_checks.py +1 -5
  139. edc_auth/urls_for_accounts.py +1 -3
  140. edc_auth/utils.py +3 -9
  141. edc_consent/actions.py +3 -9
  142. edc_consent/consent_definition.py +5 -8
  143. edc_consent/consent_definition_extension.py +4 -12
  144. edc_consent/field_mixins/citizen_fields_mixin.py +2 -4
  145. edc_consent/field_mixins/identity_fields_mixin.py +1 -2
  146. edc_consent/field_mixins/personal_fields_mixin.py +8 -3
  147. edc_consent/field_mixins/site_fields_mixin.py +1 -2
  148. edc_consent/form_validators/subject_consent_form_validator.py +4 -8
  149. edc_consent/migrations/0001_initial.py +1 -1
  150. edc_consent/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
  151. edc_consent/migrations/0005_alter_edcpermissions_revision.py +26 -0
  152. edc_consent/model_mixins/consent_extension_model_mixin.py +2 -3
  153. edc_consent/model_mixins/consent_model_mixin.py +3 -9
  154. edc_consent/modeladmin_mixins/consent_model_admin_mixin.py +7 -17
  155. edc_consent/modelform_mixins/consent_modelform_mixin/consent_modelform_validation_mixin.py +6 -10
  156. edc_consent/modelform_mixins/requires_consent_modelform_mixin.py +1 -3
  157. edc_consent/models/signals.py +3 -6
  158. edc_consent/site_consents.py +6 -17
  159. edc_consent/system_checks.py +3 -9
  160. edc_consent/validators.py +1 -2
  161. edc_consent/view_mixins/consent_view_mixins.py +3 -5
  162. edc_crf/crf_form_validator.py +4 -7
  163. edc_crf/crf_form_validator_mixins.py +2 -6
  164. edc_crf/migrations/0004_alter_crfstatus_device_created_and_more.py +3 -7
  165. edc_crf/migrations/0008_alter_crfstatus_revision.py +26 -0
  166. edc_crf/utils.py +1 -3
  167. edc_dashboard/management/commands/update_search_slugs.py +1 -3
  168. edc_dashboard/migrations/0001_initial.py +1 -1
  169. edc_dashboard/migrations/0003_alter_edcpermissions_device_created_and_more.py +3 -7
  170. edc_dashboard/migrations/0005_alter_edcpermissions_revision.py +26 -0
  171. edc_dashboard/templatetags/edc_dashboard_extras.py +2 -6
  172. edc_dashboard/view_mixins/administration_view_mixin.py +1 -3
  173. edc_dashboard/view_mixins/edc_view_mixin.py +1 -3
  174. edc_dashboard/views/administration_view.py +1 -3
  175. edc_data_manager/action_items.py +1 -3
  176. edc_data_manager/admin/actions.py +3 -9
  177. edc_data_manager/admin/data_query_admin.py +4 -12
  178. edc_data_manager/admin/query_rule_admin.py +4 -13
  179. edc_data_manager/auths.py +1 -3
  180. edc_data_manager/forms/data_query.py +2 -6
  181. edc_data_manager/forms/query_rule.py +1 -3
  182. edc_data_manager/get_longitudinal_value.py +2 -5
  183. edc_data_manager/handlers/handlers.py +2 -6
  184. edc_data_manager/migrations/0001_initial.py +4 -3
  185. edc_data_manager/migrations/0003_auto_20190806_1749.py +2 -6
  186. edc_data_manager/migrations/0004_auto_20190806_1750.py +1 -3
  187. edc_data_manager/migrations/0025_edcpermissions.py +1 -1
  188. edc_data_manager/migrations/0027_alter_dataquery_dm_user.py +1 -1
  189. edc_data_manager/migrations/0028_alter_dataquery_options_alter_queryrule_options_and_more.py +2 -1
  190. edc_data_manager/migrations/0029_alter_dataquery_managers.py +2 -1
  191. edc_data_manager/migrations/0030_alter_datadictionary_device_created_and_more.py +15 -43
  192. edc_data_manager/migrations/0039_alter_datadictionary_revision_and_more.py +101 -0
  193. edc_data_manager/models/model_mixins.py +1 -3
  194. edc_data_manager/populate_data_dictionary.py +1 -2
  195. edc_data_manager/post_migrate_signals.py +1 -3
  196. edc_data_manager/site_data_manager.py +1 -3
  197. edc_document_status/model_mixins.py +1 -3
  198. edc_egfr/__init__.py +1 -0
  199. edc_egfr/admin/__init__.py +1 -0
  200. edc_egfr/admin/egfr_drop_notification_admin_mixin.py +73 -0
  201. edc_egfr/apps.py +5 -0
  202. edc_egfr/calculators/__init__.py +4 -0
  203. edc_egfr/calculators/base_egrfr.py +56 -0
  204. edc_egfr/calculators/egfr_ckd_epi.py +68 -0
  205. edc_egfr/calculators/egfr_cockcroft_gault.py +63 -0
  206. edc_egfr/calculators/percent_change.py +7 -0
  207. edc_egfr/constants.py +1 -0
  208. edc_egfr/egfr.py +237 -0
  209. edc_egfr/form_validator_mixins/__init__.py +4 -0
  210. edc_egfr/form_validator_mixins/egfr_form_validator_mixins.py +55 -0
  211. edc_egfr/get_drop_notification_model.py +10 -0
  212. edc_egfr/get_egfr_for_subject.py +31 -0
  213. edc_egfr/model_mixins/__init__.py +2 -0
  214. edc_egfr/model_mixins/egfr_drop_notification_model_mixin.py +63 -0
  215. edc_egfr/model_mixins/egfr_model_mixin.py +120 -0
  216. edc_export/archive_exporter.py +2 -6
  217. edc_export/exportables.py +2 -6
  218. edc_export/files_emailer.py +1 -3
  219. edc_export/management/commands/import_receipts.py +1 -3
  220. edc_export/managers.py +3 -9
  221. edc_export/migrations/0001_initial.py +15 -36
  222. edc_export/migrations/0005_exportdata_importdata.py +1 -3
  223. edc_export/migrations/0006_auto_20200512_0208.py +2 -6
  224. edc_export/migrations/0010_auto_20210910_1636.py +2 -6
  225. edc_export/migrations/0013_edcpermissions.py +1 -1
  226. edc_export/migrations/0015_alter_datarequest_managers_and_more.py +2 -1
  227. edc_export/migrations/0016_alter_datarequest_device_created_and_more.py +27 -79
  228. edc_export/migrations/0017_alter_datarequest_options_and_more.py +2 -6
  229. edc_export/migrations/0020_remove_datarequesthistory_edc_export__exporte_ba8050_idx_and_more.py +2 -6
  230. edc_export/migrations/0021_alter_datarequest_revision_and_more.py +173 -0
  231. edc_export/model_exporter/model_exporter.py +4 -15
  232. edc_export/model_exporter/object_history_helpers.py +1 -3
  233. edc_export/model_exporter/value_getter.py +5 -14
  234. edc_export/models/signals.py +1 -3
  235. edc_export/models/upload_export_receipt_file.py +1 -3
  236. edc_export/utils.py +1 -4
  237. edc_export/views/export_selected_models_view.py +6 -17
  238. edc_facility/default_definitions.py +1 -3
  239. edc_facility/facility.py +4 -14
  240. edc_facility/import_holidays.py +1 -3
  241. edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py +4 -6
  242. edc_facility/migrations/0006_alter_healthfacility_health_facility_type.py +1 -1
  243. edc_facility/migrations/0008_alter_healthfacility_device_created_and_more.py +5 -13
  244. edc_facility/migrations/0015_alter_healthfacility_revision_and_more.py +38 -0
  245. edc_facility/models/holiday.py +1 -3
  246. edc_facility/utils.py +1 -3
  247. edc_fieldsets/fieldsets_modeladmin_mixin.py +1 -3
  248. edc_form_describer/form_describer.py +3 -9
  249. edc_form_describer/make_forms_reference.py +1 -3
  250. edc_form_describer/management/commands/make_forms_reference.py +1 -3
  251. edc_form_runners/admin/issue_admin.py +2 -6
  252. edc_form_runners/form_runner.py +4 -13
  253. edc_form_runners/form_runner_by_scr_id.py +1 -3
  254. edc_form_runners/get_form_runner.py +1 -3
  255. edc_form_runners/get_form_runner_by_src_id.py +3 -3
  256. edc_form_runners/management/commands/run_form_runners.py +1 -3
  257. edc_form_runners/migrations/0001_initial.py +2 -4
  258. edc_form_runners/migrations/0004_alter_issue_revision.py +26 -0
  259. edc_form_runners/run_form_runners.py +1 -3
  260. edc_form_runners/utils.py +1 -3
  261. edc_form_validators/applicable_field_validator.py +6 -17
  262. edc_form_validators/base_form_validator.py +1 -3
  263. edc_form_validators/date_range_validator.py +4 -12
  264. edc_form_validators/date_validator.py +3 -9
  265. edc_form_validators/many_to_many_field_validator.py +1 -3
  266. edc_form_validators/other_specify_field_validator.py +3 -7
  267. edc_form_validators/range_field_validator.py +1 -3
  268. edc_form_validators/required_field_validator.py +5 -18
  269. edc_glucose/__init__.py +0 -0
  270. edc_glucose/apps.py +6 -0
  271. edc_glucose/constants.py +3 -0
  272. edc_glucose/fieldsets.py +14 -0
  273. edc_glucose/form_validators/__init__.py +6 -0
  274. edc_glucose/form_validators/fasting_form_validator.py +12 -0
  275. edc_glucose/form_validators/fbg_form_validator_mixin.py +32 -0
  276. edc_glucose/form_validators/fbg_ogtt_form_validator_mixin.py +47 -0
  277. edc_glucose/form_validators/glucose_form_validator.py +44 -0
  278. edc_glucose/form_validators/glucose_form_validator_mixin.py +53 -0
  279. edc_glucose/form_validators/ogtt_form_validator_mixin.py +91 -0
  280. edc_glucose/list_filters.py +42 -0
  281. edc_glucose/migrations/__init__.py +0 -0
  282. edc_glucose/model_mixin_factories/__init__.py +4 -0
  283. edc_glucose/model_mixin_factories/fasting_model_mixin_factory.py +63 -0
  284. edc_glucose/model_mixin_factories/fbg_model_mixin_factory.py +48 -0
  285. edc_glucose/model_mixin_factories/glucose_model_mixin_factory.py +49 -0
  286. edc_glucose/model_mixin_factories/ogtt_model_mixin_factory.py +71 -0
  287. edc_glucose/model_mixins/__init__.py +5 -0
  288. edc_glucose/model_mixins/fasting_model_mixin.py +15 -0
  289. edc_glucose/model_mixins/fbg_model_mixin.py +10 -0
  290. edc_glucose/model_mixins/glucose_model_mixin.py +17 -0
  291. edc_glucose/model_mixins/hba1c_model_mixin.py +42 -0
  292. edc_glucose/model_mixins/ogtt_model_mixin.py +10 -0
  293. edc_glucose/models.py +0 -0
  294. edc_glucose/utils.py +42 -0
  295. edc_identifier/admin_site.py +1 -3
  296. edc_identifier/identifier.py +1 -3
  297. edc_identifier/migrations/0001_initial.py +3 -4
  298. edc_identifier/migrations/0001_squashed_0018_auto_20180128_1054.py +3 -2
  299. edc_identifier/migrations/0005_alter_identifiermodel_managers.py +2 -1
  300. edc_identifier/migrations/0005_historicalidentifierhistory_historicalidentifiertracker_historicalsubjectidentifier.py +4 -5
  301. edc_identifier/migrations/0006_auto_20161127_2226.py +16 -43
  302. edc_identifier/migrations/0007_alter_identifiermodel_device_created_and_more.py +3 -7
  303. edc_identifier/migrations/0007_auto_20161204_2227.py +4 -7
  304. edc_identifier/migrations/0009_auto_20161221_2323.py +1 -0
  305. edc_identifier/migrations/0010_alter_identifiermodel_revision.py +26 -0
  306. edc_identifier/migrations/0010_auto_20170112_0602.py +2 -1
  307. edc_identifier/migrations/0012_auto_20171116_1606.py +2 -1
  308. edc_identifier/migrations/0013_auto_20171230_1316.py +3 -9
  309. edc_identifier/research_identifier.py +3 -11
  310. edc_identifier/short_identifier.py +5 -9
  311. edc_identifier/utils.py +1 -3
  312. edc_lab/admin/modeladmin_mixins.py +2 -8
  313. edc_lab/aliquot_types.py +1 -3
  314. edc_lab/form_validators/requisition_form_validator_mixin.py +1 -3
  315. edc_lab/forms/box_type_form.py +4 -6
  316. edc_lab/lab/aliquot_type.py +2 -6
  317. edc_lab/lab/manifest.py +2 -6
  318. edc_lab/lab/primary_aliquot.py +1 -3
  319. edc_lab/lab/requisition_panel.py +1 -3
  320. edc_lab/lab/requisition_panel_group.py +2 -6
  321. edc_lab/lab/specimen.py +1 -3
  322. edc_lab/labels/aliquot_label.py +4 -6
  323. edc_lab/labels/manifest_label.py +1 -3
  324. edc_lab/migrations/0001_initial.py +12 -29
  325. edc_lab/migrations/0002_auto_20170305_1939.py +4 -12
  326. edc_lab/migrations/0007_auto_20170321_1119.py +2 -6
  327. edc_lab/migrations/0008_auto_20170921_0719.py +2 -1
  328. edc_lab/migrations/0010_auto_20171127_1541.py +3 -2
  329. edc_lab/migrations/0012_auto_20180114_1438.py +2 -1
  330. edc_lab/migrations/0013_auto_20180117_1438.py +2 -1
  331. edc_lab/migrations/0022_auto_20211210_1839.py +1 -0
  332. edc_lab/migrations/0024_alter_manifestitem_managers.py +2 -1
  333. edc_lab/migrations/0027_alter_aliquot_managers_alter_box_managers_and_more.py +1 -1
  334. edc_lab/migrations/0028_alter_aliquot_device_created_and_more.py +43 -127
  335. edc_lab/migrations/0035_alter_aliquot_revision_alter_box_revision_and_more.py +266 -0
  336. edc_lab/model_mixins/aliquot/aliquot_label_mixin.py +1 -3
  337. edc_lab/model_mixins/aliquot/aliquot_model_mixin.py +4 -12
  338. edc_lab/model_mixins/requisition/requisition_identifier_mixin.py +1 -3
  339. edc_lab/model_mixins/shipping/manifest_model_mixin.py +1 -3
  340. edc_lab/models/box_item.py +1 -3
  341. edc_lab/models/box_type.py +1 -3
  342. edc_lab/models/manifest/manifest.py +3 -9
  343. edc_lab/models/manifest/manifest_item.py +1 -3
  344. edc_lab/models/order.py +1 -3
  345. edc_lab/models/signals.py +1 -3
  346. edc_lab/patterns.py +1 -3
  347. edc_lab/pdf_reports/manifest_pdf_report.py +9 -27
  348. edc_lab/post_migrate_signals.py +1 -3
  349. edc_lab/site_labs.py +4 -10
  350. edc_lab_dashboard/migrations/0001_initial.py +1 -1
  351. edc_lab_dashboard/migrations/0002_alter_edcpermissions_device_created_and_more.py +3 -7
  352. edc_lab_dashboard/migrations/0004_alter_edcpermissions_revision.py +26 -0
  353. edc_lab_dashboard/view_mixins/box_view_mixin.py +1 -3
  354. edc_lab_dashboard/view_mixins/manifest_view_mixin.py +4 -12
  355. edc_lab_dashboard/views/action_views/receive_view.py +1 -3
  356. edc_lab_dashboard/views/action_views/verify_box_item_view.py +1 -3
  357. edc_lab_dashboard/views/listboard_filters/aliquot_listboard_view_filters.py +2 -6
  358. edc_lab_dashboard/views/listboard_filters/manifest_listboard_filters.py +1 -3
  359. edc_lab_dashboard/views/listboard_views/base_box_item_listboard_view.py +1 -3
  360. edc_lab_dashboard/views/listboard_views/manifest_listboard_view.py +1 -3
  361. edc_lab_dashboard/views/listboard_views/process_listboard_view.py +2 -6
  362. edc_lab_dashboard/views/listboard_views/receive_listboard_view.py +2 -6
  363. edc_lab_dashboard/views/listboard_views/requisition_listboard_view.py +2 -6
  364. edc_lab_results/action_items.py +1 -3
  365. edc_lab_results/form_validator_mixins/blood_results_fbg_form_validator_mixin.py +2 -4
  366. edc_lab_results/form_validator_mixins/blood_results_form_validator_mixin.py +1 -3
  367. edc_lab_results/get_summary.py +3 -5
  368. edc_lab_results/model_mixin_factories/__init__.py +10 -0
  369. edc_lab_results/{model_mixin_factory → model_mixin_factories}/field_attrs.py +8 -8
  370. edc_lab_results/{model_mixin_factory → model_mixin_factories}/reportable_result_model_mixin_factory.py +2 -0
  371. edc_lab_results/{model_mixin_factory → model_mixin_factories}/result_model_mixin_factory.py +2 -0
  372. edc_lab_results/model_mixins/blood_result_model_mixin.py +2 -5
  373. edc_lab_results/model_mixins/electrolytes_model_mixins.py +1 -1
  374. edc_lab_results/model_mixins/fbc_model_mixins.py +1 -1
  375. edc_lab_results/model_mixins/fbg_model_mixin.py +6 -3
  376. edc_lab_results/model_mixins/glucose_model_mixin.py +2 -2
  377. edc_lab_results/model_mixins/hba1c_model_mixin.py +2 -28
  378. edc_lab_results/model_mixins/insulin_model_mixin.py +5 -11
  379. edc_lab_results/model_mixins/lft_model_mixins.py +1 -1
  380. edc_lab_results/model_mixins/lipid_model_mixins.py +1 -1
  381. edc_lab_results/model_mixins/proteinuria_model_mixin.py +1 -1
  382. edc_lab_results/model_mixins/rft_model_mixins.py +1 -1
  383. edc_label/apps.py +1 -2
  384. edc_label/migrations/0001_initial.py +1 -1
  385. edc_label/migrations/0003_alter_zpllabeltemplates_device_created_and_more.py +3 -7
  386. edc_label/migrations/0006_alter_zpllabeltemplates_revision.py +29 -0
  387. edc_label/printer.py +2 -6
  388. edc_label/printers_mixin.py +1 -3
  389. edc_label/urls.py +1 -3
  390. edc_label/view_mixins.py +1 -3
  391. edc_label/views/print_label_view.py +1 -3
  392. edc_list_data/model_mixins.py +1 -3
  393. edc_list_data/preload_data.py +2 -6
  394. edc_list_data/site_list_data.py +1 -3
  395. edc_listboard/migrations/0001_initial.py +1 -1
  396. edc_listboard/migrations/0003_alter_listboard_device_created_and_more.py +3 -7
  397. edc_listboard/migrations/0006_alter_listboard_revision.py +29 -0
  398. edc_listboard/view_mixins/listboard_filter_view_mixin.py +5 -15
  399. edc_listboard/view_mixins/search_listboard_view_mixin.py +2 -6
  400. edc_listboard/views/listboard_view.py +2 -6
  401. edc_listboard/views/screen/screening_listboard_view.py +1 -3
  402. edc_listboard/views/subject/subject_listboard_view.py +1 -3
  403. edc_locator/forms/subject_locator_form_validator.py +4 -12
  404. edc_locator/migrations/0001_initial.py +3 -2
  405. edc_locator/migrations/0003_auto_20180103_1351.py +2 -1
  406. edc_locator/migrations/0004_auto_20180106_2148.py +2 -1
  407. edc_locator/migrations/0007_auto_20180117_1819.py +2 -1
  408. edc_locator/migrations/0011_auto_20181007_0053.py +1 -1
  409. edc_locator/migrations/0013_auto_20181007_0054.py +2 -3
  410. edc_locator/migrations/0014_auto_20181009_0545.py +1 -0
  411. edc_locator/migrations/0032_alter_subjectlocator_managers.py +1 -1
  412. edc_locator/migrations/0034_alter_historicalsubjectlocator_device_created_and_more.py +5 -13
  413. edc_locator/migrations/0039_alter_historicalsubjectlocator_revision_and_more.py +38 -0
  414. edc_locator/modeladmin_mixins.py +1 -3
  415. edc_locator/view_mixins/subject_locator_view_mixins.py +1 -3
  416. edc_ltfu/admin.py +1 -3
  417. edc_ltfu/forms/ltfu_form.py +1 -3
  418. edc_ltfu/forms/ltfu_form_validator_mixin.py +1 -2
  419. edc_ltfu/modelform_mixins.py +3 -8
  420. edc_metadata/admin/modeladmin_mixins.py +2 -8
  421. edc_metadata/management/commands/validate_entry_status.py +1 -3
  422. edc_metadata/metadata/metadata.py +12 -41
  423. edc_metadata/metadata/metadata_getter.py +2 -9
  424. edc_metadata/metadata/requisition_metadata_getter.py +1 -3
  425. edc_metadata/metadata_handler.py +3 -9
  426. edc_metadata/metadata_helper/metadata_helper_mixin.py +1 -3
  427. edc_metadata/metadata_mixins/source_model_metadata_mixin.py +3 -9
  428. edc_metadata/metadata_refresher.py +3 -9
  429. edc_metadata/metadata_rules/crf/crf_rule_group.py +2 -5
  430. edc_metadata/metadata_rules/persistant_singleton_mixin.py +3 -3
  431. edc_metadata/metadata_rules/requisition/requisition_rule_group.py +1 -2
  432. edc_metadata/metadata_rules/rule_evaluator.py +1 -3
  433. edc_metadata/metadata_rules/rule_group.py +2 -6
  434. edc_metadata/metadata_rules/rule_group_meta_options.py +1 -3
  435. edc_metadata/metadata_updater.py +1 -3
  436. edc_metadata/metadata_wrappers/metadata_wrapper.py +1 -3
  437. edc_metadata/migrations/0001_initial.py +2 -1
  438. edc_metadata/migrations/0002_auto_20161127_2226.py +6 -13
  439. edc_metadata/migrations/0005_auto_20170112_0602.py +2 -1
  440. edc_metadata/migrations/0007_auto_20170810_1032.py +2 -1
  441. edc_metadata/migrations/0009_auto_20180116_1528.py +2 -1
  442. edc_metadata/migrations/0014_auto_20190707_0002.py +1 -1
  443. edc_metadata/migrations/0015_auto_20190709_0009.py +3 -5
  444. edc_metadata/migrations/0021_alter_crfmetadata_managers_and_more.py +1 -1
  445. edc_metadata/migrations/0023_alter_crfmetadata_device_created_and_more.py +5 -13
  446. edc_metadata/migrations/0030_alter_crfmetadata_revision_and_more.py +38 -0
  447. edc_metadata/model_mixins/creates/creates_metadata_model_mixin.py +1 -3
  448. edc_metadata/model_mixins/updates/updates_metadata_model_mixin.py +1 -3
  449. edc_metadata/models/crf_metadata_model_mixin.py +2 -6
  450. edc_metadata/next_form_getter.py +1 -3
  451. edc_metadata/requisition/requisition_metadata_handler.py +3 -2
  452. edc_metadata/requisition/requisition_metadata_updater.py +1 -3
  453. edc_metadata/update_metadata_on_schedule_change.py +7 -14
  454. edc_model/models/fields/initials_field.py +1 -3
  455. edc_model/models/signals.py +1 -3
  456. edc_model/system_checks.py +1 -3
  457. edc_model/validators/duration.py +1 -3
  458. edc_model_admin/admin_site.py +1 -3
  459. edc_model_admin/changelist_buttons/model_admin_changelist_button_mixin.py +4 -12
  460. edc_model_admin/changelist_buttons/model_admin_changelist_model_button_mixin.py +1 -3
  461. edc_model_admin/dashboard/model_admin_crf_dashboard_mixin.py +1 -3
  462. edc_model_admin/dashboard/model_admin_dashboard_mixin.py +1 -3
  463. edc_model_admin/mixins/base_model_admin_redirect_mixin.py +2 -6
  464. edc_model_admin/mixins/inlines/limited_admin_inline_mixin.py +1 -3
  465. edc_model_admin/mixins/model_admin_bypass_default_form_cls_mixin.py +4 -12
  466. edc_model_admin/mixins/model_admin_form_auto_number_mixin.py +2 -6
  467. edc_model_admin/mixins/model_admin_form_instructions_mixin.py +2 -6
  468. edc_model_admin/mixins/model_admin_next_url_redirect_mixin.py +3 -9
  469. edc_model_admin/mixins/model_admin_protect_pii_mixin.py +1 -3
  470. edc_model_admin/mixins/model_admin_redirect_all_to_changelist_mixin.py +2 -6
  471. edc_model_admin/mixins/model_admin_redirect_on_delete_mixin.py +1 -3
  472. edc_model_admin/templatetags/edc_admin_modify.py +3 -9
  473. edc_model_fields/fields/initials_field.py +1 -3
  474. edc_model_form/mixins/inline_model_form_mixin.py +5 -9
  475. edc_model_to_dataframe/model_to_dataframe.py +15 -46
  476. edc_navbar/get_default_navbar.py +1 -3
  477. edc_navbar/migrations/0004_auto_20220825_0451.py +1 -1
  478. edc_navbar/migrations/0006_alter_edcpermissions_device_created_and_more.py +3 -7
  479. edc_navbar/migrations/0008_alter_edcpermissions_revision.py +26 -0
  480. edc_navbar/navbar.py +1 -3
  481. edc_navbar/navbar_item.py +1 -3
  482. edc_navbar/site_navbars.py +2 -6
  483. edc_navbar/templatetags/edc_navbar_extras.py +1 -3
  484. edc_notification/admin_site.py +1 -3
  485. edc_notification/mailing_list_manager.py +5 -15
  486. edc_notification/migrations/0001_initial.py +2 -1
  487. edc_notification/migrations/0008_alter_notification_device_created_and_more.py +3 -7
  488. edc_notification/migrations/0010_alter_notification_revision.py +26 -0
  489. edc_notification/modeladmin_mixins.py +1 -3
  490. edc_notification/models/notification.py +1 -3
  491. edc_notification/models/signals.py +3 -10
  492. edc_notification/notification/model_notification.py +3 -9
  493. edc_notification/notification/notification.py +4 -12
  494. edc_notification/site_notifications.py +5 -14
  495. edc_offstudy/migrations/0001_initial.py +2 -1
  496. edc_offstudy/migrations/0002_auto_20180921_0434.py +4 -3
  497. edc_offstudy/migrations/0008_auto_20191102_0033.py +2 -1
  498. edc_offstudy/migrations/0015_auto_20220925_0032.py +1 -1
  499. edc_offstudy/migrations/0016_auto_20220929_1742.py +1 -0
  500. edc_offstudy/migrations/0018_alter_subjectoffstudy_managers.py +2 -1
  501. edc_offstudy/migrations/0019_alter_historicalsubjectoffstudy_device_created_and_more.py +5 -13
  502. edc_offstudy/migrations/0022_alter_historicalsubjectoffstudy_revision_and_more.py +41 -0
  503. edc_offstudy/model_mixins/offstudy_model_mixin.py +3 -3
  504. edc_offstudy/modelform_mixins/crf/offstudy_crf_modelform_mixin.py +2 -6
  505. edc_offstudy/templatetags/edc_offstudy_extras.py +2 -6
  506. edc_offstudy/utils.py +1 -3
  507. edc_pdf_reports/admin/modeladmin_mixins.py +1 -3
  508. edc_pdf_reports/crf_pdf_report.py +3 -9
  509. edc_pdf_reports/flowables/textbox.py +1 -3
  510. edc_pdf_reports/report.py +6 -18
  511. edc_pdf_reports/utils.py +1 -3
  512. edc_pdf_reports/views/pdf_intermediate_view.py +1 -3
  513. edc_pdf_reports/views/print_pdf_report_view.py +2 -6
  514. edc_pdutils/actions.py +4 -12
  515. edc_pdutils/choices.py +1 -4
  516. edc_pdutils/database.py +1 -3
  517. edc_pdutils/df_exporters/csv_crf_inline_tables_exporter.py +4 -12
  518. edc_pdutils/df_exporters/csv_exporter.py +7 -22
  519. edc_pdutils/df_handlers/crf_df_handler.py +3 -9
  520. edc_pdutils/df_handlers/df_handler.py +1 -3
  521. edc_pdutils/df_handlers/registered_subject_df_handler.py +1 -3
  522. edc_pdutils/management/commands/export_models.py +2 -6
  523. edc_pdutils/migrations/0001_initial.py +6 -9
  524. edc_pdutils/site.py +2 -6
  525. edc_pdutils/site_values_mappings.py +3 -9
  526. edc_pdutils/tables/aliquot.py +2 -9
  527. edc_pdutils/tables/consent.py +2 -6
  528. edc_pdutils/tables/crf.py +4 -12
  529. edc_pdutils/tables/requisition.py +4 -12
  530. edc_pdutils/tables/visit.py +1 -3
  531. edc_pdutils/utils/convert_dates_from_model.py +3 -9
  532. edc_pdutils/utils/convert_numerics_from_model.py +1 -3
  533. edc_pdutils/utils/convert_timedelta_from_model.py +1 -3
  534. edc_pdutils/utils/missing_subject_identifiers.py +1 -3
  535. edc_pharmacy/admin/actions/confirm_stock.py +2 -6
  536. edc_pharmacy/admin/actions/delete_order_items.py +1 -3
  537. edc_pharmacy/admin/actions/delete_receive_items.py +1 -3
  538. edc_pharmacy/admin/actions/print_stock_report.py +1 -3
  539. edc_pharmacy/admin/list_filters.py +5 -17
  540. edc_pharmacy/admin/model_admin_mixin.py +1 -3
  541. edc_pharmacy/admin/prescription/rx_admin.py +2 -6
  542. edc_pharmacy/admin/prescription/rx_refill_admin.py +1 -3
  543. edc_pharmacy/admin/reports/stock_availability_admin.py +1 -5
  544. edc_pharmacy/admin/stock/allocation_admin.py +5 -15
  545. edc_pharmacy/admin/stock/allocation_proxy_admin.py +1 -3
  546. edc_pharmacy/admin/stock/confirmation_admin.py +1 -3
  547. edc_pharmacy/admin/stock/confirmation_at_site_admin.py +4 -12
  548. edc_pharmacy/admin/stock/confirmation_at_site_item_admin.py +5 -17
  549. edc_pharmacy/admin/stock/dispense_admin.py +3 -11
  550. edc_pharmacy/admin/stock/dispense_item_admin.py +4 -14
  551. edc_pharmacy/admin/stock/order_admin.py +1 -3
  552. edc_pharmacy/admin/stock/order_item_admin.py +5 -15
  553. edc_pharmacy/admin/stock/receive_admin.py +4 -12
  554. edc_pharmacy/admin/stock/receive_item_admin.py +4 -12
  555. edc_pharmacy/admin/stock/repack_request_admin.py +2 -6
  556. edc_pharmacy/admin/stock/stock_adjustment_admin.py +1 -3
  557. edc_pharmacy/admin/stock/stock_admin.py +8 -24
  558. edc_pharmacy/admin/stock/stock_proxy_admin.py +1 -5
  559. edc_pharmacy/admin/stock/stock_request_admin.py +5 -4
  560. edc_pharmacy/admin/stock/stock_request_item_admin.py +10 -19
  561. edc_pharmacy/admin/stock/stock_transfer_admin.py +4 -12
  562. edc_pharmacy/admin/stock/stock_transfer_item_admin.py +6 -18
  563. edc_pharmacy/admin/stock/storage_bin_admin.py +3 -11
  564. edc_pharmacy/admin/stock/storage_bin_item_admin.py +4 -14
  565. edc_pharmacy/analytics/dataframes/get_next_scheduled_visit_for_subjects_df.py +1 -1
  566. edc_pharmacy/analytics/dataframes/in_stock_for_subjects_df.py +2 -6
  567. edc_pharmacy/analytics/dataframes/stock_for_subjects.py +1 -3
  568. edc_pharmacy/form_validators/crf/study_medication_form_validator.py +9 -27
  569. edc_pharmacy/forms/stock/container_form.py +2 -6
  570. edc_pharmacy/forms/stock/receive_item_form.py +2 -6
  571. edc_pharmacy/forms/stock/repack_request_form.py +4 -11
  572. edc_pharmacy/forms/stock/stock_request_form.py +1 -0
  573. edc_pharmacy/forms/stock/stock_request_item_form.py +1 -3
  574. edc_pharmacy/labels/draw_bulk_stock_label_code128.py +1 -3
  575. edc_pharmacy/labels/draw_bulk_stock_label_code39.py +3 -9
  576. edc_pharmacy/labels/draw_patient_stock_label_code128.py +1 -3
  577. edc_pharmacy/migrations/0001_initial.py +7 -15
  578. edc_pharmacy/migrations/0005_alter_rx_managers.py +2 -1
  579. edc_pharmacy/migrations/0015_auto_20220913_2139.py +9 -22
  580. edc_pharmacy/migrations/0016_auto_20220929_1742.py +2 -1
  581. edc_pharmacy/migrations/0018_alter_rxrefill_managers.py +1 -1
  582. edc_pharmacy/migrations/0020_alter_box_device_created_alter_box_device_modified_and_more.py +71 -211
  583. edc_pharmacy/migrations/0021_alter_box_options_alter_container_options_and_more.py +1 -1
  584. edc_pharmacy/migrations/0023_remove_rx_edc_pharmac_modifie_986021_idx_and_more.py +1 -3
  585. edc_pharmacy/migrations/0024_allocation_assignment_containerunits_dispense_and_more.py +40 -104
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  876. edc_vitals/form_validators/__init__.py +5 -0
  877. edc_vitals/form_validators/blood_pressure_form_validator_mixin.py +40 -0
  878. edc_vitals/form_validators/bmi_form_validator_mixin.py +19 -0
  879. edc_vitals/form_validators/weight_height_with_bmi_form_validator_mixin.py +13 -0
  880. edc_vitals/migrations/__init__.py +0 -0
  881. edc_vitals/model_mixins/__init__.py +5 -0
  882. edc_vitals/model_mixins/blood_pressure_model_mixin.py +80 -0
  883. edc_vitals/model_mixins/weight_height_bmi_model_mixin.py +42 -0
  884. edc_vitals/models/__init__.py +10 -0
  885. edc_vitals/models/fields/__init__.py +7 -0
  886. edc_vitals/models/fields/blood_pressure.py +36 -0
  887. edc_vitals/models/fields/heart_rate.py +22 -0
  888. edc_vitals/models/fields/height.py +26 -0
  889. edc_vitals/models/fields/respiratory_rate.py +22 -0
  890. edc_vitals/models/fields/temperature.py +26 -0
  891. edc_vitals/models/fields/waist_circumference.py +23 -0
  892. edc_vitals/models/fields/weight.py +26 -0
  893. edc_vitals/utils.py +51 -0
  894. edc_vitals/validators.py +5 -0
  895. edc_lab_results/model_mixin_factory/__init__.py +0 -2
  896. {clinicedc-2.0.0.dist-info → clinicedc-2.0.2.dist-info}/licenses/LICENSE +0 -0
@@ -1,12 +1,12 @@
1
1
  # Generated by Django 3.2.13 on 2022-08-25 01:51
2
2
 
3
3
  import _socket
4
- from django.db import migrations, models
5
4
  import django_audit_fields.fields.hostname_modification_field
6
5
  import django_audit_fields.fields.userfield
7
6
  import django_audit_fields.fields.uuid_auto_field
8
7
  import django_audit_fields.models.audit_model_mixin
9
8
  import django_revision.revision_field
9
+ from django.db import migrations, models
10
10
 
11
11
 
12
12
  class Migration(migrations.Migration):
@@ -1,8 +1,8 @@
1
1
  # Generated by Django 4.2.4 on 2023-08-23 01:13
2
2
 
3
3
  import _socket
4
- from django.db import migrations, models
5
4
  import django_audit_fields.fields.hostname_modification_field
5
+ from django.db import migrations, models
6
6
 
7
7
 
8
8
  class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
14
14
  migrations.AlterField(
15
15
  model_name="edcpermissions",
16
16
  name="device_created",
17
- field=models.CharField(
18
- blank=True, max_length=10, verbose_name="Device created"
19
- ),
17
+ field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
20
18
  ),
21
19
  migrations.AlterField(
22
20
  model_name="edcpermissions",
23
21
  name="device_modified",
24
- field=models.CharField(
25
- blank=True, max_length=10, verbose_name="Device modified"
26
- ),
22
+ field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
27
23
  ),
28
24
  migrations.AlterField(
29
25
  model_name="edcpermissions",
@@ -0,0 +1,26 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
2
+
3
+ import django_revision.revision_field
4
+ from django.db import migrations
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_screening", "0003_alter_edcpermissions_options_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
15
+ model_name="edcpermissions",
16
+ name="revision",
17
+ field=django_revision.revision_field.RevisionField(
18
+ blank=True,
19
+ editable=False,
20
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
21
+ max_length=75,
22
+ null=True,
23
+ verbose_name="Revision",
24
+ ),
25
+ ),
26
+ ]
@@ -51,9 +51,7 @@ class EligibilityModelMixin(EligibilityFieldsModelMixin, models.Model):
51
51
  if not self.id:
52
52
  self.screening_identifier = self.identifier_cls().identifier
53
53
  if self.eligible:
54
- self.eligibility_datetime = (
55
- self.get_report_datetime_for_eligibility_datetime()
56
- )
54
+ self.eligibility_datetime = self.get_report_datetime_for_eligibility_datetime()
57
55
  self.real_eligibility_datetime = get_utcnow()
58
56
  else:
59
57
  self.eligibility_datetime = None
@@ -54,6 +54,8 @@ class ScreeningFieldsModeMixin(SiteModelMixin, models.Model):
54
54
  validators=[MinValueValidator(0), MaxValueValidator(110)]
55
55
  )
56
56
 
57
+ ethnicity = models.CharField(max_length=25, null=True, blank=True)
58
+
57
59
  consent_ability = models.CharField(
58
60
  verbose_name="Participant or legal guardian/representative able and "
59
61
  "willing to give informed consent.",
@@ -34,9 +34,7 @@ class AlreadyConsentedFormMixin:
34
34
  kwargs={"subject_identifier": self.instance.subject_identifier},
35
35
  )
36
36
 
37
- def already_consented_validation_message(
38
- self, cleaned_data: dict | None = None
39
- ) -> str:
37
+ def already_consented_validation_message(self, cleaned_data: dict | None = None) -> str:
40
38
  return format_html(
41
39
  'Not allowed. Subject has already consented. See subject <A href="{}">{}</A>',
42
40
  self.already_consented_validation_url(cleaned_data),
@@ -6,6 +6,7 @@ from django.utils.html import format_html
6
6
  from django.utils.safestring import mark_safe
7
7
 
8
8
  from edc_constants.constants import NO, PENDING, TBD, YES
9
+
9
10
  from .exceptions import (
10
11
  ScreeningEligibilityAttributeError,
11
12
  ScreeningEligibilityError,
edc_search/search_slug.py CHANGED
@@ -20,9 +20,7 @@ if TYPE_CHECKING:
20
20
 
21
21
 
22
22
  class SearchSlug:
23
- def __init__(
24
- self, obj: Model | SearchSlugModelMixin = None, fields: list[str] = None
25
- ):
23
+ def __init__(self, obj: Model | SearchSlugModelMixin = None, fields: list[str] = None):
26
24
  self.warning = None
27
25
  self.slug = ""
28
26
  self.model_cls = None
@@ -49,8 +47,6 @@ class SearchSlug:
49
47
  from django_crypto_fields.fields import BaseField
50
48
 
51
49
  encrypted_fields = [
52
- fld.name
53
- for fld in self.model_cls._meta.fields
54
- if isinstance(fld, BaseField)
50
+ fld.name for fld in self.model_cls._meta.fields if isinstance(fld, BaseField)
55
51
  ]
56
52
  return [f for f in fields if f not in encrypted_fields]
edc_search/updater.py CHANGED
@@ -20,13 +20,10 @@ class SearchSlugDuplicateFields(Exception):
20
20
  class SearchSlugUpdater:
21
21
  search_slug_cls = SearchSlug
22
22
 
23
- def __init__(
24
- self, fields: list[str], model_obj: Model | SearchSlugModelMixin = None
25
- ):
23
+ def __init__(self, fields: list[str], model_obj: Model | SearchSlugModelMixin = None):
26
24
  if len(fields) > len(list(set(fields))):
27
25
  raise SearchSlugDuplicateFields(
28
- f"Duplicate search slug fields detected. Got {fields}. "
29
- f"See {repr(self)}"
26
+ f"Duplicate search slug fields detected. Got {fields}. " f"See {repr(self)}"
30
27
  )
31
28
  search_slug = self.search_slug_cls(obj=model_obj, fields=fields)
32
29
  self.warning = search_slug.warning
@@ -42,9 +42,7 @@ class SiteModelAdminMixin:
42
42
  """
43
43
  if self.has_viewallsites_permission(request):
44
44
  return [
45
- s.id
46
- for s in request.user.userprofile.sites.all()
47
- if s.id != request.site.id
45
+ s.id for s in request.user.userprofile.sites.all() if s.id != request.site.id
48
46
  ]
49
47
  return sites.get_view_only_site_ids_for_user(request=request)
50
48
 
@@ -108,9 +106,7 @@ class SiteModelAdminMixin:
108
106
  def get_queryset(self, request) -> QuerySet:
109
107
  """Limit modeladmin queryset for the current site only"""
110
108
  qs = super().get_queryset(request)
111
- site_ids = [request.site.id] + self.get_view_only_site_ids_for_user(
112
- request=request
113
- )
109
+ site_ids = [request.site.id] + self.get_view_only_site_ids_for_user(request=request)
114
110
  try:
115
111
  qs = qs.select_related("site").filter(site_id__in=site_ids)
116
112
  except FieldError:
@@ -131,9 +127,7 @@ class SiteModelAdminMixin:
131
127
  """Use site id to select languages to show in choices."""
132
128
  if db_field.name == self.language_db_field_name:
133
129
  try:
134
- language_choices = sites.get_language_choices_tuple(
135
- request.site, other=True
136
- )
130
+ language_choices = sites.get_language_choices_tuple(request.site, other=True)
137
131
  except AttributeError as e:
138
132
  if "WSGIRequest" not in str(e):
139
133
  raise
@@ -210,9 +204,7 @@ class SiteModelAdminMixin:
210
204
  orig = []
211
205
  for field_list in field_lists:
212
206
  orig.extend(field_list or [])
213
- if dups := [
214
- item for item, count in collections.Counter(orig).items() if count > 1
215
- ]:
207
+ if dups := [item for item, count in collections.Counter(orig).items() if count > 1]:
216
208
  raise SiteModeAdminMixinError(
217
209
  f"Related field appears in more than one list. Got {dups}."
218
210
  )
@@ -75,7 +75,5 @@ class Command(BaseCommand):
75
75
  style.ERROR(f" {single_site.domain}: <not found>. Got {e}\n")
76
76
  )
77
77
  else:
78
- sys.stdout.write(
79
- f" {single_site.domain}: {host} {style.SUCCESS('OK')}\n"
80
- )
78
+ sys.stdout.write(f" {single_site.domain}: {host} {style.SUCCESS('OK')}\n")
81
79
  sys.stdout.write("Done \n")
@@ -1,12 +1,12 @@
1
1
  # Generated by Django 4.2.7 on 2023-12-07 01:01
2
2
 
3
3
  import _socket
4
- from django.db import migrations, models
5
4
  import django_audit_fields.fields.hostname_modification_field
6
5
  import django_audit_fields.fields.userfield
7
6
  import django_audit_fields.fields.uuid_auto_field
8
7
  import django_audit_fields.models.audit_model_mixin
9
8
  import django_revision.revision_field
9
+ from django.db import migrations, models
10
10
 
11
11
 
12
12
  class Migration(migrations.Migration):
@@ -82,9 +82,7 @@ class Migration(migrations.Migration):
82
82
  ),
83
83
  (
84
84
  "device_created",
85
- models.CharField(
86
- blank=True, max_length=10, verbose_name="Device created"
87
- ),
85
+ models.CharField(blank=True, max_length=10, verbose_name="Device created"),
88
86
  ),
89
87
  (
90
88
  "device_modified",
@@ -0,0 +1,26 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
2
+
3
+ import django_revision.revision_field
4
+ from django.db import migrations
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_sites", "0008_delete_edcsite_remove_siteprofile_description"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
15
+ model_name="edcpermissions",
16
+ name="revision",
17
+ field=django_revision.revision_field.RevisionField(
18
+ blank=True,
19
+ editable=False,
20
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
21
+ max_length=75,
22
+ null=True,
23
+ verbose_name="Revision",
24
+ ),
25
+ ),
26
+ ]
@@ -8,9 +8,7 @@ class SiteLanguagesError(Exception):
8
8
  def get_languages(language_codes: list[str], site_id: int) -> dict[str, str]:
9
9
  defined_languages = get_languages_from_settings()
10
10
  if language_codes:
11
- if unknown_language_codes := [
12
- c for c in language_codes if c not in defined_languages
13
- ]:
11
+ if unknown_language_codes := [c for c in language_codes if c not in defined_languages]:
14
12
  raise SiteLanguagesError(
15
13
  "Unknown language code(s) associated with site. Language code must be "
16
14
  "defined in settings.LANGUAGES. "
@@ -1,6 +1,6 @@
1
1
  from __future__ import annotations
2
2
 
3
- from dataclasses import dataclass, field, KW_ONLY
3
+ from dataclasses import KW_ONLY, dataclass, field
4
4
 
5
5
  from .get_languages import get_languages
6
6
 
edc_sites/site.py CHANGED
@@ -3,7 +3,7 @@ from __future__ import annotations
3
3
  import dataclasses
4
4
  import sys
5
5
  from copy import deepcopy
6
- from typing import Any, TYPE_CHECKING
6
+ from typing import TYPE_CHECKING, Any
7
7
 
8
8
  from django.apps import apps as django_apps
9
9
  from django.conf import settings
@@ -16,6 +16,7 @@ from django.utils.module_loading import import_module, module_has_submodule
16
16
  from edc_auth.utils import user_has_change_perms
17
17
  from edc_constants.constants import OTHER
18
18
  from edc_model_admin.utils import add_to_messages_once
19
+
19
20
  from .exceptions import InvalidSiteForUser
20
21
  from .single_site import SingleSite
21
22
  from .utils import (
@@ -159,9 +160,7 @@ class Sites:
159
160
  single_site = dataclasses.replace(single_site, domain=domain)
160
161
 
161
162
  if single_site.site_id in self._registry:
162
- raise AlreadyRegistered(
163
- f"Site already registered. Got `{single_site}`."
164
- )
163
+ raise AlreadyRegistered(f"Site already registered. Got `{single_site}`.")
165
164
  elif single_site.name in [s.name for s in self._registry.values()]:
166
165
  raise AlreadyRegisteredName(
167
166
  f"Site with this name is already registered. Got `{single_site}`."
@@ -199,9 +198,7 @@ class Sites:
199
198
  return single_site
200
199
  raise SiteDoesNotExist(f"No site exists with `{attrname}`==`{value}`.")
201
200
 
202
- def all(
203
- self, aslist: bool | None = None
204
- ) -> dict[int, SingleSite] | list[SingleSite]:
201
+ def all(self, aslist: bool | None = None) -> dict[int, SingleSite] | list[SingleSite]:
205
202
  if aslist:
206
203
  return list(self._registry.values())
207
204
  return self._registry
@@ -209,8 +206,7 @@ class Sites:
209
206
  @property
210
207
  def countries(self) -> list[str]:
211
208
  return (
212
- list(set([single_site.country for single_site in self._registry.values()]))
213
- or []
209
+ list(set([single_site.country for single_site in self._registry.values()])) or []
214
210
  )
215
211
 
216
212
  def get_by_country(
@@ -275,9 +271,7 @@ class Sites:
275
271
  get_message_text(messages.ERROR),
276
272
  )
277
273
  else:
278
- site_ids = [
279
- s.id for s in user.userprofile.sites.all() if s.id != site_id
280
- ]
274
+ site_ids = [s.id for s in user.userprofile.sites.all() if s.id != site_id]
281
275
  if request:
282
276
  add_to_messages_once(
283
277
  request, messages.WARNING, get_message_text(messages.WARNING)
@@ -40,10 +40,7 @@ def compare_single_sites_with_db():
40
40
  if not get_site_model_cls().objects.all().exists():
41
41
  raise SitesCheckError("No sites have been imported. You need to run migrate")
42
42
  ids1 = sorted(list(site_sites.all()))
43
- ids2 = [
44
- x[0]
45
- for x in get_site_model_cls().objects.values_list("id").all().order_by("id")
46
- ]
43
+ ids2 = [x[0] for x in get_site_model_cls().objects.values_list("id").all().order_by("id")]
47
44
  if ids1 != ids2:
48
45
  raise SitesCheckError(
49
46
  f"Site table is out of sync. Got registered sites = {ids1}. "
@@ -5,9 +5,9 @@ import sys
5
5
  from django.apps import apps as django_apps
6
6
  from django.core.exceptions import ObjectDoesNotExist
7
7
 
8
+ from ..single_site import SingleSite
8
9
  from .get_or_create_site_obj import get_or_create_site_obj
9
10
  from .get_or_create_site_profile_obj import get_or_create_site_profile_obj
10
- from ..single_site import SingleSite
11
11
 
12
12
 
13
13
  class UpdateDjangoSitesError(Exception):
@@ -57,9 +57,7 @@ def add_or_update_django_sites(
57
57
  if single_site.name == "edc_sites.sites":
58
58
  continue
59
59
  if verbose:
60
- sys.stdout.write(
61
- f" * SingleSite: {single_site.site_id}: {single_site.domain}.\n"
62
- )
60
+ sys.stdout.write(f" * SingleSite: {single_site.site_id}: {single_site.domain}.\n")
63
61
  site_obj = get_or_create_site_obj(single_site, apps)
64
62
  if verbose:
65
63
  sys.stdout.write(f" - Site model: {site_obj.id}: {site_obj.domain}.\n")
@@ -1,12 +1,12 @@
1
1
  # Generated by Django 3.2.13 on 2022-08-25 01:51
2
2
 
3
3
  import _socket
4
- from django.db import migrations, models
5
4
  import django_audit_fields.fields.hostname_modification_field
6
5
  import django_audit_fields.fields.userfield
7
6
  import django_audit_fields.fields.uuid_auto_field
8
7
  import django_audit_fields.models.audit_model_mixin
9
8
  import django_revision.revision_field
9
+ from django.db import migrations, models
10
10
 
11
11
 
12
12
  class Migration(migrations.Migration):
@@ -1,8 +1,8 @@
1
1
  # Generated by Django 4.2.4 on 2023-08-23 01:13
2
2
 
3
3
  import _socket
4
- from django.db import migrations, models
5
4
  import django_audit_fields.fields.hostname_modification_field
5
+ from django.db import migrations, models
6
6
 
7
7
 
8
8
  class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
14
14
  migrations.AlterField(
15
15
  model_name="edcpermissions",
16
16
  name="device_created",
17
- field=models.CharField(
18
- blank=True, max_length=10, verbose_name="Device created"
19
- ),
17
+ field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
20
18
  ),
21
19
  migrations.AlterField(
22
20
  model_name="edcpermissions",
23
21
  name="device_modified",
24
- field=models.CharField(
25
- blank=True, max_length=10, verbose_name="Device modified"
26
- ),
22
+ field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
27
23
  ),
28
24
  migrations.AlterField(
29
25
  model_name="edcpermissions",
@@ -0,0 +1,26 @@
1
+ # Generated by Django 5.2.4 on 2025-09-10 03:24
2
+
3
+ import django_revision.revision_field
4
+ from django.db import migrations
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_subject_dashboard", "0003_edcpermissions_locale_created_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
15
+ model_name="edcpermissions",
16
+ name="revision",
17
+ field=django_revision.revision_field.RevisionField(
18
+ blank=True,
19
+ editable=False,
20
+ help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
21
+ max_length=75,
22
+ null=True,
23
+ verbose_name="Revision",
24
+ ),
25
+ ),
26
+ ]
@@ -25,9 +25,7 @@ class RequisitionLabels:
25
25
  if requisition.is_drawn != NO:
26
26
  item_count = requisition.item_count or 1
27
27
  for item in range(1, item_count + 1):
28
- label = self.label_cls(
29
- requisition=requisition, user=user, item=item
30
- )
28
+ label = self.label_cls(requisition=requisition, user=user, item=item)
31
29
  zpl_datas.append(label.render_as_zpl_data(copies=1))
32
30
  else:
33
31
  self.requisitions_not_printed.append(requisition)
@@ -42,9 +42,7 @@ class RequisitionReport(Report):
42
42
  try:
43
43
  shipper = Shipper.objects.all()[0]
44
44
  except IndexError:
45
- messages.error(
46
- self.request, "Unable to print report. Please define the shipper."
47
- )
45
+ messages.error(self.request, "Unable to print report. Please define the shipper.")
48
46
  shipper = Shipper()
49
47
  return shipper
50
48
 
@@ -62,9 +60,7 @@ class RequisitionReport(Report):
62
60
  Paragraph("REFERENCE", self.styles["line_label"]),
63
61
  ],
64
62
  [
65
- Paragraph(
66
- get_utcnow().strftime("%Y-%m-%d"), self.styles["line_data_largest"]
67
- ),
63
+ Paragraph(get_utcnow().strftime("%Y-%m-%d"), self.styles["line_data_largest"]),
68
64
  Paragraph(
69
65
  convert_to_human_readable(self.timestamp),
70
66
  self.styles["line_data_largest"],
@@ -86,12 +82,8 @@ class RequisitionReport(Report):
86
82
 
87
83
  data = [
88
84
  [
89
- Paragraph(
90
- "FROM (complete name and address)", self.styles["line_label"]
91
- ),
92
- Paragraph(
93
- "DELIVER TO (complete name and address)", self.styles["line_label"]
94
- ),
85
+ Paragraph("FROM (complete name and address)", self.styles["line_label"]),
86
+ Paragraph("DELIVER TO (complete name and address)", self.styles["line_label"]),
95
87
  ],
96
88
  [
97
89
  Paragraph(
@@ -186,9 +178,7 @@ class RequisitionReport(Report):
186
178
  ),
187
179
  ],
188
180
  [
189
- Paragraph(
190
- "SIGNATURE (sign next to your name.)", self.styles["line_label"]
191
- ),
181
+ Paragraph("SIGNATURE (sign next to your name.)", self.styles["line_label"]),
192
182
  "",
193
183
  Paragraph("DATE", self.styles["line_label"]),
194
184
  ],
@@ -27,9 +27,7 @@ class RequisitionVerifier:
27
27
  self.requisition.is_drawn = self.requisition.is_drawn or YES
28
28
  self.requisition.item_count = self.requisition.item_count or 1
29
29
  self.requisition.item_type = self.requisition.item_type or TUBE
30
- self.requisition.drawn_datetime = (
31
- self.requisition.drawn_datetime or get_utcnow()
32
- )
30
+ self.requisition.drawn_datetime = self.requisition.drawn_datetime or get_utcnow()
33
31
  self.requisition.save()
34
32
  self.verified = self.requisition.clinic_verified
35
33
 
@@ -37,10 +35,7 @@ class RequisitionVerifier:
37
35
  return f"{self.requisition_identifier} {self.verified}"
38
36
 
39
37
  def __repr__(self):
40
- return (
41
- f"<{self.__class__.__name__}("
42
- "{self.requisition_identifier}) {self.verified}>"
43
- )
38
+ return f"<{self.__class__.__name__}(" "{self.requisition_identifier}) {self.verified}>"
44
39
 
45
40
  @property
46
41
  def requisition(self):
@@ -176,9 +176,7 @@ def render_crf_totals(appointment: Appointment = None) -> dict[str, bool | int]:
176
176
  overdue = True
177
177
  else:
178
178
  crf_keyed = helper.get_crf_metadata_by(entry_status=KEYED).count()
179
- requisition_keyed = helper.get_requisition_metadata_by(
180
- entry_status=KEYED
181
- ).count()
179
+ requisition_keyed = helper.get_requisition_metadata_by(entry_status=KEYED).count()
182
180
  crf_total = helper.get_crf_metadata_by(entry_status=[REQUIRED, KEYED]).count()
183
181
  requisition_total = helper.get_requisition_metadata_by(
184
182
  entry_status=[REQUIRED, KEYED]
@@ -470,9 +468,7 @@ def render_screening_button(context, subject_screening) -> dict:
470
468
  def render_subject_schedule_button(
471
469
  subject_dashboard_url: str, subject_identifier: str
472
470
  ) -> dict:
473
- url = reverse(
474
- subject_dashboard_url, kwargs=dict(subject_identifier=subject_identifier)
475
- )
471
+ url = reverse(subject_dashboard_url, kwargs=dict(subject_identifier=subject_identifier))
476
472
  return dict(url=url, subject_identifier=subject_identifier)
477
473
 
478
474
 
@@ -46,8 +46,7 @@ class SubjectVisitViewMixin:
46
46
  self._related_visit = self.appointment.related_visit
47
47
  except AttributeError as e:
48
48
  raise SubjectVisitViewMixinError(
49
- "Visit model must have a OneToOne relation to appointment. "
50
- f"Got {e}"
49
+ "Visit model must have a OneToOne relation to appointment. " f"Got {e}"
51
50
  )
52
51
  return self._related_visit
53
52
 
@@ -14,9 +14,7 @@ class CrfButton(DashboardModelButton):
14
14
 
15
15
  @property
16
16
  def extra_kwargs(self) -> dict[str, str | int | UUID]:
17
- return {
18
- self.model_cls().related_visit_model_attr(): self.appointment.related_visit.id
19
- }
17
+ return {self.model_cls().related_visit_model_attr(): self.appointment.related_visit.id}
20
18
 
21
19
  @property
22
20
  def disabled(self) -> str:
@@ -56,9 +56,7 @@ class SubjectConsentListboardButton(ModelButton):
56
56
 
57
57
  @property
58
58
  def site(self) -> Site | None:
59
- return getattr(self.screening_obj, "site", None) or getattr(
60
- self.request, "site", None
61
- )
59
+ return getattr(self.screening_obj, "site", None) or getattr(self.request, "site", None)
62
60
 
63
61
  @property
64
62
  def label(self) -> str:
@@ -32,9 +32,7 @@ SKIPPED = 2
32
32
 
33
33
  @dataclass
34
34
  class TimepointStatusButton(AppointmentButton):
35
- labels: tuple[str, str, str] = field(
36
- default=("Start", "Visit Report", "Visit Report")
37
- )
35
+ labels: tuple[str, str, str] = field(default=("Start", "Visit Report", "Visit Report"))
38
36
  colors: tuple[str, str, str, str] = field(
39
37
  default=("warning", "success", "default", "danger")
40
38
  )
@@ -70,9 +70,7 @@ class RequisitionPrintActionsView(BaseRequisitionView):
70
70
 
71
71
  if labels.zpl_data:
72
72
  try:
73
- job_id = self.clinic_label_printer.stream_print(
74
- zpl_data=labels.zpl_data
75
- )
73
+ job_id = self.clinic_label_printer.stream_print(zpl_data=labels.zpl_data)
76
74
  except (PrintServerError, PrinterError) as e:
77
75
  messages.error(self.request, str(e))
78
76
  else:
@@ -84,9 +82,7 @@ class RequisitionPrintActionsView(BaseRequisitionView):
84
82
  )
85
83
  messages.success(self.request, job_result.message)
86
84
  if labels.requisitions_not_printed:
87
- panels = ", ".join(
88
- [str(r.panel_object) for r in labels.requisitions_not_printed]
89
- )
85
+ panels = ", ".join([str(r.panel_object) for r in labels.requisitions_not_printed])
90
86
  messages.warning(
91
87
  self.request, f"Some selected labels were not printed. See {panels}."
92
88
  )
@@ -102,9 +98,7 @@ class RequisitionPrintActionsView(BaseRequisitionView):
102
98
  )
103
99
  response = requisition_report.render_to_response()
104
100
  else:
105
- messages.error(
106
- self.request, 'Nothing to do. No "verified" requisitions selected.'
107
- )
101
+ messages.error(self.request, 'Nothing to do. No "verified" requisitions selected.')
108
102
  response = None
109
103
  return response
110
104
 
@@ -114,9 +108,7 @@ class RequisitionPrintActionsView(BaseRequisitionView):
114
108
  appointment.
115
109
  """
116
110
  if not self._requisition_metadata:
117
- appointment = Appointment.objects.get(
118
- pk=self.request.POST.get("appointment")
119
- )
111
+ appointment = Appointment.objects.get(pk=self.request.POST.get("appointment"))
120
112
  subject_identifier = self.request.POST.get("subject_identifier")
121
113
  opts = dict(
122
114
  subject_identifier=subject_identifier,
@@ -15,9 +15,7 @@ class RequisitionVerifyActionsView(BaseRequisitionView):
15
15
  appointment_pk = request.POST.get("appointment")
16
16
  if request.POST.get("requisition_identifier"):
17
17
  requisition_identifier = (
18
- request.POST.get("requisition_identifier")
19
- .replace("-", "")
20
- .replace(" ", "")
18
+ request.POST.get("requisition_identifier").replace("-", "").replace(" ", "")
21
19
  )
22
20
  requisition_verifier = self.requisition_verifier_cls(
23
21
  appointment_pk=appointment_pk,