clinicedc 2.0.0__py3-none-any.whl → 2.0.2__py3-none-any.whl

{clinicedc-2.0.0.dist-info → clinicedc-2.0.2.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: uv 0.8.15
+Generator: uv 0.8.17
 Root-Is-Purelib: true
 Tag: py3-none-any

edc_action_item/action.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
 import logging
-from typing import List, Optional, Type, TYPE_CHECKING
+from typing import TYPE_CHECKING, List, Optional, Type
 
 from django.apps import apps as django_apps
 from django.conf import settings
@@ -14,7 +14,8 @@ from edc_action_item.stubs import ActionItemStub
 from edc_constants.constants import CLOSED, NEW, OPEN
 from edc_model.constants import DEFAULT_BASE_FIELDS
 from edc_sites.utils import valid_site_for_subject_or_raise
-from .create_action_item import create_action_item, SingletonActionItemError
+
+from .create_action_item import SingletonActionItemError, create_action_item
 from .exceptions import ActionError
 from .get_action_type import get_action_type
 from .site_action_items import site_action_items
@@ -60,9 +61,7 @@ class Action:
 
     action_item_model: str = "edc_action_item.actionitem"
     action_type_model: str = "edc_action_item.actiontype"
-    next_actions: list[str] | None = (
-        None  # a list of Action classes which may include 'self'
-    )
+    next_actions: list[str] | None = None  # a list of Action classes which may include 'self'
 
     def __init__(
         self,
@@ -169,9 +168,7 @@ class Action:
                 except ObjectDoesNotExist:
                     if self.action_item and self.action_item.status == CLOSED:
                         self.action_item.status = OPEN
-                        self.action_item.save(
-                            update_fields=["status"], using=self.using
-                        )
+                        self.action_item.save(update_fields=["status"], using=self.using)
                         self.action_item.refresh_from_db()
         return self._reference_obj
 
@@ -204,9 +201,7 @@ class Action:
                 )
                 try:
                     self._action_item = (
-                        self.action_item_model_cls()
-                        .objects.using(self.using)
-                        .get(**opts)
+                        self.action_item_model_cls().objects.using(self.using).get(**opts)
                     )
                 except ObjectDoesNotExist:
                     # does not exist so create ...
@@ -302,14 +297,10 @@ class Action:
                 True if cls.show_on_dashboard is None else cls.show_on_dashboard
             ),
             show_link_to_changelist=(
-                True
-                if cls.show_link_to_changelist is None
-                else cls.show_link_to_changelist
+                True if cls.show_link_to_changelist is None else cls.show_link_to_changelist
             ),
             create_by_user=(True if cls.create_by_user is None else cls.create_by_user),
-            create_by_action=(
-                True if cls.create_by_action is None else cls.create_by_action
-            ),
+            create_by_action=(True if cls.create_by_action is None else cls.create_by_action),
             instructions=cls.instructions,
         )
         return dct
@@ -349,15 +340,11 @@ class Action:
         next_actions = list(set(self.get_next_actions()))
         for action_name in next_actions:
             action_cls = (
-                self.__class__
-                if action_name == "self"
-                else site_action_items.get(action_name)
+                self.__class__ if action_name == "self" else site_action_items.get(action_name)
             )
             action_type = get_action_type(action_cls)
             if action_type.related_reference_model:
-                related_action_item = (
-                    self.action_item.related_action_item or self.action_item
-                )
+                related_action_item = self.action_item.related_action_item or self.action_item
             else:
                 related_action_item = None
             action_cls(
@@ -389,9 +376,7 @@ class Action:
                             self.reference_obj.action_identifier
                         )
                     )
-                    | models.Q(
-                        related_action_item=self.reference_obj.action_item
-                    )  # noqa
+                    | models.Q(related_action_item=self.reference_obj.action_item)  # noqa
                 ),
                 status=CLOSED,
             )
@@ -426,9 +411,7 @@ class Action:
             # most recent saved history. But how could self.reference_obj
             # be changed??
             history = (
-                self.reference_obj.history.using(self.using)
-                .all()
-                .order_by("-history_date")[0]
+                self.reference_obj.history.using(self.using).all().order_by("-history_date")[0]
             )
         except IndexError:
             pass
@@ -443,9 +426,7 @@ class Action:
             ]
             for field_name in field_names:
                 try:
-                    if getattr(history, field_name) != getattr(
-                        self.reference_obj, field_name
-                    ):
+                    if getattr(history, field_name) != getattr(self.reference_obj, field_name):
                         changed_message.update(
                             {field_name: getattr(self.reference_obj, field_name)}
                         )

edc_action_item/action_with_notification.py

@@ -33,8 +33,7 @@ class ActionWithNotification(Action):
                     name=f"{cls.name}-notification",
                     notification_action_name=cls.name,
                     display_name=(
-                        cls.notification_display_name
-                        or f"{cls.display_name} Notification"
+                        cls.notification_display_name or f"{cls.display_name} Notification"
                     ),
                     email_to=cls.notification_email_to,
                     notification_fields=cls.notification_fields,

edc_action_item/admin/action_item_admin.py

@@ -99,9 +99,7 @@ class ActionItemAdmin(
     additional_instructions = format_html(
         "{}",
         mark_safe(  # nosec #B703 # B308
-            render_to_string(
-                "edc_action_item/action_item_admin_additional_instructions.html"
-            )
+            render_to_string("edc_action_item/action_item_admin_additional_instructions.html")
         ),
     )
 
@@ -151,7 +149,5 @@ class ActionItemAdmin(
 
     def formfield_for_foreignkey(self, db_field, request, **kwargs):
         if db_field.name == "action_type":
-            kwargs["queryset"] = db_field.related_model.objects.filter(
-                create_by_user=True
-            )
+            kwargs["queryset"] = db_field.related_model.objects.filter(create_by_user=True)
         return super().formfield_for_foreignkey(db_field, request, **kwargs)

edc_action_item/admin_site.py

@@ -2,6 +2,4 @@ from edc_model_admin.admin_site import EdcAdminSite
 
 from .apps import AppConfig
 
-edc_action_item_admin = EdcAdminSite(
-    name="edc_action_item_admin", app_label=AppConfig.name
-)
+edc_action_item_admin = EdcAdminSite(name="edc_action_item_admin", app_label=AppConfig.name)

edc_action_item/auths.py

@@ -25,9 +25,7 @@ site_auths.add_custom_permissions_tuples(
 )
 
 site_auths.add_group(*action_items_codenames, name=ACTION_ITEM)
-site_auths.add_group(
-    *action_items_codenames, name=ACTION_ITEM_VIEW_ONLY, view_only=True
-)
+site_auths.add_group(*action_items_codenames, name=ACTION_ITEM_VIEW_ONLY, view_only=True)
 site_auths.add_group(
     "edc_action_item.export_actionitem",
     "edc_action_item.export_actiontype",

edc_action_item/create_or_update_action_type.py

@@ -25,9 +25,7 @@ def create_or_update_action_type(
     opts = {}
     action_type_model_cls = apps.get_model(action_type_model)
     if options:
-        fields = [
-            f.name for f in action_type_model_cls._meta.get_fields() if f.name != "name"
-        ]
+        fields = [f.name for f in action_type_model_cls._meta.get_fields() if f.name != "name"]
         for attr, value in options.items():
             if attr in fields:
                 opts.update({attr: value})

edc_action_item/data_fixers.py

@@ -10,6 +10,7 @@ from django.db import connection
 from django.db.models.signals import post_delete, post_save, pre_save
 
 from edc_constants.constants import CLOSED, NEW, OPEN
+
 from .site_action_items import site_action_items
 
 
@@ -19,9 +20,7 @@ def fix_null_historical_action_identifier(app_label, models):
         for model in models:
             tbl = f"{app_label}_historical{model}"
             if not re.match("([a-z_]+)_historical([a-z]+)", tbl):
-                raise ValueError(
-                    f"Invalid table name when building sql statement. Got {tbl}"
-                )
+                raise ValueError(f"Invalid table name when building sql statement. Got {tbl}")
             tbl = re.match("([a-z_]+)_historical([a-z]+)", tbl).group()
             sql = (
                 f"update {tbl} set action_identifier=id "  # nosec B608
@@ -48,9 +47,7 @@ def fix_null_action_item_fk(apps, app_label, models):
         ][0]
         if model_cls.action_name:
             for obj in model_cls.objects.all():
-                sys.stdout.write(
-                    f"fixing {model_cls.action_name} action_item for {obj}.\n"
-                )
+                sys.stdout.write(f"fixing {model_cls.action_name} action_item for {obj}.\n")
                 if not obj.action_item:
                     try:
                         obj.action_item_id = action_item_cls.objects.get(
@@ -80,10 +77,7 @@ def fix_null_action_items(apps):
         print(e)
     else:
         for action_item in action_items:
-            if (
-                not action_item.parent_action_item
-                and action_item.parent_action_identifier
-            ):
+            if not action_item.parent_action_item and action_item.parent_action_identifier:
                 parent_action_item = action_item_cls.objects.get(
                     action_identifier=action_item.parent_action_identifier
                 )
@@ -107,10 +101,7 @@ def fix_null_action_items(apps):
         print(e)
     else:
         for action_item in action_items:
-            if (
-                not action_item.related_action_item
-                and action_item.related_action_identifier
-            ):
+            if not action_item.related_action_item and action_item.related_action_identifier:
                 related_action_item = action_item_cls.objects.get(
                     action_identifier=action_item.related_action_identifier
                 )
@@ -162,9 +153,7 @@ def fix_null_related_action_items(apps):  # noqa
                     else:
                         related_action_item = related_reference_obj.action_item
                 if related_action_item:
-                    related_action_items.update(
-                        {related_action_item: related_action_item}
-                    )
+                    related_action_items.update({related_action_item: related_action_item})
                     action_item.related_action_item = related_action_item
                     action_item.save()
                     if reference_obj:
@@ -187,9 +176,7 @@ def fix_null_related_action_items(apps):  # noqa
         )
 
 
-def fix_action_item_sequence(
-    action_item_cls, action_identifier=None, subject_identifier=None
-):
+def fix_action_item_sequence(action_item_cls, action_identifier=None, subject_identifier=None):
     """Verify the parent sequence of action items given the
     related action item.
     """

edc_action_item/forms/action_item_form.py

@@ -33,9 +33,7 @@ class ActionItemForm(BaseModelFormMixin, forms.ModelForm):
             .objects.filter(action_identifier=self.instance.action_identifier)
             .exists()
         ):
-            raise forms.ValidationError(
-                {"status": "Invalid. This action cannot be cancelled"}
-            )
+            raise forms.ValidationError({"status": "Invalid. This action cannot be cancelled"})
 
     class Meta:
         model = ActionItem

edc_action_item/management/commands/inspect_action_items.py

@@ -53,19 +53,13 @@ class Command(BaseCommand):
                 action_item.action_cls.related_reference_fk_attr,
                 action_item.parent_action_item,
             )
-            model_cls = django_apps.get_model(
-                action_item.action_cls.get_reference_model()
-            )
+            model_cls = django_apps.get_model(action_item.action_cls.get_reference_model())
             try:
-                obj = model_cls.objects.get(
-                    action_identifier=action_item.action_identifier
-                )
+                obj = model_cls.objects.get(action_identifier=action_item.action_identifier)
             except ObjectDoesNotExist:
                 print("  skipping")
             else:
-                related_obj = getattr(
-                    obj, action_item.action_cls.related_reference_fk_attr
-                )
+                related_obj = getattr(obj, action_item.action_cls.related_reference_fk_attr)
                 if not self.dry_run:
                     related_obj.save()
                 else:

edc_action_item/migrations/0001_initial.py

@@ -4,11 +4,12 @@ import _socket
 import django.db.models.deletion
 import django_audit_fields.fields.uuid_auto_field
 import django_revision.revision_field
-import edc_model_fields.fields.hostname_modification_field
-import edc_utils
 from django.conf import settings
 from django.db import migrations, models
 
+import edc_model_fields.fields.hostname_modification_field
+import edc_utils
+
 
 class Migration(migrations.Migration):
     initial = True
@@ -681,8 +682,6 @@ class Migration(migrations.Migration):
         ),
         migrations.AlterUniqueTogether(
             name="actionitem",
-            unique_together={
-                ("subject_identifier", "action_type", "reference_identifier")
-            },
+            unique_together={("subject_identifier", "action_type", "reference_identifier")},
         ),
     ]

edc_action_item/migrations/0003_auto_20180116_1528.py

@@ -1,9 +1,10 @@
 # Generated by Django 2.0.1 on 2018-01-16 13:28
 
 import django.db.models.deletion
-import edc_sites.models
 from django.db import migrations, models
 
+import edc_sites.models
+
 
 class Migration(migrations.Migration):
     dependencies = [

edc_action_item/migrations/0006_auto_20180707_1659.py

@@ -4,10 +4,11 @@ import _socket
 import django.db.models.deletion
 import django_audit_fields.fields.uuid_auto_field
 import django_revision.revision_field
+from django.db import migrations, models
+
 import edc_model_fields.fields.hostname_modification_field
 import edc_model_fields.fields.userfield
 import edc_utils
-from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -202,9 +203,7 @@ class Migration(migrations.Migration):
         ),
         migrations.AlterUniqueTogether(
             name="actionitem",
-            unique_together={
-                ("subject_identifier", "action_type", "action_identifier")
-            },
+            unique_together={("subject_identifier", "action_type", "action_identifier")},
         ),
         migrations.AddField(
             model_name="action",

edc_action_item/migrations/0007_auto_20180707_1715.py

@@ -8,7 +8,5 @@ class Migration(migrations.Migration):
 
     operations = [
         migrations.RemoveField(model_name="actionitem", name="reference_identifier"),
-        migrations.RemoveField(
-            model_name="historicalactionitem", name="reference_identifier"
-        ),
+        migrations.RemoveField(model_name="historicalactionitem", name="reference_identifier"),
     ]

edc_action_item/migrations/0008_auto_20180809_0303.py

@@ -4,10 +4,11 @@ import _socket
 import django.db.models.deletion
 import django_audit_fields.fields.uuid_auto_field
 import django_revision.revision_field
+from django.db import migrations, models
+
 import edc_model_fields.fields.hostname_modification_field
 import edc_model_fields.fields.userfield
 import edc_utils
-from django.db import migrations, models
 
 
 class Migration(migrations.Migration):

edc_action_item/migrations/0014_auto_20181121_1738.py

@@ -8,12 +8,8 @@ class Migration(migrations.Migration):
 
     operations = [
         migrations.RemoveField(model_name="actionitemupdate", name="action_item"),
-        migrations.RemoveField(
-            model_name="historicalactionitemupdate", name="action_item"
-        ),
-        migrations.RemoveField(
-            model_name="historicalactionitemupdate", name="history_user"
-        ),
+        migrations.RemoveField(model_name="historicalactionitemupdate", name="action_item"),
+        migrations.RemoveField(model_name="historicalactionitemupdate", name="history_user"),
         migrations.DeleteModel(name="ActionItemUpdate"),
         migrations.DeleteModel(name="HistoricalActionItemUpdate"),
     ]

edc_action_item/migrations/0015_auto_20190114_0250.py

@@ -6,13 +6,14 @@ import _socket
 import django.db.models.deletion
 import django_audit_fields.fields.uuid_auto_field
 import django_revision.revision_field
-import edc_model_fields.fields.hostname_modification_field
-import edc_model_fields.fields.userfield
-import edc_utils
 import simple_history.models
 from django.conf import settings
 from django.db import migrations, models
 
+import edc_model_fields.fields.hostname_modification_field
+import edc_model_fields.fields.userfield
+import edc_utils
+
 
 class Migration(migrations.Migration):
     dependencies = [

edc_action_item/migrations/0021_auto_20190628_2113.py

@@ -7,9 +7,7 @@ class Migration(migrations.Migration):
     dependencies = [("edc_action_item", "0020_auto_20190628_2113")]
 
     operations = [
-        migrations.RemoveIndex(
-            model_name="actionitem", name="edc_action__action__b19a08_idx"
-        ),
+        migrations.RemoveIndex(model_name="actionitem", name="edc_action__action__b19a08_idx"),
         migrations.AddIndex(
             model_name="actionitem",
             index=models.Index(

edc_action_item/migrations/0022_auto_20190628_2136.py

@@ -7,12 +7,8 @@ class Migration(migrations.Migration):
     dependencies = [("edc_action_item", "0021_auto_20190628_2113")]
 
     operations = [
-        migrations.RemoveIndex(
-            model_name="actionitem", name="edc_action__action__fe58cb_idx"
-        ),
-        migrations.RemoveIndex(
-            model_name="actiontype", name="edc_action__name_f674a7_idx"
-        ),
+        migrations.RemoveIndex(model_name="actionitem", name="edc_action__action__fe58cb_idx"),
+        migrations.RemoveIndex(model_name="actiontype", name="edc_action__name_f674a7_idx"),
         migrations.AddIndex(
             model_name="actionitem",
             index=models.Index(

edc_action_item/migrations/0030_edcpermissions.py

@@ -1,12 +1,12 @@
 # Generated by Django 3.2.13 on 2022-08-25 01:51
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
 import django_audit_fields.models.audit_model_mixin
 import django_revision.revision_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):

edc_action_item/migrations/0033_alter_actionitem_managers.py

@@ -1,6 +1,7 @@
 # Generated by Django 4.2.1 on 2023-07-07 19:25
 
 from django.db import migrations
+
 import edc_action_item.models.action_item
 
 

edc_action_item/migrations/0034_alter_actionitem_device_created_and_more.py

@@ -1,8 +1,8 @@
 # Generated by Django 4.2.4 on 2023-08-23 01:13
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="actionitem",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="actionitem",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="actionitem",
@@ -49,16 +45,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="actiontype",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="actiontype",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="actiontype",
@@ -84,16 +76,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="edcpermissions",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="edcpermissions",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="edcpermissions",
@@ -119,16 +107,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalactionitem",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="historicalactionitem",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="historicalactionitem",
@@ -154,16 +138,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalreference",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="historicalreference",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="historicalreference",
@@ -189,16 +169,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="reference",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="reference",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="reference",