clinicedc 2.0.0__py3-none-any.whl → 2.0.2__py3-none-any.whl

edc_lab/migrations/0035_alter_aliquot_revision_alter_box_revision_and_more.py

@@ -0,0 +1,266 @@
+# Generated by Django 5.2.4 on 2025-09-10 03:24
+
+import django_revision.revision_field
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_lab", "0034_alter_aliquot_site_alter_box_site_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="aliquot",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="box",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="boxitem",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="boxtype",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="consignee",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalaliquot",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalbox",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalboxitem",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalconsignee",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalmanifest",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalorder",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalresult",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalresultitem",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalshipper",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="manifest",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="manifestitem",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="order",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="panel",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="result",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="resultitem",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="shipper",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+    ]

edc_lab/model_mixins/aliquot/aliquot_label_mixin.py

@@ -7,9 +7,7 @@ class AliquotLabelMixin:
     @property
     def requisition(self: Any):
         model = django_apps.get_model(*self.receive.requisition_model_name)
-        return model.objects.get(
-            requisition_identifier=self.receive.requisition_identifier
-        )
+        return model.objects.get(requisition_identifier=self.receive.requisition_identifier)
 
     def label_context(self: Any, extra_context=None):
         label_context = {}

edc_lab/model_mixins/aliquot/aliquot_model_mixin.py

@@ -34,25 +34,17 @@ class AliquotModelMixin(SiteModelMixin, models.Model):
         editable=False, default=1, help_text="e.g. number of tubes"
     )
 
-    original_measure = models.DecimalField(
-        max_digits=10, decimal_places=2, default="5.00"
-    )
+    original_measure = models.DecimalField(max_digits=10, decimal_places=2, default="5.00")
 
-    current_measure = models.DecimalField(
-        max_digits=10, decimal_places=2, default="5.00"
-    )
+    current_measure = models.DecimalField(max_digits=10, decimal_places=2, default="5.00")
 
     measure_units = models.CharField(
         max_length=25, choices=SPECIMEN_MEASURE_UNITS, default="mL"
     )
 
-    status = models.CharField(
-        max_length=25, choices=ALIQUOT_STATUS, default="available"
-    )
+    status = models.CharField(max_length=25, choices=ALIQUOT_STATUS, default="available")
 
-    condition = models.CharField(
-        max_length=25, choices=ALIQUOT_CONDITIONS, default="10"
-    )
+    condition = models.CharField(max_length=25, choices=ALIQUOT_CONDITIONS, default="10")
 
     comment = models.CharField(max_length=50, null=True, blank=True)
 

edc_lab/model_mixins/requisition/requisition_identifier_mixin.py

@@ -16,9 +16,7 @@ class RequisitionIdentifierMixin(models.Model):
         verbose_name="Requisition Id", max_length=50, unique=True
     )
 
-    identifier_prefix = models.CharField(
-        max_length=50, null=True, editable=False, unique=True
-    )
+    identifier_prefix = models.CharField(max_length=50, null=True, editable=False, unique=True)
 
     primary_aliquot_identifier = models.CharField(
         max_length=18, null=True, editable=False, unique=True

edc_lab/model_mixins/shipping/manifest_model_mixin.py

@@ -32,9 +32,7 @@ class ManifestModelMixin(SiteModelMixin, models.Model):
 
     status = models.CharField(max_length=15, default=OPEN, choices=STATUS)
 
-    category = models.CharField(
-        max_length=25, default=TESTING, choices=MANIFEST_CATEGORY
-    )
+    category = models.CharField(max_length=25, default=TESTING, choices=MANIFEST_CATEGORY)
 
     category_other = models.CharField(max_length=25, null=True, blank=True)
 

edc_lab/models/box_item.py

@@ -45,9 +45,7 @@ class BoxItem(SearchSlugModelMixin, VerifyModelMixin, BaseUuidModel):
         if self.identifier:
             x = self.identifier
             if re.match(aliquot_pattern, self.identifier):
-                return "{}-{}-{}-{}-{}".format(
-                    x[0:3], x[3:6], x[6:10], x[10:14], x[14:18]
-                )
+                return "{}-{}-{}-{}-{}".format(x[0:3], x[3:6], x[6:10], x[10:14], x[14:18])
         return self.identifier
 
     def get_slugs(self):

edc_lab/models/box_type.py

@@ -28,9 +28,7 @@ class BoxType(BaseUuidModel):
 
     total = models.IntegerField(help_text="total number of cells in this box type")
 
-    fill_order = models.CharField(
-        max_length=15, default=FILL_ACROSS, choices=FILL_ORDER
-    )
+    fill_order = models.CharField(max_length=15, default=FILL_ACROSS, choices=FILL_ORDER)
 
     objects = BoxTypeManager()
 

edc_lab/models/manifest/manifest.py

@@ -17,9 +17,7 @@ class Manager(ManifestManager, SearchSlugManager):
     pass
 
 
-class Manifest(
-    ManifestModelMixin, PdfReportModelMixin, SearchSlugModelMixin, BaseUuidModel
-):
+class Manifest(ManifestModelMixin, PdfReportModelMixin, SearchSlugModelMixin, BaseUuidModel):
     pdf_report_cls = ManifestPdfReport
 
     def get_search_slug_fields(self):
@@ -30,13 +28,9 @@ class Manifest(
             "consignee.name",
         ]
 
-    consignee = models.ForeignKey(
-        Consignee, verbose_name="Consignee", on_delete=PROTECT
-    )
+    consignee = models.ForeignKey(Consignee, verbose_name="Consignee", on_delete=PROTECT)
 
-    shipper = models.ForeignKey(
-        Shipper, verbose_name="Shipper/Exporter", on_delete=PROTECT
-    )
+    shipper = models.ForeignKey(Shipper, verbose_name="Shipper/Exporter", on_delete=PROTECT)
 
     objects = Manager()
 

edc_lab/models/manifest/manifest_item.py

@@ -15,9 +15,7 @@ class ManifestItemManager(SearchSlugManager, models.Manager):
         return self.get(identifier=identifier, manifest_identifier=manifest_identifier)
 
 
-class ManifestItem(
-    SiteModelMixin, SearchSlugModelMixin, VerifyModelMixin, BaseUuidModel
-):
+class ManifestItem(SiteModelMixin, SearchSlugModelMixin, VerifyModelMixin, BaseUuidModel):
     def get_search_slug_fields(self):
         return ["identifier", "human_readable_identifier"]
 

edc_lab/models/order.py

@@ -25,9 +25,7 @@ class Order(SiteModelMixin, BaseUuidModel):
 
     order_identifier = models.CharField(max_length=25, editable=False, unique=True)
 
-    order_datetime = models.DateTimeField(
-        default=get_utcnow, validators=[datetime_not_future]
-    )
+    order_datetime = models.DateTimeField(default=get_utcnow, validators=[datetime_not_future])
 
     panel_name = models.CharField(max_length=25)
 

edc_lab/models/signals.py

@@ -24,8 +24,6 @@ def manifest_item_on_post_delete(sender, instance, using, **kwargs):
         box.save()
 
 
-@receiver(
-    post_delete, weak=False, sender=BoxItem, dispatch_uid="box_item_on_post_delete"
-)
+@receiver(post_delete, weak=False, sender=BoxItem, dispatch_uid="box_item_on_post_delete")
 def box_item_on_post_delete(sender, instance, using, **kwargs):
     instance.box.save()

edc_lab/patterns.py

@@ -1,4 +1,2 @@
-aliquot_human_readable_pattern = (
-    r"^[0-9]{3}\-[0-9A-Z]{3}\-[0-9A-Z]{4}\-[0-9]{4}\-[0-9]{4}$"
-)
+aliquot_human_readable_pattern = r"^[0-9]{3}\-[0-9A-Z]{3}\-[0-9A-Z]{4}\-[0-9]{4}\-[0-9]{4}$"
 aliquot_pattern = r"^[0-9]{3}[0-9A-Z]{3}[0-9A-Z]{4}[0-9]{4}[0-9]{4}$"

edc_lab/pdf_reports/manifest_pdf_report.py

@@ -83,9 +83,7 @@ class ManifestPdfReport(Report):
 
         story.append(
             Paragraph(
-                "SPECIMEN MANIFEST{}".format(
-                    " (reprint)" if self.manifest.printed else ""
-                ),
+                "SPECIMEN MANIFEST{}".format(" (reprint)" if self.manifest.printed else ""),
                 self.styles["line_label_center"],
             )
         )
@@ -159,9 +157,7 @@ class ManifestPdfReport(Report):
                     "SHIPPER/EXPORTER (complete name and address)",
                     self.styles["line_label"],
                 ),
-                Paragraph(
-                    "CONSIGNEE (complete name and address)", self.styles["line_label"]
-                ),
+                Paragraph("CONSIGNEE (complete name and address)", self.styles["line_label"]),
             ],
             [
                 Paragraph(
@@ -197,16 +193,12 @@ class ManifestPdfReport(Report):
                 ),
             ],
             [
-                Paragraph(
-                    self.manifest.shipper.country, self.styles["line_data_largest"]
-                ),
+                Paragraph(self.manifest.shipper.country, self.styles["line_data_largest"]),
                 Paragraph(self.description, self.styles["line_data_large"]),
             ],
             [Paragraph("COUNTRY OF ORIGIN", self.styles["line_label"]), ""],
             [
-                Paragraph(
-                    self.manifest.shipper.country, self.styles["line_data_largest"]
-                ),
+                Paragraph(self.manifest.shipper.country, self.styles["line_data_largest"]),
                 "",
             ],
             [
@@ -214,9 +206,7 @@ class ManifestPdfReport(Report):
                 "",
             ],
             [
-                Paragraph(
-                    self.manifest.consignee.country, self.styles["line_data_largest"]
-                ),
+                Paragraph(self.manifest.consignee.country, self.styles["line_data_largest"]),
                 "",
             ],
         ]
@@ -355,9 +345,7 @@ class ManifestPdfReport(Report):
     @property
     def description(self):
         boxes = self.box_model.objects.filter(
-            box_identifier__in=[
-                obj.identifier for obj in self.manifest.manifestitem_set.all()
-            ]
+            box_identifier__in=[obj.identifier for obj in self.manifest.manifestitem_set.all()]
         )
         box_items = self.box_item_model.objects.filter(box__in=boxes)
         aliquots = self.aliquot_model.objects.filter(
@@ -399,9 +387,7 @@ class ManifestPdfReport(Report):
             data1 = []
             data1.append(box_header)
             try:
-                box = self.box_model.objects.get(
-                    box_identifier=manifest_item.identifier
-                )
+                box = self.box_model.objects.get(box_identifier=manifest_item.identifier)
             except ObjectDoesNotExist as e:
                 raise ManifestPdfReportError(
                     f"{e} Got Manifest item '{manifest_item.identifier}'.",
@@ -461,9 +447,7 @@ class ManifestPdfReport(Report):
                     [
                         barcode,
                         Paragraph(str(box_item.position), self.styles["row_data"]),
-                        Paragraph(
-                            aliquot.human_readable_identifier, self.styles["row_data"]
-                        ),
+                        Paragraph(aliquot.human_readable_identifier, self.styles["row_data"]),
                         Paragraph(aliquot.subject_identifier, self.styles["row_data"]),
                         Paragraph(
                             "{} ({}) {}".format(
@@ -495,9 +479,7 @@ class ManifestPdfReport(Report):
     def get_aliquot(self, box_item_identifier=None):
         """Returns the aliquot instance for this box item."""
         try:
-            aliquot = self.aliquot_model.objects.get(
-                aliquot_identifier=box_item_identifier
-            )
+            aliquot = self.aliquot_model.objects.get(aliquot_identifier=box_item_identifier)
         except ObjectDoesNotExist as e:
             raise ManifestPdfReportError(
                 f"{e} Got Box item '{box_item_identifier}'",

edc_lab/post_migrate_signals.py

@@ -9,6 +9,4 @@ def update_panels_on_post_migrate(sender, **kwargs):
 
     site_labs.migrated = True
     if site_labs.loaded:
-        site_labs.update_panel_model(
-            panel_model_cls=django_apps.get_model("edc_lab.panel")
-        )
+        site_labs.update_panel_model(panel_model_cls=django_apps.get_model("edc_lab.panel"))

edc_lab/site_labs.py

@@ -53,8 +53,7 @@ class SiteLabs:
     def registry(self):
         if not self.loaded:
             raise RegistryNotLoaded(
-                "Registry not loaded. Is AppConfig for 'edc_lab' "
-                "declared in settings?."
+                "Registry not loaded. Is AppConfig for 'edc_lab' " "declared in settings?."
             )
         return self._registry
 
@@ -84,15 +83,11 @@ class SiteLabs:
                     self.update_panel_model(panel_model_cls=panel_model_cls)
                     self.verify_reference_range_collections(lab_profile)
             else:
-                raise AlreadyRegistered(
-                    f"Lab profile {lab_profile} is already registered."
-                )
+                raise AlreadyRegistered(f"Lab profile {lab_profile} is already registered.")
 
     @property
     def lab_profiles(self):
-        return {
-            lab_profile.name: lab_profile for lab_profile in self._registry.values()
-        }
+        return {lab_profile.name: lab_profile for lab_profile in self._registry.values()}
 
     @property
     def panel_model_cls(self):
@@ -164,8 +159,7 @@ class SiteLabs:
                 .exists()
             ):
                 names = [
-                    obj.name
-                    for obj in reference_range_colllection_model_cls().objects.all()
+                    obj.name for obj in reference_range_colllection_model_cls().objects.all()
                 ]
                 raise SiteLabsLabProfileError(
                     "Unknown reference range collection. "

edc_lab_dashboard/migrations/0001_initial.py

@@ -1,12 +1,12 @@
 # Generated by Django 3.2.13 on 2022-08-25 01:51
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
 import django_audit_fields.models.audit_model_mixin
 import django_revision.revision_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):

edc_lab_dashboard/migrations/0002_alter_edcpermissions_device_created_and_more.py

@@ -1,8 +1,8 @@
 # Generated by Django 4.2.4 on 2023-08-23 01:13
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="edcpermissions",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="edcpermissions",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="edcpermissions",

edc_lab_dashboard/migrations/0004_alter_edcpermissions_revision.py

@@ -0,0 +1,26 @@
+# Generated by Django 5.2.4 on 2025-09-10 03:24
+
+import django_revision.revision_field
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_lab_dashboard", "0003_edcpermissions_locale_created_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="edcpermissions",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+    ]

edc_lab_dashboard/view_mixins/box_view_mixin.py

@@ -39,9 +39,7 @@ class BoxViewMixin(ContextMixin):
     def box_identifier(self):
         """Returns a cleaned box identifier."""
         if not self._box_identifier:
-            self.original_box_identifier = escape(
-                self.kwargs.get("box_identifier")
-            ).strip()
+            self.original_box_identifier = escape(self.kwargs.get("box_identifier")).strip()
             self._box_identifier = "".join(self.original_box_identifier.split("-"))
         return self._box_identifier