clinicedc 2.0.0__py3-none-any.whl → 2.0.2__py3-none-any.whl

edc_pharmacy/utils/confirm_stock_at_site.py

@@ -41,8 +41,8 @@ def confirm_stock_at_site(
     confirmation_at_site_model_cls: Type[ConfirmationAtSite] = django_apps.get_model(
         "edc_pharmacy.confirmationatsite"
     )
-    confirmation_at_site_item_model_cls: Type[ConfirmationAtSiteItem] = (
-        django_apps.get_model("edc_pharmacy.confirmationatsiteitem")
+    confirmation_at_site_item_model_cls: Type[ConfirmationAtSiteItem] = django_apps.get_model(
+        "edc_pharmacy.confirmationatsiteitem"
     )
     location_model_cls: Type[Location] = django_apps.get_model("edc_pharmacy.location")
 
@@ -58,9 +58,7 @@ def confirm_stock_at_site(
     for stock_code in stock_codes:
         if not stock_model_cls.objects.filter(code=stock_code).exists():
             invalid.append(stock_code)
-        elif not stock_transfer.stocktransferitem_set.filter(
-            stock__code=stock_code
-        ).exists():
+        elif not stock_transfer.stocktransferitem_set.filter(stock__code=stock_code).exists():
             invalid.append(stock_code)
         else:
             try:

edc_pharmacy/utils/dispense.py

@@ -29,10 +29,7 @@ def dispense(
 
     assignment_mismatch = False
     for stock in stock_model_cls.objects.filter(code__in=stock_codes):
-        if (
-            stock.allocation.registered_subject.subject_identifier
-            != rx.subject_identifier
-        ):
+        if stock.allocation.registered_subject.subject_identifier != rx.subject_identifier:
             messages.add_message(
                 request,
                 messages.ERROR,

edc_pharmacy/utils/get_unit_qty_out.py

@@ -17,7 +17,5 @@ def get_unit_qty_out(stock: Stock) -> Decimal:
     for stock_obj in stock.__class__.objects.filter(from_stock=stock):
         unit_qty_out += stock_obj.container.qty
     if stock.unit_qty_out > stock.unit_qty_in:
-        raise InsufficientStockError(
-            f"Unit QTY OUT cannot exceed Unit QTY IN. See {stock}."
-        )
+        raise InsufficientStockError(f"Unit QTY OUT cannot exceed Unit QTY IN. See {stock}.")
     return unit_qty_out

edc_pharmacy/utils/process_repack_request.py

@@ -11,9 +11,7 @@ from ..exceptions import InsufficientStockError, RepackError
 
 
 @shared_task
-def process_repack_request(
-    repack_request_id: UUID | None = None, username: str | None = None
-):
+def process_repack_request(repack_request_id: UUID | None = None, username: str | None = None):
     """Take from stock and fill container as new stock item."""
     repack_request_model_cls = django_apps.get_model("edc_pharmacy.repackrequest")
     stock_model_cls = django_apps.get_model("edc_pharmacy.stock")

edc_pharmacy/utils/process_repack_request_queryset.py

@@ -16,9 +16,7 @@ def process_repack_request_queryset(
     if not celery_is_active():
         repack_request_pks = repack_request_pks[:1]
     for pk in repack_request_pks:
-        run_task_sync_or_async(
-            process_repack_request, repack_request_id=pk, username=username
-        )
+        run_task_sync_or_async(process_repack_request, repack_request_id=pk, username=username)
 
     return None
 

edc_pharmacy/utils/stock_request/bulk_create_stock_request_items.py

@@ -23,12 +23,8 @@ def bulk_create_stock_request_items(
 ) -> None:
     bulk_create = True if bulk_create is None else bulk_create
     stock_request_model_cls = django_apps.get_model("edc_pharmacy.StockRequest")
-    stock_request_item_model_cls = django_apps.get_model(
-        "edc_pharmacy.StockRequestItem"
-    )
-    registered_subject_model_cls = django_apps.get_model(
-        "edc_registration.registeredsubject"
-    )
+    stock_request_item_model_cls = django_apps.get_model("edc_pharmacy.StockRequestItem")
+    registered_subject_model_cls = django_apps.get_model("edc_registration.registeredsubject")
     rx_model_cls = django_apps.get_model("edc_pharmacy.rx")
 
     stock_request = stock_request_model_cls.objects.get(pk=stock_request_pk)

edc_pharmacy/utils/stock_request/get_instock_and_nostock_data.py

@@ -26,8 +26,7 @@ def get_instock_and_nostock_data(
             qty_needed = (
                 stock_request.containers_per_subject
                 - df_stock.loc[
-                    (df_stock.subject_identifier == subject_identifier)
-                    & ~df_stock.dispensed
+                    (df_stock.subject_identifier == subject_identifier) & ~df_stock.dispensed
                 ].shape[0]
             )
             if qty_needed > 0:
@@ -35,13 +34,9 @@ def get_instock_and_nostock_data(
                     df_next_scheduled_visits.subject_identifier == subject_identifier
                 ].copy()
                 df_stock_needed["code"] = pd.NA
-                df_stock_needed = df_stock_needed.loc[
-                    df_stock_needed.index.repeat(qty_needed)
-                ]
+                df_stock_needed = df_stock_needed.loc[df_stock_needed.index.repeat(qty_needed)]
                 df_stock = pd.concat([df_stock, df_stock_needed]).reset_index(drop=True)
-                df_stock["dispensed"] = (
-                    df_stock["dispensed"].astype("boolean").fillna(False)
-                )
+                df_stock["dispensed"] = df_stock["dispensed"].astype("boolean").fillna(False)
                 df_stock["stock_qty"] = 0.0
     else:
         df_stock = df_next_scheduled_visits.copy()

edc_pharmacy/utils/transfer_stock.py

@@ -17,9 +17,7 @@ def transfer_stock(
     stock_transfer: StockTransfer, stock_codes: list[str], request: WSGIRequest = None
 ) -> tuple[list[str], list[str], list[str]]:
     stock_model_cls = django_apps.get_model("edc_pharmacy.stock")
-    stock_transfer_item_model_cls = django_apps.get_model(
-        "edc_pharmacy.stocktransferitem"
-    )
+    stock_transfer_item_model_cls = django_apps.get_model("edc_pharmacy.stocktransferitem")
     transferred, skipped_codes, invalid_codes = [], [], []
     for stock_code in stock_codes:
         try:

edc_pharmacy/utils/update_previous_refill_end_datetime.py

@@ -17,9 +17,7 @@ def update_previous_refill_end_datetime(instance):
         except ObjectDoesNotExist:
             pass
         else:
-            obj.refill_end_datetime = instance.refill_start_datetime - relativedelta(
-                seconds=1
-            )
+            obj.refill_end_datetime = instance.refill_start_datetime - relativedelta(seconds=1)
             obj.save_base(update_fields=["refill_end_datetime"])
 
 

edc_pharmacy/views/add_to_storage_bin_view.py

@@ -61,9 +61,7 @@ def update_bin(
 
 
 @method_decorator(login_required, name="dispatch")
-class AddToStorageBinView(
-    EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView
-):
+class AddToStorageBinView(EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView):
     model_pks: list[str] | None = None
     template_name: str = "edc_pharmacy/stock/add_to_storage_bin.html"
     navbar_name = settings.APP_NAME
@@ -170,9 +168,7 @@ class AddToStorageBinView(
         return None
 
     def post(self, request, *args, **kwargs):
-        stock_codes = (
-            request.POST.getlist("codes") if request.POST.get("codes") else None
-        )
+        stock_codes = request.POST.getlist("codes") if request.POST.get("codes") else None
         storage_bin = StorageBin.objects.get(id=kwargs.get("storage_bin"))
         items_to_scan = request.POST.get("items_to_scan") or kwargs.get("items_to_scan")
         if items_to_scan:

edc_pharmacy/views/allocate_to_subject_view.py

@@ -24,9 +24,7 @@ from ..utils import allocate_stock
 
 
 @method_decorator(login_required, name="dispatch")
-class AllocateToSubjectView(
-    EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView
-):
+class AllocateToSubjectView(EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView):
     model_pks: list[str] | None = None
     template_name: str = "edc_pharmacy/stock/allocate_to_subject.html"
     navbar_name = settings.APP_NAME
@@ -36,9 +34,7 @@ class AllocateToSubjectView(
     def get_context_data(self, **kwargs):
         remaining_count, total_count = self.get_counts(self.stock_request)
         show_count = (
-            self.items_per_page
-            if remaining_count >= self.items_per_page
-            else remaining_count
+            self.items_per_page if remaining_count >= self.items_per_page else remaining_count
         )
         kwargs.update(
             stock_request=self.stock_request,
@@ -235,9 +231,7 @@ class AllocateToSubjectView(
     ) -> str | None:
         if (
             stock_codes
-            and Stock.objects.filter(
-                code__in=stock_codes, allocation__isnull=False
-            ).exists()
+            and Stock.objects.filter(code__in=stock_codes, allocation__isnull=False).exists()
         ):
             allocated_stock_codes = []
             for stock in Stock.objects.filter(code__in=stock_codes):
@@ -326,26 +320,18 @@ class AllocateToSubjectView(
         return 0, 0
 
     def post(self, request, *args, **kwargs):
-        stock_codes = (
-            request.POST.getlist("codes") if request.POST.get("codes") else None
-        )
+        stock_codes = request.POST.getlist("codes") if request.POST.get("codes") else None
         subject_identifiers = request.POST.get("subject_identifiers")
         assignment_id = request.POST.get("assignment")
         subject_identifiers = ast.literal_eval(subject_identifiers)
         stock_request = StockRequest.objects.get(id=kwargs.get("stock_request"))
         assignment = self.get_assignment(assignment_id)
 
-        if url := self.redirect_on_all_allocated_for_assignment(
-            stock_request, assignment
-        ):
+        if url := self.redirect_on_all_allocated_for_assignment(stock_request, assignment):
             return HttpResponseRedirect(url)
-        if url := self.redirect_on_has_duplicates(
-            stock_codes, stock_request, assignment
-        ):
+        if url := self.redirect_on_has_duplicates(stock_codes, stock_request, assignment):
             return HttpResponseRedirect(url)
-        if url := self.redirect_on_invalid_stock_codes(
-            stock_codes, stock_request, assignment
-        ):
+        if url := self.redirect_on_invalid_stock_codes(stock_codes, stock_request, assignment):
             return HttpResponseRedirect(url)
         if url := self.redirect_on_uncomfirmed_stock_codes(
             stock_codes, stock_request, assignment

edc_pharmacy/views/confirm_stock_from_instance_view.py

@@ -57,9 +57,7 @@ class ConfirmStockFromInstanceView(
             item_count=list(range(1, unconfirmed_count + 1)),
             unconfirmed_count=unconfirmed_count,
             confirmed_count=confirmed_count,
-            confirmed_codes=self.get_confirmed_codes(
-                dct.get("obj"), dct.get("fk_attr")
-            ),
+            confirmed_codes=self.get_confirmed_codes(dct.get("obj"), dct.get("fk_attr")),
         )
         return super().get_context_data(**kwargs)
 
@@ -75,9 +73,7 @@ class ConfirmStockFromInstanceView(
             values_dict.update(fk_attr="receive_item__receive")
         return values_dict
 
-    def get_confirmed_codes(
-        self, obj: RepackRequest | Receive, fk_attr: str
-    ) -> list[str]:
+    def get_confirmed_codes(self, obj: RepackRequest | Receive, fk_attr: str) -> list[str]:
         return (
             Stock.objects.values_list("code", flat=True)
             .filter(**{fk_attr: obj.id, "confirmed": True})

edc_pharmacy/views/confirm_stock_from_queryset_view.py

@@ -67,10 +67,7 @@ class ConfirmStockFromQuerySetView(
                 ]
             )
             last_stock_codes.extend(
-                [
-                    [x, INVALID, _("invalid")]
-                    for x in session_obj.get("invalid_codes") or []
-                ]
+                [[x, INVALID, _("invalid")] for x in session_obj.get("invalid_codes") or []]
             )
             session_data = dict(
                 transaction_word=session_obj.get("transaction_word"),
@@ -184,9 +181,7 @@ class ConfirmStockFromQuerySetView(
                     source_model_name=self.session_data.get("source_model_name"),
                     stock_codes=self.session_data.get("stock_codes"),
                 )
-                url = reverse(
-                    "edc_pharmacy:confirm_stock_from_queryset_url", kwargs=kwargs
-                )
+                url = reverse("edc_pharmacy:confirm_stock_from_queryset_url", kwargs=kwargs)
             else:
                 self.request.session[self.kwargs.get("session_uuid")] = None
                 url = f"{self.source_changelist_url}?q="

edc_pharmacy/views/confirmation_at_site_view.py

@@ -38,9 +38,7 @@ class ConfirmationAtSiteView(
 
     def get_context_data(self, **kwargs):
         extra_opts = {}
-        stock_transfer = self.get_stock_transfer(
-            self.kwargs.get("stock_transfer_identifier")
-        )
+        stock_transfer = self.get_stock_transfer(self.kwargs.get("stock_transfer_identifier"))
         if not self.kwargs.get("session_uuid"):
             self.session_uuid = str(uuid4())
             session_obj = None
@@ -59,14 +57,9 @@ class ConfirmationAtSiteView(
         if session_obj:
             last_codes = [(x, "confirmed") for x in session_obj.get("confirmed") or []]
             last_codes.extend(
-                [
-                    (x, "already confirmed")
-                    for x in session_obj.get("already_confirmed") or []
-                ]
-            )
-            last_codes.extend(
-                [(x, "invalid") for x in session_obj.get("invalid") or []]
+                [(x, "already confirmed") for x in session_obj.get("already_confirmed") or []]
             )
+            last_codes.extend([(x, "invalid") for x in session_obj.get("invalid") or []])
             unconfirmed_count = self.get_unconfirmed_count(stock_transfer)
             extra_opts.update(
                 item_count=list(
@@ -97,9 +90,7 @@ class ConfirmationAtSiteView(
             to_location__site=self.site,
             stocktransferitem__stock__confirmationatsiteitem__isnull=True,
         )
-        return qs.annotate(count=Count("transfer_identifier")).order_by(
-            "-transfer_datetime"
-        )
+        return qs.annotate(count=Count("transfer_identifier")).order_by("-transfer_datetime")
 
     def get_adjusted_unconfirmed_count(self, stock_transfer):
         unconfirmed_count = self.get_unconfirmed_count(stock_transfer)
@@ -137,9 +128,7 @@ class ConfirmationAtSiteView(
 
     @property
     def location_id(self) -> uuid.UUID | None:
-        location_id = self.kwargs.get("location_id") or self.request.POST.get(
-            "location_id"
-        )
+        location_id = self.kwargs.get("location_id") or self.request.POST.get("location_id")
         if not location_id and self.site:
             try:
                 location = Location.objects.get(site=self.site)
@@ -168,9 +157,7 @@ class ConfirmationAtSiteView(
     def confirmation_at_site(self):
         confirmation_at_site_id = self.kwargs.get("confirmation_at_site")
         try:
-            confirmation_at_site = ConfirmationAtSite.objects.get(
-                id=confirmation_at_site_id
-            )
+            confirmation_at_site = ConfirmationAtSite.objects.get(id=confirmation_at_site_id)
         except ObjectDoesNotExist:
             confirmation_at_site = None
             messages.add_message(
@@ -181,12 +168,8 @@ class ConfirmationAtSiteView(
     @property
     def confirmation_at_site_changelist_url(self) -> str:
         if self.confirmation_at_site:
-            url = reverse(
-                "edc_pharmacy_admin:edc_pharmacy_confirmationatsite_changelist"
-            )
-            url = (
-                f"{url}?q={self.confirmation_at_site.transfer_confirmation_identifier}"
-            )
+            url = reverse("edc_pharmacy_admin:edc_pharmacy_confirmationatsite_changelist")
+            url = f"{url}?q={self.confirmation_at_site.transfer_confirmation_identifier}"
             return url
         return "/"
 
@@ -223,9 +206,7 @@ class ConfirmationAtSiteView(
             return HttpResponseRedirect(url)
 
         stock_transfer_identifier = request.POST.get("stock_transfer_identifier")
-        stock_transfer = self.get_stock_transfer(
-            stock_transfer_identifier, suppress_msg=True
-        )
+        stock_transfer = self.get_stock_transfer(stock_transfer_identifier, suppress_msg=True)
         location_id = request.POST.get("location_id")
         if not stock_transfer or not location_id:
             # nothing selected
@@ -234,9 +215,7 @@ class ConfirmationAtSiteView(
 
         session_uuid = request.POST.get("session_uuid")
         stock_codes = (
-            request.POST.getlist("stock_codes")
-            if request.POST.get("stock_codes")
-            else []
+            request.POST.getlist("stock_codes") if request.POST.get("stock_codes") else []
         )
 
         # you have unconfirmed items, so go to the scan page

edc_pharmacy/views/dispense_view.py

@@ -77,9 +77,7 @@ class DispenseView(EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, Template
     def confirmation_at_site(self):
         confirmation_at_site_id = self.kwargs.get("confirmation_at_site")
         try:
-            confirmation_at_site = ConfirmationAtSite.objects.get(
-                id=confirmation_at_site_id
-            )
+            confirmation_at_site = ConfirmationAtSite.objects.get(id=confirmation_at_site_id)
         except ObjectDoesNotExist:
             confirmation_at_site = None
             messages.add_message(
@@ -94,9 +92,7 @@ class DispenseView(EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, Template
         formulation = Formulation.objects.get(pk=formulation_id)
         subject_identifier = request.POST.get("subject_identifier")
         container_count = request.POST.get("container_count")
-        stock_codes = (
-            request.POST.getlist("codes") if request.POST.get("codes") else None
-        )
+        stock_codes = request.POST.getlist("codes") if request.POST.get("codes") else None
         rx = self.get_rx(subject_identifier, location, formulation)
         if not stock_codes and location and formulation and rx and container_count:
             url = reverse(

edc_pharmacy/views/move_to_storage_bin_view.py

@@ -27,9 +27,7 @@ def move_to_bin(
         stock_codes
     )
     if new_capacity > 50:
-        raise StorageBinError(
-            f"Storage bin {storage_bin.name} capacity may not exceeded 50"
-        )
+        raise StorageBinError(f"Storage bin {storage_bin.name} capacity may not exceeded 50")
     elif new_capacity > storage_bin.capacity:
         storage_bin.capacity = new_capacity
         storage_bin.save()
@@ -94,9 +92,7 @@ class MoveToStorageBinView(AddToStorageBinView):
         return None
 
     def post(self, request, *args, **kwargs):
-        stock_codes = (
-            request.POST.getlist("codes") if request.POST.get("codes") else None
-        )
+        stock_codes = request.POST.getlist("codes") if request.POST.get("codes") else None
         storage_bin = StorageBin.objects.get(id=kwargs.get("storage_bin"))
         items_to_scan = request.POST.get("items_to_scan") or kwargs.get("items_to_scan")
         if items_to_scan:

edc_pharmacy/views/prepare_and_review_stock_request_view.py

@@ -41,9 +41,7 @@ class PrepareAndReviewStockRequestView(
             StockRequestItem.objects.values(
                 "stock_request__request_identifier",
                 "registered_subject__subject_identifier",
-            ).filter(
-                stock_request__location=stock_request.location, allocation__isnull=True
-            )
+            ).filter(stock_request__location=stock_request.location, allocation__isnull=True)
         )
         df_unallocated_request_items.rename(
             columns={
@@ -67,9 +65,7 @@ class PrepareAndReviewStockRequestView(
         )
 
         # exclude unallocated subjects from appts
-        df = df[
-            ~df.subject_identifier.isin(df_unallocated_request_items.subject_identifier)
-        ]
+        df = df[~df.subject_identifier.isin(df_unallocated_request_items.subject_identifier)]
         df.reset_index(drop=True, inplace=True)
 
         kwargs.update(
@@ -113,9 +109,7 @@ class PrepareAndReviewStockRequestView(
             nostock_dict["stock_qty"] = 0.0
             self.request.session[session_uuid] = nostock_dict
 
-            stock_request_items_exist = (
-                stock_request.stockrequestitem_set.all().exists()
-            )
+            stock_request_items_exist = stock_request.stockrequestitem_set.all().exists()
             if stock_request_items_exist:
                 messages.add_message(
                     self.request,

edc_pharmacy/views/print_labels_view.py

@@ -22,9 +22,7 @@ from ..models import Stock
 
 
 @method_decorator(login_required, name="dispatch")
-class PrintLabelsView(
-    EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView
-):
+class PrintLabelsView(EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView):
     stock_pks: list[str] | None = None
     template_name: str = "edc_pharmacy/stock/print_labels.html"
     session_key = "model_pks"

edc_pharmacy/views/print_stock_transfer_manifest_view.py

@@ -6,9 +6,7 @@ from ..models import StockTransfer
 from ..pdf_reports import ManifestReport, NumberedCanvas
 
 
-def print_stock_transfer_manifest_view(
-    request, stock_transfer: StockTransfer | None = None
-):
+def print_stock_transfer_manifest_view(request, stock_transfer: StockTransfer | None = None):
 
     stock_transfer = StockTransfer.objects.get(pk=stock_transfer)
     response = HttpResponse(content_type="application/pdf")

edc_pharmacy/views/transfer_stock_view.py

@@ -16,9 +16,7 @@ from ..utils import transfer_stock
 
 
 @method_decorator(login_required, name="dispatch")
-class TransferStockView(
-    EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView
-):
+class TransferStockView(EdcViewMixin, NavbarViewMixin, EdcProtocolViewMixin, TemplateView):
     """A view for transferring stock from central to a site.
 
     Creates a StockTransferItem instance per stock instance.

edc_prn/modelform_mixins.py

@@ -29,9 +29,7 @@ class PrnFormValidatorMixin(BaseFormValidatorMixin):
         fldname: str = None,
         error_code: str = None,
     ) -> ConsentDefinition:
-        return site_consents.get_consent_definition(
-            report_datetime=self.report_datetime
-        )
+        return site_consents.get_consent_definition(report_datetime=self.report_datetime)
 
     @property
     def report_datetime(self) -> datetime:

edc_prn/prn.py

@@ -26,18 +26,14 @@ class Prn:
         self.model = model
         self.add_button_id = f"{'_'.join(model.split('.'))}_add"
         self.dashboard_url_name = dashboard_url_name  # next url
-        self.show_on_dashboard = (
-            True if show_on_dashboard is None else show_on_dashboard
-        )
+        self.show_on_dashboard = True if show_on_dashboard is None else show_on_dashboard
 
         self.url_name = "_".join(self.model.split("."))
         sep = ":" if self.url_namespace else ""
         self.add_url_name = None
         if self.allow_add:
             self.add_url_name = f"{self.url_namespace}{sep}{self.url_name}_add"
-        self.changelist_url_name = (
-            f"{self.url_namespace}{sep}{self.url_name}_changelist"
-        )
+        self.changelist_url_name = f"{self.url_namespace}{sep}{self.url_name}_changelist"
 
     def __repr__(self):
         return f"{self.__class__.__name__}(model={self.model})"

edc_prn/templatetags/edc_prn_extras.py

@@ -78,15 +78,11 @@ def add_prn_requisition_popover(appointment: Appointment, subject_dashboard_url)
             requisition.related_visit_model_attr = (
                 requisition.model_cls.related_visit_model_attr()
             )
-            requisition.related_visit = str(
-                getattr(appointment.related_visit, "id", "")
-            )
+            requisition.related_visit = str(getattr(appointment.related_visit, "id", ""))
             try:
-                panel_id = (
-                    requisition.model_cls.panel.field.remote_field.model.objects.get(
-                        name=requisition.panel.name
-                    ).id
-                )
+                panel_id = requisition.model_cls.panel.field.remote_field.model.objects.get(
+                    name=requisition.panel.name
+                ).id
             except ObjectDoesNotExist:
                 requisition.panel.id = None
                 requisition.panel.pk = None

edc_protocol/research_protocol_config.py

@@ -135,15 +135,12 @@ class ResearchProtocolConfig:
         return getattr(
             settings,
             "EDC_PROTOCOL_SUBJECT_IDENTIFIER_PATTERN",
-            r"%(protocol_number)s\-[0-9\-]+"
-            % dict(protocol_number=self.protocol_number),
+            r"%(protocol_number)s\-[0-9\-]+" % dict(protocol_number=self.protocol_number),
         )
 
     @property
     def screening_identifier_pattern(self) -> str:
-        return getattr(
-            settings, "EDC_PROTOCOL_SCREENING_IDENTIFIER_PATTERN", r"[A-Z0-9]{8}"
-        )
+        return getattr(settings, "EDC_PROTOCOL_SCREENING_IDENTIFIER_PATTERN", r"[A-Z0-9]{8}")
 
     @property
     def study_open_datetime(self) -> datetime:

edc_protocol_incident/admin/protocol_deviation_violation_admin.py

@@ -10,9 +10,7 @@ from ..models import ProtocolDeviationViolation
 
 
 @admin.register(ProtocolDeviationViolation, site=edc_protocol_incident_admin)
-class ProtocolDeviationViolationAdmin(
-    ModelAdminSubjectDashboardMixin, SimpleHistoryAdmin
-):
+class ProtocolDeviationViolationAdmin(ModelAdminSubjectDashboardMixin, SimpleHistoryAdmin):
     form = ProtocolDeviationViolationForm
 
     fieldsets = (

edc_protocol_incident/auth_objects.py

@@ -11,9 +11,7 @@ protocol_violation_codenames = (
     "edc_protocol_incident.view_protocoldeviationviolation",
 )
 
-protocol_violation_view_codenames = (
-    "edc_protocol_incident.view_protocoldeviationviolation",
-)
+protocol_violation_view_codenames = ("edc_protocol_incident.view_protocoldeviationviolation",)
 
 
 protocol_incident_codenames = (

edc_protocol_incident/auths.py

@@ -14,9 +14,7 @@ from .auth_objects import (
 )
 from .constants import PROTOCOL_DEVIATION_VIOLATION, PROTOCOL_INCIDENT
 
-incident_type = getattr(
-    settings, "EDC_PROTOCOL_VIOLATION_TYPE", PROTOCOL_DEVIATION_VIOLATION
-)
+incident_type = getattr(settings, "EDC_PROTOCOL_VIOLATION_TYPE", PROTOCOL_DEVIATION_VIOLATION)
 
 site_auths.add_group(*protocol_violation_codenames, name=PROTOCOL_VIOLATION)
 site_auths.add_group(*protocol_violation_view_codenames, name=PROTOCOL_VIOLATION_VIEW)

edc_protocol_incident/form_validators/mixins.py

@@ -35,19 +35,13 @@ class IncidentFormvalidatorMixin:
             field="report_status",
             field_required="report_closed_datetime",
         )
-        self.required_if(
-            WITHDRAWN, field="report_status", field_required="reasons_withdrawn"
-        )
+        self.required_if(WITHDRAWN, field="report_status", field_required="reasons_withdrawn")
 
         self.validate_date_not_before_incident("report_closed_datetime")
 
     def validate_date_not_before_incident(self, fld_name):
-        if self.cleaned_data.get(fld_name) and self.cleaned_data.get(
-            "incident_datetime"
-        ):
-            if self.cleaned_data.get(fld_name) < self.cleaned_data.get(
-                "incident_datetime"
-            ):
+        if self.cleaned_data.get(fld_name) and self.cleaned_data.get("incident_datetime"):
+            if self.cleaned_data.get(fld_name) < self.cleaned_data.get("incident_datetime"):
                 self.raise_validation_error(
                     {fld_name: "May not be before incident date/time"},
                     error_code=INVALID_ERROR,