clinicedc 2.0.0__py3-none-any.whl → 2.0.2__py3-none-any.whl

edc_export/migrations/0021_alter_datarequest_revision_and_more.py

@@ -0,0 +1,173 @@
+# Generated by Django 5.2.4 on 2025-09-10 03:24
+
+import django_revision.revision_field
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        (
+            "edc_export",
+            "0020_remove_datarequesthistory_edc_export__exporte_ba8050_idx_and_more",
+        ),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="datarequest",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="datarequesthistory",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="edcpermissions",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="exportreceipt",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="filehistory",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicaldatarequest",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalexportreceipt",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalfilehistory",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalobjecthistory",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalplan",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="objecthistory",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="plan",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="uploadexportreceiptfile",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+    ]

edc_export/model_exporter/model_exporter.py

@@ -100,17 +100,10 @@ class ModelExporter(object):
                         self.field_names.pop(self._field_names.index(f))
 
         for f in self._field_names:
-            if (
-                f in self.export_fields
-                or f in self.audit_fields
-                or f in self.required_fields
-            ):
+            if f in self.export_fields or f in self.audit_fields or f in self.required_fields:
                 self._field_names.pop(self._field_names.index(f))
         self._field_names = (
-            self.export_fields
-            + self.required_fields
-            + self.field_names
-            + self.audit_fields
+            self.export_fields + self.required_fields + self.field_names + self.audit_fields
         )
 
     @property
@@ -159,16 +152,12 @@ class ModelExporter(object):
         file_history_updater.update()
         return path
 
-    def prepare_row(
-        self, model_obj=None, exported_datetime=None, export_change_type=None
-    ):
+    def prepare_row(self, model_obj=None, exported_datetime=None, export_change_type=None):
         """Returns one row for the CSV writer.
 
         Most of the work is done by the ValueGetter class.
         """
-        additional_values = self.additional_values_cls(
-            export_datetime=exported_datetime
-        )
+        additional_values = self.additional_values_cls(export_datetime=exported_datetime)
         row = {}
         for field_name in self.field_names:
             value_getter = self.value_getter_cls(

edc_export/model_exporter/object_history_helpers.py

@@ -108,9 +108,7 @@ class ObjectHistoryHelper:
         self.create = create
 
     def get_not_exported(self):
-        return self.obj_getter.get_not_exported(
-            model_obj=self.model_obj, create=self.create
-        )
+        return self.obj_getter.get_not_exported(model_obj=self.model_obj, create=self.create)
 
     def update_as_exported(self, **kwargs):
         self.obj_updater.update_as_exported(**kwargs)

edc_export/model_exporter/value_getter.py

@@ -82,9 +82,7 @@ class ValueGetter:
             self._value = self.strip_value(self._value)
         return self._value
 
-    def _get_field_value(
-        self, model_obj: Type[MyModel] = None, field_name: str = None
-    ) -> Any:
+    def _get_field_value(self, model_obj: Type[MyModel] = None, field_name: str = None) -> Any:
         """Returns a field value.
 
         1. Tries to access a field as a model instance attribute;
@@ -104,13 +102,10 @@ class ValueGetter:
                 value = getattr(model_obj, field_name)
             except AttributeError:
                 if field_name in self.lookups:
-                    value = self.get_lookup_value(
-                        model_obj=model_obj, field_name=field_name
-                    )
+                    value = self.get_lookup_value(model_obj=model_obj, field_name=field_name)
                 else:
                     raise ValueGetterUnknownField(
-                        f"Unknown field name. Perhaps add a lookup. "
-                        f"Got {field_name}.",
+                        f"Unknown field name. Perhaps add a lookup. " f"Got {field_name}.",
                         code=field_name,
                     )
             if isinstance(value, Manager):
@@ -122,9 +117,7 @@ class ValueGetter:
                     )
         return value
 
-    def get_lookup_value(
-        self, model_obj: Type[MyModel] = None, field_name: str = None
-    ) -> Any:
+    def get_lookup_value(self, model_obj: Type[MyModel] = None, field_name: str = None) -> Any:
         """Returns the field value by following the lookup string
         to a related instance.
         """
@@ -144,9 +137,7 @@ class ValueGetter:
         """Returns the list of m2m field names for this model."""
         return [m2m.name for m2m in self.model_cls._meta.many_to_many]
 
-    def get_m2m_value(
-        self, model_obj: Type[MyModel] = None, field_name: str = None
-    ) -> str:
+    def get_m2m_value(self, model_obj: Type[MyModel] = None, field_name: str = None) -> str:
         """Returns an m2m field value as a delimited string."""
         return self.m2m_delimiter.join(
             [value.name for value in getattr(model_obj, field_name).all()]

edc_export/models/signals.py

@@ -21,9 +21,7 @@ def export_transaction_history_on_post_save(
                 raise AttributeError(e)
 
 
-@receiver(
-    pre_delete, weak=False, dispatch_uid="export_transaction_history_on_pre_delete"
-)
+@receiver(pre_delete, weak=False, dispatch_uid="export_transaction_history_on_pre_delete")
 def export_transaction_history_on_pre_delete(sender, instance, using, **kwargs):
     """Serializes the model instance, before deleting, to export
     history model if manager exists."""

edc_export/models/upload_export_receipt_file.py

@@ -42,9 +42,7 @@ class UploadExportReceiptFile(BaseUuidModel):
 
     def save(self, *args, **kwargs):
         if not self.id:
-            self.file_name = self.export_receipt_file.name.replace("\\", "/").split(
-                "/"
-            )[-1]
+            self.file_name = self.export_receipt_file.name.replace("\\", "/").split("/")[-1]
             self.update_file_history()
         super(UploadExportReceiptFile, self).save(*args, **kwargs)
 

edc_export/utils.py

@@ -60,10 +60,7 @@ def raise_if_prohibited_from_export_pii_group(username: str, groups: Iterable) -
 
     See also edc_auth's UserForm.
     """
-    if (
-        EXPORT_PII in [grp.name for grp in groups]
-        and username not in get_export_pii_users()
-    ):
+    if EXPORT_PII in [grp.name for grp in groups] and username not in get_export_pii_users():
         raise forms.ValidationError(
             {
                 "groups": format_html(

edc_export/views/export_selected_models_view.py

@@ -45,8 +45,7 @@ class ExportSelectedModelsView(EdcViewMixin, TemplateView):
         if self.request.session.get("selected_models"):
             kwargs.update(
                 selected_models=[
-                    ModelOptions(**dct)
-                    for dct in self.request.session["selected_models"]
+                    ModelOptions(**dct) for dct in self.request.session["selected_models"]
                 ]
             )
         return super().get_context_data(**kwargs)
@@ -74,9 +73,7 @@ class ExportSelectedModelsView(EdcViewMixin, TemplateView):
                     "Nothing to do. Select one or more models and try again.",
                 )
             except FilesEmailerError as e:
-                messages.error(
-                    request, f"Failed to send the data you requested. Got '{e}'"
-                )
+                messages.error(request, f"Failed to send the data you requested. Got '{e}'")
         url = reverse(self.post_action_url, kwargs=self.kwargs)
         return HttpResponseRedirect(url)
 
@@ -110,9 +107,7 @@ class ExportSelectedModelsView(EdcViewMixin, TemplateView):
                     "Please check your email."
                 )
             else:
-                msg = (
-                    f"Your data request has been saved to {exporter.archive_filename}. "
-                )
+                msg = f"Your data request has been saved to {exporter.archive_filename}. "
 
             messages.success(request, msg)
             summary = [str(x) for x in exporter.exported]
@@ -143,18 +138,12 @@ class ExportSelectedModelsView(EdcViewMixin, TemplateView):
         exportables = Exportables(request=request, user=request.user)
         selected_models = []
         for exportable in exportables:
-            selected_models.extend(
-                request.POST.getlist(f"chk_{exportable}_models") or []
-            )
+            selected_models.extend(request.POST.getlist(f"chk_{exportable}_models") or [])
             selected_models.extend(
                 request.POST.getlist(f"chk_{exportable}_historical_models") or []
             )
-            selected_models.extend(
-                request.POST.getlist(f"chk_{exportable}_list_models") or []
-            )
-            selected_models.extend(
-                request.POST.getlist(f"chk_{exportable}_inlines") or []
-            )
+            selected_models.extend(request.POST.getlist(f"chk_{exportable}_list_models") or [])
+            selected_models.extend(request.POST.getlist(f"chk_{exportable}_inlines") or [])
         if selected_models:
             selected_models = [ModelOptions(model=m) for m in selected_models if m]
         return selected_models

edc_facility/default_definitions.py

@@ -14,9 +14,7 @@ default_definitions: dict[str, dict[str, list | bool]] = {
     SEVEN_DAY_CLINIC: dict(
         days=[MO, TU, WE, TH, FR, SA, SU], slots=[100, 100, 100, 100, 100, 100, 100]
     ),
-    SIX_DAY_CLINIC: dict(
-        days=[MO, TU, WE, TH, FR, SA], slots=[100, 100, 100, 100, 100, 100]
-    ),
+    SIX_DAY_CLINIC: dict(days=[MO, TU, WE, TH, FR, SA], slots=[100, 100, 100, 100, 100, 100]),
     FIVE_DAY_CLINIC: dict(days=[MO, TU, WE, TH, FR], slots=[100, 100, 100, 100, 100]),
     FOUR_DAY_CLINIC: dict(days=[MO, TU, WE, TH], slots=[100, 100, 100, 100]),
     TU_WE_TH_CLINIC: dict(

edc_facility/facility.py

@@ -44,9 +44,7 @@ class Facility:
         if not name:
             raise FacilityError(f"Name cannot be None. See {repr(self)}")
         self.best_effort_available_datetime = (
-            True
-            if best_effort_available_datetime is None
-            else best_effort_available_datetime
+            True if best_effort_available_datetime is None else best_effort_available_datetime
         )
         for day in days:
             try:
@@ -63,10 +61,7 @@ class Facility:
 
     def __str__(self):
         description = ", ".join(
-            [
-                str(day) + "(" + str(slot) + " slots)"
-                for day, slot in self.config.items()
-            ]
+            [str(day) + "(" + str(slot) + " slots)" for day, slot in self.config.items()]
         )
         return f"{self.name.title()} {description}"
 
@@ -111,10 +106,7 @@ class Facility:
         max_arr = Arrow.fromdate(
             suggested_arr.datetime + forward_delta, tzinfo=ZoneInfo("UTC")
         )
-        span = [
-            arw[0]
-            for arw in Arrow.span_range("day", min_arr.datetime, max_arr.datetime)
-        ]
+        span = [arw[0] for arw in Arrow.span_range("day", min_arr.datetime, max_arr.datetime)]
         span_lt = [arw for arw in span if arw.date() < suggested_arr.date()]
         span_lt = sorted(span_lt, key=methodcaller("date"), reverse=True)
         span_gt = [arw for arw in span if arw.date() > suggested_arr.date()]
@@ -172,9 +164,7 @@ class Facility:
             if arr.date().weekday() in self.weekdays and (
                 min_arr.date() <= arr.date() < max_arr.date()
             ):
-                is_holiday = (
-                    False if schedule_on_holidays else self.is_holiday(arr.datetime)
-                )
+                is_holiday = False if schedule_on_holidays else self.is_holiday(arr.datetime)
                 if (
                     not is_holiday
                     and arr.date() not in [a.date() for a in taken_arr]

edc_facility/import_holidays.py

@@ -76,9 +76,7 @@ def import_file(path: str, recs: list, model_cls: Holiday):
                 )
             else:
                 try:
-                    obj = model_cls.objects.get(
-                        country=row["country"], local_date=local_date
-                    )
+                    obj = model_cls.objects.get(country=row["country"], local_date=local_date)
                 except ObjectDoesNotExist:
                     model_cls.objects.create(
                         country=row["country"], local_date=local_date, name=row["label"]

edc_facility/migrations/0005_healthfacility_healthfacilitytypes_and_more.py

@@ -10,14 +10,14 @@ import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
 import django_audit_fields.models.audit_model_mixin
 import django_revision.revision_field
-import edc_model_fields.fields.other_charfield
-import edc_sites.models
-import edc_utils.date
 import simple_history.models
 from django.conf import settings
 from django.db import migrations, models
 
 import edc_facility.model_mixins
+import edc_model_fields.fields.other_charfield
+import edc_sites.models
+import edc_utils.date
 
 
 class Migration(migrations.Migration):
@@ -195,9 +195,7 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "plural_name",
-                    models.CharField(
-                        max_length=250, null=True, verbose_name="Plural name"
-                    ),
+                    models.CharField(max_length=250, null=True, verbose_name="Plural name"),
                 ),
                 (
                     "display_name",

edc_facility/migrations/0006_alter_healthfacility_health_facility_type.py

@@ -1,7 +1,7 @@
 # Generated by Django 4.2.3 on 2023-07-25 18:31
 
-from django.db import migrations, models
 import django.db.models.deletion
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):

edc_facility/migrations/0008_alter_healthfacility_device_created_and_more.py

@@ -1,8 +1,8 @@
 # Generated by Django 4.2.4 on 2023-08-23 01:13
 
 import _socket
-from django.db import migrations, models
 import django_audit_fields.fields.hostname_modification_field
+from django.db import migrations, models
 
 
 class Migration(migrations.Migration):
@@ -14,16 +14,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="healthfacility",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="healthfacility",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="healthfacility",
@@ -49,16 +45,12 @@ class Migration(migrations.Migration):
         migrations.AlterField(
             model_name="historicalhealthfacility",
             name="device_created",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device created"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device created"),
         ),
         migrations.AlterField(
             model_name="historicalhealthfacility",
             name="device_modified",
-            field=models.CharField(
-                blank=True, max_length=10, verbose_name="Device modified"
-            ),
+            field=models.CharField(blank=True, max_length=10, verbose_name="Device modified"),
         ),
         migrations.AlterField(
             model_name="historicalhealthfacility",

edc_facility/migrations/0015_alter_healthfacility_revision_and_more.py

@@ -0,0 +1,38 @@
+# Generated by Django 5.2.4 on 2025-09-10 03:24
+
+import django_revision.revision_field
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_facility", "0014_healthfacility_title_historicalhealthfacility_title"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="healthfacility",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalhealthfacility",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                null=True,
+                verbose_name="Revision",
+            ),
+        ),
+    ]

edc_facility/models/holiday.py

@@ -21,9 +21,7 @@ class Holiday(models.Model):
 
     @property
     def formatted_date(self) -> str:
-        return self.local_date.strftime(
-            convert_php_dateformat(settings.SHORT_DATE_FORMAT)
-        )
+        return self.local_date.strftime(convert_php_dateformat(settings.SHORT_DATE_FORMAT))
 
     def __str__(self):
         return f"{self.label} on {self.formatted_date}"

edc_facility/utils.py

@@ -40,9 +40,7 @@ def get_facility(name: str = None) -> Facility:
     facilities = get_facilities()
     facility = facilities.get(name)
     if not facility:
-        raise FacilityError(
-            f"Facility '{name}' does not exist. Expected one of {facilities}."
-        )
+        raise FacilityError(f"Facility '{name}' does not exist. Expected one of {facilities}.")
     return facility
 
 

edc_fieldsets/fieldsets_modeladmin_mixin.py

@@ -71,9 +71,7 @@ class FieldsetsModelAdminMixin:
             except AttributeError:
                 pass
             try:
-                fieldsets.remove_fields(
-                    *fieldlist.remove_fields, section=fieldlist.section
-                )
+                fieldsets.remove_fields(*fieldlist.remove_fields, section=fieldlist.section)
             except AttributeError:
                 pass
         fieldsets.move_to_end(self.fieldsets_move_to_end)

edc_form_describer/form_describer.py

@@ -66,9 +66,7 @@ class FormDescriber:
         except AttributeError:
             self.model_cls = admin_cls.form._meta.model
         self.visit_code = visit_code
-        self.models_fields = {
-            fld.name: fld for fld in self.model_cls._meta.get_fields()
-        }
+        self.models_fields = {fld.name: fld for fld in self.model_cls._meta.get_fields()}
 
         # include custom labels from admin
         try:
@@ -171,9 +169,7 @@ class FormDescriber:
         if field_cls.help_text:
             self.markdown.append(f"\n     *{field_cls.help_text}*")
         if self.custom_form_labels.get(fname):
-            self.markdown.append(
-                f"* custom_prompt: *{self.custom_form_labels.get(fname)}*"
-            )
+            self.markdown.append(f"* custom_prompt: *{self.custom_form_labels.get(fname)}*")
         self.markdown.append(f"- db_table: {self.model_cls._meta.db_table}")
         self.markdown.append(f"- column: {field_cls.name}")
         try:
@@ -195,9 +191,7 @@ class FormDescriber:
             if field_cls.choices:
                 self.markdown.append("- responses:")
                 # TODO: expand custom choices
-                for response in [
-                    f"`{tpl[0]}`: *{tpl[1]}*" for tpl in field_cls.choices
-                ]:
+                for response in [f"`{tpl[0]}`: *{tpl[1]}*" for tpl in field_cls.choices]:
                     self.markdown.append(f"  - {response}")
             else:
                 self.markdown.append("- responses: *free text*")

edc_form_describer/make_forms_reference.py

@@ -25,9 +25,7 @@ def make_forms_reference(
     module = import_module(app_label)
     admin_site = getattr(getattr(module, "admin_site"), admin_site_name)
     visit_schedule = site_visit_schedules.get_visit_schedule(visit_schedule_name)
-    title = title or _("%(title_app)s Forms Reference") % dict(
-        title_app=app_label.upper()
-    )
+    title = title or _("%(title_app)s Forms Reference") % dict(title_app=app_label.upper())
     sys.stdout.write(
         style.MIGRATE_HEADING(f"Refreshing CRF reference document for {app_label}\n")
     )

edc_form_describer/management/commands/make_forms_reference.py

@@ -29,9 +29,7 @@ def update_forms_reference(
     filename = filename or "forms_reference.md"
     admin_site = getattr(getattr(module, "admin_site"), admin_site_name)
     visit_schedule = site_visit_schedules.get_visit_schedule(visit_schedule_name)
-    title = title or _("%(title_app)s Forms Reference") % dict(
-        title_app=app_label.upper()
-    )
+    title = title or _("%(title_app)s Forms Reference") % dict(title_app=app_label.upper())
     sys.stdout.write(
         style.MIGRATE_HEADING(f"Refreshing CRF reference document for {app_label}\n")
     )