bioregistry 0.13.16__py3-none-any.whl → 0.13.18__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- bioregistry/data/bioregistry.json +308 -149
- bioregistry/data/curated_papers.tsv +2 -0
- bioregistry/external/aberowl/processed.json +40 -22
- bioregistry/external/bartoc/processed.json +47 -19
- bioregistry/external/biolink/processed.json +3 -0
- bioregistry/external/bioportal/agroportal.json +137 -15
- bioregistry/external/bioportal/bioportal.json +155 -56
- bioregistry/external/bioportal/ecoportal.json +21 -0
- bioregistry/external/fairsharing/processed.json +27 -32
- bioregistry/external/go/processed.json +1 -0
- bioregistry/external/integbio/processed.json +158 -27
- bioregistry/external/obofoundry/processed.json +2 -1
- bioregistry/external/ols/processed.json +71 -113
- bioregistry/external/re3data/processed.json +69 -15
- bioregistry/version.py +1 -1
- {bioregistry-0.13.16.dist-info → bioregistry-0.13.18.dist-info}/METADATA +2 -2
- {bioregistry-0.13.16.dist-info → bioregistry-0.13.18.dist-info}/RECORD +19 -19
- {bioregistry-0.13.16.dist-info → bioregistry-0.13.18.dist-info}/WHEEL +2 -2
- {bioregistry-0.13.16.dist-info → bioregistry-0.13.18.dist-info}/entry_points.txt +0 -0
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"r3d100000023": {
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"description": "This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The Cell Image Library has been merged with \"Cell Centered Database\" in 2017. The purpose of the database is to advance research on cellular activity, with the ultimate goal of improving human health.",
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"doi": "10.17616/R3Z59M",
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"homepage": "
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"homepage": "https://www.cellimagelibrary.org/home",
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"name": "Cell Image Library",
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"prefix": "r3d100000023",
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"synonyms": [
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"r3d100000028": {
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"description": "The Data Hub is a community-run catalogue of useful sets of data on the Internet. You can collect links here to data from around the web for yourself and others to use, or search for data that others have collected. Depending on the type of data (and its conditions of use), the Data Hub may also be able to store a copy of the data or host it in a database, and provide some basic visualisation tools.",
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"doi": "10.17616/R3PP4D",
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"homepage": "https://datahub.io/",
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"license": "ODC",
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"description": "The Center for Tropical Forest Science (CTFS) is a global network of forest research plots committed to the study of tropical and temperate forest function and diversity. The multi-institutional network comprises more than forty forest research plots across the Americas, Africa, Asia, and Europe, with a strong focus on tropical regions.
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"description": "The Forest Global Earth Observatory (ForestGEO), previously known as Center for Tropical Forest Science (CTFS), is a global network of forest research plots committed to the study of tropical and temperate forest function and diversity. The multi-institutional network comprises more than forty forest research plots across the Americas, Africa, Asia, and Europe, with a strong focus on tropical regions. ForestGEO monitors the growth and survival of about 6 million trees of approximately 10,000 species.",
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"doi": "10.17616/R39G6P",
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"homepage": "https://forestgeo.si.edu/",
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"name": "Forest Global Earth Observatory",
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"r3d100010083": {
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"description": "STScI's innovative ways to share Hubble's remarkable discoveries with the public.HubbleSite prepares and disseminates the photographs and animations seen in the news... as well as posters, slide shows, exhibits, and educational products in print and electronic formats",
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"doi": "10.17616/R3RC72",
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"homepage": "https://science.nasa.gov/mission/hubble/multimedia/",
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"name": "HubbleSite",
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"prefix": "r3d100010083"
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"description": "The NASA Space Science Data Coordinated Archive serves as the permanent archive for NASA space science mission data. \"Space science\" means astronomy and astrophysics, solar and space plasma physics, and planetary and lunar science. As permanent archive, NSSDCA teams with NASA's discipline-specific space science \"active archives\" which provide access to data to researchers and, in some cases, to the general public.\nNSSDCA also serves as NASA's permanent archive for space physics mission data. It provides access to several geophysical models and to data from some non-NASA mission data.\nIn addition to supporting active space physics and astrophysics researchers, NSSDCA also supports the general public both via several public-interest web-based services (e.g., the Photo Gallery) and via the offline mailing of CD-ROMs, photoprints, and other items.",
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"doi": "10.17616/R3D01W",
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"homepage": "https://www.nasa.gov/nssdc/",
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"name": "NASA Space Science Data Coordinated Archive",
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"description": "The Prototype Data Portal allows to retrieve Data from World Data System (WDS) members. WDS ensures the long-term stewardship and provision of quality-assessed data and data services to the international science community and other stakeholders",
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"doi": "10.17616/R3P88S",
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"homepage": "https://
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"homepage": "https://worlddatasystem.org/",
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"name": "World Data System",
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"prefix": "r3d100011332",
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"synonyms": [
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"CLARIN INT Center",
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"CLARIN INT-portaal"
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"description": "MISTRALS database is a distributed system, that enables users to access datasets produced by all the projects (ChArMEx, HyMeX, MERMex, TerMex, CORSiCA, EMSO and MOOSE) and stored in different data centres. MISTRALS (Mediterranean Integrated STudies at Regional And Local Scales) is a decennial program for systematic observations and research dedicated to the understanding of the Mediterranean Basin environmental process under the planet global change.\n\nIt aims to coordinate, across the Mediterranean Basin, interdisciplinary research on atmosphere, hydrosphere, lithosphere and paleo-climate, including environmental ecology and social sciences. The objective is to achieve a better understanding of the mechanisms shaping and influencing landscape, environment and human impact of this eco-region.",
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"description": "<<<!!!<<< This repository is closed>>>!!!>>>MISTRALS database is a distributed system, that enables users to access datasets produced by all the projects (ChArMEx, HyMeX, MERMex, TerMex, CORSiCA, EMSO and MOOSE) and stored in different data centres. MISTRALS (Mediterranean Integrated STudies at Regional And Local Scales) is a decennial program for systematic observations and research dedicated to the understanding of the Mediterranean Basin environmental process under the planet global change.\n\nIt aims to coordinate, across the Mediterranean Basin, interdisciplinary research on atmosphere, hydrosphere, lithosphere and paleo-climate, including environmental ecology and social sciences. The objective is to achieve a better understanding of the mechanisms shaping and influencing landscape, environment and human impact of this eco-region.",
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"doi": "10.17616/R3Z92B",
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"homepage": "https://mistrals.sedoo.fr/en/homepage/",
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"name": "MISTRALS database",
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},
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"r3d100011941": {
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"description": "Estonian Language Data Infrastructure (Keeleandmete Teadustaristu - KeTa) is a research infrastructure that supports R&D activities that use language data. It provides services for collecting, preserving, making accessible, and reusing Estonian language data both as datasets and through various digital tools. KeTa's mission is to offer a comprehensive infrastructure and services that meet the demands and challenges of the fields of linguistics and language technology. KeTa brings together the resources of Estonian universities, research and development institutions, and other organizations related to linguistics to support and promote the use and development of language technology. KeTa plays a crucial role in aggregating high-quality language datasets for the development and evaluation of large language models.",
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"doi": "10.17616/R3P636",
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"homepage": "https://
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"homepage": "https://metashare.ut.ee/",
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"license": "CC",
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"name": "Estonian Language Data Infrastructure",
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"synonyms": [
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"description": "LinguRep
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"description": "LinguRep by the Research Center Deutscher Sprachatlas (DSA) at Marburg University is a specialist repository as it is specifically made to be a disciplinary repository for variationist linguistics, with a particular focus on German dialectology and sociolinguistics, geolinguistics and historical linguistics, but extending beyond this to encompass the entire field of areally oriented language variation research. Accordingly, the repository is designed to accommodate data from all categories and domains of language variation, encompassing both complex linguistic datasets and simpler collections of text, image, video, and audio materials.",
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"doi": "10.17616/R31NJNRH",
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"homepage": "https://lingurep.dsa.info",
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"name": "LinguRep",
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"synonyms": [
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"TSIS"
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"description": "The RAKIP-Web Model Repository is a specialized, web-based repository for sharing and discovering computational models used in food safety risk assessment. Hosted by the German Federal Institute for Risk Assessment (BfR), it serves as the central platform for the RAKIP (Risk Assessment Modelling and Knowledge Integration Platform) initiative. Its core purpose is to foster transparency, reproducibility, and reuse in predictive microbiology and chemical exposure assessment by providing a curated, standardized collection of models. The repository primarily hosts models that comply with the international FSKX (Food Safety Knowledge Markup Language) standard, ensuring they are interoperable and executable with compatible software tools like FSK-Lab. It features a public area for discovering models and a protected area for submission and curation, governed by a formal curation policy to maintain quality and standardization.",
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"doi": "10.17616/R31NJNVK",
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"homepage": "https://knime.bfr.berlin/landingpage/RAKIP-Model-Repository",
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"license": "other",
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"name": "RAKIP-Web Model Repository",
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"prefix": "r3d100014752"
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"description": "The Hidrográfico+ is a marine geospatial data infrastructure created to facilitate access to data produced by the Instituto Hidrográfico, promoting the blue economy and contributing to ocean science and sustainability. The Hydrographic+ is maintained by the Instituto Hidrográfico, the Portuguese Hydrographic Office, which undertakes research, analysis, and knowledge dissemination in the fields of marine sciences and technologies, alongside its responsibilities as the national hydrographic authority. In this way, the infrastructure supports a broad spectrum of scientific research with diverse technical applications.\nHydrographic+ provides organized and interoperable access to marine datasets, including hydrography, oceanography, marine chemistry, marine geology, and navigation. All data and services are accompanied by metadata records describing data access links and conditions of use.",
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"doi": "10.17616/R31NJNVM",
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"homepage": "https://metadata.hidrografico.pt/",
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"license": "CC",
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"name": "Hidrográfico+",
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"prefix": "r3d100014754"
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"description": "Gutenberg Open Science is the institutional repository of Johannes Gutenberg University Mainz, focusing on publications as well as research data.",
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"doi": "10.17616/R31NJNVP",
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"homepage": "https://openscience.ub.uni-mainz.de/home",
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"name": "Gutenberg Open Science",
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"prefix": "r3d100014757"
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"description": "The SEDOO is the data center of the Observatoire Midi-Pyrénées, supporting its entire scientific scope.\nIt serves Earth and environmental science communities by providing long-term data stewardship, FAIR-compliant data management, and sustainable digital services.\nSEDOO supports local, national, and international scientific projects throughout the full data lifecycle, from data acquisition and processing to dissemination, preservation, and reuse.",
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"doi": "10.17616/R31NJNVQ",
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"homepage": "https://www.sedoo.fr/",
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"Service de données de l'Observatoire Midi-Pyrénées"
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"description": "ZB MED Digital Long-Term Archive preserves digital objects in ZB MED’s holdings, which contain open access publications, digitized material and eJournals and eBooks licensed by ZB MED. All digital material covers topics from subject area life sciences and is accessible by various representation platforms at ZB MED. ZB MED has assumed responsibility for the long-term preservation and availability of digital materials it collects, as well as their interpretability by relevant target groups. As such, it has committed itself to maintain necessary infrastructure and provide necessary material and human resources. Research data is accessible at ZB MED via https://www.re3data.org/repository/r3d100013523 https://repository.publisso.de/resource?query[0][term]=%22Forschungsdaten%22 and is automatically transferred from the repository into ZB MED Digital Long-Term Archive.",
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"doi": "10.17616/R31NJNVT",
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"name": "ZB MED Digital Long-Term Archive",
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"description": "MyRiceBase is a curated biological database, which aims to centralise genomics and transcriptomics information for rice quality traits, particularly amylose and antioxidants. To date, MyRiceBase consists of single nucleotide polymorphisms (SNP), genes and biological networks that are available for the user to search, browse or download this information. Putative panel SNPs from the genome and expressed genes, panel SNPs of pigmented rice varieties, annotated SNPs, and co-expressed genes can be retrieved using search and filter functions. A search query can be done based on SNP ID, gene ID and variety name. MyRiceBase also provides Tableau and Neo4j for visualisation. This repository serves to aid basic, translational and applied research, towards the improvement of quality traits in rice varieties.",
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"homepage": "http://myricebase.mardi.gov.my/",
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bioregistry/version.py
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Name: bioregistry
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Version: 0.13.18
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Summary: Integrated registry of biological databases and nomenclatures
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Keywords: snekpack,cookiecutter,databases,biological databases,biomedical databases,persistent identifiers
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Author: Charles Tapley Hoyt
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Maintainer-email: Charles Tapley Hoyt <cthoyt@gmail.com>
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Project-URL: Bug Tracker, https://github.com/biopragmatics/bioregistry/issues
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Project-URL: Homepage, https://github.com/biopragmatics/bioregistry
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