bioregistry 0.13.16__py3-none-any.whl → 0.13.18__py3-none-any.whl

bioregistry/data/bioregistry.json

@@ -1485,7 +1485,7 @@
   "aeo": {
     "aberowl": {
       "description": "AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology",
-      "download_owl": "http://aber-owl.net/media/ontologies/AEO/8/aeo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/AEO/9/aeo.owl",
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
       "name": "Anatomical Entity Ontology",
       "prefix": "AEO"
@@ -1572,7 +1572,9 @@
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology/",
       "name": "Anatomical Entity Ontology",
       "prefix": "aeo",
-      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
+      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
+      "version": "2022-09-13",
+      "version.iri": "http://purl.obolibrary.org/obo/aeo/releases/2022-09-13/aeo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -1810,12 +1812,13 @@
       },
       "description": "<p><strong>Allotrope Merged Ontology Suite</strong></p> <p>The AFO is an ontology suite that provides a standard vocabulary and semantic model for the representation of laboratory analytical processes. The AFO suite is aligned at the upper layer to the Basic Formal Ontology (BFO). The core domains modeled include: Equipment, Material, Process, and Results.</p> <p>license: http://purl.allotrope.org/voc/creative-commons-attribution-license<br/> rights: http://purl.allotrope.org/voc/copyright<br/></p>",
       "homepage": "http://purl.allotrope.org",
+      "license": "http://purl.allotrope.org/voc/copyright",
       "name": "Allotrope Merged Ontology Suite",
       "prefix": "AFO",
       "publications": [
         "http://www.allotrope.org"
       ],
-      "version": "REC/2025/06"
+      "version": "REC/2025/12"
     },
     "fairsharing": {
       "abbreviation": "AFO",
@@ -4141,7 +4144,7 @@
       "license": "CC-BY-4.0",
       "name": "Ascomycete Phenotype Ontology",
       "prefix": "APO",
-      "version": "2025-11-10"
+      "version": "2025-12-19"
     },
     "contributor_extras": [
       {
@@ -4229,8 +4232,8 @@
       "name": "Ascomycete Phenotype Ontology (APO)",
       "prefix": "apo",
       "tracker": "https://github.com/obophenotype/ascomycete-phenotype-ontology/issues",
-      "version": "2025-12-19",
-      "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2025-12-19/apo.owl"
+      "version": "2026-01-12",
+      "version.iri": "http://purl.obolibrary.org/obo/apo/releases/2026-01-12/apo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -6895,7 +6898,7 @@
         "protein",
         "target"
       ],
-      "homepage": "http://bioassayontology.org",
+      "homepage": "http://bioassayontology.org/bioassayontology/",
       "license": "CC-BY-4.0",
       "name": "BioAssay Ontology",
       "prefix": "FAIRsharing.mye76w",
@@ -7276,6 +7279,7 @@
     },
     "ols": {
       "description": "An application ontology built for beta cell genomics studies.",
+      "download_owl": "http://purl.obolibrary.org/obo/bcgo.owl",
       "homepage": "https://github.com/obi-bcgo/bcgo",
       "name": "Beta Cell Genomics Ontology",
       "prefix": "bcgo",
@@ -8001,10 +8005,10 @@
         "email": "jhc@lbl.gov",
         "name": "Harry Caufield"
       },
-      "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None",
+      "description": "The Biological and Environmental Research Variable Ontology (BERVO) is a model of the experimental variables, conditions, and concepts used in the study of environmental research, including studies in earth science, plant science, and geochemistry. , None, \"An ontology of variables for earth system simulation, partially derived from the EcoSIM framework.\"",
       "name": "The Biological and Environmental Research Variable Ontology",
       "prefix": "BERVO",
-      "version": "2025-11-07"
+      "version": "2025-12-22"
     },
     "contributor": {
       "email": "cthoyt@gmail.com",
@@ -9644,7 +9648,7 @@
       "license": "CC0-1.0",
       "name": "Biolink Model",
       "prefix": "BIOLINK",
-      "version": "4.3.4"
+      "version": "4.3.6"
     },
     "contact": {
       "email": "cjmungall@lbl.gov",
@@ -13720,6 +13724,7 @@
     },
     "ols": {
       "description": "The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new anatomy ontologies.",
+      "download_owl": "http://purl.obolibrary.org/obo/caro.owl",
       "homepage": "https://github.com/obophenotype/caro/",
       "name": "Common Anatomy Reference Ontology",
       "prefix": "caro",
@@ -15707,7 +15712,7 @@
     "re3data": {
       "description": "This library is a public and easily accessible resource database of images, videos, and animations of cells, capturing a wide diversity of organisms, cell types, and cellular processes. The Cell Image Library has been merged with \"Cell Centered Database\" in 2017. The purpose of the database is to advance research on cellular activity, with the ultimate goal of improving human health.",
       "doi": "10.17616/R3Z59M",
-      "homepage": "http://www.cellimagelibrary.org/home",
+      "homepage": "https://www.cellimagelibrary.org/home",
       "name": "Cell Image Library",
       "prefix": "r3d100000023",
       "synonyms": [
@@ -16746,7 +16751,7 @@
   "chebi": {
     "aberowl": {
       "description": "A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds.",
-      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/209/chebi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/CHEBI/210/chebi.owl",
       "homepage": "http://www.ebi.ac.uk/chebi",
       "name": "Chemical Entities of Biological Interest",
       "prefix": "CHEBI"
@@ -16772,7 +16777,7 @@
       "name": "Chemical Entities of Biological Interest Ontology",
       "prefix": "CHEBI",
       "repository": "https://github.com/ebi-chebi/ChEBI",
-      "version": "246.0"
+      "version": "248.0"
     },
     "cellosaurus": {
       "category": "Chemistry resources",
@@ -16996,7 +17001,7 @@
       "name": "Chemical Entities of Biological Interest",
       "prefix": "chebi",
       "tracker": "https://github.com/ebi-chebi/ChEBI/issues",
-      "version": "247"
+      "version": "248"
     },
     "ontobee": {
       "library": "Foundry",
@@ -19092,7 +19097,7 @@
     "example": "E1",
     "fairsharing": {
       "abbreviation": "CIDOC-CRM",
-      "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The overall scope of the CIDOC CRM can be summarised in simple terms as the curated, factual knowledge\nabout the past at a human scale. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives. The ISO 21127:2014 specification (Information and documentation — A reference ontology for the interchange of cultural heritage information) was created from the CIDOC CRM, although the CIDOC CRM Special Interest Group continues to maintain this original document as well.",
+      "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The overall scope of the CIDOC CRM can be summarised in simple terms as the curated, factual knowledge\nabout the past at a human scale. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives. The ISO 21127:2023 (Information and documentation — A reference ontology for the interchange of cultural heritage information) was created from the CIDOC CRM, although the CIDOC CRM Special Interest Group continues to maintain this original document as well.",
       "homepage": "https://www.cidoc-crm.org/",
       "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBZUk9IiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--057a21005e538cb21742ec8a475bf44a6228c707/cidoc.png?disposition=inline",
       "name": "CIDOC Conceptual Reference Model",
@@ -19794,7 +19799,7 @@
       "publications": [
         "https://www.ncbi.nlm.nih.gov/pubmed/27377652"
       ],
-      "version": "2025-11-25"
+      "version": "2025-12-17"
     },
     "cellosaurus": {
       "category": "Anatomy/cell type resources",
@@ -21134,8 +21139,8 @@
       "name": "Clinical measurement ontology",
       "prefix": "cmo",
       "tracker": "https://github.com/rat-genome-database/CMO-Clinical-Measurement-Ontology/issues",
-      "version": "2.260",
-      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.260/cmo.owl"
+      "version": "2.261",
+      "version.iri": "http://purl.obolibrary.org/obo/cmo/2.261/cmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -23589,7 +23594,7 @@
       "license": "CC0-1.0",
       "name": "Core Ontology for Biology and Biomedicine",
       "prefix": "COB",
-      "version": "2025-06-30"
+      "version": "2025-12-12"
     },
     "domain": "classification",
     "example": "0000080",
@@ -31047,7 +31052,7 @@
       "domains": [
         "disease"
       ],
-      "homepage": "http://bioportal.bioontology.org/ontologies/DERMO",
+      "homepage": "https://github.com/dermatology-ontology/dermatology",
       "name": "Human Dermatological Disease Ontology",
       "prefix": "FAIRsharing.k008w7",
       "publications": [
@@ -33250,7 +33255,7 @@
       "publications": [
         "https://disease-ontology.org/community/publications"
       ],
-      "version": "2025-11-25"
+      "version": "2025-12-23"
     },
     "download_json": "http://purl.obolibrary.org/obo/doid.json",
     "download_obo": "https://github.com/DiseaseOntology/HumanDiseaseOntology/raw/main/src/ontology/doid.obo",
@@ -33484,8 +33489,8 @@
       "name": "Human Disease Ontology",
       "prefix": "doid",
       "tracker": "https://github.com/DiseaseOntology/HumanDiseaseOntology/issues",
-      "version": "2025-11-25",
-      "version.iri": "http://purl.obolibrary.org/obo/doid/releases/2025-11-25/translations/doid-international.owl"
+      "version": "2025-12-23",
+      "version.iri": "http://purl.obolibrary.org/obo/doid/releases/2025-12-23/translations/doid-international.owl"
     },
     "ontobee": {
       "library": "Foundry",
@@ -34109,8 +34114,8 @@
       "name": "Drosophila Phenotype Ontology",
       "prefix": "dpo",
       "tracker": "https://github.com/FlyBase/drosophila-phenotype-ontology/issues",
-      "version": "2025-10-17",
-      "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2025-10-17/dpo.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/dpo/releases/2026-01-13/dpo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -34695,7 +34700,7 @@
       "license": "CC-BY-3.0",
       "name": "The Drug Ontology",
       "prefix": "DRON",
-      "version": "2025-11-20"
+      "version": "2025-12-19"
     },
     "download_json": "http://purl.obolibrary.org/obo/dron.json",
     "download_obo": "http://purl.obolibrary.org/obo/dron.obo",
@@ -36993,7 +36998,7 @@
   "eco": {
     "aberowl": {
       "description": "An ontology for experimental and other evidence statements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/ECO/115/eco.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/ECO/116/eco.owl",
       "homepage": "https://www.evidenceontology.org",
       "name": "Evidence and Conclusion Ontology",
       "prefix": "ECO"
@@ -37164,8 +37169,8 @@
       "name": "Evidence & Conclusion Ontology (ECO)",
       "prefix": "eco",
       "tracker": "https://github.com/evidenceontology/evidenceontology/issues",
-      "version": "2025-06-23",
-      "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2025-06-23/eco.owl"
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/eco/releases/2026-01-09/eco.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -38514,7 +38519,7 @@
       "name": "Experimental Factor Ontology",
       "prefix": "EFO",
       "repository": "https://github.com/EBISPOT/efo",
-      "version": "3.85.0"
+      "version": "3.86.0"
     },
     "biocontext": {
       "prefix": "EFO"
@@ -38530,11 +38535,11 @@
         "email": "efo-users@ebi.ac.uk",
         "name": "EFO User List"
       },
-      "description": "The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and Open Targets. The ontology has been developed to increase the richness of the annotations that are currently made in resources and to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology pulls together classes from reference ontologies such as disease, cell line, cell type and anatomy and adds axiomatisation as necessary to connect areas such as disease to phenotype. Contact EFO users list for information: efo-users@ebi.ac.uk.",
+      "description": "The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and Open Targets. The ontology has been developed to increase the richness of the annotations that are currently made in resources and to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology pulls together classes from reference ontologies such as disease, cell line, cell type and anatomy and adds axiomatisation as necessary to connect areas such as disease to phenotype. Contact EFO users list for information: efo-users@ebi.ac.uk., The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases, and for projects such as the NHGRI-EBI GWAS catalog. It combines parts of several biological ontologies, such as UBERON anatomy, ChEBI chemical compounds, Cell Ontology and the Monarch Disease Ontology (MONDO). The scope of EFO is to support the annotation, analysis and visualization of data handled by many groups at the EBI and as the core ontology for Open Targets.",
       "homepage": "http://www.ebi.ac.uk/efo",
       "name": "Experimental Factor Ontology",
       "prefix": "EFO",
-      "version": "3.84.0"
+      "version": "3.85.0"
     },
     "cellosaurus": {
       "category": "Experimental variables resources",
@@ -39114,8 +39119,8 @@
   "ehdaa2": {
     "aberowl": {
       "description": "A structured controlled vocabulary of stage-specific anatomical structures of the developing human.",
-      "download_owl": "http://aber-owl.net/media/ontologies/EHDAA2/33/ehdaa2.owl",
-      "homepage": "http://genex.hgu.mrc.ac.uk/",
+      "download_owl": "http://aber-owl.net/media/ontologies/EHDAA2/34/ehdaa2.owl",
+      "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
       "name": "Human developmental anatomy, abstract",
       "prefix": "EHDAA2"
     },
@@ -39199,7 +39204,9 @@
       "homepage": "https://github.com/obophenotype/human-developmental-anatomy-ontology",
       "name": "Human developmental anatomy, abstract",
       "prefix": "ehdaa2",
-      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues"
+      "tracker": "https://github.com/obophenotype/human-developmental-anatomy-ontology/issues",
+      "version": "2024-01-11",
+      "version.iri": "http://purl.obolibrary.org/obo/ehdaa2/releases/2024-01-11/ehdaa2.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -39461,11 +39468,10 @@
     },
     "ols": {
       "description": "A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus).",
+      "download_owl": "http://purl.obolibrary.org/obo/emap.owl",
       "homepage": "http://emouseatlas.org",
       "name": "Mouse gross anatomy and development, timed",
-      "prefix": "emap",
-      "version": "2020-04-13",
-      "version.iri": "http://purl.obolibrary.org/obo/emap/releases/2020-04-13/emap.owl"
+      "prefix": "emap"
     },
     "pattern": "^\\d+$",
     "prefixcommons": {
@@ -39487,7 +39493,7 @@
   "emapa": {
     "aberowl": {
       "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
-      "download_owl": "http://aber-owl.net/media/ontologies/EMAPA/24/emapa.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/EMAPA/25/emapa.owl",
       "homepage": "http://www.informatics.jax.org/expression.shtml",
       "name": "Mouse Developmental Anatomy Ontology",
       "prefix": "EMAPA"
@@ -39592,7 +39598,7 @@
           "title": "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)"
         }
       ],
-      "repository": "https://github.com/obophenotype/mouse-anatomy-ontology"
+      "repository": "https://github.com/obophenotype/developmental-mouse-anatomy-ontology"
     },
     "ols": {
       "description": "An ontology for mouse anatomy covering embryonic development and postnatal stages.",
@@ -39601,8 +39607,8 @@
       "name": "Mouse Developmental Anatomy Ontology",
       "prefix": "emapa",
       "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
-      "version": "2023-11-14",
-      "version.iri": "http://purl.obolibrary.org/obo/emapa/releases/2023-11-14/emapa.owl"
+      "version": "2025-12-30",
+      "version.iri": "http://purl.obolibrary.org/obo/emapa/releases/2025-12-30/emapa.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -44401,7 +44407,7 @@
       "license": "CC0-1.0",
       "name": "European Viral Outbreak Response Alliance Ontology",
       "prefix": "EVORAO",
-      "version": "1.0.10769"
+      "version": "1.0.10806"
     },
     "description": "The EVORAO Ontology provides a structured and harmonized vocabulary for describing shareable pathogens as characterized biological materials, along with their derived products and associated services, organized into collections. Developed within the EVORA project, it supports consistent metadata annotation across research infrastructures, promoting findability, accessibility, interoperability, and reusability (FAIR). By aligning with relevant standards and ontologies, EVORAO facilitates cross-domain collaboration, integration, and sharing of pathogenic resources and services to enhance pandemic preparedness and response. While initially focused on virology, EVORAO is designed to be extensible and also supports metadata harmonization for other pathogens. [from repository]",
     "example": "AlternateName",
@@ -45647,8 +45653,8 @@
       "name": "Drosophila gross anatomy",
       "prefix": "fbbt",
       "tracker": "http://purl.obolibrary.org/obo/fbbt/tracker",
-      "version": "2025-10-16",
-      "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2025-10-16/fbbt.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/fbbt/releases/2026-01-13/fbbt.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -45802,8 +45808,8 @@
       "name": "FlyBase Controlled Vocabulary",
       "prefix": "fbcv",
       "tracker": "https://github.com/FlyBase/flybase-controlled-vocabulary/issues",
-      "version": "2025-10-17",
-      "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2025-10-17/fbcv.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/fbcv/releases/2026-01-13/fbcv.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -45929,8 +45935,8 @@
       "name": "Drosophila development",
       "prefix": "fbdv",
       "tracker": "http://purl.obolibrary.org/obo/fbdv/tracker",
-      "version": "2025-10-16",
-      "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2025-10-16/fbdv.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/fbdv/releases/2026-01-13/fbdv.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -48212,7 +48218,7 @@
   "foodon": {
     "aberowl": {
       "description": "A broadly scoped ontology representing entities which bear a “food role”. It encompasses materials in natural ecosystems and agriculture that are consumed by humans and domesticated animals. This includes any generic (unbranded) raw or processed food material found in processing plants, markets, stores or food distribution points. FoodOn also imports nutritional component and dietary pattern terms from other OBO Foundry ontologies to support interoperability in diet and nutrition research",
-      "download_owl": "http://aber-owl.net/media/ontologies/FOODON/90/foodon.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/FOODON/91/foodon.owl",
       "homepage": "https://foodon.org/",
       "name": "Food Ontology",
       "prefix": "FOODON"
@@ -48239,14 +48245,15 @@
         "email": "damion_dooley@sfu.ca",
         "name": "Damion Dooley"
       },
-      "description": "FoodOn is an ontology built to represent entities which bear a “food role” and is initially focused on categorizing and processing of food for humans. We aim to develop semantics for food safety, food security, the agricultural and animal husbandry practices linked to food production, culinary, nutritional and chemical ingredients and processes. FoodOn belongs to the OBOFoundry.org family of ontologies.",
+      "description": "FoodOn is an ontology built to represent entities which bear a “food role” and is initially focused on categorizing and processing of food for humans. We aim to develop semantics for food safety, food security, the agricultural and animal husbandry practices linked to food production, culinary, nutritional and chemical ingredients and processes. FoodOn belongs to the OBOFoundry.org family of ontologies., FoodOn is a consortium-driven project to build a comprehensive and easily accessible global farm-to-fork ontology about food, that accurately and consistently describes foods commonly known in cultures from around the world. See https://foodon.org for more details.",
       "homepage": "http://foodon.org",
+      "license": "CC-BY-4.0",
       "name": "The FoodOn Food Ontology",
       "prefix": "FOODON",
       "publications": [
         "https://www.nature.com/articles/s41538-018-0032-6"
       ],
-      "version": "2025-06-07"
+      "version": "2025-12-30"
     },
     "download_obo": "http://purl.obolibrary.org/obo/foodon.obo",
     "fairsharing": {
@@ -48372,8 +48379,8 @@
       "name": "Food Ontology",
       "prefix": "foodon",
       "tracker": "https://github.com/FoodOntology/foodon/issues/",
-      "version": "2025-08-01",
-      "version.iri": "http://purl.obolibrary.org/obo/foodon/releases/2025-08-01/foodon.owl"
+      "version": "2025-12-30",
+      "version.iri": "http://purl.obolibrary.org/obo/foodon/releases/2025-12-30/foodon.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -58885,7 +58892,7 @@
       "name": "HUGO Gene Nomenclature Committee",
       "prefix": "hgnc",
       "uri_format": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$1",
-      "version.iri": "https://w3id.org/biopragmatics/resources/hgnc/2025-10-07/hgnc.ofn"
+      "version.iri": "https://w3id.org/biopragmatics/resources/hgnc/2026-01-06/hgnc.ofn"
     },
     "pattern": "^\\d{1,5}$",
     "prefixcommons": {
@@ -60390,7 +60397,7 @@
       "maintainer": "NCBI (National Center for Biotechnology Information)",
       "name": "HomoloGene",
       "prefix": "nbdc00101",
-      "status": "Active",
+      "status": "Closed",
       "target_keywords": [
         "Genome/Gene",
         "Protein"
@@ -60899,8 +60906,8 @@
       "name": "Human Phenotype Ontology",
       "prefix": "hp",
       "tracker": "https://github.com/obophenotype/human-phenotype-ontology/issues/",
-      "version": "2025-11-24",
-      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2025-11-24/hp-international.owl"
+      "version": "2026-01-08",
+      "version.iri": "http://purl.obolibrary.org/obo/hp/releases/2026-01-08/hp-international.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -62914,7 +62921,7 @@
         "Hospital",
         "morbidity"
       ],
-      "homepage": "https://www.cms.gov/Medicare/Coding/ICD10/2020-ICD-10-PCS",
+      "homepage": "https://www.cms.gov/medicare/coding-billing/icd-10-codes",
       "name": "International Classification of Diseases Version 10 - Procedure Coding System",
       "prefix": "FAIRsharing.85k1jm",
       "subjects": [
@@ -63923,7 +63930,6 @@
   },
   "iconclass": {
     "bartoc": {
-      "abbreviation": "ICONCLASS",
       "description": "Iconclass is a subject-specific classification system. It is a hierarchically ordered collection of definitions of objects, people, events and abstract ideas that serve as the subject of an image. Art historians, researchers and curators use it to describe, classify and examine the subject of images represented in various media such as paintings, drawings and photographs. Numerous institutions across the world use Iconclass to describe and classify their collections in a standardized manner. In turn, users ranging from art historians to museum visitors use Iconclass to search and retrieve images from these collections. And as a research tool, Iconclass is also used to identify the significance of entire scenes or individual elements represented within an image. ICONCLASS applications used around the world have made it the most widely accepted classification system for visual documents. The three main components of Iconclass are: Classification System: 28,000 hierarchically ordered definitions divided into ten main divisions. Each definition consists of an alphanumeric classification code (notation) and the description of the iconographic subject (textual correlate). The definitions are used to index, catalogue and describe the subjects of images represented in works of art, reproductions, photographs and other sources. Alphabetical Index: 14,000 keywords used for locating the notation and its textual correlate needed to describe and/or index an image. Bibliography: 40,000 references to books and articles of iconographical interest (not yet online).",
       "homepage": "https://iconclass.org/",
       "license": "ODBL",
@@ -73974,12 +73980,38 @@
       ],
       "twitter": "lipidmaps"
     },
+    "integbio": {
+      "description": "LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and database that provides access to a large number of globally used lipidomics resources. LIPID MAPS® has internationally led the field of lipid curation, classification, and nomenclature since 2003. We strive to produce new open-access databases, informatics tools and lipidomics-focused training activities will be generated and made publicly available for researchers studying lipids in health and disease. LIPID MAPS® is currently funded by a multi-institutional grant from Wellcome, held jointly by Cardiff University, University of California San Diego, the Babraham Institute Cambridge, and Swansea University, as well as an Innovation Study funded by ELIXIR. This current phase will see that LIPID MAPS® is maintained and importantly, further developed in line with the global demand and development of lipidomics. LIPID MAPS® has an internationally recognized classification system and the largest curated lipid structure database in the world.",
+      "homepage": "https://www.lipidmaps.org/",
+      "information_keywords": [
+        "Ontology/Terminology/Nomenclature",
+        "Chemical structure",
+        "Interaction/Pathway",
+        "Classification"
+      ],
+      "maintainer": "BBSRC Babraham Institute||Cardiff University",
+      "name": "LIPID MAPS",
+      "prefix": "nbdc02669",
+      "pubmeds": [
+        "37855672",
+        "17584797",
+        "17098933",
+        "37855672",
+        "33564392",
+        "16381922"
+      ],
+      "status": "Active",
+      "target_keywords": [
+        "Lipid"
+      ]
+    },
     "logo": "https://www.lipidmaps.org/assets/images/logos/lipid_maps_transparent_sm.png",
     "mappings": {
       "biocontext": "LIPIDMAPS",
       "cheminf": "000564",
       "edam": "2625",
       "fairsharing": "FAIRsharing.cpneh8",
+      "integbio": "nbdc02669",
       "miriam": "lipidmaps",
       "n2t": "lipidmaps",
       "ols": "lipidmaps",
@@ -75211,7 +75243,7 @@
   "ma": {
     "aberowl": {
       "description": "A structured controlled vocabulary of the adult anatomy of the mouse (Mus).",
-      "download_owl": "http://aber-owl.net/media/ontologies/MA/127/ma.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MA/128/ma.owl",
       "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
       "name": "Mouse adult gross anatomy",
       "prefix": "MA"
@@ -75328,7 +75360,9 @@
       "homepage": "https://github.com/obophenotype/mouse-anatomy-ontology",
       "name": "Mouse adult gross anatomy",
       "prefix": "ma",
-      "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues"
+      "tracker": "https://github.com/obophenotype/mouse-anatomy-ontology/issues",
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/ma/releases/2026-01-09/ma.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -75960,7 +75994,7 @@
     "integbio": {
       "alt_name": "High Resolution Mass Spectral Database",
       "description": "MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was developed by the Institute for Advanced Biosciences, Keio University (IAB) Analytical Chemistry Group, and the RIKEN Plant Science Center (PSC) Metabolomics Research Group. MassBank is used to search chemical compounds that have been detected by mass spectrometry for chemical identification, structure detail, similar spectrum search, etc. MassBank was recognized as the official mass spectral database of the Mass Spectrometry Society of Japan in 2008. It also contains the results of the NEDO project.",
-      "homepage": "http://www.massbank.jp/Index",
+      "homepage": "https://massbank.jp/MassBank/",
       "information_keywords": [
         "Method",
         "Chemical structure"
@@ -76813,7 +76847,7 @@
       },
       "description": "An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for the public and consumers., An ontology representing the model card structure",
       "homepage": "https://github.com/UTHealth-Ontology/MCRO",
-      "license": "CC-BY-3.0",
+      "license": "CC-BY-4.0",
       "name": "Model Card Report Ontology",
       "prefix": "MCRO",
       "version": "2023-03-07"
@@ -78930,6 +78964,24 @@
       "prefix": "METPO",
       "version": "2025-12-12"
     },
+    "biolink": {
+      "is_identifiers": false,
+      "is_obo": false,
+      "prefix": "METPO",
+      "uri_format": "https://w3id.org/metpo/$1"
+    },
+    "bioportal": {
+      "contact": {
+        "email": "mam@lbl.gov",
+        "name": "Mark Andrew Miller"
+      },
+      "description": "An ontology of ecophysiological traits of microbes, including tolerated and preferred growth conditions, Microbial ecophysiological trait and phenotype ontology",
+      "homepage": "https://github.com/berkeleybop/metpo",
+      "license": "CC-BY-4.0",
+      "name": "METPO",
+      "prefix": "METPO",
+      "version": "2025-12-12"
+    },
     "contact": {
       "email": "mam@lbl.gov",
       "github": "turbomam",
@@ -78955,7 +79007,9 @@
       "phenotypes"
     ],
     "mappings": {
-      "aberowl": "METPO"
+      "aberowl": "METPO",
+      "biolink": "METPO",
+      "bioportal": "METPO"
     },
     "name": "Microbial Ecophysiological Trait and Phenotype Ontology",
     "owners": [
@@ -82604,7 +82658,7 @@
   "mmo": {
     "aberowl": {
       "description": "A representation of the variety of methods used to make clinical and phenotype measurements.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MMO/119/mmo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MMO/120/mmo.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
       "name": "Measurement method ontology",
       "prefix": "MMO"
@@ -82640,6 +82694,7 @@
         "phenotype"
       ],
       "homepage": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
+      "license": "CC0-1.0",
       "name": "Measurement Method Ontology",
       "prefix": "FAIRsharing.bgkyd7",
       "publications": [
@@ -82656,6 +82711,7 @@
           "year": 2013
         }
       ],
+      "repository": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology",
       "subjects": [
         "Life Science",
         "Preclinical Studies",
@@ -82709,8 +82765,8 @@
       "name": "Measurement method ontology",
       "prefix": "mmo",
       "tracker": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology/issues",
-      "version": "2.168",
-      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.168/mmo.owl"
+      "version": "2.169",
+      "version.iri": "http://purl.obolibrary.org/obo/mmo/2.169/mmo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -84150,7 +84206,7 @@
   "mondo": {
     "aberowl": {
       "description": "A global community effort to harmonize multiple disease resources to yield a coherent merged ontology.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/108/mondo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MONDO/109/mondo.owl",
       "homepage": "https://monarch-initiative.github.io/mondo",
       "name": "Mondo Disease Ontology",
       "prefix": "MONDO"
@@ -84179,7 +84235,7 @@
       "publications": [
         "https://mondo.monarchinitiative.org/pages/resources/"
       ],
-      "version": "2025-11-04"
+      "version": "2026-01-06"
     },
     "download_obo": "http://purl.obolibrary.org/obo/mondo.obo",
     "example": "0000001",
@@ -84299,8 +84355,8 @@
       "name": "Mondo Disease Ontology",
       "prefix": "mondo",
       "tracker": "https://github.com/monarch-initiative/mondo/issues",
-      "version": "2025-12-02",
-      "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2025-12-02/mondo-international.owl"
+      "version": "2026-01-06",
+      "version.iri": "http://purl.obolibrary.org/obo/mondo/releases/2026-01-06/mondo-international.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -84586,7 +84642,7 @@
       "homepage": "http://www.informatics.jax.org/searches/MP_form.shtml",
       "name": "Mammalian Phenotype Ontology",
       "prefix": "MP",
-      "version": "2025-11-19"
+      "version": "2025-12-18"
     },
     "fairsharing": {
       "abbreviation": "MP",
@@ -85198,8 +85254,8 @@
       "name": "MHC Restriction Ontology",
       "prefix": "mro",
       "tracker": "https://github.com/IEDB/MRO/issues",
-      "version": "2025-10-29",
-      "version.iri": "http://purl.obolibrary.org/obo/mro/2025-10-29/mro.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/mro/2026-01-13/mro.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -85221,7 +85277,7 @@
   "ms": {
     "aberowl": {
       "description": "A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry.",
-      "download_owl": "http://aber-owl.net/media/ontologies/MS/228/ms.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/MS/229/ms.owl",
       "homepage": "http://www.psidev.info/groups/controlled-vocabularies",
       "name": "Mass spectrometry ontology",
       "prefix": "MS"
@@ -85314,8 +85370,8 @@
       "name": "Mass spectrometry ontology",
       "prefix": "ms",
       "tracker": "https://github.com/HUPO-PSI/psi-ms-CV/issues",
-      "version": "4.1.223",
-      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.223/ms.owl"
+      "version": "4.1.226",
+      "version.iri": "http://purl.obolibrary.org/obo/ms/4.1.226/ms.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -87938,16 +87994,14 @@
     },
     "agroportal": {
       "contact": {
-        "email": "info@ncbi.nlm.nih.gov",
-        "name": "NCBI information"
+        "email": "mohamed-el-amine.boukerfa@inrae.fr",
+        "name": "LOV_migration"
       },
-      "description": "The NCBI Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases. This currently represents about 10% of the described species of life on the planet.",
-      "example_uri": "http://purl.bioontology.org/ontology/NCBITAXON/201174",
-      "homepage": "https://www.ncbi.nlm.nih.gov/",
-      "name": "National Center for Biotechnology Information (NCBI) Organismal Classification",
-      "prefix": "NCBITAXON",
-      "repository": "https://github.com/obophenotype/ncbitaxon",
-      "version": "2023ab"
+      "description": "EUdaphobase Taxonomy Ontology for the European Soil-Biology Data Warehouse for Soil Protection",
+      "license": "https://opensource.org/licenses/MIT",
+      "name": "EUTaxO - EUdaphobase Taxonomy Ontology",
+      "prefix": "TAX",
+      "version": "v2.0.0 - Changes:\nThis major version adapts the ontology to better comply with the FAIR principles.\n- Changed URI from \"https://www.eudaphobase.eu/ontologies/taxonomy\" to \"https://w3id.org/EUTaxO\"\n- Complete ontology metadata\n- Complete labels and comments for all terms\n- Remove support to parse output excel file\n- Remove all spaces from URIs"
     },
     "bartoc": {
       "description": "The NCBI Taxonomy database is a curated set of names and classifications for all of the organisms that are represented in GenBank. When new sequences are submitted to GenBank, the submission is checked for new organism names, which are then classified and added to the Taxonomy database. As of April 2003, there were 176,890 total taxa represented.\n\nThere are two main tools for viewing the information in the Taxonomy database: the Taxonomy Browser, and Taxonomy Entrez. Both systems allow searching of the Taxonomy database for names, and both link to the relevant sequence data. However, the Taxonomy Browser provides a hierarchical view of the classification (the best display for most casual users interested in exploring our classification), whereas Entrez Taxonomy provides a uniform indexing, search, and retrieval engine with a common mechanism for linking between the Taxonomy and other relevant Entrez databases.\n\nOrganismal taxonomy is a powerful organizing principle in the study of biological systems. Inheritance, homology by common descent, and the conservation of sequence and structure in the determination of function are all central ideas in biology that are directly related to the evolutionary history of any group of organisms. Because of this, taxonomy plays an important cross-linking role in many of the NCBI tools and databases.\n\nThe NCBITaxon ontology is an automatic translation of the NCBI taxonomy (a taxonomic classification of living organisms and associated artifacts) database into obo/owl.",
@@ -88005,6 +88059,7 @@
         "Taxonomic classification"
       ],
       "homepage": "https://github.com/obophenotype/ncbitaxon",
+      "license": "CC0-1.0",
       "name": "NCBI Organismal Classification",
       "prefix": "FAIRsharing.fj07xj",
       "publications": [
@@ -88056,7 +88111,7 @@
     },
     "mappings": {
       "aberowl": "NCBITAXON",
-      "agroportal": "NCBITAXON",
+      "agroportal": "TAX",
       "bartoc": "509",
       "biocontext": "TAXONOMY",
       "bioportal": "NCBITAXON",
@@ -88405,6 +88460,7 @@
       },
       "description": "Vocabulary for clinical care, translational and basic research, and public information and administrative activities.",
       "homepage": "https://ncithesaurus.nci.nih.gov/ncitbrowser/",
+      "license": "CC-BY-4.0",
       "name": "National Cancer Institute Thesaurus",
       "prefix": "NCIT",
       "version": "24.01e"
@@ -88686,7 +88742,8 @@
       "domains": [
         "ncRNA"
       ],
-      "homepage": "http://bioportal.bioontology.org/ontologies/NCRO",
+      "homepage": "https://github.com/OmniSearch/ncro",
+      "license": "CC-BY-4.0",
       "name": "Non-coding RNA Ontology",
       "prefix": "FAIRsharing.vppyga",
       "publications": [
@@ -93160,7 +93217,7 @@
   "obi": {
     "aberowl": {
       "description": "An integrated ontology for the description of life-science and clinical investigations",
-      "download_owl": "http://aber-owl.net/media/ontologies/OBI/62/obi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/OBI/63/obi.owl",
       "homepage": "http://obi-ontology.org",
       "name": "Ontology for Biomedical Investigations",
       "prefix": "OBI"
@@ -93183,7 +93240,7 @@
       "publications": [
         "http://purl.obolibrary.org/obo/obi/Technical_Reports"
       ],
-      "version": "2025-10-14"
+      "version": "2025-12-18"
     },
     "download_obo": "https://github.com/obi-ontology/obi/raw/master/views/obi.obo",
     "example": "0400109",
@@ -93334,8 +93391,8 @@
       "name": "Ontology for Biomedical Investigations",
       "prefix": "obi",
       "tracker": "http://purl.obolibrary.org/obo/obi/tracker",
-      "version": "2025-10-14",
-      "version.iri": "http://purl.obolibrary.org/obo/obi/2025-10-14/obi.owl"
+      "version": "2025-12-18",
+      "version.iri": "http://purl.obolibrary.org/obo/obi/2025-12-18/obi.owl"
     },
     "ontobee": {
       "library": "Foundry",
@@ -93441,6 +93498,11 @@
     "example": "0000389",
     "fairsharing": {
       "abbreviation": "OBIB",
+      "contact": {
+        "email": "jmwhorton@uams.edu",
+        "name": "Justin Whorton",
+        "orcid": "0009-0003-4268-6207"
+      },
       "description": "The ontology for Biobanking (OBIB) is an ontology built for annotation and modeling of biobank repository and biobanking administration. It is developed based on subset of Ontology for Biomedical Investigations (OBI) using Basic Formal Ontology (BFO) as top ontology and following OBO Foundry principles. The first version of the ontology is merged of two existing biobank related ontologies, OMIABIS and biobank ontology.",
       "domains": [
         "Biobank"
@@ -95081,7 +95143,7 @@
   "ohmi": {
     "aberowl": {
       "description": "The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to microbiomes, microbiome host organisms (e.g., human and mouse), and the interactions between the hosts and microbiomes at different conditions.",
-      "download_owl": "http://aber-owl.net/media/ontologies/OHMI/16/ohmi.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/OHMI/17/ohmi.owl",
       "homepage": "https://github.com/ohmi-ontology/ohmi",
       "name": "Ontology of Host-Microbiome Interactions",
       "prefix": "OHMI"
@@ -95096,9 +95158,10 @@
       },
       "description": "OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.",
       "homepage": "https://github.com/ohmi-ontology/ohmi",
+      "license": "CC-BY-4.0",
       "name": "Ontology of Host-Microbe Interactions",
       "prefix": "OHMI",
-      "version": "2019-09-17"
+      "version": "2025-12-28"
     },
     "example": "0000460",
     "fairsharing": {
@@ -95158,8 +95221,8 @@
       "name": "OHMI: Ontology of Host-Microbiome Interactions",
       "prefix": "ohmi",
       "tracker": "https://github.com/ohmi-ontology/ohmi/issues",
-      "version": "2019-09-17",
-      "version.iri": "http://purl.obolibrary.org/obo/ohmi/2019-09-17/ohmi.owl"
+      "version": "2025-12-28",
+      "version.iri": "http://purl.obolibrary.org/obo/ohmi/2025-12-28/ohmi.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -95914,6 +95977,7 @@
     },
     "ols": {
       "description": "An ontological version of MIABIS (Minimum Information About BIobank data Sharing)",
+      "download_owl": "http://purl.obolibrary.org/obo/omiabis.owl",
       "homepage": "https://github.com/OMIABIS/omiabis-dev",
       "name": "Ontologized MIABIS",
       "prefix": "omiabis",
@@ -96732,7 +96796,7 @@
   "omrse": {
     "aberowl": {
       "description": "The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities that arise from human social interactions, such as social acts, social roles, social groups, and organizations.",
-      "download_owl": "http://aber-owl.net/media/ontologies/OMRSE/63/omrse.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/OMRSE/64/omrse.owl",
       "homepage": "https://github.com/mcwdsi/OMRSE/wiki/OMRSE-Overview",
       "name": "Ontology for Modeling and Representation of Social Entities",
       "prefix": "OMRSE"
@@ -96833,8 +96897,8 @@
       "name": "Ontology for Modeling and Representation of Social Entities",
       "prefix": "omrse",
       "tracker": "https://github.com/mcwdsi/OMRSE/issues",
-      "version": "2025-08-13",
-      "version.iri": "http://purl.obolibrary.org/obo/omrse/releases/2025-08-13/omrse.owl"
+      "version": "2026-01-06",
+      "version.iri": "http://purl.obolibrary.org/obo/omrse/releases/2026-01-06/omrse.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -98703,7 +98767,7 @@
       "license": "CC-BY-4.0",
       "name": "Orphanet Rare Disease Ontology",
       "prefix": "ORDO",
-      "version": "4.7"
+      "version": "4.8"
     },
     "cellosaurus": {
       "category": "Medical resources",
@@ -100375,10 +100439,32 @@
       ]
     },
     "homepage": "https://pathbank.org",
+    "integbio": {
+      "description": "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.",
+      "homepage": "https://pathbank.org/",
+      "information_keywords": [
+        "Chemical structure",
+        "Interaction/Pathway",
+        "Image/Movie"
+      ],
+      "maintainer": "Wishart Research Group, University of Alberta",
+      "name": "Pathbank",
+      "prefix": "nbdc02670",
+      "pubmeds": [
+        "31602464",
+        "37962386"
+      ],
+      "status": "Active",
+      "target_keywords": [
+        "Protein",
+        "Metabolite"
+      ]
+    },
     "license": "ODbL-1.0",
     "logo": "https://pathbank.org/assets/pathbank_banner-2f8ec31838b9f453482e0748c0da1b7ebbb77b0f2b1a6e60ff1222ca0984db07.png",
     "mappings": {
       "fairsharing": "FAIRsharing.3xwMon",
+      "integbio": "nbdc02670",
       "togoid": "Pathbank"
     },
     "name": "PathBank",
@@ -102454,9 +102540,20 @@
       "publications": [
         "http://planteome.org/pub"
       ],
-      "version": "releases/2023-11-10"
+      "version": "v2025-10-30"
     },
     "download_obo": "https://raw.githubusercontent.com/Planteome/plant-experimental-conditions-ontology/master/peco.obo",
+    "ecoportal": {
+      "contact": {
+        "email": "mohamed-el-amine.boukerfa@inrae.fr",
+        "name": "LOV Migration"
+      },
+      "description": "This ontology defines a vocabulary for describing provenance traces of carbon emission calculations by capturing the quantifiable measurements of carbon emission sources used by some activities (e.g., electricity used by a machinery to produce a product, petrol used to make a car journey, etc.) and emission conversion factors used to estimate the carbon emissions produced by these. In addition, the ontology provides the ability to capture various data transformations that occurred before energy estimates may be used with relevant conversion factors. For example, sensors may provide raw readings about a water flow of an irrigation rig in an agri-food operation which is then used as a proxy to estimate the total volume of fertilisers used.",
+      "license": "CC-BY-4.0",
+      "name": "The Provenance of Emission Calculations Ontology",
+      "prefix": "PECO",
+      "version": "1.0.0"
+    },
     "example": "0007114",
     "fairsharing": {
       "abbreviation": "PECO",
@@ -102491,6 +102588,7 @@
       "agroportal": "PECO",
       "biocontext": "PECO",
       "bioportal": "PECO",
+      "ecoportal": "PECO",
       "fairsharing": "FAIRsharing.6yNXYK",
       "obofoundry": "peco",
       "ols": "peco",
@@ -103808,11 +103906,11 @@
     "pattern": "^\\d+$",
     "publications": [
       {
-        "doi": "10.1093/nar/gkae1220",
+        "doi": "10.1093/nar/gkae878",
         "pmc": "PMC11701545",
         "pubmed": "39373542",
         "title": "PhageDive: the comprehensive strain database of prokaryotic viral diversity",
-        "year": 2024
+        "year": 2025
       }
     ],
     "re3data": {
@@ -107008,8 +107106,8 @@
       "name": "Plant Ontology",
       "prefix": "po",
       "tracker": "https://github.com/Planteome/plant-ontology/issues",
-      "version": "2025-10-31",
-      "version.iri": "http://purl.obolibrary.org/obo/po/releases/2025-10-31/po.owl"
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/po/releases/2026-01-09/po.owl"
     },
     "ontobee": {
       "library": "Foundry",
@@ -107784,6 +107882,9 @@
       "license": "CC-BY-4.0",
       "name": "Plant Phenotype Experiment Ontology",
       "prefix": "PPEO",
+      "publications": [
+        "https://doi.org/10.1111/nph.16544"
+      ],
       "repository": "https://github.com/MIAPPE/MIAPPE-ontology",
       "version": "1.1-beta"
     },
@@ -110221,7 +110322,7 @@
   "pso": {
     "aberowl": {
       "description": "The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter.",
-      "download_owl": "http://aber-owl.net/media/ontologies/PSO/6/pso.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/PSO/7/pso.owl",
       "homepage": "https://github.com/Planteome/plant-stress-ontology",
       "name": "Plant Stress Ontology",
       "prefix": "PSO"
@@ -110242,7 +110343,7 @@
         "https://planteome.org/references"
       ],
       "repository": "https://github.com/Planteome/plant-stress-ontology",
-      "version": "2025-12-16"
+      "version": "2026-01-08"
     },
     "bioportal": {
       "contact": {
@@ -110315,8 +110416,8 @@
       "name": "Plant Stress Ontology",
       "prefix": "pso",
       "tracker": "https://github.com/Planteome/plant-stress-ontology/issues",
-      "version": "2025-12-16",
-      "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2025-12-16/pso.owl"
+      "version": "2026-01-08",
+      "version.iri": "http://purl.obolibrary.org/obo/pso/releases/2026-01-08/pso.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -111527,8 +111628,8 @@
       "name": "Pathway ontology",
       "prefix": "pw",
       "tracker": "https://github.com/rat-genome-database/PW-Pathway-Ontology/issues",
-      "version": "7.96",
-      "version.iri": "http://purl.obolibrary.org/obo/pw/7.96/pw.owl"
+      "version": "7.97",
+      "version.iri": "http://purl.obolibrary.org/obo/pw/7.97/pw.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -111951,7 +112052,7 @@
       "homepage": "https://www.rsna.org/practice-tools/data-tools-and-standards/radlex-radiology-lexicon",
       "name": "Radiology Lexicon",
       "prefix": "RADLEX",
-      "version": "4.2"
+      "version": "4.3"
     },
     "contributor": {
       "email": "cthoyt@gmail.com",
@@ -112268,7 +112369,7 @@
       "publications": [
         "https://doi.org/10.1080/09553002.2023.2173823"
       ],
-      "version": "2025-11-26"
+      "version": "2025-12-11"
     },
     "example": "00000105",
     "example_extras": [
@@ -114937,6 +115038,59 @@
     ],
     "uri_format": "https://www.ribocentre.org/docs/$1"
   },
+  "ribocirc": {
+    "contact": {
+      "email": "xiezhi@gmail.com",
+      "name": "Zhi Xie",
+      "orcid": "0000-0002-7736-5548"
+    },
+    "contributor": {
+      "email": "ji.kang@northeastern.edu",
+      "github": "kanghosaeyo",
+      "name": "Kangho Ji",
+      "orcid": "0009-0009-3402-8013"
+    },
+    "description": "Identifiers represent computationally predicted and experimentally verified translatable circular RNAs (circRNAs) across six model species (human, mouse, rat, worm, fly, and zebrafish), including ribosome-associated circRNAs and their encoded peptides with systematic annotation of sequence, structure, and function.",
+    "example": "hsa_ribocircSCD_001",
+    "example_extras": [
+      "mmu_ribocircCoil_001",
+      "rno_ribocircVps13b_003",
+      "dme_ribocirccdi_001",
+      "cel_ribocircF54A3.3_001",
+      "dre_ribocircim:7151449_001"
+    ],
+    "github_request_issue": 1798,
+    "homepage": "http://www.ribocirc.com",
+    "keywords": [
+      "circrna",
+      "peptides",
+      "ribosome profiling",
+      "translation"
+    ],
+    "name": "riboCIRC",
+    "pattern": "^(hsa|mmu|rno|cel|dme|dre)_ribocirc[A-Za-z0-9.:]+_\\d{3}$",
+    "publications": [
+      {
+        "doi": "10.1093/nar/gkaf1022",
+        "pubmed": "41118507",
+        "title": "riboCIRC v2.0: an expanded resource for translatable CircRNAs",
+        "year": 2025
+      },
+      {
+        "doi": "10.1186/s13059-021-02300-7",
+        "pubmed": "33685493",
+        "title": "riboCIRC: a comprehensive database of translatable circRNAs",
+        "year": 2021
+      }
+    ],
+    "reviewer": {
+      "email": "b.gyori@northeastern.edu",
+      "github": "bgyori",
+      "name": "Benjamin M. Gyori",
+      "orcid": "0000-0001-9439-5346"
+    },
+    "uri_format": "http://www.ribocirc.com/rna_detail.php?circ_id=$1"
+  },
   "ricecyc": {
     "mappings": {
       "pathguide": "227",
@@ -115295,21 +115449,25 @@
       "uri_format": "https://rnacentral.org/rna/$1"
     },
     "integbio": {
-      "alt_name": "Long Non-Coding RNA Database",
-      "description": "lncRNAdb is a database providing comprehensive annotations of long non-coding RNAs (lncRNAs) in eukaryotes. Each record contains referenced information about the RNA, including sequences, structural information, genomic context, expression, subcellular localization, conservation, functional evidence and other relevant information. lncRNAdb allows to search by querying published RNA names and aliases, sequences, species and associated protein-coding genes, as well as terms contained in the annotations, such as the tissues in which the transcripts are expressed and associated diseases. Moreover, lncRNAdb is linked to the UCSC Genome Browser for visualization and Noncoding RNA Expression Database (NRED) for expression information from a variety of sources.",
-      "homepage": "http://www.lncrnadb.com",
+      "description": "RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broad range of organisms and RNA types.",
+      "homepage": "https://rnacentral.org/",
       "information_keywords": [
         "Sequence",
-        "Bibliography/Documents"
+        "Expression",
+        "Bibliography/Documents",
+        "Portal"
       ],
-      "maintainer": "Institute for Molecular Bioscience, The University of Queensland",
-      "name": "lncRNAdb",
-      "prefix": "nbdc01215",
+      "maintainer": "European Bioinformatics Institute",
+      "name": "RNAcentral",
+      "prefix": "nbdc02671",
       "pubmeds": [
-        "21112873"
+        "30395267"
       ],
+      "status": "Active",
       "target_keywords": [
-        "RNA"
+        "Genome/Gene",
+        "RNA",
+        "Organism"
       ]
     },
     "mappings": {
@@ -115317,7 +115475,7 @@
       "edam": "3856",
       "fairsharing": "FAIRsharing.KcCjL7",
       "go": "RNAcentral",
-      "integbio": "nbdc01215",
+      "integbio": "nbdc02671",
       "miriam": "rnacentral",
       "n2t": "rnacentral",
       "ncbi": "RNAcentral",
@@ -116099,7 +116257,7 @@
       "name": "Research Organization Registry",
       "prefix": "ror",
       "uri_format": "https://ror.org/$1",
-      "version.iri": "https://w3id.org/biopragmatics/resources/ror/1.36/ror.ofn"
+      "version.iri": "https://w3id.org/biopragmatics/resources/ror/2.0/ror.ofn"
     }
   },
   "rosetta": {
@@ -116492,7 +116650,7 @@
   "rs": {
     "aberowl": {
       "description": "Ontology of rat strains",
-      "download_owl": "http://aber-owl.net/media/ontologies/RS/203/rs.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/RS/204/rs.owl",
       "homepage": "http://rgd.mcw.edu/rgdweb/search/strains.html",
       "name": "Rat Strain Ontology",
       "prefix": "RS"
@@ -116596,8 +116754,8 @@
       "name": "Rat Strain Ontology",
       "prefix": "rs",
       "tracker": "https://github.com/rat-genome-database/RS-Rat-Strain-Ontology/issues",
-      "version": "6.263",
-      "version.iri": "http://purl.obolibrary.org/obo/rs/6.263/rs.owl"
+      "version": "6.264",
+      "version.iri": "http://purl.obolibrary.org/obo/rs/6.264/rs.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -122856,7 +123014,7 @@
       "license": "CC-BY-3.0",
       "name": "Space Life Sciences Ontology",
       "prefix": "SLSO",
-      "version": "2025-09-16"
+      "version": "2025-12-11"
     },
     "download_json": "https://github.com/nasa/LSDAO/raw/refs/heads/master/slso.json",
     "example": "0000000",
@@ -126094,7 +126252,7 @@
     "description": "Identifers for natural products isolated or mutasynthesized by bacteria of the genus Streptomyces.",
     "example": "15753",
     "github_request_issue": 1287,
-    "homepage": "http://streptomedb.vm.uni-freiburg.de:8000/streptomedb",
+    "homepage": "http://streptomedb.vm.uni-freiburg.de/streptomedb",
     "name": "StreptomeDB",
     "pattern": "^\\d+$",
     "publications": [
@@ -126132,7 +126290,7 @@
       "name": "Benjamin M. Gyori",
       "orcid": "0000-0001-9439-5346"
     },
-    "uri_format": "http://streptomedb.vm.uni-freiburg.de:8000/streptomedb/get_drugcard/$1"
+    "uri_format": "http://streptomedb.vm.uni-freiburg.de/streptomedb/get_drugcard/$1"
   },
   "string": {
     "biocontext": {
@@ -134253,6 +134411,7 @@
     },
     "ols": {
       "description": "Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa",
+      "download_owl": "http://purl.obolibrary.org/obo/tao.owl",
       "homepage": "http://wiki.phenoscape.org/wiki/Teleost_Anatomy_Ontology",
       "name": "Teleost Anatomy Ontology",
       "prefix": "tao",
@@ -136099,8 +136258,8 @@
       "name": "Plant Trait Ontology",
       "prefix": "to",
       "tracker": "https://github.com/Planteome/plant-trait-ontology/issues",
-      "version": "2025-11-07",
-      "version.iri": "http://purl.obolibrary.org/obo/to/releases/2025-11-07/to.owl"
+      "version": "2026-01-14",
+      "version.iri": "http://purl.obolibrary.org/obo/to/releases/2026-01-14/to.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -140504,7 +140663,7 @@
   "uo": {
     "aberowl": {
       "description": "Metrical units for use in conjunction with PATO",
-      "download_owl": "http://aber-owl.net/media/ontologies/UO/61/uo.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/UO/62/uo.owl",
       "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
       "name": "Units of measurement ontology",
       "prefix": "UO"
@@ -140524,7 +140683,7 @@
         "https://doi.org/10.1093/database/bas033"
       ],
       "repository": "https://github.com/bio-ontology-research-group/unit-ontology",
-      "version": "2023-05-25"
+      "version": "2026-01-16"
     },
     "biocontext": {
       "prefix": "UO"
@@ -140626,6 +140785,7 @@
       "deprecated": false,
       "description": "Metrical units for use in conjunction with PATO",
       "domain": "phenotype",
+      "download.json": "http://purl.obolibrary.org/obo/uo.json",
       "download.obo": "http://purl.obolibrary.org/obo/uo.obo",
       "download.owl": "http://purl.obolibrary.org/obo/uo.owl",
       "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",
@@ -140649,8 +140809,8 @@
       "name": "Units of measurement ontology",
       "prefix": "uo",
       "tracker": "https://github.com/bio-ontology-research-group/unit-ontology/issues",
-      "version": "2023-05-25",
-      "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2023-05-25/uo.owl"
+      "version": "2026-01-09",
+      "version.iri": "http://purl.obolibrary.org/obo/uo/releases/2026-01-09/uo.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -143541,7 +143701,7 @@
       "license": "CC-BY-4.0",
       "name": "Vaccine Ontology",
       "prefix": "VO",
-      "version": "2025-11-01"
+      "version": "2025-12-03"
     },
     "example": "0000093",
     "fairsharing": {
@@ -143906,6 +144066,7 @@
     },
     "ols": {
       "description": "Vertebrate skeletal anatomy ontology.",
+      "download_owl": "http://purl.obolibrary.org/obo/vsao.owl",
       "homepage": "https://www.nescent.org/phenoscape/Main_Page",
       "name": "Vertebrate Skeletal Anatomy Ontology-",
       "prefix": "vsao",
@@ -144080,7 +144241,7 @@
   "vt": {
     "aberowl": {
       "description": "An ontology of traits covering vertebrates",
-      "download_owl": "http://aber-owl.net/media/ontologies/VT/141/vt.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/VT/142/vt.owl",
       "homepage": "https://github.com/AnimalGenome/vertebrate-trait-ontology",
       "name": "Vertebrate trait ontology",
       "prefix": "VT"
@@ -144113,8 +144274,7 @@
       "prefix": "VT",
       "publications": [
         "https://www.animalgenome.org/bioinfo/projects/vt/"
-      ],
-      "version": "2025-11-25"
+      ]
     },
     "download_obo": "https://github.com/AnimalGenome/vertebrate-trait-ontology/raw/master/current_release/vt.obo",
     "example": "0000685",
@@ -144184,8 +144344,8 @@
       "name": "The Vertebrate Trait Ontology",
       "prefix": "vt",
       "tracker": "https://github.com/AnimalGenome/vertebrate-trait-ontology/issues",
-      "version": "2025-12-02",
-      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2025-12-02/vt.owl"
+      "version": "2026-01-13",
+      "version.iri": "http://purl.obolibrary.org/obo/vt/releases/2026-01-13/vt.owl"
     },
     "ontobee": {
       "library": "Library",
@@ -144682,14 +144842,13 @@
         "name": "Gary Schindelman",
         "orcid": "0000-0001-7883-4388"
       },
-      "description": "An ontology for phenotypes pertaining to the nematode Caenorhabditis elegans (C. elegans) and related nematodes used by the nematode genome database WormBase.",
+      "description": "An ontology for phenotypes pertaining to the nematode Caenorhabditis elegans (C. elegans) and related nematodes used by the nematode genome database WormBase. The C. elegans Phenotype Ontology organizes terms representing observed and reported phenotypes of C. elegans and related nematodes into a hierarchy for the purpose of phenotype term discovery (e.g. using ontology browsers) and logical reasoning (e.g. inferring genes whose perturbation results in a more general phenotype based on annotations to more specific phenotypes). There is an ongoing effort to generate logical definitions that will formalize the relationship between each phenotype term and the biological entities (cells, tissues, cellular components, biological processes, etc.) that are affected.",
       "domains": [
-        "Data analysis",
         "phenotype"
       ],
       "homepage": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
       "license": "CC-BY-4.0",
-      "name": "C. elegans phenotype",
+      "name": "C. elegans phenotype ontology",
       "prefix": "FAIRsharing.agvc7y",
       "publications": [
         {
@@ -146743,7 +146902,7 @@
   "xco": {
     "aberowl": {
       "description": "Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.",
-      "download_owl": "http://aber-owl.net/media/ontologies/XCO/154/xco.owl",
+      "download_owl": "http://aber-owl.net/media/ontologies/XCO/155/xco.owl",
       "homepage": "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:0000000",
       "name": "Experimental condition ontology",
       "prefix": "XCO"
@@ -146852,8 +147011,8 @@
       "name": "Experimental condition ontology",
       "prefix": "xco",
       "tracker": "https://github.com/rat-genome-database/XCO-experimental-condition-ontology/issues",
-      "version": "4.221",
-      "version.iri": "http://purl.obolibrary.org/obo/xco/4.221/xco.owl"
+      "version": "4.223",
+      "version.iri": "http://purl.obolibrary.org/obo/xco/4.223/xco.owl"
     },
     "ontobee": {
       "library": "Library",