bioregistry 0.13.16__py3-none-any.whl → 0.13.18__py3-none-any.whl

bioregistry/external/fairsharing/processed.json

@@ -1869,6 +1869,13 @@
     ],
     "homepage": "http://bioportal.bioontology.org/ontologies/ONTOPSYCHIA",
     "name": "OntoPsychia, social module",
+    "publications": [
+      {
+        "pubmed": "29295236",
+        "title": "From Patient Discharge Summaries to an Ontology for Psychiatry",
+        "year": 2017
+      }
+    ],
     "subjects": [
       "Systems Medicine",
       "Medical Informatics",
@@ -3410,19 +3417,6 @@
       "Natural Science"
     ]
   },
-  "FAIRsharing.5c7cec": {
-    "abbreviation": "CESSDA Vocabulary",
-    "description": "CESSDA Vocabulary Service enables users to discover, browse, and download controlled vocabularies in a variety of languages. The service is provided by the Consortium of European Social Science Data Archives (CESSDA). The majority of the source (English) vocabularies included in the service have been created by the DDI Alliance. The Data Documentation Initiative (DDI) is an international standard for describing data produced by surveys and other observational methods in the social, behavioural, economic, and health sciences.",
-    "homepage": "https://vocabularies.cessda.eu/#!discover",
-    "name": "CESSDA Vocabulary",
-    "subjects": [
-      "Economics",
-      "Public Health",
-      "Social Science",
-      "Social and Behavioural Science"
-    ],
-    "twitter": "CESSDA_Data"
-  },
   "FAIRsharing.5cmtw3": {
     "abbreviation": "MIRNAO",
     "description": "This resource is no longer available because its underlying source material is not in scope for FAIRsharing.",
@@ -5281,7 +5275,7 @@
       "Hospital",
       "morbidity"
     ],
-    "homepage": "https://www.cms.gov/Medicare/Coding/ICD10/2020-ICD-10-PCS",
+    "homepage": "https://www.cms.gov/medicare/coding-billing/icd-10-codes",
     "name": "International Classification of Diseases Version 10 - Procedure Coding System",
     "subjects": [
       "Biomedical Science",
@@ -5404,7 +5398,7 @@
     "domains": [
       "neuron"
     ],
-    "homepage": "https://github.com/SciKnowEngine/SciDIG",
+    "homepage": "https://github.com/SciKnowEngine/SciKnowGraph",
     "name": "Neuroscience Domain Insight Graphs",
     "repository": "http://usc-isi-i2.github.io/dig/",
     "subjects": [
@@ -6424,7 +6418,7 @@
   },
   "FAIRsharing.9xcr4z": {
     "abbreviation": "CIDOC-CRM",
-    "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The overall scope of the CIDOC CRM can be summarised in simple terms as the curated, factual knowledge\nabout the past at a human scale. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives. The ISO 21127:2014 specification (Information and documentation — A reference ontology for the interchange of cultural heritage information) was created from the CIDOC CRM, although the CIDOC CRM Special Interest Group continues to maintain this original document as well.",
+    "description": "The CIDOC Conceptual Reference Model (CRM) provides definitions and a formal structure for describing the implicit and explicit concepts and relationships used in cultural heritage documentation. The overall scope of the CIDOC CRM can be summarised in simple terms as the curated, factual knowledge\nabout the past at a human scale. The CIDOC CRM is intended to promote a shared understanding of cultural heritage information by providing a common and extensible semantic framework that any cultural heritage information can be mapped to. It is intended to be a common language for domain experts and implementers to formulate requirements for information systems and to serve as a guide for good practice of conceptual modelling. In this way, it can provide the \"semantic glue\" needed to mediate between different sources of cultural heritage information, such as that published by museums, libraries and archives. The ISO 21127:2023 (Information and documentation — A reference ontology for the interchange of cultural heritage information) was created from the CIDOC CRM, although the CIDOC CRM Special Interest Group continues to maintain this original document as well.",
     "homepage": "https://www.cidoc-crm.org/",
     "logo": "https://api.fairsharing.org/rails/active_storage/blobs/redirect/eyJfcmFpbHMiOnsibWVzc2FnZSI6IkJBaHBBZUk9IiwiZXhwIjpudWxsLCJwdXIiOiJibG9iX2lkIn19--057a21005e538cb21742ec8a475bf44a6228c707/cidoc.png?disposition=inline",
     "name": "CIDOC Conceptual Reference Model",
@@ -6906,14 +6900,10 @@
   "FAIRsharing.RlEMBA": {
     "abbreviation": "P-PLAN",
     "description": "The Ontology for Provenance and Plans (P-Plan) is an extension of the PROV-O ontology [PROV-O] created to represent the plans that guided the execution of scientific processes. P-Plan describes how the plans are composed and their correspondence to provenance records that describe the execution itself.",
-    "domains": [
-      "Resource metadata"
-    ],
     "homepage": "http://purl.org/net/p-plan",
-    "license": "CC BY-NC-SA 2.0",
+    "license": "CC-BY-4.0",
     "name": "Ontology for Provenance and Plans",
     "subjects": [
-      "Data Management",
       "Computer Science"
     ]
   },
@@ -7782,14 +7772,13 @@
       "name": "Gary Schindelman",
       "orcid": "0000-0001-7883-4388"
     },
-    "description": "An ontology for phenotypes pertaining to the nematode Caenorhabditis elegans (C. elegans) and related nematodes used by the nematode genome database WormBase.",
+    "description": "An ontology for phenotypes pertaining to the nematode Caenorhabditis elegans (C. elegans) and related nematodes used by the nematode genome database WormBase. The C. elegans Phenotype Ontology organizes terms representing observed and reported phenotypes of C. elegans and related nematodes into a hierarchy for the purpose of phenotype term discovery (e.g. using ontology browsers) and logical reasoning (e.g. inferring genes whose perturbation results in a more general phenotype based on annotations to more specific phenotypes). There is an ongoing effort to generate logical definitions that will formalize the relationship between each phenotype term and the biological entities (cells, tissues, cellular components, biological processes, etc.) that are affected.",
     "domains": [
-      "Data analysis",
       "phenotype"
     ],
     "homepage": "https://github.com/obophenotype/c-elegans-phenotype-ontology",
     "license": "CC-BY-4.0",
-    "name": "C. elegans phenotype",
+    "name": "C. elegans phenotype ontology",
     "publications": [
       {
         "doi": "10.1186/1471-2105-12-32",
@@ -8754,6 +8743,7 @@
       "phenotype"
     ],
     "homepage": "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=MMO:0000000",
+    "license": "CC0-1.0",
     "name": "Measurement Method Ontology",
     "publications": [
       {
@@ -8769,6 +8759,7 @@
         "year": 2013
       }
     ],
+    "repository": "https://github.com/rat-genome-database/MMO-Measurement-Method-Ontology",
     "subjects": [
       "Life Science",
       "Preclinical Studies",
@@ -8884,6 +8875,11 @@
   },
   "FAIRsharing.bxc508": {
     "abbreviation": "OBIB",
+    "contact": {
+      "email": "jmwhorton@uams.edu",
+      "name": "Justin Whorton",
+      "orcid": "0009-0003-4268-6207"
+    },
     "description": "The ontology for Biobanking (OBIB) is an ontology built for annotation and modeling of biobank repository and biobanking administration. It is developed based on subset of Ontology for Biomedical Investigations (OBI) using Basic Formal Ontology (BFO) as top ontology and following OBO Foundry principles. The first version of the ontology is merged of two existing biobank related ontologies, OMIABIS and biobank ontology.",
     "domains": [
       "Biobank"
@@ -11890,6 +11886,7 @@
       "Taxonomic classification"
     ],
     "homepage": "https://github.com/obophenotype/ncbitaxon",
+    "license": "CC0-1.0",
     "name": "NCBI Organismal Classification",
     "publications": [
       {
@@ -12754,6 +12751,7 @@
       "cardiovascular disease"
     ],
     "homepage": "https://bioportal.lirmm.fr/ontologies/TOP-MENELAS",
+    "license": "https://creativecommons.org/licenses/by-nc-nd/2.0/uk",
     "name": "Menelas Project Top-Level Ontology",
     "subjects": [
       "Vascular Surgery",
@@ -13268,7 +13266,7 @@
     "domains": [
       "disease"
     ],
-    "homepage": "http://bioportal.bioontology.org/ontologies/DERMO",
+    "homepage": "https://github.com/dermatology-ontology/dermatology",
     "name": "Human Dermatological Disease Ontology",
     "publications": [
       {
@@ -14314,7 +14312,7 @@
       "protein",
       "target"
     ],
-    "homepage": "http://bioassayontology.org",
+    "homepage": "http://bioassayontology.org/bioassayontology/",
     "license": "CC-BY-4.0",
     "name": "BioAssay Ontology",
     "publications": [
@@ -14845,12 +14843,11 @@
   },
   "FAIRsharing.p1nva": {
     "abbreviation": "AURA",
-    "description": "KB-Bio-101 contains knowledge about processes and mechanisms, and was created from an introductory textbook in biology.",
+    "description": "Record does not exist anymore: KB_Bio_101. The record with identifier content 10.25504/FAIRsharing.p1nva was invalid as it did not describe a community ontology and therefore was never in scope for FAIRsharing. Records previously linked: [409, 6225]. Organisations previously linked: [2623]. Licences previously linked: [171].",
     "domains": [
       "chromosome"
     ],
     "homepage": "https://bioportal.bioontology.org/ontologies/AURA",
-    "license": "CC BY-NC 3.0",
     "name": "KB_Bio_101",
     "subjects": [
       "Biology"
@@ -15854,7 +15851,6 @@
     ]
   },
   "FAIRsharing.rbpqg": {
-    "abbreviation": "PGXO",
     "description": "PGxO is a lightweight and simple Pharmacogenomic Ontology to reconcile and trace knowledge in pharmacogenomics (PGx).",
     "domains": [
       "Electronic Health Record"
@@ -17321,7 +17317,8 @@
     "domains": [
       "ncRNA"
     ],
-    "homepage": "http://bioportal.bioontology.org/ontologies/NCRO",
+    "homepage": "https://github.com/OmniSearch/ncro",
+    "license": "CC-BY-4.0",
     "name": "Non-coding RNA Ontology",
     "publications": [
       {
@@ -18738,8 +18735,6 @@
     "abbreviation": "CPTAC",
     "description": "A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project",
     "domains": [
-      "Data acquisition",
-      "data transformation",
       "protein"
     ],
     "homepage": "http://bioportal.bioontology.org/ontologies/1192",

bioregistry/external/go/processed.json

@@ -3578,6 +3578,7 @@
       {
         "example_id": "SGD_PWY:SERSYN-PWY",
         "example_url": "https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=NIL&object=SERSYN-PWY",
+        "id_syntax": "^[A-Z0-9-]+$",
         "type_id": "BET:0000000",
         "type_name": "entity",
         "url_syntax": "https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=NIL&object=[example_id]"

bioregistry/external/integbio/processed.json

@@ -69,7 +69,7 @@
  },
  "nbdc00005": {
   "description": "Animal Search System allows keyword searches to be performed on more than 2000 strains of mice available from the RIKEN BRC, including transgenic, knockout, inbred, wild-derived, ENU mutant and congenic strains. Although the top page is written in Japanese, each search result has a link to the English page. The system also provides detailed information that capture the characteristics of the strain, such as the strain name, description, gene details, references, availability status, images and so on.",
-  "homepage": "http://www2.brc.riken.jp/lab/animal/search.php",
+  "homepage": "https://mus.brc.riken.jp/en/search_for_mouse_strain",
   "information_keywords": [
    "Bioresource",
    "Method",
@@ -386,6 +386,7 @@
   "maintainer": "NCBI (National Center for Biotechnology Information)",
   "name": "Cancer Chromosomes",
   "prefix": "NBDC00021",
+  "status": "Closed",
   "target_keywords": [
    "Genome/Gene",
    "Health/Disease",
@@ -522,7 +523,7 @@
    "14744116",
    "15669238"
   ],
-  "status": "Inactive",
+  "status": "Closed",
   "target_keywords": [
    "cDNA/EST"
   ]
@@ -1795,7 +1796,7 @@
   "maintainer": "University of California",
   "name": "HarvEST",
   "prefix": "NBDC00094",
-  "status": "Active",
+  "status": "Inactive",
   "target_keywords": [
    "cDNA/EST"
   ]
@@ -1822,13 +1823,13 @@
  "nbdc00096": {
   "alt_name": "A navigator of small molecules in Protein Data Bank which is called heterogen atoms or in short hetatoms",
   "description": "Het-PDB Navi is a database of heterogen molecules in the Protein Data Bank (PDB), which act as cofactors for enzymes or stabilizers of proteins. Entries can be surveyed to study their interactions statistically. Searches can be performed based on PDB code, hetero-atom code, protein name or hetero-atom name. Help with the use of the RasMol application is also provided.",
-  "homepage": "http://hetpdbnavi.nagahama-i-bio.ac.jp/index.php?mode=0",
+  "homepage": "https://hetpdbnavi.nagahama-i-bio.ac.jp/",
   "information_keywords": [
    "Interaction/Pathway",
    "3D structure"
   ],
   "maintainer": "Nagahama Institute of Bio-Science and Technology",
-  "name": "Het-PDB Navi",
+  "name": "Het-PDB Navi２",
   "prefix": "NBDC00096",
   "pubmeds": [
    "14999012"
@@ -1900,7 +1901,7 @@
   "maintainer": "NCBI (National Center for Biotechnology Information)",
   "name": "HomoloGene",
   "prefix": "NBDC00101",
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "Genome/Gene",
    "Protein"
@@ -2144,7 +2145,7 @@
  "nbdc00113": {
   "alt_name": "Japan Mouse/Rat Strain Resources Database",
   "description": "JMSR is constructed by the genetic Informatics Laboratory, National Institute of genetics (NIG) as a database of mouse and rat strains stocked in Japan. JMSR covers almost all the bioresources of mice and rats available in Japan including frozen embryos, frozen sperm, organs and ES cells. This database provides a query form to cross-search databases of 10 stock centers for the strains. A link in each search result shows detailed information on a request for the bioresource.",
-  "homepage": "http://www.shigen.nig.ac.jp/mouse/jmsr/top.jsp",
+  "homepage": "https://shigen.nig.ac.jp/mouse/jmsr/",
   "information_keywords": [
    "Bioresource"
   ],
@@ -2607,7 +2608,7 @@
  "nbdc00139": {
   "alt_name": "Mouse Microsatellite Data Base of Japan",
   "description": "MMDBJ is a database of mouse microsatellite loci to provide information about simple sequence length polymorphisms (SSLPs) among different strains. MMDBJ features SSLP loci obtained from strains derived from Mus musculus molossinus (Japanese wild mouse). Each record contains polymorphism data, PCR condition and a link to Ensembl Genome Browser web page to view primer sequences. This database also provides a search engine and a linkage map of mouse microsatellite loci.",
-  "homepage": "http://www.shigen.nig.ac.jp/mouse/mmdbj/top.jsp",
+  "homepage": "http://shigen.nig.ac.jp/mouse/mmdbj/",
   "information_keywords": [
    "Sequence",
    "Image/Movie"
@@ -2618,7 +2619,7 @@
   "pubmeds": [
    "15153678"
   ],
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "cDNA/EST",
    "Genetic variation"
@@ -2783,21 +2784,21 @@
   ]
  },
  "nbdc00150": {
-  "alt_name": "Nucleic Acid Database",
-  "description": "The Nucleic Acid Database Project (NDB) aims to collect and distribute information on nucleic acid structures. Each entry contains information on nucleic acid sequences, its structure and the characteristics, the primary citation, experimental information, as well as a link to PDB. Furthermore, structure coordinates and structure factors can be downloaded from the site.",
+  "alt_name": "Nucleic Acid Knowledgebase",
+  "description": "The Nucleic Acid Knowledgebase (NAKB) aims to collect and distribute information on nucleic acid structures. Each entry contains information on nucleic acid sequences, its structure and the characteristics, the primary citation, experimental information, as well as a link to PDB. Furthermore, structure coordinates and structure factors can be downloaded from the site.",
   "fairsharing": "biodbcore-000513",
-  "homepage": "http://ndbserver.rutgers.edu",
+  "homepage": "https://nakb.org/",
   "information_keywords": [
    "Sequence",
    "Bibliography/Documents"
   ],
   "maintainer": "The State University of New Jersey",
-  "name": "NDB",
+  "name": "NAKB",
   "prefix": "NBDC00150",
   "pubmeds": [
    "1384741"
   ],
-  "status": "Inactive",
+  "status": "Active",
   "target_keywords": [
    "DNA",
    "RNA",
@@ -3058,16 +3059,15 @@
   ]
  },
  "nbdc00164": {
-  "alt_name": "Pharmacogenomics Knowledge Base",
-  "description": "PharmGKB is a database of genotype-drug response knowledge. The database contains information about genes, diseases, and drugs independently and information on how the three factors interact. PharmGKB is curated by scientists and engineers with expertise in pharmacogenomics. Bulk data is available for download.",
+  "description": "ClinPGx is a comprehensive database of pharmacogenomics (PGx) resource. It is designed to catalog, curate, annotate, integrate, generate and disseminate PGx knowledge, and advance PGx clinical implementation,  PGx integration with genomic medicine, and PGx education. ClinPGx is constructed from the combination of the NIH-funded PharmGKB, CPIC and PharmCAT projects, with new features and tools. It will also work with ClinGen and ClinVar to improve integration of PGx within broader genomic medicine.",
   "fairsharing": "biodbcore-000525",
-  "homepage": "http://www.pharmgkb.org/",
+  "homepage": "https://www.clinpgx.org/",
   "information_keywords": [
    "Ontology/Terminology/Nomenclature",
    "Interaction/Pathway"
   ],
   "maintainer": "Stanford University",
-  "name": "PharmGKB",
+  "name": "ClinPGx",
   "prefix": "NBDC00164",
   "pubmeds": [
    "11752281",
@@ -3457,7 +3457,7 @@
    "19004872",
    "24288368"
   ],
-  "status": "Inactive",
+  "status": "Closed",
   "target_keywords": [
    "RNA"
   ]
@@ -3608,7 +3608,7 @@
    "15608280",
    "16769687"
   ],
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "cDNA/EST"
   ]
@@ -3732,7 +3732,7 @@
    "15980577",
    "14681423"
   ],
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "Cell/Organelle"
   ]
@@ -3978,7 +3978,7 @@
   "pubmeds": [
    "15509851"
   ],
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "cDNA/EST"
   ]
@@ -4052,7 +4052,7 @@
    "14996221",
    "15840642"
   ],
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "Genome/Gene",
    "Organism"
@@ -4304,7 +4304,7 @@
   "pubmeds": [
    "12324948"
   ],
-  "status": "Active",
+  "status": "Closed",
   "target_keywords": [
    "Genome/Gene",
    "Organism"
@@ -4811,7 +4811,7 @@
  "nbdc00267": {
   "alt_name": "Four-dimensional Ascidian Body Atlas",
   "description": "FABA is a database of the developmental stages of Ciona intestinalis, with 3D images taken at critical time points, as well as movies of the development process, for standardization of C. intestinalis studies. Images were acquired at zygote, cleavage, gastrula, neurula, tailbud, and larva stages. Downloads are available, as is a companion site (FABA2) with images of organisms post-hatching.",
-  "homepage": "https://www.bpni.bio.keio.ac.jp/chordate/faba/1.4/top.html",
+  "homepage": "https://chordate.bpni.bio.keio.ac.jp/chordate/faba/1.4/top.html",
   "information_keywords": [
    "Image/Movie",
    "3D structure"
@@ -4822,7 +4822,7 @@
   "pubmeds": [
    "17557317"
   ],
-  "status": "Inactive",
+  "status": "Active",
   "target_keywords": [
    "Protein",
    "Organism"
@@ -5260,7 +5260,7 @@
  "nbdc00298": {
   "alt_name": "High Resolution Mass Spectral Database",
   "description": "MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was developed by the Institute for Advanced Biosciences, Keio University (IAB) Analytical Chemistry Group, and the RIKEN Plant Science Center (PSC) Metabolomics Research Group. MassBank is used to search chemical compounds that have been detected by mass spectrometry for chemical identification, structure detail, similar spectrum search, etc. MassBank was recognized as the official mass spectral database of the Mass Spectrometry Society of Japan in 2008. It also contains the results of the NEDO project.",
-  "homepage": "http://www.massbank.jp/Index",
+  "homepage": "https://massbank.jp/MassBank/",
   "information_keywords": [
    "Method",
    "Chemical structure"
@@ -10729,6 +10729,7 @@
   "pubmeds": [
    "19032166"
   ],
+  "status": "Closed",
   "target_keywords": [
    "Metabolite"
   ]
@@ -40479,5 +40480,135 @@
    "Genome/Gene",
    "Protein"
   ]
+ },
+ "nbdc02666": {
+  "alt_name": "quantification of Post-Translational Modifications",
+  "description": "qPTM is a database about quantitative phosphoproteome data. It contains 6 types of PTMs including acetylation, glycosylation, methylation, phosphorylation, SUMOylation, ubiquitylation in 4 different organisms including human, mouse, rat and yeast.",
+  "homepage": "http://qptm.omicsbio.info/",
+  "information_keywords": [
+   "Method",
+   "Sequence",
+   "3D structure",
+   "Bibliography/Documents"
+  ],
+  "maintainer": "Sun Yat-sen University Cancer Center",
+  "name": "qPTM",
+  "prefix": "NBDC02666",
+  "pubmeds": [
+   "30380102",
+   "36165955"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Epigenetics",
+   "Protein"
+  ]
+ },
+ "nbdc02667": {
+  "alt_name": "Chemical Exposure and the biomarker linkage Database",
+  "description": "CBLD is a database about small molecule chemical exposure and the exposure biomarkers found in experimental animal and human specimens. It contains name, CAS number and conformation of exposue  chemicals, or name, IUPAC name, molecular formula, functional group and exposure guidance value of biomarkers. CBLD allows user to add biomarkers.",
+  "homepage": "https://oe-blist-tvu3.glide.page/dl/a400f7",
+  "information_keywords": [
+   "Chemical structure",
+   "Repository"
+  ],
+  "maintainer": "Department of Biomolecular Sciences, Nagoya University Graduate School of Medicine||Japan Industrial Safety and Health Association",
+  "name": "CBLD",
+  "prefix": "NBDC02667",
+  "status": "Active",
+  "target_keywords": [
+   "Chemical compound"
+  ]
+ },
+ "nbdc02668": {
+  "alt_name": "Genomic Expression Archive",
+  "description": "Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expression, epigenetics and genotyping SNP array. Both microarray- and sequence-based data are accepted in the MAGE-TAB format in compliance with MIAME and MINSEQE guidelines, respectively. GEA issues accession numbers, E-GEAD-n to experiment and A-GEAD-n to array design.",
+  "homepage": "https://www.ddbj.nig.ac.jp/gea/index-e.html",
+  "information_keywords": [
+   "Sequence",
+   "Expression",
+   "Repository"
+  ],
+  "maintainer": "Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems",
+  "name": "GEA",
+  "prefix": "NBDC02668",
+  "pubmeds": [
+   "30357349"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Genome/Gene",
+   "cDNA/EST",
+   "Genetic variation",
+   "Epigenetics"
+  ]
+ },
+ "nbdc02669": {
+  "description": "LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and database that provides access to a large number of globally used lipidomics resources. LIPID MAPS® has internationally led the field of lipid curation, classification, and nomenclature since 2003. We strive to produce new open-access databases, informatics tools and lipidomics-focused training activities will be generated and made publicly available for researchers studying lipids in health and disease. LIPID MAPS® is currently funded by a multi-institutional grant from Wellcome, held jointly by Cardiff University, University of California San Diego, the Babraham Institute Cambridge, and Swansea University, as well as an Innovation Study funded by ELIXIR. This current phase will see that LIPID MAPS® is maintained and importantly, further developed in line with the global demand and development of lipidomics. LIPID MAPS® has an internationally recognized classification system and the largest curated lipid structure database in the world.",
+  "homepage": "https://www.lipidmaps.org/",
+  "information_keywords": [
+   "Ontology/Terminology/Nomenclature",
+   "Chemical structure",
+   "Interaction/Pathway",
+   "Classification"
+  ],
+  "maintainer": "BBSRC Babraham Institute||Cardiff University",
+  "name": "LIPID MAPS",
+  "prefix": "NBDC02669",
+  "pubmeds": [
+   "37855672",
+   "17584797",
+   "17098933",
+   "37855672",
+   "33564392",
+   "16381922"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Lipid"
+  ]
+ },
+ "nbdc02670": {
+  "description": "PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways found in model organisms such as humans, mice, E. coli, yeast, and Arabidopsis thaliana. The majority of these pathways are not found in any other pathway database. PathBank is designed specifically to support pathway elucidation and pathway discovery in metabolomics, transcriptomics, proteomics, and systems biology. All PathBank pathways include information on the relevant organelles, subcellular compartments, protein complex cofactors, protein complex locations, metabolite locations, chemical structures, and protein complex quaternary structures. The database is easily browsed and supports full text, sequence, and chemical structure searching.",
+  "homepage": "https://pathbank.org/",
+  "information_keywords": [
+   "Chemical structure",
+   "Interaction/Pathway",
+   "Image/Movie"
+  ],
+  "maintainer": "Wishart Research Group, University of Alberta",
+  "name": "Pathbank",
+  "prefix": "NBDC02670",
+  "pubmeds": [
+   "31602464",
+   "37962386"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Protein",
+   "Metabolite"
+  ]
+ },
+ "nbdc02671": {
+  "description": "RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broad range of organisms and RNA types.",
+  "homepage": "https://rnacentral.org/",
+  "information_keywords": [
+   "Sequence",
+   "Expression",
+   "Bibliography/Documents",
+   "Portal"
+  ],
+  "maintainer": "European Bioinformatics Institute",
+  "name": "RNAcentral",
+  "prefix": "NBDC02671",
+  "pubmeds": [
+   "30395267"
+  ],
+  "status": "Active",
+  "target_keywords": [
+   "Genome/Gene",
+   "RNA",
+   "Organism"
+  ]
  }
 }

bioregistry/external/obofoundry/processed.json

@@ -1369,7 +1369,7 @@
         "title": "Textual Anatomics: the Mouse Developmental Anatomy Ontology and the Gene Expression Database for Mouse Development (GXD)"
       }
     ],
-    "repository": "https://github.com/obophenotype/mouse-anatomy-ontology"
+    "repository": "https://github.com/obophenotype/developmental-mouse-anatomy-ontology"
   },
   "envo": {
     "appears_in": [
@@ -5115,6 +5115,7 @@
     "deprecated": false,
     "description": "Metrical units for use in conjunction with PATO",
     "domain": "phenotype",
+    "download.json": "http://purl.obolibrary.org/obo/uo.json",
     "download.obo": "http://purl.obolibrary.org/obo/uo.obo",
     "download.owl": "http://purl.obolibrary.org/obo/uo.owl",
     "homepage": "https://github.com/bio-ontology-research-group/unit-ontology",