bioregistry 0.13.16__py3-none-any.whl → 0.13.18__py3-none-any.whl

bioregistry/external/bioportal/agroportal.json

@@ -226,7 +226,7 @@
       "name": "Filipi Miranda Soares"
     },
     "description": "The Agriculture Product Types Ontology (APTO) is an ontology of types, meaning it does not contain individuals and is intended as a classification system for agricultural commodities price index databases in Brazil. This ontology contains labels and comments in both Portuguese and English. There are two main modules: :Organism and :Product_type. The :Organism class contains subclasses that represent the taxonomy of species related to the production of given product types. It imports taxonomic information from the Global Biodiversity Information Facility (GBIF) Backbone Taxonomy via API. The :Product_type class has six main subclasses organized into major groups: :Inorganic_compound :Animal_product :Plant_product :Raw_product :Processed_product :By-product The :Animal_product and :Plant_product classes include subclasses indicating the type of processing the product has undergone. These subclasses are also children of :Raw_product, :Processed_product, and :By-product. Object Properties APTO defines nine object properties: :has_ingredient and :is_ingredient_of (inverse properties): Indicate that a product type is used in the manufacturing of a processed product type (e.g., :Cow_cheese :has_ingredient :Cow_milk). :derives_from and :derives_in (inverse properties, imported from the Relations Ontology (RO)): Indicate that a product type originates from another product type (e.g., :Cocoa_almond :derives_from :Cocoa). :member_of_taxon (imported from the Biological Collections Ontology (BCO)): Indicates that an organismal entity belongs to a taxon (e.g., :Pacu :member_of_taxon :Piaractus_mesopotamicus). :produced_by and :produces (inverse properties, imported from RO): Indicate that an organismal entity produces a given type of product. For example, :Assai :produced_by :Assai_palm, and :Assai_palm :member_of_taxon :Euterpe_oleracea. If only the final product is listed in commodity databases and the rest of the organism holds no commercial value, the product is linked directly to the taxon (e.g., :Pineapple :produced_by :Ananas_comosus). :residue_of: Indicates that a by-product is the residue of manufacturing another product (e.g., :Whey :residue_of :Cheese). :is_a_hybrid_of: Specific to the :Organism subclasses, indicating a hybrid of two species (e.g., :Citrus_aurantium :is_a_hybrid_of ( :Citrus_reticulata and :Citrus_maxima ))., meaning it does not contain individuals and is intended as a classification system for agricultural commodities price index databases in Brazil. This ontology contains labels and comments in both Portuguese and English. There are two main modules: :Organism and :Product_type. The :Organism class contains subclasses that represent the taxonomy of species related to the production of given product types. It imports taxonomic information from the Global Biodiversity Information Facility (GBIF) Backbone Taxonomy via API. The :Product_type class has six main subclasses organized into major groups: :Inorganic_compound :Animal_product :Plant_product :Raw_product :Processed_product :By-product The :Animal_product and :Plant_product classes include subclasses indicating the type of processing the product has undergone.",
-    "example_uri": "https://w3id.org/APTO#PT0051",
+    "example_uri": "https://w3id.org/APTO/PT0051",
     "homepage": "https://almescore.github.io/APTO/",
     "license": "CC-BY-4.0",
     "name": "Agriculture Product Types Ontology",
@@ -237,7 +237,7 @@
       "https://doi.org/10.1109/ACCESS.2025.3595447"
     ],
     "repository": "https://github.com/AlmesCore/APTO/tree/main",
-    "version": "1.2999999523162841797"
+    "version": "1.3.2"
   },
   "AQFO": {
     "contact": {
@@ -542,6 +542,42 @@
     "prefix": "CDNO",
     "repository": "https://github.com/Southern-Cross-Plant-Science/cdno"
   },
+  "CEON": {
+    "contact": {
+      "email": "huanyu.li@liu.se",
+      "name": "Huanyu Li"
+    },
+    "description": "The full module of CEON (Circular Economy Ontology Network).",
+    "example_uri": "http://w3id.org/CEON/ontology/cvn/CircularStrategy",
+    "homepage": "https://liusemweb.github.io/CEON/",
+    "license": "https://github.com/LiUSemWeb/CEON/blob/master/LICENSE",
+    "name": "Circular Economy Ontology Network",
+    "prefix": "CEON",
+    "repository": "https://github.com/LiUSemWeb/CEON/",
+    "version": "0.2"
+  },
+  "CEON-ENERGY": {
+    "contact": {
+      "email": "huanyu.li@liu.se",
+      "name": "Huanyu Li"
+    },
+    "description": "A module of the CEON ontology network defining aspects of the energy concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Energy Module",
+    "prefix": "CEON-ENERGY",
+    "version": "0.2"
+  },
+  "CEON-PROCESSODP": {
+    "contact": {
+      "email": "huanyu.li@liu.se",
+      "name": "Huanyu Li"
+    },
+    "description": "A core ODP of the CEON ontology network, defining aspects of the process concept.",
+    "license": "CC-BY-4.0",
+    "name": "Circular Economy Ontology Network (CEON) - Process ODP",
+    "prefix": "CEON-PROCESSODP",
+    "version": "0.5"
+  },
   "CGO": {
     "contact": {
       "email": "jack.verhoosel@tno.nl",
@@ -1282,17 +1318,15 @@
     "repository": "https://github.com/rapw3k/DEMETER/tree/master/models",
     "version": "3.0"
   },
-  "DFC-B": {
+  "DFC": {
     "contact": {
-      "email": "baptiste.darnala@elzeard.co",
-      "name": "Baptiste Darnala"
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
     },
-    "description": "This ontology will help to describe the business model applied to the products described in the product ontology of the Data Food Consortium. Information about products, offers, orders, and logistics are described to facilitate the distribution of products in short circuits. , A common vocabulary for digital food platforms (Business Part)",
-    "license": "https://www.gnu.org/licenses/agpl-3.0.en.html",
-    "name": "DataFoodConsortium - Business Ontology",
-    "prefix": "DFC-B",
-    "repository": "https://github.com/datafoodconsortium/ontology",
-    "version": "1.16.0"
+    "description": "A common vocabulary for digital food platforms",
+    "name": "Data Food Consortium Ontology",
+    "prefix": "DFC",
+    "version": "v4.0"
   },
   "DSW": {
     "contact": {
@@ -1400,7 +1434,7 @@
     "name": "Experimental Factor Ontology",
     "prefix": "EFO",
     "repository": "https://github.com/EBISPOT/efo",
-    "version": "3.85.0"
+    "version": "3.86.0"
   },
   "ENVO": {
     "contact": {
@@ -1576,6 +1610,17 @@
     "repository": "https://github.com/pcastellanoescuder/FoodBiomarkerOntology",
     "version": "1.0.0"
   },
+  "FOO": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "This ontology describes wildlife observations generated by sensors.",
+    "license": "CC BY-SA 4.0",
+    "name": "Forest Observatory Ontology (FOO)",
+    "prefix": "FOO",
+    "version": "BBC Wildlife Ontology Reused 26 June 2024"
+  },
   "FOOD": {
     "contact": {
       "email": "nauer@loria.fr",
@@ -1674,6 +1719,20 @@
     ],
     "repository": "https://github.com/ditect-eu/ontology"
   },
+  "FWO": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "An ontology to model food donation logistics.",
+    "license": "CC-BY-4.0",
+    "name": "Food Wastage Ontology",
+    "prefix": "FWO",
+    "publications": [
+      "http://purl.org/dc/elements/1.1/"
+    ],
+    "version": "v1.0"
+  },
   "GACS": {
     "contact": {
       "email": "tom@tombaker.org",
@@ -1826,6 +1885,42 @@
     "prefix": "GR-TAX",
     "version": "2013"
   },
+  "ICASA-CORE": {
+    "contact": {
+      "email": "willis8@illinois.edu",
+      "name": "Craig Willis"
+    },
+    "description": "Ontology based on the ICASA version 2.0 data standard. The foundation of the standard is a master list of variables with major separations among descriptions of management practices or treatments, environmental conditions (soil and weather data), and measurements of crop responses as described in White et al (2013)., and measurements of crop responses as described in White et al (2013).",
+    "homepage": "https://github.com/craig-willis/icasa",
+    "name": "Core ICASA ontology for integrated description of agricultural field experiments and production",
+    "prefix": "ICASA-CORE",
+    "repository": "https://github.com/craig-willis/icasa",
+    "version": "1.0-alpha"
+  },
+  "ICASA-VARIABLES": {
+    "contact": {
+      "email": "willis8@illinois.edu",
+      "name": "Craig Willis"
+    },
+    "description": "Ontology based on the ICASA version 2.0 data standard. The foundation of the standard is a master list of variables with major separations among descriptions of management practices or treatments, environmental conditions (soil and weather data), and measurements of crop responses as described in White et al (2013)., and measurements of crop responses as described in White et al (2013).",
+    "homepage": "https://github.com/craig-willis/icasa",
+    "name": "Variables: ICASA ontology for integrated description of agricultural field experiments and production",
+    "prefix": "ICASA-VARIABLES",
+    "repository": "https://github.com/craig-willis/icasa",
+    "version": "1.0-alpha"
+  },
+  "ICASA-VU": {
+    "contact": {
+      "email": "willis8@illinois.edu",
+      "name": "Craig Willis"
+    },
+    "description": "Ontology intended to model variables and units capturing the ICASA measured data variables as well as CF standard names and BETYdb variables., Ontology intended to model variables and units capturing the ICASA measured data variables as well as CF standard names and BETYdb variables.",
+    "homepage": "https://github.com/craig-willis/icasa",
+    "name": "ICASA Ontology for Variables and Units",
+    "prefix": "ICASA-VU",
+    "repository": "https://github.com/craig-willis/icasa",
+    "version": "1.0-alpha"
+  },
   "ICC": {
     "contact": {
       "email": "faq-hq@fao.org",
@@ -1945,12 +2040,21 @@
       "email": "jeanlouisjanin@gmail.com",
       "name": "Jean-Louis Janin"
     },
-    "description": "The aim of the Lexeau® project is to promote cross-comprehension between those involved in the water sector - scientists, engineers, technicians, administrative staff and lawyers - in their respective areas of expertise, and with the general public. It includes the production of LEXEAU, a bilingual ontology, as a source of the water lexicon published by the Académie de l'Eau. - Le projet Lexeau® a pour but de promouvoir l'intercompréhension entre les acteurs du domaine de l'eau, scientifiques, ingénieurs, techniciens, administratifs et juristes, dans leur domaine de compétence, et avec le grand public. Il comprend la production de LEXEAU, une ontologie bilingue, comme source du lexique de publié par l'Académie de l'Eau.",
+    "description": "The aim of the Lexeau® project is to promote cross-comprehension between those involved in the water sector - scientists, engineers, technicians, administrative staff and lawyers - in their respective areas of expertise, and with the general public. It includes the production of LEXEAU, a bilingual ontology, as a source of the water lexicon published by the Académie de l'Eau. - Le projet Lexeau® a pour but de promouvoir l'intercompréhension entre les acteurs du domaine de l'eau, scientifiques, ingénieurs, techniciens, administratifs et juristes, dans leur domaine de compétence, et avec le grand public. Il comprend la production de LEXEAU, une ontologie bilingue, comme source du lexique de l'eau publié par l'Académie de l'Eau.",
     "license": "CC-BY-4.0",
     "name": "A lexicon of water related textual and geophysicla data - Un lexique de données textuelles et géophysiques sur l'eau",
     "prefix": "LEXEAU",
     "version": "2.4"
   },
+  "LEXIQUE": {
+    "contact": {
+      "email": "jeanlouisjanin@gmail.com",
+      "name": "Jean-Louis Janin"
+    },
+    "description": "Derived from the LEXEAU ontology version 2.4 on 2026-01-13, as the core of other stratified technical lexicons",
+    "name": "Un noyau conceptuel pour élaborer des lexiques techniques stratifiés des ressources naturelles",
+    "prefix": "LEXIQUE"
+  },
   "LHO": {
     "contact": {
       "email": "saba.noor@ugent.be",
@@ -2421,6 +2525,9 @@
     "license": "CC-BY-4.0",
     "name": "Plant Phenotype Experiment Ontology",
     "prefix": "PPEO",
+    "publications": [
+      "https://doi.org/10.1111/nph.16544"
+    ],
     "repository": "https://github.com/MIAPPE/MIAPPE-ontology",
     "version": "1.1-beta"
   },
@@ -2465,7 +2572,7 @@
       "https://planteome.org/references"
     ],
     "repository": "https://github.com/Planteome/plant-stress-ontology",
-    "version": "2025-12-16"
+    "version": "2026-01-08"
   },
   "REPO": {
     "contact": {
@@ -2771,6 +2878,10 @@
     "repository": "https://github.com/Planteome/soybase-ontology",
     "version": "V10 revision 2.4"
   },
+  "SPFOOD": {
+    "name": "SmartProducts Food Domain Model",
+    "prefix": "SPFOOD"
+  },
   "SPO-FDM": {
     "contact": {
       "email": "e.motta@open.ac.uk",
@@ -2870,6 +2981,17 @@
       "https://doi.org/10.1371/journal.pone.0108985"
     ]
   },
+  "TAX": {
+    "contact": {
+      "email": "mohamed-el-amine.boukerfa@inrae.fr",
+      "name": "LOV_migration"
+    },
+    "description": "EUdaphobase Taxonomy Ontology for the European Soil-Biology Data Warehouse for Soil Protection",
+    "license": "https://opensource.org/licenses/MIT",
+    "name": "EUTaxO - EUdaphobase Taxonomy Ontology",
+    "prefix": "TAX",
+    "version": "v2.0.0 - Changes:\nThis major version adapts the ontology to better comply with the FAIR principles.\n- Changed URI from \"https://www.eudaphobase.eu/ontologies/taxonomy\" to \"https://w3id.org/EUTaxO\"\n- Complete ontology metadata\n- Complete labels and comments for all terms\n- Remove support to parse output excel file\n- Remove all spaces from URIs"
+  },
   "TAXRANK": {
     "contact": {
       "email": "peter.midford@gmail.com",
@@ -3039,7 +3161,7 @@
       "https://doi.org/10.1093/database/bas033"
     ],
     "repository": "https://github.com/bio-ontology-research-group/unit-ontology",
-    "version": "2023-05-25"
+    "version": "2026-01-16"
   },
   "USE": {
     "contact": {