benchling-v3-sdk-python 5.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2930) hide show
  1. benchling_v3_sdk/__init__.py +9254 -0
  2. benchling_v3_sdk/_async_tasks/__init__.py +22 -0
  3. benchling_v3_sdk/_async_tasks/adapters/__init__.py +17 -0
  4. benchling_v3_sdk/_async_tasks/adapters/base.py +100 -0
  5. benchling_v3_sdk/_async_tasks/adapters/binding.py +73 -0
  6. benchling_v3_sdk/_async_tasks/adapters/bulk.py +62 -0
  7. benchling_v3_sdk/_async_tasks/adapters/operation_scoped.py +54 -0
  8. benchling_v3_sdk/_async_tasks/client_validation.py +22 -0
  9. benchling_v3_sdk/_async_tasks/completion.py +23 -0
  10. benchling_v3_sdk/_async_tasks/constants.py +41 -0
  11. benchling_v3_sdk/_async_tasks/engine.py +122 -0
  12. benchling_v3_sdk/_async_tasks/errors.py +140 -0
  13. benchling_v3_sdk/_async_tasks/link_validation.py +60 -0
  14. benchling_v3_sdk/_async_tasks/path_parser.py +120 -0
  15. benchling_v3_sdk/_async_tasks/presigned_file_streaming.py +36 -0
  16. benchling_v3_sdk/_async_tasks/registry.py +68 -0
  17. benchling_v3_sdk/_async_tasks/wait.py +122 -0
  18. benchling_v3_sdk/_default_clients.py +32 -0
  19. benchling_v3_sdk/aa_monomer/__init__.py +38 -0
  20. benchling_v3_sdk/aa_monomer/client.py +1030 -0
  21. benchling_v3_sdk/aa_monomer/raw_client.py +2074 -0
  22. benchling_v3_sdk/aa_monomer/types/__init__.py +40 -0
  23. benchling_v3_sdk/aa_monomer/types/batch_create_aa_monomer_response.py +20 -0
  24. benchling_v3_sdk/aa_monomer/types/batch_update_aa_monomer_response.py +20 -0
  25. benchling_v3_sdk/aa_monomer/types/list_aa_monomer_request_sort.py +7 -0
  26. benchling_v3_sdk/aa_sequence/__init__.py +49 -0
  27. benchling_v3_sdk/aa_sequence/client.py +1661 -0
  28. benchling_v3_sdk/aa_sequence/raw_client.py +2857 -0
  29. benchling_v3_sdk/aa_sequence/types/__init__.py +47 -0
  30. benchling_v3_sdk/aa_sequence/types/batch_create_aa_sequence_response.py +20 -0
  31. benchling_v3_sdk/aa_sequence/types/batch_update_aa_sequence_response.py +20 -0
  32. benchling_v3_sdk/aa_sequence/types/list_aa_sequence_request_sort.py +7 -0
  33. benchling_v3_sdk/aa_sequence/types/update_aa_sequence_input_naming_strategy.py +16 -0
  34. benchling_v3_sdk/aa_sequence_schema/__init__.py +67 -0
  35. benchling_v3_sdk/aa_sequence_schema/client.py +1930 -0
  36. benchling_v3_sdk/aa_sequence_schema/raw_client.py +3878 -0
  37. benchling_v3_sdk/aa_sequence_schema/types/__init__.py +75 -0
  38. benchling_v3_sdk/aa_sequence_schema/types/aa_sequence_schema_set_field_definitions_input_field_definitions_item.py +127 -0
  39. benchling_v3_sdk/aa_sequence_schema/types/batch_create_aa_sequence_schema_response.py +20 -0
  40. benchling_v3_sdk/aa_sequence_schema/types/batch_update_aa_sequence_schema_response.py +20 -0
  41. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_apply_fieldset_aa_sequence_schema_response.py +25 -0
  42. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_apply_fieldset_aa_sequence_schema_response_status.py +7 -0
  43. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_set_field_definitions_aa_sequence_schema_response.py +25 -0
  44. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_set_field_definitions_aa_sequence_schema_response_status.py +7 -0
  45. benchling_v3_sdk/aa_sequence_schema/types/list_aa_sequence_schema_request_sort.py +7 -0
  46. benchling_v3_sdk/aa_sequence_schema/types/update_aa_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  47. benchling_v3_sdk/aa_sequence_schema/types/update_aa_sequence_schema_input_icon_id.py +7 -0
  48. benchling_v3_sdk/agent/__init__.py +64 -0
  49. benchling_v3_sdk/agent/client.py +271 -0
  50. benchling_v3_sdk/agent/raw_client.py +540 -0
  51. benchling_v3_sdk/agent/types/__init__.py +62 -0
  52. benchling_v3_sdk/agent/types/create_agent_input_agent.py +5 -0
  53. benchling_v3_sdk/agent/types/create_agent_response.py +26 -0
  54. benchling_v3_sdk/agent/types/get_task_agent_response.py +45 -0
  55. benchling_v3_sdk/agent/types/get_task_agent_response_agent.py +7 -0
  56. benchling_v3_sdk/agent/types/get_task_agent_response_artifacts_item.py +38 -0
  57. benchling_v3_sdk/agent/types/get_task_agent_response_artifacts_item_type.py +5 -0
  58. benchling_v3_sdk/agent/types/get_task_agent_response_content_item.py +25 -0
  59. benchling_v3_sdk/agent/types/get_task_agent_response_content_item_content_type.py +5 -0
  60. benchling_v3_sdk/agent/types/get_task_agent_response_status.py +5 -0
  61. benchling_v3_sdk/analysis/__init__.py +34 -0
  62. benchling_v3_sdk/analysis/client.py +483 -0
  63. benchling_v3_sdk/analysis/raw_client.py +902 -0
  64. benchling_v3_sdk/analysis/types/__init__.py +34 -0
  65. benchling_v3_sdk/analysis/types/list_analysis_request_sort.py +7 -0
  66. benchling_v3_sdk/app_canvas/__init__.py +37 -0
  67. benchling_v3_sdk/app_canvas/client.py +795 -0
  68. benchling_v3_sdk/app_canvas/raw_client.py +1653 -0
  69. benchling_v3_sdk/app_canvas/types/__init__.py +38 -0
  70. benchling_v3_sdk/app_canvas/types/batch_create_app_canvas_response.py +20 -0
  71. benchling_v3_sdk/app_canvas/types/batch_update_app_canvas_response.py +20 -0
  72. benchling_v3_sdk/app_config_value/__init__.py +34 -0
  73. benchling_v3_sdk/app_config_value/client.py +368 -0
  74. benchling_v3_sdk/app_config_value/raw_client.py +641 -0
  75. benchling_v3_sdk/app_config_value/types/__init__.py +34 -0
  76. benchling_v3_sdk/app_config_value/types/list_app_config_value_request_sort.py +7 -0
  77. benchling_v3_sdk/app_installation/__init__.py +34 -0
  78. benchling_v3_sdk/app_installation/client.py +497 -0
  79. benchling_v3_sdk/app_installation/raw_client.py +918 -0
  80. benchling_v3_sdk/app_installation/types/__init__.py +34 -0
  81. benchling_v3_sdk/app_installation/types/list_app_installation_request_sort.py +7 -0
  82. benchling_v3_sdk/app_session/__init__.py +49 -0
  83. benchling_v3_sdk/app_session/client.py +940 -0
  84. benchling_v3_sdk/app_session/raw_client.py +1982 -0
  85. benchling_v3_sdk/app_session/types/__init__.py +47 -0
  86. benchling_v3_sdk/app_session/types/batch_create_app_session_response.py +20 -0
  87. benchling_v3_sdk/app_session/types/batch_update_app_session_response.py +20 -0
  88. benchling_v3_sdk/app_session/types/list_app_session_request_sort.py +7 -0
  89. benchling_v3_sdk/app_session/types/update_app_session_input_status.py +5 -0
  90. benchling_v3_sdk/apps/__init__.py +5 -0
  91. benchling_v3_sdk/apps/helpers/__init__.py +1 -0
  92. benchling_v3_sdk/apps/helpers/webhook_helpers.py +229 -0
  93. benchling_v3_sdk/apps/helpers/webhook_verification.py +301 -0
  94. benchling_v3_sdk/assembly/__init__.py +34 -0
  95. benchling_v3_sdk/assembly/client.py +406 -0
  96. benchling_v3_sdk/assembly/raw_client.py +705 -0
  97. benchling_v3_sdk/assembly/types/__init__.py +34 -0
  98. benchling_v3_sdk/assembly/types/list_assembly_request_sort.py +7 -0
  99. benchling_v3_sdk/attachment/__init__.py +34 -0
  100. benchling_v3_sdk/attachment/client.py +410 -0
  101. benchling_v3_sdk/attachment/raw_client.py +910 -0
  102. benchling_v3_sdk/attachment/types/__init__.py +34 -0
  103. benchling_v3_sdk/attachment/types/batch_create_attachment_response.py +20 -0
  104. benchling_v3_sdk/audit_log/__init__.py +49 -0
  105. benchling_v3_sdk/audit_log/client.py +540 -0
  106. benchling_v3_sdk/audit_log/raw_client.py +1085 -0
  107. benchling_v3_sdk/audit_log/types/__init__.py +47 -0
  108. benchling_v3_sdk/audit_log/types/audit_log_export_input_format.py +5 -0
  109. benchling_v3_sdk/audit_log/types/get_task_for_export_audit_log_response.py +23 -0
  110. benchling_v3_sdk/audit_log/types/get_task_for_export_audit_log_response_status.py +7 -0
  111. benchling_v3_sdk/audit_log/types/list_audit_log_request_sort.py +5 -0
  112. benchling_v3_sdk/automation_template/__init__.py +34 -0
  113. benchling_v3_sdk/automation_template/client.py +655 -0
  114. benchling_v3_sdk/automation_template/raw_client.py +1314 -0
  115. benchling_v3_sdk/automation_template/types/__init__.py +36 -0
  116. benchling_v3_sdk/automation_template/types/list_automation_template_request_sort.py +7 -0
  117. benchling_v3_sdk/automation_template_data_frame_variable/__init__.py +34 -0
  118. benchling_v3_sdk/automation_template_data_frame_variable/client.py +392 -0
  119. benchling_v3_sdk/automation_template_data_frame_variable/raw_client.py +677 -0
  120. benchling_v3_sdk/automation_template_data_frame_variable/types/__init__.py +38 -0
  121. benchling_v3_sdk/automation_template_data_frame_variable/types/list_automation_template_data_frame_variable_request_sort.py +7 -0
  122. benchling_v3_sdk/automation_template_variable/__init__.py +34 -0
  123. benchling_v3_sdk/automation_template_variable/client.py +388 -0
  124. benchling_v3_sdk/automation_template_variable/raw_client.py +673 -0
  125. benchling_v3_sdk/automation_template_variable/types/__init__.py +36 -0
  126. benchling_v3_sdk/automation_template_variable/types/list_automation_template_variable_request_sort.py +7 -0
  127. benchling_v3_sdk/base_client.py +3479 -0
  128. benchling_v3_sdk/benchling_logging.py +62 -0
  129. benchling_v3_sdk/box/__init__.py +38 -0
  130. benchling_v3_sdk/box/client.py +1061 -0
  131. benchling_v3_sdk/box/raw_client.py +2167 -0
  132. benchling_v3_sdk/box/types/__init__.py +40 -0
  133. benchling_v3_sdk/box/types/batch_create_box_response.py +20 -0
  134. benchling_v3_sdk/box/types/batch_update_box_response.py +20 -0
  135. benchling_v3_sdk/box/types/list_box_request_sort.py +7 -0
  136. benchling_v3_sdk/box_schema/__init__.py +38 -0
  137. benchling_v3_sdk/box_schema/client.py +1186 -0
  138. benchling_v3_sdk/box_schema/raw_client.py +2366 -0
  139. benchling_v3_sdk/box_schema/types/__init__.py +40 -0
  140. benchling_v3_sdk/box_schema/types/batch_create_box_schema_response.py +20 -0
  141. benchling_v3_sdk/box_schema/types/batch_update_box_schema_response.py +20 -0
  142. benchling_v3_sdk/box_schema/types/list_box_schema_request_sort.py +7 -0
  143. benchling_v3_sdk/bulk_export/__init__.py +55 -0
  144. benchling_v3_sdk/bulk_export/client.py +289 -0
  145. benchling_v3_sdk/bulk_export/raw_client.py +644 -0
  146. benchling_v3_sdk/bulk_export/types/__init__.py +55 -0
  147. benchling_v3_sdk/bulk_export/types/create_bulk_export_response.py +26 -0
  148. benchling_v3_sdk/bulk_export/types/get_successful_results_bulk_export_response.py +26 -0
  149. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response.py +29 -0
  150. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response_status.py +5 -0
  151. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response_status_by_model_value.py +30 -0
  152. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response_status_by_model_value_status.py +7 -0
  153. benchling_v3_sdk/bulk_task/__init__.py +55 -0
  154. benchling_v3_sdk/bulk_task/client.py +272 -0
  155. benchling_v3_sdk/bulk_task/raw_client.py +625 -0
  156. benchling_v3_sdk/bulk_task/types/__init__.py +53 -0
  157. benchling_v3_sdk/bulk_task/types/get_bulk_task_response.py +27 -0
  158. benchling_v3_sdk/bulk_task/types/get_bulk_task_response_progress.py +26 -0
  159. benchling_v3_sdk/bulk_task/types/get_bulk_task_response_result.py +24 -0
  160. benchling_v3_sdk/bulk_task/types/get_bulk_task_response_status.py +7 -0
  161. benchling_v3_sdk/bulk_task/types/get_errors_bulk_task_response.py +31 -0
  162. benchling_v3_sdk/bulk_task/types/get_successful_results_bulk_task_response.py +38 -0
  163. benchling_v3_sdk/chart/__init__.py +38 -0
  164. benchling_v3_sdk/chart/client.py +1043 -0
  165. benchling_v3_sdk/chart/raw_client.py +2113 -0
  166. benchling_v3_sdk/chart/types/__init__.py +40 -0
  167. benchling_v3_sdk/chart/types/batch_create_chart_response.py +20 -0
  168. benchling_v3_sdk/chart/types/batch_update_chart_response.py +20 -0
  169. benchling_v3_sdk/chart/types/list_chart_request_sort.py +7 -0
  170. benchling_v3_sdk/client.py +225 -0
  171. benchling_v3_sdk/collaboration/__init__.py +52 -0
  172. benchling_v3_sdk/collaboration/client.py +1131 -0
  173. benchling_v3_sdk/collaboration/raw_client.py +2407 -0
  174. benchling_v3_sdk/collaboration/types/__init__.py +50 -0
  175. benchling_v3_sdk/collaboration/types/batch_create_collaboration_response.py +20 -0
  176. benchling_v3_sdk/collaboration/types/batch_delete_collaboration_response.py +20 -0
  177. benchling_v3_sdk/collaboration/types/batch_delete_collaboration_response_items_item.py +19 -0
  178. benchling_v3_sdk/collaboration/types/batch_update_collaboration_response.py +20 -0
  179. benchling_v3_sdk/collaboration/types/list_collaboration_request_sort.py +7 -0
  180. benchling_v3_sdk/config_import_history_entry/__init__.py +34 -0
  181. benchling_v3_sdk/config_import_history_entry/client.py +328 -0
  182. benchling_v3_sdk/config_import_history_entry/raw_client.py +593 -0
  183. benchling_v3_sdk/config_import_history_entry/types/__init__.py +36 -0
  184. benchling_v3_sdk/config_import_history_entry/types/list_config_import_history_entry_request_sort.py +5 -0
  185. benchling_v3_sdk/container/__init__.py +55 -0
  186. benchling_v3_sdk/container/client.py +1502 -0
  187. benchling_v3_sdk/container/raw_client.py +3116 -0
  188. benchling_v3_sdk/container/types/__init__.py +53 -0
  189. benchling_v3_sdk/container/types/batch_create_container_response.py +20 -0
  190. benchling_v3_sdk/container/types/batch_update_container_response.py +20 -0
  191. benchling_v3_sdk/container/types/get_task_for_transfer_container_response.py +23 -0
  192. benchling_v3_sdk/container/types/get_task_for_transfer_container_response_status.py +7 -0
  193. benchling_v3_sdk/container/types/list_container_request_sort.py +7 -0
  194. benchling_v3_sdk/container/types/update_container_input_restriction_status.py +7 -0
  195. benchling_v3_sdk/container_schema/__init__.py +42 -0
  196. benchling_v3_sdk/container_schema/client.py +1129 -0
  197. benchling_v3_sdk/container_schema/raw_client.py +2316 -0
  198. benchling_v3_sdk/container_schema/types/__init__.py +40 -0
  199. benchling_v3_sdk/container_schema/types/batch_create_container_schema_response.py +20 -0
  200. benchling_v3_sdk/container_schema/types/batch_update_container_schema_response.py +20 -0
  201. benchling_v3_sdk/container_schema/types/list_container_schema_request_sort.py +7 -0
  202. benchling_v3_sdk/core/__init__.py +132 -0
  203. benchling_v3_sdk/core/api_error.py +23 -0
  204. benchling_v3_sdk/core/client_wrapper.py +172 -0
  205. benchling_v3_sdk/core/datetime_utils.py +70 -0
  206. benchling_v3_sdk/core/file.py +67 -0
  207. benchling_v3_sdk/core/force_multipart.py +18 -0
  208. benchling_v3_sdk/core/http_client.py +940 -0
  209. benchling_v3_sdk/core/http_response.py +63 -0
  210. benchling_v3_sdk/core/http_sse/__init__.py +42 -0
  211. benchling_v3_sdk/core/http_sse/_api.py +455 -0
  212. benchling_v3_sdk/core/http_sse/_decoders.py +74 -0
  213. benchling_v3_sdk/core/http_sse/_exceptions.py +7 -0
  214. benchling_v3_sdk/core/http_sse/_models.py +17 -0
  215. benchling_v3_sdk/core/jsonable_encoder.py +133 -0
  216. benchling_v3_sdk/core/logging.py +107 -0
  217. benchling_v3_sdk/core/oauth_token_provider.py +77 -0
  218. benchling_v3_sdk/core/pagination.py +82 -0
  219. benchling_v3_sdk/core/parse_error.py +36 -0
  220. benchling_v3_sdk/core/pydantic_utilities.py +486 -0
  221. benchling_v3_sdk/core/query_encoder.py +58 -0
  222. benchling_v3_sdk/core/remove_none_from_dict.py +11 -0
  223. benchling_v3_sdk/core/request_options.py +40 -0
  224. benchling_v3_sdk/core/serialization.py +347 -0
  225. benchling_v3_sdk/custom_entity/__init__.py +49 -0
  226. benchling_v3_sdk/custom_entity/client.py +1301 -0
  227. benchling_v3_sdk/custom_entity/raw_client.py +2542 -0
  228. benchling_v3_sdk/custom_entity/types/__init__.py +47 -0
  229. benchling_v3_sdk/custom_entity/types/batch_create_custom_entity_response.py +20 -0
  230. benchling_v3_sdk/custom_entity/types/batch_update_custom_entity_response.py +20 -0
  231. benchling_v3_sdk/custom_entity/types/list_custom_entity_request_sort.py +7 -0
  232. benchling_v3_sdk/custom_entity/types/update_custom_entity_input_naming_strategy.py +16 -0
  233. benchling_v3_sdk/custom_entity_schema/__init__.py +67 -0
  234. benchling_v3_sdk/custom_entity_schema/client.py +1858 -0
  235. benchling_v3_sdk/custom_entity_schema/raw_client.py +3806 -0
  236. benchling_v3_sdk/custom_entity_schema/types/__init__.py +77 -0
  237. benchling_v3_sdk/custom_entity_schema/types/batch_create_custom_entity_schema_response.py +20 -0
  238. benchling_v3_sdk/custom_entity_schema/types/batch_update_custom_entity_schema_response.py +20 -0
  239. benchling_v3_sdk/custom_entity_schema/types/custom_entity_schema_set_field_definitions_input_field_definitions_item.py +123 -0
  240. benchling_v3_sdk/custom_entity_schema/types/get_task_for_apply_fieldset_custom_entity_schema_response.py +25 -0
  241. benchling_v3_sdk/custom_entity_schema/types/get_task_for_apply_fieldset_custom_entity_schema_response_status.py +7 -0
  242. benchling_v3_sdk/custom_entity_schema/types/get_task_for_set_field_definitions_custom_entity_schema_response.py +25 -0
  243. benchling_v3_sdk/custom_entity_schema/types/get_task_for_set_field_definitions_custom_entity_schema_response_status.py +7 -0
  244. benchling_v3_sdk/custom_entity_schema/types/list_custom_entity_schema_request_sort.py +7 -0
  245. benchling_v3_sdk/custom_entity_schema/types/update_custom_entity_schema_input_available_registration_naming_options_item.py +16 -0
  246. benchling_v3_sdk/custom_entity_schema/types/update_custom_entity_schema_input_icon_id.py +87 -0
  247. benchling_v3_sdk/data_frame/__init__.py +34 -0
  248. benchling_v3_sdk/data_frame/client.py +460 -0
  249. benchling_v3_sdk/data_frame/raw_client.py +753 -0
  250. benchling_v3_sdk/data_frame/types/__init__.py +34 -0
  251. benchling_v3_sdk/data_frame/types/list_data_frame_request_sort.py +7 -0
  252. benchling_v3_sdk/dataset/__init__.py +34 -0
  253. benchling_v3_sdk/dataset/client.py +436 -0
  254. benchling_v3_sdk/dataset/raw_client.py +749 -0
  255. benchling_v3_sdk/dataset/types/__init__.py +34 -0
  256. benchling_v3_sdk/dataset/types/list_dataset_request_sort.py +7 -0
  257. benchling_v3_sdk/dna_oligo/__init__.py +49 -0
  258. benchling_v3_sdk/dna_oligo/client.py +1815 -0
  259. benchling_v3_sdk/dna_oligo/raw_client.py +3217 -0
  260. benchling_v3_sdk/dna_oligo/types/__init__.py +47 -0
  261. benchling_v3_sdk/dna_oligo/types/batch_create_dna_oligo_response.py +20 -0
  262. benchling_v3_sdk/dna_oligo/types/batch_update_dna_oligo_response.py +20 -0
  263. benchling_v3_sdk/dna_oligo/types/list_dna_oligo_request_sort.py +7 -0
  264. benchling_v3_sdk/dna_oligo/types/update_dna_oligo_input_naming_strategy.py +16 -0
  265. benchling_v3_sdk/dna_oligo_schema/__init__.py +67 -0
  266. benchling_v3_sdk/dna_oligo_schema/client.py +1873 -0
  267. benchling_v3_sdk/dna_oligo_schema/raw_client.py +3826 -0
  268. benchling_v3_sdk/dna_oligo_schema/types/__init__.py +75 -0
  269. benchling_v3_sdk/dna_oligo_schema/types/batch_create_dna_oligo_schema_response.py +20 -0
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  1247. benchling_v3_sdk/types/automation_input_file_row_config.py +50 -0
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  1249. benchling_v3_sdk/types/automation_output_file_config.py +210 -0
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  1251. benchling_v3_sdk/types/automation_output_file_config_unpaginated_list.py +20 -0
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  1253. benchling_v3_sdk/types/automation_output_file_entity_schema_info_action_type.py +7 -0
  1254. benchling_v3_sdk/types/automation_output_file_entity_schema_info_naming_strategy.py +16 -0
  1255. benchling_v3_sdk/types/automation_output_file_inventory_schema_info.py +58 -0
  1256. benchling_v3_sdk/types/automation_output_file_named_column_type.py +42 -0
  1257. benchling_v3_sdk/types/automation_output_file_result_schema_info.py +46 -0
  1258. benchling_v3_sdk/types/automation_output_file_transformation_field_info.py +77 -0
  1259. benchling_v3_sdk/types/automation_output_file_transformation_field_info_type.py +7 -0
  1260. benchling_v3_sdk/types/automation_template.py +69 -0
  1261. benchling_v3_sdk/types/automation_template_data_frame_variable.py +67 -0
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  1269. benchling_v3_sdk/types/automation_transform_config.py +35 -0
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  1272. benchling_v3_sdk/types/base_create_message_block_input.py +42 -0
  1273. benchling_v3_sdk/types/base_create_message_block_input_type.py +5 -0
  1274. benchling_v3_sdk/types/base_field_definition.py +67 -0
  1275. benchling_v3_sdk/types/base_field_definition_derivation_type.py +5 -0
  1276. benchling_v3_sdk/types/base_field_definition_type.py +39 -0
  1277. benchling_v3_sdk/types/base_system_category_configuration.py +31 -0
  1278. benchling_v3_sdk/types/benchling_item_content_input.py +40 -0
  1279. benchling_v3_sdk/types/benchling_item_content_input_content_type.py +5 -0
  1280. benchling_v3_sdk/types/benchling_item_document_content.py +44 -0
  1281. benchling_v3_sdk/types/blob_link_cell_evaluation_value.py +36 -0
  1282. benchling_v3_sdk/types/blob_link_field_definition.py +55 -0
  1283. benchling_v3_sdk/types/blob_link_field_definition_derivation_type.py +5 -0
  1284. benchling_v3_sdk/types/boolean_app_config_spec.py +30 -0
  1285. benchling_v3_sdk/types/boolean_app_config_value.py +28 -0
  1286. benchling_v3_sdk/types/boolean_cell_evaluation_value.py +31 -0
  1287. benchling_v3_sdk/types/boolean_field_definition.py +52 -0
  1288. benchling_v3_sdk/types/boolean_field_definition_derivation_type.py +5 -0
  1289. benchling_v3_sdk/types/boolean_value.py +31 -0
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  1292. benchling_v3_sdk/types/box_schema.py +77 -0
  1293. benchling_v3_sdk/types/box_schema_paginated_list.py +25 -0
  1294. benchling_v3_sdk/types/box_schema_ref.py +24 -0
  1295. benchling_v3_sdk/types/bulk_import.py +31 -0
  1296. benchling_v3_sdk/types/bulk_molecule_with_parent_input.py +80 -0
  1297. benchling_v3_sdk/types/bulk_molecule_with_parent_input_naming_strategy.py +16 -0
  1298. benchling_v3_sdk/types/button_ui_block.py +30 -0
  1299. benchling_v3_sdk/types/button_ui_block_input.py +23 -0
  1300. benchling_v3_sdk/types/button_ui_block_input_type.py +5 -0
  1301. benchling_v3_sdk/types/canvas_feature_spec.py +34 -0
  1302. benchling_v3_sdk/types/canvas_feature_spec_locations_item.py +5 -0
  1303. benchling_v3_sdk/types/caption.py +34 -0
  1304. benchling_v3_sdk/types/caption_input.py +40 -0
  1305. benchling_v3_sdk/types/cell_error.py +49 -0
  1306. benchling_v3_sdk/types/cell_error_error_type.py +5 -0
  1307. benchling_v3_sdk/types/chain_linked_schema.py +27 -0
  1308. benchling_v3_sdk/types/chain_linked_schema_input.py +36 -0
  1309. benchling_v3_sdk/types/chart.py +135 -0
  1310. benchling_v3_sdk/types/chart_library.py +5 -0
  1311. benchling_v3_sdk/types/chart_paginated_list.py +25 -0
  1312. benchling_v3_sdk/types/chat_source_input.py +30 -0
  1313. benchling_v3_sdk/types/chat_source_input_type.py +5 -0
  1314. benchling_v3_sdk/types/checkout_record.py +44 -0
  1315. benchling_v3_sdk/types/checkout_record_input.py +26 -0
  1316. benchling_v3_sdk/types/checkout_record_input_status.py +5 -0
  1317. benchling_v3_sdk/types/checkout_record_status.py +5 -0
  1318. benchling_v3_sdk/types/chem_simple_polymer.py +42 -0
  1319. benchling_v3_sdk/types/chemical_structure_input.py +30 -0
  1320. benchling_v3_sdk/types/chemical_structure_input_structure_format.py +5 -0
  1321. benchling_v3_sdk/types/chip_ui_block.py +29 -0
  1322. benchling_v3_sdk/types/chip_ui_block_input.py +22 -0
  1323. benchling_v3_sdk/types/chip_ui_block_input_type.py +5 -0
  1324. benchling_v3_sdk/types/clustal_o_options_input.py +79 -0
  1325. benchling_v3_sdk/types/code_block_content_input.py +28 -0
  1326. benchling_v3_sdk/types/code_block_content_input_content_type.py +5 -0
  1327. benchling_v3_sdk/types/code_block_document_content.py +31 -0
  1328. benchling_v3_sdk/types/collaboratable_ref.py +24 -0
  1329. benchling_v3_sdk/types/collaboration.py +60 -0
  1330. benchling_v3_sdk/types/collaboration_collaborator_info.py +8 -0
  1331. benchling_v3_sdk/types/collaboration_paginated_list.py +25 -0
  1332. benchling_v3_sdk/types/column_mapping.py +25 -0
  1333. benchling_v3_sdk/types/complex_polymer_connection.py +76 -0
  1334. benchling_v3_sdk/types/complex_polymer_connection_attachment_style.py +5 -0
  1335. benchling_v3_sdk/types/complex_polymer_connection_connection_type.py +5 -0
  1336. benchling_v3_sdk/types/complex_polymer_connection_covalent_bond_type.py +5 -0
  1337. benchling_v3_sdk/types/complex_polymer_resolved_attachment.py +49 -0
  1338. benchling_v3_sdk/types/complex_polymer_structure.py +61 -0
  1339. benchling_v3_sdk/types/complex_polymer_structure_simple_polymers_item.py +11 -0
  1340. benchling_v3_sdk/types/concentration_layer_input.py +31 -0
  1341. benchling_v3_sdk/types/concentration_well_input.py +26 -0
  1342. benchling_v3_sdk/types/condition_order_for_pmdv_input.py +26 -0
  1343. benchling_v3_sdk/types/config_import_history_entry.py +65 -0
  1344. benchling_v3_sdk/types/config_import_history_entry_paginated_list.py +25 -0
  1345. benchling_v3_sdk/types/confirmation_method_by_param_version_id.py +41 -0
  1346. benchling_v3_sdk/types/confirmation_method_by_param_version_id_confirmation_method.py +5 -0
  1347. benchling_v3_sdk/types/confirmation_method_by_param_version_id_input.py +31 -0
  1348. benchling_v3_sdk/types/confirmation_method_by_param_version_id_input_confirmation_method.py +7 -0
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  1350. benchling_v3_sdk/types/connection_side_modification_type.py +5 -0
  1351. benchling_v3_sdk/types/connectors_input.py +23 -0
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  1355. benchling_v3_sdk/types/container_content.py +64 -0
  1356. benchling_v3_sdk/types/container_name_template.py +29 -0
  1357. benchling_v3_sdk/types/container_name_template_input.py +26 -0
  1358. benchling_v3_sdk/types/container_name_template_part.py +35 -0
  1359. benchling_v3_sdk/types/container_name_template_part_configuration.py +10 -0
  1360. benchling_v3_sdk/types/container_name_template_part_input.py +22 -0
  1361. benchling_v3_sdk/types/container_name_template_part_input_configuration.py +10 -0
  1362. benchling_v3_sdk/types/container_name_template_part_input_type.py +30 -0
  1363. benchling_v3_sdk/types/container_name_template_part_type.py +34 -0
  1364. benchling_v3_sdk/types/container_paginated_list.py +25 -0
  1365. benchling_v3_sdk/types/container_ref.py +24 -0
  1366. benchling_v3_sdk/types/container_schema.py +75 -0
  1367. benchling_v3_sdk/types/container_schema_paginated_list.py +25 -0
  1368. benchling_v3_sdk/types/container_schema_ref.py +24 -0
  1369. benchling_v3_sdk/types/container_unpaginated_list.py +20 -0
  1370. benchling_v3_sdk/types/content_item_input.py +73 -0
  1371. benchling_v3_sdk/types/create_aa_monomer_input.py +56 -0
  1372. benchling_v3_sdk/types/create_aa_monomer_input_natural_analog.py +35 -0
  1373. benchling_v3_sdk/types/create_aa_part_link_field_definition_input.py +45 -0
  1374. benchling_v3_sdk/types/create_aa_part_link_field_definition_input_type.py +5 -0
  1375. benchling_v3_sdk/types/create_aa_sequence_input.py +107 -0
  1376. benchling_v3_sdk/types/create_aa_sequence_input_naming_strategy.py +16 -0
  1377. benchling_v3_sdk/types/create_aa_sequence_link_field_definition_input.py +45 -0
  1378. benchling_v3_sdk/types/create_aa_sequence_link_field_definition_input_type.py +5 -0
  1379. benchling_v3_sdk/types/create_aa_sequence_schema_constraint_input.py +33 -0
  1380. benchling_v3_sdk/types/create_aa_sequence_schema_constraint_input_unique_residues.py +7 -0
  1381. benchling_v3_sdk/types/create_aa_sequence_schema_input.py +149 -0
  1382. benchling_v3_sdk/types/create_aa_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  1383. benchling_v3_sdk/types/create_aa_sequence_schema_input_field_definitions_item.py +761 -0
  1384. benchling_v3_sdk/types/create_aa_sequence_schema_input_icon_id.py +7 -0
  1385. benchling_v3_sdk/types/create_antibody_link_field_definition_input.py +45 -0
  1386. benchling_v3_sdk/types/create_antibody_link_field_definition_input_type.py +5 -0
  1387. benchling_v3_sdk/types/create_any_entity_link_field_definition_input.py +29 -0
  1388. benchling_v3_sdk/types/create_any_entity_link_field_definition_input_type.py +5 -0
  1389. benchling_v3_sdk/types/create_app_canvas_input.py +75 -0
  1390. benchling_v3_sdk/types/create_app_session_input.py +51 -0
  1391. benchling_v3_sdk/types/create_assay_request_link_field_definition_input.py +32 -0
  1392. benchling_v3_sdk/types/create_assay_request_link_field_definition_input_type.py +5 -0
  1393. benchling_v3_sdk/types/create_assay_result_link_field_definition_input.py +32 -0
  1394. benchling_v3_sdk/types/create_assay_result_link_field_definition_input_type.py +5 -0
  1395. benchling_v3_sdk/types/create_assay_run_link_field_definition_input.py +32 -0
  1396. benchling_v3_sdk/types/create_assay_run_link_field_definition_input_type.py +5 -0
  1397. benchling_v3_sdk/types/create_attachment_input.py +52 -0
  1398. benchling_v3_sdk/types/create_base_unit_input.py +21 -0
  1399. benchling_v3_sdk/types/create_blob_link_field_definition_input.py +29 -0
  1400. benchling_v3_sdk/types/create_blob_link_field_definition_input_type.py +5 -0
  1401. benchling_v3_sdk/types/create_boolean_field_definition_input.py +28 -0
  1402. benchling_v3_sdk/types/create_boolean_field_definition_input_type.py +5 -0
  1403. benchling_v3_sdk/types/create_box_input.py +35 -0
  1404. benchling_v3_sdk/types/create_box_schema_input.py +95 -0
  1405. benchling_v3_sdk/types/create_box_schema_input_field_definitions_item.py +611 -0
  1406. benchling_v3_sdk/types/create_chart_input.py +92 -0
  1407. benchling_v3_sdk/types/create_chart_input_library.py +5 -0
  1408. benchling_v3_sdk/types/create_collaboration_input.py +33 -0
  1409. benchling_v3_sdk/types/create_collaboration_input_collaborator.py +8 -0
  1410. benchling_v3_sdk/types/create_complex_polymer_schema_field_spec_input.py +26 -0
  1411. benchling_v3_sdk/types/create_container_input.py +49 -0
  1412. benchling_v3_sdk/types/create_container_input_restriction_status.py +7 -0
  1413. benchling_v3_sdk/types/create_container_schema_input.py +73 -0
  1414. benchling_v3_sdk/types/create_container_schema_input_field_definitions_item.py +611 -0
  1415. benchling_v3_sdk/types/create_custom_entity_input.py +79 -0
  1416. benchling_v3_sdk/types/create_custom_entity_input_naming_strategy.py +16 -0
  1417. benchling_v3_sdk/types/create_custom_entity_link_field_definition_input.py +45 -0
  1418. benchling_v3_sdk/types/create_custom_entity_link_field_definition_input_type.py +5 -0
  1419. benchling_v3_sdk/types/create_custom_entity_schema_input.py +108 -0
  1420. benchling_v3_sdk/types/create_custom_entity_schema_input_available_registration_naming_options_item.py +16 -0
  1421. benchling_v3_sdk/types/create_custom_entity_schema_input_field_definitions_item.py +734 -0
  1422. benchling_v3_sdk/types/create_custom_entity_schema_input_icon_id.py +87 -0
  1423. benchling_v3_sdk/types/create_date_field_definition_input.py +28 -0
  1424. benchling_v3_sdk/types/create_date_field_definition_input_type.py +5 -0
  1425. benchling_v3_sdk/types/create_date_time_field_definition_input.py +28 -0
  1426. benchling_v3_sdk/types/create_date_time_field_definition_input_type.py +5 -0
  1427. benchling_v3_sdk/types/create_dna_oligo_input.py +129 -0
  1428. benchling_v3_sdk/types/create_dna_oligo_input_naming_strategy.py +16 -0
  1429. benchling_v3_sdk/types/create_dna_oligo_link_field_definition_input.py +45 -0
  1430. benchling_v3_sdk/types/create_dna_oligo_link_field_definition_input_type.py +5 -0
  1431. benchling_v3_sdk/types/create_dna_oligo_schema_input.py +115 -0
  1432. benchling_v3_sdk/types/create_dna_oligo_schema_input_available_registration_naming_options_item.py +16 -0
  1433. benchling_v3_sdk/types/create_dna_oligo_schema_input_field_definitions_item.py +734 -0
  1434. benchling_v3_sdk/types/create_dna_oligo_schema_input_icon_id.py +7 -0
  1435. benchling_v3_sdk/types/create_dna_part_link_field_definition_input.py +45 -0
  1436. benchling_v3_sdk/types/create_dna_part_link_field_definition_input_type.py +5 -0
  1437. benchling_v3_sdk/types/create_dna_sequence_input.py +131 -0
  1438. benchling_v3_sdk/types/create_dna_sequence_input_naming_strategy.py +16 -0
  1439. benchling_v3_sdk/types/create_dna_sequence_link_field_definition_input.py +45 -0
  1440. benchling_v3_sdk/types/create_dna_sequence_link_field_definition_input_type.py +5 -0
  1441. benchling_v3_sdk/types/create_dna_sequence_schema_input.py +117 -0
  1442. benchling_v3_sdk/types/create_dna_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  1443. benchling_v3_sdk/types/create_dna_sequence_schema_input_field_definitions_item.py +815 -0
  1444. benchling_v3_sdk/types/create_dna_sequence_schema_input_icon_id.py +8 -0
  1445. benchling_v3_sdk/types/create_dropdown_input.py +32 -0
  1446. benchling_v3_sdk/types/create_dropdown_link_field_definition_input.py +30 -0
  1447. benchling_v3_sdk/types/create_dropdown_link_field_definition_input_type.py +5 -0
  1448. benchling_v3_sdk/types/create_dropdown_option_input.py +19 -0
  1449. benchling_v3_sdk/types/create_entity_schema_constraint_input.py +25 -0
  1450. benchling_v3_sdk/types/create_entry_content_input.py +36 -0
  1451. benchling_v3_sdk/types/create_entry_content_input_content_type.py +7 -0
  1452. benchling_v3_sdk/types/create_entry_input.py +91 -0
  1453. benchling_v3_sdk/types/create_entry_link_field_definition_input.py +29 -0
  1454. benchling_v3_sdk/types/create_entry_link_field_definition_input_type.py +5 -0
  1455. benchling_v3_sdk/types/create_entry_schema_input.py +71 -0
  1456. benchling_v3_sdk/types/create_entry_schema_input_field_definitions_item.py +734 -0
  1457. benchling_v3_sdk/types/create_enzyme_list_input.py +52 -0
  1458. benchling_v3_sdk/types/create_equipment_link_field_definition_input.py +45 -0
  1459. benchling_v3_sdk/types/create_equipment_link_field_definition_input_type.py +5 -0
  1460. benchling_v3_sdk/types/create_equipment_schema_input.py +106 -0
  1461. benchling_v3_sdk/types/create_equipment_schema_input_available_registration_naming_options_item.py +16 -0
  1462. benchling_v3_sdk/types/create_equipment_schema_input_field_definitions_item.py +734 -0
  1463. benchling_v3_sdk/types/create_equipment_schema_input_icon_id.py +7 -0
  1464. benchling_v3_sdk/types/create_feature_library_input.py +40 -0
  1465. benchling_v3_sdk/types/create_feature_library_item_input.py +71 -0
  1466. benchling_v3_sdk/types/create_feature_library_item_input_match_type.py +5 -0
  1467. benchling_v3_sdk/types/create_fieldset_constraint_input.py +36 -0
  1468. benchling_v3_sdk/types/create_fieldset_constraint_input_unique_residues.py +5 -0
  1469. benchling_v3_sdk/types/create_fieldset_input.py +67 -0
  1470. benchling_v3_sdk/types/create_fieldset_input_available_registration_naming_options_item.py +16 -0
  1471. benchling_v3_sdk/types/create_fieldset_input_field_definitions_item.py +734 -0
  1472. benchling_v3_sdk/types/create_fieldset_input_item_type.py +23 -0
  1473. benchling_v3_sdk/types/create_fieldset_link_field_definition_input.py +45 -0
  1474. benchling_v3_sdk/types/create_fieldset_link_field_definition_input_type.py +5 -0
  1475. benchling_v3_sdk/types/create_file_attachment_input.py +28 -0
  1476. benchling_v3_sdk/types/create_file_attachment_input_content_type.py +5 -0
  1477. benchling_v3_sdk/types/create_file_input.py +25 -0
  1478. benchling_v3_sdk/types/create_file_message_block_input.py +41 -0
  1479. benchling_v3_sdk/types/create_file_message_block_input_type.py +5 -0
  1480. benchling_v3_sdk/types/create_float_field_definition_input.py +40 -0
  1481. benchling_v3_sdk/types/create_float_field_definition_input_type.py +5 -0
  1482. benchling_v3_sdk/types/create_folder_input.py +23 -0
  1483. benchling_v3_sdk/types/create_formula_unit_term_input.py +20 -0
  1484. benchling_v3_sdk/types/create_integer_field_definition_input.py +37 -0
  1485. benchling_v3_sdk/types/create_integer_field_definition_input_type.py +5 -0
  1486. benchling_v3_sdk/types/create_json_field_definition_input.py +26 -0
  1487. benchling_v3_sdk/types/create_library_parameter_definition_input.py +66 -0
  1488. benchling_v3_sdk/types/create_library_parameter_definition_input_data_type.py +7 -0
  1489. benchling_v3_sdk/types/create_location_input.py +32 -0
  1490. benchling_v3_sdk/types/create_location_schema_input.py +73 -0
  1491. benchling_v3_sdk/types/create_location_schema_input_field_definitions_item.py +611 -0
  1492. benchling_v3_sdk/types/create_long_text_field_definition_input.py +28 -0
  1493. benchling_v3_sdk/types/create_long_text_field_definition_input_type.py +5 -0
  1494. benchling_v3_sdk/types/create_matrix_plate_input.py +52 -0
  1495. benchling_v3_sdk/types/create_matrix_plate_schema_input.py +99 -0
  1496. benchling_v3_sdk/types/create_matrix_plate_schema_input_field_definitions_item.py +611 -0
  1497. benchling_v3_sdk/types/create_mixture_link_field_definition_input.py +45 -0
  1498. benchling_v3_sdk/types/create_mixture_link_field_definition_input_type.py +5 -0
  1499. benchling_v3_sdk/types/create_mixture_schema_input.py +147 -0
  1500. benchling_v3_sdk/types/create_mixture_schema_input_available_registration_naming_options_item.py +16 -0
  1501. benchling_v3_sdk/types/create_mixture_schema_input_field_definitions_item.py +734 -0
  1502. benchling_v3_sdk/types/create_mixture_schema_input_icon_id.py +8 -0
  1503. benchling_v3_sdk/types/create_molecule_input.py +85 -0
  1504. benchling_v3_sdk/types/create_molecule_input_naming_strategy.py +16 -0
  1505. benchling_v3_sdk/types/create_molecule_link_field_definition_input.py +45 -0
  1506. benchling_v3_sdk/types/create_molecule_link_field_definition_input_type.py +5 -0
  1507. benchling_v3_sdk/types/create_molecule_schema_constraint_input.py +30 -0
  1508. benchling_v3_sdk/types/create_molecule_schema_input.py +106 -0
  1509. benchling_v3_sdk/types/create_molecule_schema_input_available_registration_naming_options_item.py +16 -0
  1510. benchling_v3_sdk/types/create_molecule_schema_input_field_definitions_item.py +734 -0
  1511. benchling_v3_sdk/types/create_molecule_schema_input_icon_id.py +7 -0
  1512. benchling_v3_sdk/types/create_oligo_conjugate_link_field_definition_input.py +45 -0
  1513. benchling_v3_sdk/types/create_oligo_conjugate_link_field_definition_input_type.py +5 -0
  1514. benchling_v3_sdk/types/create_oligo_conjugate_schema_input.py +121 -0
  1515. benchling_v3_sdk/types/create_oligo_conjugate_schema_input_available_registration_naming_options_item.py +16 -0
  1516. benchling_v3_sdk/types/create_oligo_conjugate_schema_input_field_definitions_item.py +734 -0
  1517. benchling_v3_sdk/types/create_oligo_conjugate_schema_input_icon_id.py +19 -0
  1518. benchling_v3_sdk/types/create_oligo_duplex_link_field_definition_input.py +45 -0
  1519. benchling_v3_sdk/types/create_oligo_duplex_link_field_definition_input_type.py +5 -0
  1520. benchling_v3_sdk/types/create_oligo_duplex_schema_input.py +124 -0
  1521. benchling_v3_sdk/types/create_oligo_duplex_schema_input_available_registration_naming_options_item.py +16 -0
  1522. benchling_v3_sdk/types/create_oligo_duplex_schema_input_field_definitions_item.py +734 -0
  1523. benchling_v3_sdk/types/create_oligo_duplex_schema_input_icon_id.py +7 -0
  1524. benchling_v3_sdk/types/create_organization_input.py +20 -0
  1525. benchling_v3_sdk/types/create_plate_design_template_input.py +27 -0
  1526. benchling_v3_sdk/types/create_plate_record_input.py +86 -0
  1527. benchling_v3_sdk/types/create_procedure_run_plan_condition_input.py +71 -0
  1528. benchling_v3_sdk/types/create_procedure_run_plan_input.py +73 -0
  1529. benchling_v3_sdk/types/create_procedure_run_plan_input_data_entry_mode.py +7 -0
  1530. benchling_v3_sdk/types/create_project_input.py +31 -0
  1531. benchling_v3_sdk/types/create_protein_format_input.py +36 -0
  1532. benchling_v3_sdk/types/create_protein_input.py +107 -0
  1533. benchling_v3_sdk/types/create_protein_input_naming_strategy.py +16 -0
  1534. benchling_v3_sdk/types/create_protein_schema_input.py +141 -0
  1535. benchling_v3_sdk/types/create_protein_schema_input_available_registration_naming_options_item.py +16 -0
  1536. benchling_v3_sdk/types/create_protein_schema_input_field_definitions_item.py +734 -0
  1537. benchling_v3_sdk/types/create_registration_table_input.py +27 -0
  1538. benchling_v3_sdk/types/create_registration_table_input_content_type.py +5 -0
  1539. benchling_v3_sdk/types/create_request_v2definition_input.py +58 -0
  1540. benchling_v3_sdk/types/create_result_input.py +29 -0
  1541. benchling_v3_sdk/types/create_result_table_input.py +27 -0
  1542. benchling_v3_sdk/types/create_result_table_input_content_type.py +5 -0
  1543. benchling_v3_sdk/types/create_rna_oligo_input.py +129 -0
  1544. benchling_v3_sdk/types/create_rna_oligo_input_naming_strategy.py +16 -0
  1545. benchling_v3_sdk/types/create_rna_oligo_link_field_definition_input.py +45 -0
  1546. benchling_v3_sdk/types/create_rna_oligo_link_field_definition_input_type.py +5 -0
  1547. benchling_v3_sdk/types/create_rna_oligo_schema_input.py +115 -0
  1548. benchling_v3_sdk/types/create_rna_oligo_schema_input_available_registration_naming_options_item.py +16 -0
  1549. benchling_v3_sdk/types/create_rna_oligo_schema_input_field_definitions_item.py +734 -0
  1550. benchling_v3_sdk/types/create_rna_oligo_schema_input_icon_id.py +7 -0
  1551. benchling_v3_sdk/types/create_rna_part_link_field_definition_input.py +45 -0
  1552. benchling_v3_sdk/types/create_rna_part_link_field_definition_input_type.py +5 -0
  1553. benchling_v3_sdk/types/create_rna_sequence_input.py +148 -0
  1554. benchling_v3_sdk/types/create_rna_sequence_input_naming_strategy.py +16 -0
  1555. benchling_v3_sdk/types/create_rna_sequence_link_field_definition_input.py +45 -0
  1556. benchling_v3_sdk/types/create_rna_sequence_link_field_definition_input_type.py +5 -0
  1557. benchling_v3_sdk/types/create_rna_sequence_schema_input.py +117 -0
  1558. benchling_v3_sdk/types/create_rna_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  1559. benchling_v3_sdk/types/create_rna_sequence_schema_input_field_definitions_item.py +788 -0
  1560. benchling_v3_sdk/types/create_rna_sequence_schema_input_icon_id.py +7 -0
  1561. benchling_v3_sdk/types/create_salt_input.py +32 -0
  1562. benchling_v3_sdk/types/create_scratch_file_input.py +20 -0
  1563. benchling_v3_sdk/types/create_sequence_schema_constraint_input.py +31 -0
  1564. benchling_v3_sdk/types/create_sequence_schema_constraint_input_unique_residues.py +5 -0
  1565. benchling_v3_sdk/types/create_solvent_input.py +32 -0
  1566. benchling_v3_sdk/types/create_storable_link_field_definition_input.py +32 -0
  1567. benchling_v3_sdk/types/create_storable_link_field_definition_input_type.py +5 -0
  1568. benchling_v3_sdk/types/create_study_design_entry_input.py +43 -0
  1569. benchling_v3_sdk/types/create_study_input.py +101 -0
  1570. benchling_v3_sdk/types/create_study_item_association_input.py +22 -0
  1571. benchling_v3_sdk/types/create_study_schema_input.py +121 -0
  1572. benchling_v3_sdk/types/create_study_schema_input_field_definitions_item.py +607 -0
  1573. benchling_v3_sdk/types/create_study_schema_input_id_generation_mode.py +7 -0
  1574. benchling_v3_sdk/types/create_study_schema_input_study_type.py +7 -0
  1575. benchling_v3_sdk/types/create_system_category_link_field_definition_input.py +32 -0
  1576. benchling_v3_sdk/types/create_system_category_link_field_definition_input_type.py +5 -0
  1577. benchling_v3_sdk/types/create_test_definition_input.py +52 -0
  1578. benchling_v3_sdk/types/create_text_field_definition_input.py +28 -0
  1579. benchling_v3_sdk/types/create_text_field_definition_input_type.py +5 -0
  1580. benchling_v3_sdk/types/create_text_input.py +25 -0
  1581. benchling_v3_sdk/types/create_text_input_content_type.py +5 -0
  1582. benchling_v3_sdk/types/create_text_message_block_input.py +21 -0
  1583. benchling_v3_sdk/types/create_text_message_block_input_type.py +5 -0
  1584. benchling_v3_sdk/types/create_transcription_link_field_definition_input.py +45 -0
  1585. benchling_v3_sdk/types/create_transcription_link_field_definition_input_type.py +5 -0
  1586. benchling_v3_sdk/types/create_translation_link_field_definition_input.py +45 -0
  1587. benchling_v3_sdk/types/create_translation_link_field_definition_input_type.py +5 -0
  1588. benchling_v3_sdk/types/create_unit_input.py +33 -0
  1589. benchling_v3_sdk/types/create_unit_type_input.py +53 -0
  1590. benchling_v3_sdk/types/create_unit_type_term_input.py +21 -0
  1591. benchling_v3_sdk/types/create_unit_type_term_input_value.py +7 -0
  1592. benchling_v3_sdk/types/create_user_input.py +26 -0
  1593. benchling_v3_sdk/types/create_warehouse_credential_output.py +40 -0
  1594. benchling_v3_sdk/types/create_well_plate_input.py +47 -0
  1595. benchling_v3_sdk/types/create_well_plate_schema_input.py +99 -0
  1596. benchling_v3_sdk/types/create_well_plate_schema_input_field_definitions_item.py +611 -0
  1597. benchling_v3_sdk/types/create_workflow_output_input.py +41 -0
  1598. benchling_v3_sdk/types/create_workflow_output_schema_input.py +36 -0
  1599. benchling_v3_sdk/types/create_workflow_output_schema_input_field_definitions_item.py +734 -0
  1600. benchling_v3_sdk/types/create_workflow_task_group_input.py +30 -0
  1601. benchling_v3_sdk/types/create_workflow_task_input.py +68 -0
  1602. benchling_v3_sdk/types/create_workflow_task_schema_input.py +188 -0
  1603. benchling_v3_sdk/types/create_workflow_task_schema_input_field_definitions_item.py +734 -0
  1604. benchling_v3_sdk/types/create_worklist_input.py +28 -0
  1605. benchling_v3_sdk/types/create_worklist_input_item_type.py +5 -0
  1606. benchling_v3_sdk/types/custom_entity.py +105 -0
  1607. benchling_v3_sdk/types/custom_entity_created_webhook_envelope_v3.py +25 -0
  1608. benchling_v3_sdk/types/custom_entity_created_webhook_v3.py +64 -0
  1609. benchling_v3_sdk/types/custom_entity_created_webhook_v3type.py +5 -0
  1610. benchling_v3_sdk/types/custom_entity_link_field_definition.py +74 -0
  1611. benchling_v3_sdk/types/custom_entity_link_field_definition_derivation_type.py +7 -0
  1612. benchling_v3_sdk/types/custom_entity_paginated_list.py +25 -0
  1613. benchling_v3_sdk/types/custom_entity_ref.py +24 -0
  1614. benchling_v3_sdk/types/custom_entity_schema.py +94 -0
  1615. benchling_v3_sdk/types/custom_entity_schema_available_registration_naming_options_item.py +16 -0
  1616. benchling_v3_sdk/types/custom_entity_schema_containable_type.py +5 -0
  1617. benchling_v3_sdk/types/custom_entity_schema_icon_id.py +87 -0
  1618. benchling_v3_sdk/types/custom_entity_schema_paginated_list.py +25 -0
  1619. benchling_v3_sdk/types/custom_entity_schema_ref.py +24 -0
  1620. benchling_v3_sdk/types/custom_entity_updated_webhook_envelope_v3.py +25 -0
  1621. benchling_v3_sdk/types/custom_entity_updated_webhook_v3.py +69 -0
  1622. benchling_v3_sdk/types/custom_entity_updated_webhook_v3type.py +5 -0
  1623. benchling_v3_sdk/types/custom_field.py +33 -0
  1624. benchling_v3_sdk/types/custom_field_input.py +27 -0
  1625. benchling_v3_sdk/types/custom_transform.py +43 -0
  1626. benchling_v3_sdk/types/custom_transform_type.py +23 -0
  1627. benchling_v3_sdk/types/custom_transformation_properties.py +36 -0
  1628. benchling_v3_sdk/types/cut_site_detail.py +41 -0
  1629. benchling_v3_sdk/types/data_frame.py +56 -0
  1630. benchling_v3_sdk/types/data_frame_column.py +35 -0
  1631. benchling_v3_sdk/types/data_frame_manifest_item.py +33 -0
  1632. benchling_v3_sdk/types/data_frame_paginated_list.py +25 -0
  1633. benchling_v3_sdk/types/data_frame_ref.py +24 -0
  1634. benchling_v3_sdk/types/data_frame_upload_status.py +7 -0
  1635. benchling_v3_sdk/types/data_parameter_value_plan.py +35 -0
  1636. benchling_v3_sdk/types/data_parameter_value_plan_input.py +35 -0
  1637. benchling_v3_sdk/types/dataset.py +52 -0
  1638. benchling_v3_sdk/types/dataset_paginated_list.py +25 -0
  1639. benchling_v3_sdk/types/dataset_ref.py +24 -0
  1640. benchling_v3_sdk/types/date_app_config_spec.py +30 -0
  1641. benchling_v3_sdk/types/date_app_config_value.py +29 -0
  1642. benchling_v3_sdk/types/date_cell_evaluation_value.py +32 -0
  1643. benchling_v3_sdk/types/date_field_definition.py +52 -0
  1644. benchling_v3_sdk/types/date_field_definition_derivation_type.py +5 -0
  1645. benchling_v3_sdk/types/date_time_app_config_spec.py +30 -0
  1646. benchling_v3_sdk/types/date_time_app_config_value.py +28 -0
  1647. benchling_v3_sdk/types/date_time_cell_evaluation_value.py +31 -0
  1648. benchling_v3_sdk/types/date_time_field_definition.py +52 -0
  1649. benchling_v3_sdk/types/date_time_field_definition_derivation_type.py +5 -0
  1650. benchling_v3_sdk/types/date_time_value.py +31 -0
  1651. benchling_v3_sdk/types/date_value.py +32 -0
  1652. benchling_v3_sdk/types/decimal_value.py +40 -0
  1653. benchling_v3_sdk/types/delete_collaboration_input_with_path_params.py +19 -0
  1654. benchling_v3_sdk/types/delete_document_parts_input.py +36 -0
  1655. benchling_v3_sdk/types/delete_document_parts_input_operation_type.py +5 -0
  1656. benchling_v3_sdk/types/delete_folder_input_with_path_params.py +19 -0
  1657. benchling_v3_sdk/types/delete_nucleotide_alignment_input_with_path_params.py +22 -0
  1658. benchling_v3_sdk/types/delete_procedure_method_execution_instance_association_input_with_path_params.py +19 -0
  1659. benchling_v3_sdk/types/delete_study_item_association_input_with_path_params.py +19 -0
  1660. benchling_v3_sdk/types/delete_worklist_input_with_path_params.py +19 -0
  1661. benchling_v3_sdk/types/dna_chain_configuration_input.py +26 -0
  1662. benchling_v3_sdk/types/dna_chain_configuration_input_system_category_id.py +5 -0
  1663. benchling_v3_sdk/types/dna_domain_configuration_input.py +26 -0
  1664. benchling_v3_sdk/types/dna_domain_configuration_input_system_category_id.py +5 -0
  1665. benchling_v3_sdk/types/dna_oligo.py +161 -0
  1666. benchling_v3_sdk/types/dna_oligo_created_webhook_envelope_v3.py +25 -0
  1667. benchling_v3_sdk/types/dna_oligo_created_webhook_v3.py +64 -0
  1668. benchling_v3_sdk/types/dna_oligo_created_webhook_v3type.py +5 -0
  1669. benchling_v3_sdk/types/dna_oligo_link_field_definition.py +81 -0
  1670. benchling_v3_sdk/types/dna_oligo_link_field_definition_derivation_type.py +5 -0
  1671. benchling_v3_sdk/types/dna_oligo_paginated_list.py +25 -0
  1672. benchling_v3_sdk/types/dna_oligo_schema.py +107 -0
  1673. benchling_v3_sdk/types/dna_oligo_schema_available_registration_naming_options_item.py +16 -0
  1674. benchling_v3_sdk/types/dna_oligo_schema_containable_type.py +5 -0
  1675. benchling_v3_sdk/types/dna_oligo_schema_icon_id.py +7 -0
  1676. benchling_v3_sdk/types/dna_oligo_schema_paginated_list.py +25 -0
  1677. benchling_v3_sdk/types/dna_oligo_schema_ref.py +24 -0
  1678. benchling_v3_sdk/types/dna_oligo_updated_webhook_envelope_v3.py +25 -0
  1679. benchling_v3_sdk/types/dna_oligo_updated_webhook_v3.py +69 -0
  1680. benchling_v3_sdk/types/dna_oligo_updated_webhook_v3type.py +5 -0
  1681. benchling_v3_sdk/types/dna_pair_configuration_input.py +26 -0
  1682. benchling_v3_sdk/types/dna_pair_configuration_input_system_category_id.py +5 -0
  1683. benchling_v3_sdk/types/dna_part.py +69 -0
  1684. benchling_v3_sdk/types/dna_part_link_field_definition.py +68 -0
  1685. benchling_v3_sdk/types/dna_part_link_field_definition_derivation_type.py +5 -0
  1686. benchling_v3_sdk/types/dna_part_paginated_list.py +25 -0
  1687. benchling_v3_sdk/types/dna_part_strand.py +5 -0
  1688. benchling_v3_sdk/types/dna_sequence.py +175 -0
  1689. benchling_v3_sdk/types/dna_sequence_created_webhook_envelope_v3.py +25 -0
  1690. benchling_v3_sdk/types/dna_sequence_created_webhook_v3.py +64 -0
  1691. benchling_v3_sdk/types/dna_sequence_created_webhook_v3type.py +5 -0
  1692. benchling_v3_sdk/types/dna_sequence_link_field_definition.py +74 -0
  1693. benchling_v3_sdk/types/dna_sequence_link_field_definition_derivation_type.py +7 -0
  1694. benchling_v3_sdk/types/dna_sequence_paginated_list.py +25 -0
  1695. benchling_v3_sdk/types/dna_sequence_ref.py +24 -0
  1696. benchling_v3_sdk/types/dna_sequence_schema.py +107 -0
  1697. benchling_v3_sdk/types/dna_sequence_schema_available_registration_naming_options_item.py +16 -0
  1698. benchling_v3_sdk/types/dna_sequence_schema_containable_type.py +5 -0
  1699. benchling_v3_sdk/types/dna_sequence_schema_icon_id.py +8 -0
  1700. benchling_v3_sdk/types/dna_sequence_schema_paginated_list.py +25 -0
  1701. benchling_v3_sdk/types/dna_sequence_schema_ref.py +24 -0
  1702. benchling_v3_sdk/types/dna_sequence_updated_webhook_envelope_v3.py +25 -0
  1703. benchling_v3_sdk/types/dna_sequence_updated_webhook_v3.py +69 -0
  1704. benchling_v3_sdk/types/dna_sequence_updated_webhook_v3type.py +5 -0
  1705. benchling_v3_sdk/types/dna_sub_element_configuration_input.py +26 -0
  1706. benchling_v3_sdk/types/dna_sub_element_configuration_input_system_category_id.py +5 -0
  1707. benchling_v3_sdk/types/document_content_input.py +154 -0
  1708. benchling_v3_sdk/types/document_content_input_content_type.py +18 -0
  1709. benchling_v3_sdk/types/document_content_input_header_type.py +5 -0
  1710. benchling_v3_sdk/types/document_content_input_list_type.py +7 -0
  1711. benchling_v3_sdk/types/document_embeddable.py +16 -0
  1712. benchling_v3_sdk/types/document_like_ref.py +24 -0
  1713. benchling_v3_sdk/types/document_like_version_metadata.py +47 -0
  1714. benchling_v3_sdk/types/document_part.py +76 -0
  1715. benchling_v3_sdk/types/document_part_content.py +39 -0
  1716. benchling_v3_sdk/types/document_part_paginated_list.py +25 -0
  1717. benchling_v3_sdk/types/domain_linked_schema.py +39 -0
  1718. benchling_v3_sdk/types/domain_linked_schema_domain_type.py +30 -0
  1719. benchling_v3_sdk/types/domain_linked_schema_input.py +36 -0
  1720. benchling_v3_sdk/types/dropdown.py +57 -0
  1721. benchling_v3_sdk/types/dropdown_app_config_spec.py +32 -0
  1722. benchling_v3_sdk/types/dropdown_link_field_definition.py +62 -0
  1723. benchling_v3_sdk/types/dropdown_link_field_definition_derivation_type.py +5 -0
  1724. benchling_v3_sdk/types/dropdown_link_field_definition_paginated_list.py +25 -0
  1725. benchling_v3_sdk/types/dropdown_multi_value_ui_block.py +36 -0
  1726. benchling_v3_sdk/types/dropdown_multi_value_ui_block_input.py +29 -0
  1727. benchling_v3_sdk/types/dropdown_multi_value_ui_block_input_type.py +5 -0
  1728. benchling_v3_sdk/types/dropdown_option.py +37 -0
  1729. benchling_v3_sdk/types/dropdown_option_paginated_list.py +25 -0
  1730. benchling_v3_sdk/types/dropdown_option_unpaginated_list.py +20 -0
  1731. benchling_v3_sdk/types/dropdown_paginated_list.py +25 -0
  1732. benchling_v3_sdk/types/dropdown_ref.py +24 -0
  1733. benchling_v3_sdk/types/dropdown_ui_block.py +36 -0
  1734. benchling_v3_sdk/types/dropdown_ui_block_input.py +29 -0
  1735. benchling_v3_sdk/types/dropdown_ui_block_input_type.py +5 -0
  1736. benchling_v3_sdk/types/duplicate_transform.py +42 -0
  1737. benchling_v3_sdk/types/duplicate_transform_type.py +23 -0
  1738. benchling_v3_sdk/types/duplicate_transformation_properties.py +45 -0
  1739. benchling_v3_sdk/types/editing_target_input.py +5 -0
  1740. benchling_v3_sdk/types/entity_name_template.py +34 -0
  1741. benchling_v3_sdk/types/entity_name_template_input.py +29 -0
  1742. benchling_v3_sdk/types/entity_name_template_part.py +35 -0
  1743. benchling_v3_sdk/types/entity_name_template_part_configuration.py +15 -0
  1744. benchling_v3_sdk/types/entity_name_template_part_input.py +22 -0
  1745. benchling_v3_sdk/types/entity_name_template_part_input_configuration.py +15 -0
  1746. benchling_v3_sdk/types/entity_name_template_part_input_type.py +22 -0
  1747. benchling_v3_sdk/types/entity_name_template_part_type.py +24 -0
  1748. benchling_v3_sdk/types/entity_ref.py +24 -0
  1749. benchling_v3_sdk/types/entity_schema.py +95 -0
  1750. benchling_v3_sdk/types/entity_schema_app_config_spec.py +43 -0
  1751. benchling_v3_sdk/types/entity_schema_app_config_spec_subtype.py +10 -0
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  1753. benchling_v3_sdk/types/entity_schema_app_config_value_subtype.py +10 -0
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  2020. benchling_v3_sdk/types/nucleotide_annotation_input_strand.py +5 -0
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  2022. benchling_v3_sdk/types/nucleotide_annotation_strand.py +5 -0
  2023. benchling_v3_sdk/types/nucleotide_monomer.py +182 -0
  2024. benchling_v3_sdk/types/nucleotide_monomer_monomer_type.py +5 -0
  2025. benchling_v3_sdk/types/nucleotide_monomer_natural_analog.py +7 -0
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  2027. benchling_v3_sdk/types/nucleotide_monomer_polymer_type.py +5 -0
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  2029. benchling_v3_sdk/types/nucleotide_monomer_visual_symbol.py +34 -0
  2030. benchling_v3_sdk/types/nucleotide_part_input.py +44 -0
  2031. benchling_v3_sdk/types/nucleotide_part_input_strand.py +5 -0
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  2033. benchling_v3_sdk/types/nucleotide_simple_polymer.py +60 -0
  2034. benchling_v3_sdk/types/nucleotide_simple_polymer_nucleotide_type.py +5 -0
  2035. benchling_v3_sdk/types/null_filter_transformation_properties.py +38 -0
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  2811. benchling_v3_sdk/types/worklistable.py +41 -0
  2812. benchling_v3_sdk/types/worklistable_unpaginated_list.py +20 -0
  2813. benchling_v3_sdk/types/worksheet.py +61 -0
  2814. benchling_v3_sdk/types/worksheet_paginated_list.py +25 -0
  2815. benchling_v3_sdk/unit/__init__.py +38 -0
  2816. benchling_v3_sdk/unit/client.py +996 -0
  2817. benchling_v3_sdk/unit/raw_client.py +2050 -0
  2818. benchling_v3_sdk/unit/types/__init__.py +40 -0
  2819. benchling_v3_sdk/unit/types/batch_create_unit_response.py +20 -0
  2820. benchling_v3_sdk/unit/types/batch_update_unit_response.py +20 -0
  2821. benchling_v3_sdk/unit/types/list_unit_request_sort.py +7 -0
  2822. benchling_v3_sdk/unit_type/__init__.py +38 -0
  2823. benchling_v3_sdk/unit_type/client.py +1140 -0
  2824. benchling_v3_sdk/unit_type/raw_client.py +2266 -0
  2825. benchling_v3_sdk/unit_type/types/__init__.py +40 -0
  2826. benchling_v3_sdk/unit_type/types/batch_create_unit_type_response.py +20 -0
  2827. benchling_v3_sdk/unit_type/types/batch_update_unit_type_response.py +20 -0
  2828. benchling_v3_sdk/unit_type/types/list_unit_type_request_sort.py +7 -0
  2829. benchling_v3_sdk/user/__init__.py +39 -0
  2830. benchling_v3_sdk/user/client.py +891 -0
  2831. benchling_v3_sdk/user/raw_client.py +1951 -0
  2832. benchling_v3_sdk/user/types/__init__.py +42 -0
  2833. benchling_v3_sdk/user/types/batch_create_user_response.py +20 -0
  2834. benchling_v3_sdk/user/types/batch_update_user_response.py +20 -0
  2835. benchling_v3_sdk/user/types/list_user_request_sort.py +5 -0
  2836. benchling_v3_sdk/user/types/update_user_input_status.py +5 -0
  2837. benchling_v3_sdk/version.py +3 -0
  2838. benchling_v3_sdk/warehouse_credential/__init__.py +37 -0
  2839. benchling_v3_sdk/warehouse_credential/client.py +731 -0
  2840. benchling_v3_sdk/warehouse_credential/raw_client.py +1533 -0
  2841. benchling_v3_sdk/warehouse_credential/types/__init__.py +38 -0
  2842. benchling_v3_sdk/warehouse_credential/types/batch_update_warehouse_credential_response.py +20 -0
  2843. benchling_v3_sdk/warehouse_credential/types/list_warehouse_credential_request_sort.py +7 -0
  2844. benchling_v3_sdk/warehouse_custom_view/__init__.py +34 -0
  2845. benchling_v3_sdk/warehouse_custom_view/client.py +368 -0
  2846. benchling_v3_sdk/warehouse_custom_view/raw_client.py +641 -0
  2847. benchling_v3_sdk/warehouse_custom_view/types/__init__.py +36 -0
  2848. benchling_v3_sdk/warehouse_custom_view/types/list_warehouse_custom_view_request_sort.py +7 -0
  2849. benchling_v3_sdk/well_plate/__init__.py +38 -0
  2850. benchling_v3_sdk/well_plate/client.py +1126 -0
  2851. benchling_v3_sdk/well_plate/raw_client.py +2336 -0
  2852. benchling_v3_sdk/well_plate/types/__init__.py +40 -0
  2853. benchling_v3_sdk/well_plate/types/batch_create_well_plate_response.py +20 -0
  2854. benchling_v3_sdk/well_plate/types/batch_update_well_plate_response.py +20 -0
  2855. benchling_v3_sdk/well_plate/types/list_well_plate_request_sort.py +7 -0
  2856. benchling_v3_sdk/well_plate_position/__init__.py +34 -0
  2857. benchling_v3_sdk/well_plate_position/client.py +388 -0
  2858. benchling_v3_sdk/well_plate_position/raw_client.py +673 -0
  2859. benchling_v3_sdk/well_plate_position/types/__init__.py +34 -0
  2860. benchling_v3_sdk/well_plate_position/types/list_well_plate_position_request_sort.py +7 -0
  2861. benchling_v3_sdk/well_plate_schema/__init__.py +42 -0
  2862. benchling_v3_sdk/well_plate_schema/client.py +1207 -0
  2863. benchling_v3_sdk/well_plate_schema/raw_client.py +2382 -0
  2864. benchling_v3_sdk/well_plate_schema/types/__init__.py +40 -0
  2865. benchling_v3_sdk/well_plate_schema/types/batch_create_well_plate_schema_response.py +20 -0
  2866. benchling_v3_sdk/well_plate_schema/types/batch_update_well_plate_schema_response.py +20 -0
  2867. benchling_v3_sdk/well_plate_schema/types/list_well_plate_schema_request_sort.py +7 -0
  2868. benchling_v3_sdk/workflow_output/__init__.py +42 -0
  2869. benchling_v3_sdk/workflow_output/client.py +942 -0
  2870. benchling_v3_sdk/workflow_output/raw_client.py +2027 -0
  2871. benchling_v3_sdk/workflow_output/types/__init__.py +40 -0
  2872. benchling_v3_sdk/workflow_output/types/batch_create_workflow_output_response.py +20 -0
  2873. benchling_v3_sdk/workflow_output/types/batch_update_workflow_output_response.py +20 -0
  2874. benchling_v3_sdk/workflow_output/types/list_workflow_output_request_sort.py +7 -0
  2875. benchling_v3_sdk/workflow_output_schema/__init__.py +34 -0
  2876. benchling_v3_sdk/workflow_output_schema/client.py +467 -0
  2877. benchling_v3_sdk/workflow_output_schema/raw_client.py +870 -0
  2878. benchling_v3_sdk/workflow_output_schema/types/__init__.py +36 -0
  2879. benchling_v3_sdk/workflow_output_schema/types/list_workflow_output_schema_request_sort.py +7 -0
  2880. benchling_v3_sdk/workflow_task/__init__.py +55 -0
  2881. benchling_v3_sdk/workflow_task/client.py +1637 -0
  2882. benchling_v3_sdk/workflow_task/raw_client.py +3182 -0
  2883. benchling_v3_sdk/workflow_task/types/__init__.py +53 -0
  2884. benchling_v3_sdk/workflow_task/types/batch_create_workflow_task_response.py +20 -0
  2885. benchling_v3_sdk/workflow_task/types/batch_update_workflow_task_response.py +20 -0
  2886. benchling_v3_sdk/workflow_task/types/list_child_tasks_workflow_task_request_sort.py +7 -0
  2887. benchling_v3_sdk/workflow_task/types/list_workflow_outputs_workflow_task_request_sort.py +7 -0
  2888. benchling_v3_sdk/workflow_task/types/list_workflow_task_request_sort.py +7 -0
  2889. benchling_v3_sdk/workflow_task/types/update_workflow_task_input_status.py +21 -0
  2890. benchling_v3_sdk/workflow_task_group/__init__.py +55 -0
  2891. benchling_v3_sdk/workflow_task_group/client.py +1903 -0
  2892. benchling_v3_sdk/workflow_task_group/raw_client.py +3617 -0
  2893. benchling_v3_sdk/workflow_task_group/types/__init__.py +55 -0
  2894. benchling_v3_sdk/workflow_task_group/types/batch_create_workflow_task_group_response.py +20 -0
  2895. benchling_v3_sdk/workflow_task_group/types/batch_update_workflow_task_group_response.py +20 -0
  2896. benchling_v3_sdk/workflow_task_group/types/list_child_workflow_task_groups_workflow_task_group_request_sort.py +7 -0
  2897. benchling_v3_sdk/workflow_task_group/types/list_workflow_outputs_workflow_task_group_request_sort.py +7 -0
  2898. benchling_v3_sdk/workflow_task_group/types/list_workflow_task_group_request_sort.py +7 -0
  2899. benchling_v3_sdk/workflow_task_group/types/list_workflow_tasks_workflow_task_group_request_sort.py +7 -0
  2900. benchling_v3_sdk/workflow_task_schema/__init__.py +64 -0
  2901. benchling_v3_sdk/workflow_task_schema/client.py +1676 -0
  2902. benchling_v3_sdk/workflow_task_schema/raw_client.py +3336 -0
  2903. benchling_v3_sdk/workflow_task_schema/types/__init__.py +74 -0
  2904. benchling_v3_sdk/workflow_task_schema/types/batch_create_workflow_task_schema_response.py +20 -0
  2905. benchling_v3_sdk/workflow_task_schema/types/batch_update_workflow_task_schema_response.py +20 -0
  2906. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_field_definitions_workflow_task_schema_response.py +25 -0
  2907. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_field_definitions_workflow_task_schema_response_status.py +7 -0
  2908. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_output_field_definitions_workflow_task_schema_response.py +25 -0
  2909. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_output_field_definitions_workflow_task_schema_response_status.py +7 -0
  2910. benchling_v3_sdk/workflow_task_schema/types/list_workflow_task_schema_request_sort.py +7 -0
  2911. benchling_v3_sdk/workflow_task_schema/types/workflow_task_schema_set_field_definitions_input_field_definitions_item.py +123 -0
  2912. benchling_v3_sdk/workflow_task_schema/types/workflow_task_schema_set_output_field_definitions_input_field_definitions_item.py +123 -0
  2913. benchling_v3_sdk/worklist/__init__.py +52 -0
  2914. benchling_v3_sdk/worklist/client.py +1176 -0
  2915. benchling_v3_sdk/worklist/raw_client.py +2594 -0
  2916. benchling_v3_sdk/worklist/types/__init__.py +50 -0
  2917. benchling_v3_sdk/worklist/types/batch_create_worklist_response.py +20 -0
  2918. benchling_v3_sdk/worklist/types/batch_delete_worklist_response.py +20 -0
  2919. benchling_v3_sdk/worklist/types/batch_delete_worklist_response_items_item.py +19 -0
  2920. benchling_v3_sdk/worklist/types/batch_update_worklist_response.py +20 -0
  2921. benchling_v3_sdk/worklist/types/list_worklist_request_sort.py +7 -0
  2922. benchling_v3_sdk/worksheet/__init__.py +34 -0
  2923. benchling_v3_sdk/worksheet/client.py +572 -0
  2924. benchling_v3_sdk/worksheet/raw_client.py +1115 -0
  2925. benchling_v3_sdk/worksheet/types/__init__.py +34 -0
  2926. benchling_v3_sdk/worksheet/types/list_worksheet_request_sort.py +7 -0
  2927. benchling_v3_sdk_python-5.0.0.dist-info/LICENSE +201 -0
  2928. benchling_v3_sdk_python-5.0.0.dist-info/METADATA +286 -0
  2929. benchling_v3_sdk_python-5.0.0.dist-info/RECORD +2930 -0
  2930. benchling_v3_sdk_python-5.0.0.dist-info/WHEEL +4 -0
@@ -0,0 +1,2857 @@
1
+ # This file was auto-generated by Fern from our API Definition.
2
+
3
+ import typing
4
+ from json.decoder import JSONDecodeError
5
+
6
+ from ..core.api_error import ApiError
7
+ from ..core.client_wrapper import AsyncClientWrapper, SyncClientWrapper
8
+ from ..core.http_response import AsyncHttpResponse, HttpResponse
9
+ from ..core.jsonable_encoder import encode_path_param
10
+ from ..core.pagination import AsyncPager, SyncPager
11
+ from ..core.parse_error import ParsingError
12
+ from ..core.pydantic_utilities import parse_obj_as
13
+ from ..core.request_options import RequestOptions
14
+ from ..core.serialization import convert_and_respect_annotation_metadata
15
+ from ..errors.bad_request_error import BadRequestError
16
+ from ..errors.forbidden_error import ForbiddenError
17
+ from ..errors.internal_server_error import InternalServerError
18
+ from ..errors.not_found_error import NotFoundError
19
+ from ..errors.too_many_requests_error import TooManyRequestsError
20
+ from ..types.aa_annotation import AaAnnotation
21
+ from ..types.aa_annotation_input import AaAnnotationInput
22
+ from ..types.aa_annotation_input_update import AaAnnotationInputUpdate
23
+ from ..types.aa_annotation_paginated_list import AaAnnotationPaginatedList
24
+ from ..types.aa_sequence import AaSequence
25
+ from ..types.aa_sequence_paginated_list import AaSequencePaginatedList
26
+ from ..types.async_task_link import AsyncTaskLink
27
+ from ..types.create_aa_sequence_input import CreateAaSequenceInput
28
+ from ..types.create_aa_sequence_input_naming_strategy import CreateAaSequenceInputNamingStrategy
29
+ from ..types.field_value_input import FieldValueInput
30
+ from ..types.general_error import GeneralError
31
+ from ..types.internal_server_error_body import InternalServerErrorBody
32
+ from ..types.principal_unpaginated_list import PrincipalUnpaginatedList
33
+ from ..types.update_aa_sequence_input_with_path_params import UpdateAaSequenceInputWithPathParams
34
+ from .types.batch_create_aa_sequence_response import BatchCreateAaSequenceResponse
35
+ from .types.batch_update_aa_sequence_response import BatchUpdateAaSequenceResponse
36
+ from .types.list_aa_sequence_request_sort import ListAaSequenceRequestSort
37
+ from .types.update_aa_sequence_input_naming_strategy import UpdateAaSequenceInputNamingStrategy
38
+ from pydantic import ValidationError
39
+
40
+ # this is used as the default value for optional parameters
41
+ OMIT = typing.cast(typing.Any, ...)
42
+
43
+
44
+ class RawAaSequenceClient:
45
+ def __init__(self, *, client_wrapper: SyncClientWrapper):
46
+ self._client_wrapper = client_wrapper
47
+
48
+ def create(
49
+ self,
50
+ *,
51
+ amino_acids: str,
52
+ folder_id: str,
53
+ name: str,
54
+ aliases: typing.Optional[typing.Sequence[str]] = OMIT,
55
+ annotations: typing.Optional[typing.Sequence[AaAnnotationInput]] = OMIT,
56
+ author_ids: typing.Optional[typing.Sequence[str]] = OMIT,
57
+ custom_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
58
+ entity_registry_id: typing.Optional[str] = OMIT,
59
+ naming_strategy: typing.Optional[CreateAaSequenceInputNamingStrategy] = OMIT,
60
+ registry_id: typing.Optional[str] = OMIT,
61
+ schema_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
62
+ schema_id: typing.Optional[str] = OMIT,
63
+ request_options: typing.Optional[RequestOptions] = None,
64
+ ) -> HttpResponse[AaSequence]:
65
+ """
66
+ Create a new AA sequence.
67
+
68
+ Parameters
69
+ ----------
70
+ amino_acids : str
71
+ Amino acids of the AA sequence. Letters A-Z only (case-insensitive). Invalid characters are rejected.
72
+
73
+ folder_id : str
74
+
75
+ name : str
76
+ Name of the item.
77
+
78
+ aliases : typing.Optional[typing.Sequence[str]]
79
+ Array of aliases
80
+
81
+ annotations : typing.Optional[typing.Sequence[AaAnnotationInput]]
82
+ Optional annotations to create on the new sequence. Each entry defines a region with 0-based `start` (inclusive) and `end` (exclusive) indices.
83
+
84
+ author_ids : typing.Optional[typing.Sequence[str]]
85
+
86
+ custom_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
87
+ Custom fields set on the AA sequence.
88
+
89
+ entity_registry_id : typing.Optional[str]
90
+ Registry ID to assign to the entity. If one is specified, the labeling_strategy must be unspecified.
91
+
92
+ naming_strategy : typing.Optional[CreateAaSequenceInputNamingStrategy]
93
+ Strategy to use for labeling the item in the registry. If one is specified, the entity_registry_id must be unspecified.
94
+
95
+ registry_id : typing.Optional[str]
96
+ A not null value means the entity should be registered. If not null, the value must match the registry of the item's schema.
97
+
98
+ schema_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
99
+
100
+ schema_id : typing.Optional[str]
101
+
102
+ request_options : typing.Optional[RequestOptions]
103
+ Request-specific configuration.
104
+
105
+ Returns
106
+ -------
107
+ HttpResponse[AaSequence]
108
+ Created
109
+ """
110
+ _response = self._client_wrapper.httpx_client.request(
111
+ "api/v3/aa-sequence",
112
+ method="POST",
113
+ json={
114
+ "aliases": aliases,
115
+ "aminoAcids": amino_acids,
116
+ "annotations": convert_and_respect_annotation_metadata(
117
+ object_=annotations, annotation=typing.Sequence[AaAnnotationInput], direction="write"
118
+ ),
119
+ "authorIds": author_ids,
120
+ "customFields": convert_and_respect_annotation_metadata(
121
+ object_=custom_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
122
+ ),
123
+ "entityRegistryId": entity_registry_id,
124
+ "folderId": folder_id,
125
+ "name": name,
126
+ "namingStrategy": naming_strategy,
127
+ "registryId": registry_id,
128
+ "schemaFields": convert_and_respect_annotation_metadata(
129
+ object_=schema_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
130
+ ),
131
+ "schemaId": schema_id,
132
+ },
133
+ request_options=request_options,
134
+ omit=OMIT,
135
+ )
136
+ try:
137
+ if 200 <= _response.status_code < 300:
138
+ _data = typing.cast(
139
+ AaSequence,
140
+ parse_obj_as(
141
+ type_=AaSequence, # type: ignore
142
+ object_=_response.json(),
143
+ ),
144
+ )
145
+ return HttpResponse(response=_response, data=_data)
146
+ if _response.status_code == 400:
147
+ raise BadRequestError(
148
+ headers=dict(_response.headers),
149
+ body=typing.cast(
150
+ typing.Any,
151
+ parse_obj_as(
152
+ type_=typing.Any, # type: ignore
153
+ object_=_response.json(),
154
+ ),
155
+ ),
156
+ )
157
+ if _response.status_code == 403:
158
+ raise ForbiddenError(
159
+ headers=dict(_response.headers),
160
+ body=typing.cast(
161
+ GeneralError,
162
+ parse_obj_as(
163
+ type_=GeneralError, # type: ignore
164
+ object_=_response.json(),
165
+ ),
166
+ ),
167
+ )
168
+ if _response.status_code == 404:
169
+ raise NotFoundError(
170
+ headers=dict(_response.headers),
171
+ body=typing.cast(
172
+ GeneralError,
173
+ parse_obj_as(
174
+ type_=GeneralError, # type: ignore
175
+ object_=_response.json(),
176
+ ),
177
+ ),
178
+ )
179
+ if _response.status_code == 429:
180
+ raise TooManyRequestsError(
181
+ headers=dict(_response.headers),
182
+ body=typing.cast(
183
+ GeneralError,
184
+ parse_obj_as(
185
+ type_=GeneralError, # type: ignore
186
+ object_=_response.json(),
187
+ ),
188
+ ),
189
+ )
190
+ if _response.status_code == 500:
191
+ raise InternalServerError(
192
+ headers=dict(_response.headers),
193
+ body=typing.cast(
194
+ InternalServerErrorBody,
195
+ parse_obj_as(
196
+ type_=InternalServerErrorBody, # type: ignore
197
+ object_=_response.json(),
198
+ ),
199
+ ),
200
+ )
201
+ _response_json = _response.json()
202
+ except JSONDecodeError:
203
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
204
+ except ValidationError as e:
205
+ raise ParsingError(
206
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
207
+ )
208
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
209
+
210
+ def list(
211
+ self,
212
+ *,
213
+ amino_acids_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
214
+ archive_reason_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
215
+ archived_any_of: typing.Optional[typing.Union[bool, typing.Sequence[bool]]] = None,
216
+ authors_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
217
+ created_at_gt: typing.Optional[str] = None,
218
+ created_at_gte: typing.Optional[str] = None,
219
+ created_at_lt: typing.Optional[str] = None,
220
+ created_at_lte: typing.Optional[str] = None,
221
+ creator_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
222
+ entity_registry_ids_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
223
+ fieldset_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
224
+ folder_eq: typing.Optional[str] = None,
225
+ id_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
226
+ mentioned_in_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
227
+ modified_at_gt: typing.Optional[str] = None,
228
+ modified_at_gte: typing.Optional[str] = None,
229
+ modified_at_lt: typing.Optional[str] = None,
230
+ modified_at_lte: typing.Optional[str] = None,
231
+ name_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
232
+ name_any_of_case_sensitive: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
233
+ next_token: typing.Optional[str] = None,
234
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
235
+ page_size: typing.Optional[int] = None,
236
+ project_eq: typing.Optional[str] = None,
237
+ registry_eq: typing.Optional[str] = None,
238
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
239
+ schema_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
240
+ schema_eq: typing.Optional[str] = None,
241
+ system_category_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
242
+ sort: typing.Optional[ListAaSequenceRequestSort] = None,
243
+ request_options: typing.Optional[RequestOptions] = None,
244
+ ) -> SyncPager[AaSequence, AaSequencePaginatedList]:
245
+ """
246
+ List AaSequence items.
247
+
248
+ Parameters
249
+ ----------
250
+ amino_acids_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
251
+ Restricts results to those whose sequence exactly matches any of the specified amino acid sequences (case-insensitive). Comma-separated list.
252
+
253
+ archive_reason_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
254
+ Restricts items to those with any of the specified archive reasons. Use "NOT_ARCHIVED" to filter for unarchived items. Use "ANY_ARCHIVED" to filter for archived items regardless of reason. Use "ANY_ARCHIVED_OR_NOT_ARCHIVED" to return items for both archived and unarchived. Comma-separated list.
255
+
256
+ archived_any_of : typing.Optional[typing.Union[bool, typing.Sequence[bool]]]
257
+ If true, returns archived items. If false, returns unarchived items. If both true and false, returns archived and unarchived items. Comma-separated list.
258
+
259
+ authors_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
260
+ Restricts results to those whose author matches any of the specified user or author IDs. Comma-separated list.
261
+
262
+ created_at_gt : typing.Optional[str]
263
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created after the specified time. e.g. > 2017-04-30.
264
+
265
+ created_at_gte : typing.Optional[str]
266
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or after the specified time. e.g. >= 2017-04-30.
267
+
268
+ created_at_lt : typing.Optional[str]
269
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created before the specified time. e.g. < 2017-04-30.
270
+
271
+ created_at_lte : typing.Optional[str]
272
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or before the specified time. e.g. <= 2017-04-30.
273
+
274
+ creator_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
275
+ Restricts results to those created by any of the specified user IDs. Comma-separated list.
276
+
277
+ entity_registry_ids_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
278
+ Restricts results to those that match any of the specified entity registry IDs. Comma-separated list.
279
+
280
+ fieldset_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
281
+ Restricts results to those whose schema implements any of the specified fieldset API IDs (custom schema interfaces). Comma-separated list.
282
+
283
+ folder_eq : typing.Optional[str]
284
+ ID of a folder. Restricts results to its direct children.
285
+
286
+ id_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
287
+ Restricts results to those matching any of the specified IDs. Comma-separated list.
288
+
289
+ mentioned_in_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
290
+ Restricts results to items mentioned in entries matching any of the specified entry IDs. Comma-separated list.
291
+
292
+ modified_at_gt : typing.Optional[str]
293
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified after the specified time. e.g. > 2017-04-30.
294
+
295
+ modified_at_gte : typing.Optional[str]
296
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or after the specified time. e.g. >= 2017-04-30.
297
+
298
+ modified_at_lt : typing.Optional[str]
299
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified before the specified time. e.g. < 2017-04-30.
300
+
301
+ modified_at_lte : typing.Optional[str]
302
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or before the specified time. e.g. <= 2017-04-30.
303
+
304
+ name_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
305
+ Restricts results to those that match any of the specified names. Case insensitive. Warning - this filter can be non-performant due to case insensitivity. Ensure only one name filter is used at a time. Comma-separated list.
306
+
307
+ name_any_of_case_sensitive : typing.Optional[typing.Union[str, typing.Sequence[str]]]
308
+ Restricts results to those that match any of the specified names. Case sensitive. Ensure only one name filter is used at a time. Comma-separated list.
309
+
310
+ next_token : typing.Optional[str]
311
+ Token for pagination
312
+
313
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
314
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
315
+
316
+ page_size : typing.Optional[int]
317
+ Number of results to return. Defaults to 50, maximum of 100.
318
+
319
+ project_eq : typing.Optional[str]
320
+ ID of a project. Restricts results to those in the project.
321
+
322
+ registry_eq : typing.Optional[str]
323
+ ID of a registry. Restricts results to those registered in this registry. Specifying "null" returns unregistered items.
324
+
325
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
326
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
327
+
328
+ schema_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
329
+ Restricts results to those that match any of the specified schema IDs. Use only one `schema` filter arg at a time. Comma-separated list.
330
+
331
+ schema_eq : typing.Optional[str]
332
+ Single schema ID. Restricts results to those that match the specified schema exactly. Use only one `schema` filter arg at a time.
333
+
334
+ system_category_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
335
+ Restricts results to those whose schema implements any of the specified system category API IDs (non-exclusive static schema interfaces). Comma-separated list.
336
+
337
+ sort : typing.Optional[ListAaSequenceRequestSort]
338
+ Method by which to order results. Valid sorts are: createdAt (created time, oldest first) and modifiedAt (modified time, oldest first). Use :asc or :desc to specify ascending or descending order. Default is modifiedAt:desc.
339
+
340
+ request_options : typing.Optional[RequestOptions]
341
+ Request-specific configuration.
342
+
343
+ Returns
344
+ -------
345
+ SyncPager[AaSequence, AaSequencePaginatedList]
346
+ OK
347
+ """
348
+ _response = self._client_wrapper.httpx_client.request(
349
+ "api/v3/aa-sequence/items",
350
+ method="GET",
351
+ params={
352
+ "aminoAcids.anyOf": ",".join(map(str, amino_acids_any_of))
353
+ if isinstance(amino_acids_any_of, (list, tuple, set))
354
+ else amino_acids_any_of,
355
+ "archiveReason.anyOf": ",".join(map(str, archive_reason_any_of))
356
+ if isinstance(archive_reason_any_of, (list, tuple, set))
357
+ else archive_reason_any_of,
358
+ "archived.anyOf": ",".join(map(str, archived_any_of))
359
+ if isinstance(archived_any_of, (list, tuple, set))
360
+ else archived_any_of,
361
+ "authors.anyOf": ",".join(map(str, authors_any_of))
362
+ if isinstance(authors_any_of, (list, tuple, set))
363
+ else authors_any_of,
364
+ "createdAt.gt": created_at_gt,
365
+ "createdAt.gte": created_at_gte,
366
+ "createdAt.lt": created_at_lt,
367
+ "createdAt.lte": created_at_lte,
368
+ "creator.anyOf": ",".join(map(str, creator_any_of))
369
+ if isinstance(creator_any_of, (list, tuple, set))
370
+ else creator_any_of,
371
+ "entityRegistryIds.anyOf": ",".join(map(str, entity_registry_ids_any_of))
372
+ if isinstance(entity_registry_ids_any_of, (list, tuple, set))
373
+ else entity_registry_ids_any_of,
374
+ "fieldset.anyOf": ",".join(map(str, fieldset_any_of))
375
+ if isinstance(fieldset_any_of, (list, tuple, set))
376
+ else fieldset_any_of,
377
+ "folder.eq": folder_eq,
378
+ "id.anyOf": ",".join(map(str, id_any_of)) if isinstance(id_any_of, (list, tuple, set)) else id_any_of,
379
+ "mentionedIn.anyOf": ",".join(map(str, mentioned_in_any_of))
380
+ if isinstance(mentioned_in_any_of, (list, tuple, set))
381
+ else mentioned_in_any_of,
382
+ "modifiedAt.gt": modified_at_gt,
383
+ "modifiedAt.gte": modified_at_gte,
384
+ "modifiedAt.lt": modified_at_lt,
385
+ "modifiedAt.lte": modified_at_lte,
386
+ "name.anyOf": ",".join(map(str, name_any_of))
387
+ if isinstance(name_any_of, (list, tuple, set))
388
+ else name_any_of,
389
+ "name.anyOf.caseSensitive": ",".join(map(str, name_any_of_case_sensitive))
390
+ if isinstance(name_any_of_case_sensitive, (list, tuple, set))
391
+ else name_any_of_case_sensitive,
392
+ "nextToken": next_token,
393
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
394
+ "pageSize": page_size,
395
+ "project.eq": project_eq,
396
+ "registry.eq": registry_eq,
397
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
398
+ "schema.anyOf": ",".join(map(str, schema_any_of))
399
+ if isinstance(schema_any_of, (list, tuple, set))
400
+ else schema_any_of,
401
+ "schema.eq": schema_eq,
402
+ "systemCategory.anyOf": ",".join(map(str, system_category_any_of))
403
+ if isinstance(system_category_any_of, (list, tuple, set))
404
+ else system_category_any_of,
405
+ "sort": sort,
406
+ },
407
+ request_options=request_options,
408
+ )
409
+ try:
410
+ if 200 <= _response.status_code < 300:
411
+ _parsed_response = typing.cast(
412
+ AaSequencePaginatedList,
413
+ parse_obj_as(
414
+ type_=AaSequencePaginatedList, # type: ignore
415
+ object_=_response.json(),
416
+ ),
417
+ )
418
+ _items = _parsed_response.items
419
+ _parsed_next = _parsed_response.next_token
420
+ _has_next = _parsed_next is not None and _parsed_next != ""
421
+ _get_next = lambda: self.list(
422
+ amino_acids_any_of=amino_acids_any_of,
423
+ archive_reason_any_of=archive_reason_any_of,
424
+ archived_any_of=archived_any_of,
425
+ authors_any_of=authors_any_of,
426
+ created_at_gt=created_at_gt,
427
+ created_at_gte=created_at_gte,
428
+ created_at_lt=created_at_lt,
429
+ created_at_lte=created_at_lte,
430
+ creator_any_of=creator_any_of,
431
+ entity_registry_ids_any_of=entity_registry_ids_any_of,
432
+ fieldset_any_of=fieldset_any_of,
433
+ folder_eq=folder_eq,
434
+ id_any_of=id_any_of,
435
+ mentioned_in_any_of=mentioned_in_any_of,
436
+ modified_at_gt=modified_at_gt,
437
+ modified_at_gte=modified_at_gte,
438
+ modified_at_lt=modified_at_lt,
439
+ modified_at_lte=modified_at_lte,
440
+ name_any_of=name_any_of,
441
+ name_any_of_case_sensitive=name_any_of_case_sensitive,
442
+ next_token=_parsed_next,
443
+ omit=omit,
444
+ page_size=page_size,
445
+ project_eq=project_eq,
446
+ registry_eq=registry_eq,
447
+ returning=returning,
448
+ schema_any_of=schema_any_of,
449
+ schema_eq=schema_eq,
450
+ system_category_any_of=system_category_any_of,
451
+ sort=sort,
452
+ request_options=request_options,
453
+ )
454
+ return SyncPager(has_next=_has_next, items=_items, get_next=_get_next, response=_parsed_response)
455
+ if _response.status_code == 400:
456
+ raise BadRequestError(
457
+ headers=dict(_response.headers),
458
+ body=typing.cast(
459
+ typing.Any,
460
+ parse_obj_as(
461
+ type_=typing.Any, # type: ignore
462
+ object_=_response.json(),
463
+ ),
464
+ ),
465
+ )
466
+ if _response.status_code == 403:
467
+ raise ForbiddenError(
468
+ headers=dict(_response.headers),
469
+ body=typing.cast(
470
+ GeneralError,
471
+ parse_obj_as(
472
+ type_=GeneralError, # type: ignore
473
+ object_=_response.json(),
474
+ ),
475
+ ),
476
+ )
477
+ if _response.status_code == 404:
478
+ raise NotFoundError(
479
+ headers=dict(_response.headers),
480
+ body=typing.cast(
481
+ GeneralError,
482
+ parse_obj_as(
483
+ type_=GeneralError, # type: ignore
484
+ object_=_response.json(),
485
+ ),
486
+ ),
487
+ )
488
+ if _response.status_code == 429:
489
+ raise TooManyRequestsError(
490
+ headers=dict(_response.headers),
491
+ body=typing.cast(
492
+ GeneralError,
493
+ parse_obj_as(
494
+ type_=GeneralError, # type: ignore
495
+ object_=_response.json(),
496
+ ),
497
+ ),
498
+ )
499
+ if _response.status_code == 500:
500
+ raise InternalServerError(
501
+ headers=dict(_response.headers),
502
+ body=typing.cast(
503
+ InternalServerErrorBody,
504
+ parse_obj_as(
505
+ type_=InternalServerErrorBody, # type: ignore
506
+ object_=_response.json(),
507
+ ),
508
+ ),
509
+ )
510
+ _response_json = _response.json()
511
+ except JSONDecodeError:
512
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
513
+ except ValidationError as e:
514
+ raise ParsingError(
515
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
516
+ )
517
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
518
+
519
+ def get(
520
+ self,
521
+ aa_sequence_id: str,
522
+ *,
523
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
524
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
525
+ request_options: typing.Optional[RequestOptions] = None,
526
+ ) -> HttpResponse[AaSequence]:
527
+ """
528
+ Get a single AaSequence by ID.
529
+
530
+ Parameters
531
+ ----------
532
+ aa_sequence_id : str
533
+ ID of the AaSequence.
534
+
535
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
536
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
537
+
538
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
539
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
540
+
541
+ request_options : typing.Optional[RequestOptions]
542
+ Request-specific configuration.
543
+
544
+ Returns
545
+ -------
546
+ HttpResponse[AaSequence]
547
+ OK
548
+ """
549
+ _response = self._client_wrapper.httpx_client.request(
550
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}",
551
+ method="GET",
552
+ params={
553
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
554
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
555
+ },
556
+ request_options=request_options,
557
+ )
558
+ try:
559
+ if 200 <= _response.status_code < 300:
560
+ _data = typing.cast(
561
+ AaSequence,
562
+ parse_obj_as(
563
+ type_=AaSequence, # type: ignore
564
+ object_=_response.json(),
565
+ ),
566
+ )
567
+ return HttpResponse(response=_response, data=_data)
568
+ if _response.status_code == 400:
569
+ raise BadRequestError(
570
+ headers=dict(_response.headers),
571
+ body=typing.cast(
572
+ typing.Any,
573
+ parse_obj_as(
574
+ type_=typing.Any, # type: ignore
575
+ object_=_response.json(),
576
+ ),
577
+ ),
578
+ )
579
+ if _response.status_code == 403:
580
+ raise ForbiddenError(
581
+ headers=dict(_response.headers),
582
+ body=typing.cast(
583
+ GeneralError,
584
+ parse_obj_as(
585
+ type_=GeneralError, # type: ignore
586
+ object_=_response.json(),
587
+ ),
588
+ ),
589
+ )
590
+ if _response.status_code == 404:
591
+ raise NotFoundError(
592
+ headers=dict(_response.headers),
593
+ body=typing.cast(
594
+ GeneralError,
595
+ parse_obj_as(
596
+ type_=GeneralError, # type: ignore
597
+ object_=_response.json(),
598
+ ),
599
+ ),
600
+ )
601
+ if _response.status_code == 429:
602
+ raise TooManyRequestsError(
603
+ headers=dict(_response.headers),
604
+ body=typing.cast(
605
+ GeneralError,
606
+ parse_obj_as(
607
+ type_=GeneralError, # type: ignore
608
+ object_=_response.json(),
609
+ ),
610
+ ),
611
+ )
612
+ if _response.status_code == 500:
613
+ raise InternalServerError(
614
+ headers=dict(_response.headers),
615
+ body=typing.cast(
616
+ InternalServerErrorBody,
617
+ parse_obj_as(
618
+ type_=InternalServerErrorBody, # type: ignore
619
+ object_=_response.json(),
620
+ ),
621
+ ),
622
+ )
623
+ _response_json = _response.json()
624
+ except JSONDecodeError:
625
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
626
+ except ValidationError as e:
627
+ raise ParsingError(
628
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
629
+ )
630
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
631
+
632
+ def update(
633
+ self,
634
+ aa_sequence_id: str,
635
+ *,
636
+ aliases: typing.Optional[typing.Sequence[str]] = OMIT,
637
+ amino_acids: typing.Optional[str] = OMIT,
638
+ annotations: typing.Optional[typing.Sequence[AaAnnotationInputUpdate]] = OMIT,
639
+ archive_reason: typing.Optional[str] = OMIT,
640
+ archived: typing.Optional[bool] = OMIT,
641
+ author_ids: typing.Optional[typing.Sequence[str]] = OMIT,
642
+ custom_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
643
+ entity_registry_id: typing.Optional[str] = OMIT,
644
+ folder_id: typing.Optional[str] = OMIT,
645
+ name: typing.Optional[str] = OMIT,
646
+ naming_strategy: typing.Optional[UpdateAaSequenceInputNamingStrategy] = OMIT,
647
+ registry_id: typing.Optional[str] = OMIT,
648
+ schema_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
649
+ schema_id: typing.Optional[str] = OMIT,
650
+ request_options: typing.Optional[RequestOptions] = None,
651
+ ) -> HttpResponse[AaSequence]:
652
+ """
653
+ Update an AA sequence.
654
+
655
+ Parameters
656
+ ----------
657
+ aa_sequence_id : str
658
+ ID of the AaSequence.
659
+
660
+ aliases : typing.Optional[typing.Sequence[str]]
661
+ Array of aliases
662
+
663
+ amino_acids : typing.Optional[str]
664
+ Updates the amino acids of the AA sequence when provided. Letters A-Z only (case-insensitive). Invalid characters are rejected. The request must also include an `annotations` property (use `annotations: []` to clear annotations); that value replaces the sequence's full annotation set.
665
+
666
+ annotations : typing.Optional[typing.Sequence[AaAnnotationInputUpdate]]
667
+ Replaces the sequence's full annotation set when provided. Include `annotationId` on an entry to update an existing annotation; omit it to create a new one.
668
+
669
+ archive_reason : typing.Optional[str]
670
+
671
+ archived : typing.Optional[bool]
672
+
673
+ author_ids : typing.Optional[typing.Sequence[str]]
674
+
675
+ custom_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
676
+ Custom fields set on the AA sequence.
677
+
678
+ entity_registry_id : typing.Optional[str]
679
+ Registry ID to assign to the entity. When registering, specifying this value sets the registry ID of the entity. When already registered, specifying this value updates the entity's registry ID. If set, naming_strategy must be unspecified.
680
+
681
+ folder_id : typing.Optional[str]
682
+
683
+ name : typing.Optional[str]
684
+ Name of the item.
685
+
686
+ naming_strategy : typing.Optional[UpdateAaSequenceInputNamingStrategy]
687
+ Strategy to use for labeling the item in the registry if registering. If one is specified, the entity_registry_id must be unspecified.
688
+
689
+ registry_id : typing.Optional[str]
690
+ A not null value means the entity should be registered. A null value means it should be unregistered. If not null, the value must match the registry of the item's schema.
691
+
692
+ schema_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
693
+
694
+ schema_id : typing.Optional[str]
695
+
696
+ request_options : typing.Optional[RequestOptions]
697
+ Request-specific configuration.
698
+
699
+ Returns
700
+ -------
701
+ HttpResponse[AaSequence]
702
+ OK
703
+ """
704
+ _response = self._client_wrapper.httpx_client.request(
705
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}",
706
+ method="PATCH",
707
+ json={
708
+ "aliases": aliases,
709
+ "aminoAcids": amino_acids,
710
+ "annotations": convert_and_respect_annotation_metadata(
711
+ object_=annotations, annotation=typing.Sequence[AaAnnotationInputUpdate], direction="write"
712
+ ),
713
+ "archiveReason": archive_reason,
714
+ "archived": archived,
715
+ "authorIds": author_ids,
716
+ "customFields": convert_and_respect_annotation_metadata(
717
+ object_=custom_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
718
+ ),
719
+ "entityRegistryId": entity_registry_id,
720
+ "folderId": folder_id,
721
+ "name": name,
722
+ "namingStrategy": naming_strategy,
723
+ "registryId": registry_id,
724
+ "schemaFields": convert_and_respect_annotation_metadata(
725
+ object_=schema_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
726
+ ),
727
+ "schemaId": schema_id,
728
+ },
729
+ headers={
730
+ "content-type": "application/json",
731
+ },
732
+ request_options=request_options,
733
+ omit=OMIT,
734
+ )
735
+ try:
736
+ if 200 <= _response.status_code < 300:
737
+ _data = typing.cast(
738
+ AaSequence,
739
+ parse_obj_as(
740
+ type_=AaSequence, # type: ignore
741
+ object_=_response.json(),
742
+ ),
743
+ )
744
+ return HttpResponse(response=_response, data=_data)
745
+ if _response.status_code == 400:
746
+ raise BadRequestError(
747
+ headers=dict(_response.headers),
748
+ body=typing.cast(
749
+ typing.Any,
750
+ parse_obj_as(
751
+ type_=typing.Any, # type: ignore
752
+ object_=_response.json(),
753
+ ),
754
+ ),
755
+ )
756
+ if _response.status_code == 403:
757
+ raise ForbiddenError(
758
+ headers=dict(_response.headers),
759
+ body=typing.cast(
760
+ GeneralError,
761
+ parse_obj_as(
762
+ type_=GeneralError, # type: ignore
763
+ object_=_response.json(),
764
+ ),
765
+ ),
766
+ )
767
+ if _response.status_code == 404:
768
+ raise NotFoundError(
769
+ headers=dict(_response.headers),
770
+ body=typing.cast(
771
+ GeneralError,
772
+ parse_obj_as(
773
+ type_=GeneralError, # type: ignore
774
+ object_=_response.json(),
775
+ ),
776
+ ),
777
+ )
778
+ if _response.status_code == 429:
779
+ raise TooManyRequestsError(
780
+ headers=dict(_response.headers),
781
+ body=typing.cast(
782
+ GeneralError,
783
+ parse_obj_as(
784
+ type_=GeneralError, # type: ignore
785
+ object_=_response.json(),
786
+ ),
787
+ ),
788
+ )
789
+ if _response.status_code == 500:
790
+ raise InternalServerError(
791
+ headers=dict(_response.headers),
792
+ body=typing.cast(
793
+ InternalServerErrorBody,
794
+ parse_obj_as(
795
+ type_=InternalServerErrorBody, # type: ignore
796
+ object_=_response.json(),
797
+ ),
798
+ ),
799
+ )
800
+ _response_json = _response.json()
801
+ except JSONDecodeError:
802
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
803
+ except ValidationError as e:
804
+ raise ParsingError(
805
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
806
+ )
807
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
808
+
809
+ def list_annotations(
810
+ self,
811
+ aa_sequence_id: str,
812
+ *,
813
+ next_token: typing.Optional[str] = None,
814
+ page_size: typing.Optional[int] = None,
815
+ request_options: typing.Optional[RequestOptions] = None,
816
+ ) -> SyncPager[AaAnnotation, AaAnnotationPaginatedList]:
817
+ """
818
+ List AaAnnotation items.
819
+
820
+ Parameters
821
+ ----------
822
+ aa_sequence_id : str
823
+ ID of the AaSequence.
824
+
825
+ next_token : typing.Optional[str]
826
+ Token for pagination
827
+
828
+ page_size : typing.Optional[int]
829
+ Number of results to return. Defaults to 50, maximum of 100.
830
+
831
+ request_options : typing.Optional[RequestOptions]
832
+ Request-specific configuration.
833
+
834
+ Returns
835
+ -------
836
+ SyncPager[AaAnnotation, AaAnnotationPaginatedList]
837
+ OK
838
+ """
839
+ _response = self._client_wrapper.httpx_client.request(
840
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}/annotations/items",
841
+ method="GET",
842
+ params={
843
+ "nextToken": next_token,
844
+ "pageSize": page_size,
845
+ },
846
+ request_options=request_options,
847
+ )
848
+ try:
849
+ if 200 <= _response.status_code < 300:
850
+ _parsed_response = typing.cast(
851
+ AaAnnotationPaginatedList,
852
+ parse_obj_as(
853
+ type_=AaAnnotationPaginatedList, # type: ignore
854
+ object_=_response.json(),
855
+ ),
856
+ )
857
+ _items = _parsed_response.items
858
+ _parsed_next = _parsed_response.next_token
859
+ _has_next = _parsed_next is not None and _parsed_next != ""
860
+ _get_next = lambda: self.list_annotations(
861
+ aa_sequence_id,
862
+ next_token=_parsed_next,
863
+ page_size=page_size,
864
+ request_options=request_options,
865
+ )
866
+ return SyncPager(has_next=_has_next, items=_items, get_next=_get_next, response=_parsed_response)
867
+ if _response.status_code == 400:
868
+ raise BadRequestError(
869
+ headers=dict(_response.headers),
870
+ body=typing.cast(
871
+ typing.Any,
872
+ parse_obj_as(
873
+ type_=typing.Any, # type: ignore
874
+ object_=_response.json(),
875
+ ),
876
+ ),
877
+ )
878
+ if _response.status_code == 403:
879
+ raise ForbiddenError(
880
+ headers=dict(_response.headers),
881
+ body=typing.cast(
882
+ GeneralError,
883
+ parse_obj_as(
884
+ type_=GeneralError, # type: ignore
885
+ object_=_response.json(),
886
+ ),
887
+ ),
888
+ )
889
+ if _response.status_code == 404:
890
+ raise NotFoundError(
891
+ headers=dict(_response.headers),
892
+ body=typing.cast(
893
+ GeneralError,
894
+ parse_obj_as(
895
+ type_=GeneralError, # type: ignore
896
+ object_=_response.json(),
897
+ ),
898
+ ),
899
+ )
900
+ if _response.status_code == 429:
901
+ raise TooManyRequestsError(
902
+ headers=dict(_response.headers),
903
+ body=typing.cast(
904
+ GeneralError,
905
+ parse_obj_as(
906
+ type_=GeneralError, # type: ignore
907
+ object_=_response.json(),
908
+ ),
909
+ ),
910
+ )
911
+ if _response.status_code == 500:
912
+ raise InternalServerError(
913
+ headers=dict(_response.headers),
914
+ body=typing.cast(
915
+ InternalServerErrorBody,
916
+ parse_obj_as(
917
+ type_=InternalServerErrorBody, # type: ignore
918
+ object_=_response.json(),
919
+ ),
920
+ ),
921
+ )
922
+ _response_json = _response.json()
923
+ except JSONDecodeError:
924
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
925
+ except ValidationError as e:
926
+ raise ParsingError(
927
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
928
+ )
929
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
930
+
931
+ def list_authors(
932
+ self, aa_sequence_id: str, *, request_options: typing.Optional[RequestOptions] = None
933
+ ) -> HttpResponse[PrincipalUnpaginatedList]:
934
+ """
935
+ List Principal items.
936
+
937
+ Parameters
938
+ ----------
939
+ aa_sequence_id : str
940
+ ID of the AaSequence.
941
+
942
+ request_options : typing.Optional[RequestOptions]
943
+ Request-specific configuration.
944
+
945
+ Returns
946
+ -------
947
+ HttpResponse[PrincipalUnpaginatedList]
948
+ OK
949
+ """
950
+ _response = self._client_wrapper.httpx_client.request(
951
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}/authors/items",
952
+ method="GET",
953
+ request_options=request_options,
954
+ )
955
+ try:
956
+ if 200 <= _response.status_code < 300:
957
+ _data = typing.cast(
958
+ PrincipalUnpaginatedList,
959
+ parse_obj_as(
960
+ type_=PrincipalUnpaginatedList, # type: ignore
961
+ object_=_response.json(),
962
+ ),
963
+ )
964
+ return HttpResponse(response=_response, data=_data)
965
+ if _response.status_code == 400:
966
+ raise BadRequestError(
967
+ headers=dict(_response.headers),
968
+ body=typing.cast(
969
+ typing.Any,
970
+ parse_obj_as(
971
+ type_=typing.Any, # type: ignore
972
+ object_=_response.json(),
973
+ ),
974
+ ),
975
+ )
976
+ if _response.status_code == 403:
977
+ raise ForbiddenError(
978
+ headers=dict(_response.headers),
979
+ body=typing.cast(
980
+ GeneralError,
981
+ parse_obj_as(
982
+ type_=GeneralError, # type: ignore
983
+ object_=_response.json(),
984
+ ),
985
+ ),
986
+ )
987
+ if _response.status_code == 404:
988
+ raise NotFoundError(
989
+ headers=dict(_response.headers),
990
+ body=typing.cast(
991
+ GeneralError,
992
+ parse_obj_as(
993
+ type_=GeneralError, # type: ignore
994
+ object_=_response.json(),
995
+ ),
996
+ ),
997
+ )
998
+ if _response.status_code == 429:
999
+ raise TooManyRequestsError(
1000
+ headers=dict(_response.headers),
1001
+ body=typing.cast(
1002
+ GeneralError,
1003
+ parse_obj_as(
1004
+ type_=GeneralError, # type: ignore
1005
+ object_=_response.json(),
1006
+ ),
1007
+ ),
1008
+ )
1009
+ if _response.status_code == 500:
1010
+ raise InternalServerError(
1011
+ headers=dict(_response.headers),
1012
+ body=typing.cast(
1013
+ InternalServerErrorBody,
1014
+ parse_obj_as(
1015
+ type_=InternalServerErrorBody, # type: ignore
1016
+ object_=_response.json(),
1017
+ ),
1018
+ ),
1019
+ )
1020
+ _response_json = _response.json()
1021
+ except JSONDecodeError:
1022
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1023
+ except ValidationError as e:
1024
+ raise ParsingError(
1025
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1026
+ )
1027
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1028
+
1029
+ def batch_create(
1030
+ self, *, items: typing.Sequence[CreateAaSequenceInput], request_options: typing.Optional[RequestOptions] = None
1031
+ ) -> HttpResponse[BatchCreateAaSequenceResponse]:
1032
+ """
1033
+ Batch create AaSequence synchronously in one transaction. Maximum 25 items per request.
1034
+
1035
+ Parameters
1036
+ ----------
1037
+ items : typing.Sequence[CreateAaSequenceInput]
1038
+
1039
+ request_options : typing.Optional[RequestOptions]
1040
+ Request-specific configuration.
1041
+
1042
+ Returns
1043
+ -------
1044
+ HttpResponse[BatchCreateAaSequenceResponse]
1045
+ Created
1046
+ """
1047
+ _response = self._client_wrapper.httpx_client.request(
1048
+ "api/v3/aa-sequence:batch-create",
1049
+ method="POST",
1050
+ json={
1051
+ "items": convert_and_respect_annotation_metadata(
1052
+ object_=items, annotation=typing.Sequence[CreateAaSequenceInput], direction="write"
1053
+ ),
1054
+ },
1055
+ headers={
1056
+ "content-type": "application/json",
1057
+ },
1058
+ request_options=request_options,
1059
+ omit=OMIT,
1060
+ )
1061
+ try:
1062
+ if 200 <= _response.status_code < 300:
1063
+ _data = typing.cast(
1064
+ BatchCreateAaSequenceResponse,
1065
+ parse_obj_as(
1066
+ type_=BatchCreateAaSequenceResponse, # type: ignore
1067
+ object_=_response.json(),
1068
+ ),
1069
+ )
1070
+ return HttpResponse(response=_response, data=_data)
1071
+ if _response.status_code == 400:
1072
+ raise BadRequestError(
1073
+ headers=dict(_response.headers),
1074
+ body=typing.cast(
1075
+ typing.Any,
1076
+ parse_obj_as(
1077
+ type_=typing.Any, # type: ignore
1078
+ object_=_response.json(),
1079
+ ),
1080
+ ),
1081
+ )
1082
+ if _response.status_code == 403:
1083
+ raise ForbiddenError(
1084
+ headers=dict(_response.headers),
1085
+ body=typing.cast(
1086
+ GeneralError,
1087
+ parse_obj_as(
1088
+ type_=GeneralError, # type: ignore
1089
+ object_=_response.json(),
1090
+ ),
1091
+ ),
1092
+ )
1093
+ if _response.status_code == 404:
1094
+ raise NotFoundError(
1095
+ headers=dict(_response.headers),
1096
+ body=typing.cast(
1097
+ GeneralError,
1098
+ parse_obj_as(
1099
+ type_=GeneralError, # type: ignore
1100
+ object_=_response.json(),
1101
+ ),
1102
+ ),
1103
+ )
1104
+ if _response.status_code == 429:
1105
+ raise TooManyRequestsError(
1106
+ headers=dict(_response.headers),
1107
+ body=typing.cast(
1108
+ GeneralError,
1109
+ parse_obj_as(
1110
+ type_=GeneralError, # type: ignore
1111
+ object_=_response.json(),
1112
+ ),
1113
+ ),
1114
+ )
1115
+ if _response.status_code == 500:
1116
+ raise InternalServerError(
1117
+ headers=dict(_response.headers),
1118
+ body=typing.cast(
1119
+ InternalServerErrorBody,
1120
+ parse_obj_as(
1121
+ type_=InternalServerErrorBody, # type: ignore
1122
+ object_=_response.json(),
1123
+ ),
1124
+ ),
1125
+ )
1126
+ _response_json = _response.json()
1127
+ except JSONDecodeError:
1128
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1129
+ except ValidationError as e:
1130
+ raise ParsingError(
1131
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1132
+ )
1133
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1134
+
1135
+ def batch_update(
1136
+ self,
1137
+ *,
1138
+ items: typing.Sequence[UpdateAaSequenceInputWithPathParams],
1139
+ request_options: typing.Optional[RequestOptions] = None,
1140
+ ) -> HttpResponse[BatchUpdateAaSequenceResponse]:
1141
+ """
1142
+ Batch update AaSequence synchronously in one transaction. Maximum 25 items per request.
1143
+
1144
+ Parameters
1145
+ ----------
1146
+ items : typing.Sequence[UpdateAaSequenceInputWithPathParams]
1147
+
1148
+ request_options : typing.Optional[RequestOptions]
1149
+ Request-specific configuration.
1150
+
1151
+ Returns
1152
+ -------
1153
+ HttpResponse[BatchUpdateAaSequenceResponse]
1154
+ OK
1155
+ """
1156
+ _response = self._client_wrapper.httpx_client.request(
1157
+ "api/v3/aa-sequence:batch-update",
1158
+ method="PATCH",
1159
+ json={
1160
+ "items": convert_and_respect_annotation_metadata(
1161
+ object_=items, annotation=typing.Sequence[UpdateAaSequenceInputWithPathParams], direction="write"
1162
+ ),
1163
+ },
1164
+ headers={
1165
+ "content-type": "application/json",
1166
+ },
1167
+ request_options=request_options,
1168
+ omit=OMIT,
1169
+ )
1170
+ try:
1171
+ if 200 <= _response.status_code < 300:
1172
+ _data = typing.cast(
1173
+ BatchUpdateAaSequenceResponse,
1174
+ parse_obj_as(
1175
+ type_=BatchUpdateAaSequenceResponse, # type: ignore
1176
+ object_=_response.json(),
1177
+ ),
1178
+ )
1179
+ return HttpResponse(response=_response, data=_data)
1180
+ if _response.status_code == 400:
1181
+ raise BadRequestError(
1182
+ headers=dict(_response.headers),
1183
+ body=typing.cast(
1184
+ typing.Any,
1185
+ parse_obj_as(
1186
+ type_=typing.Any, # type: ignore
1187
+ object_=_response.json(),
1188
+ ),
1189
+ ),
1190
+ )
1191
+ if _response.status_code == 403:
1192
+ raise ForbiddenError(
1193
+ headers=dict(_response.headers),
1194
+ body=typing.cast(
1195
+ GeneralError,
1196
+ parse_obj_as(
1197
+ type_=GeneralError, # type: ignore
1198
+ object_=_response.json(),
1199
+ ),
1200
+ ),
1201
+ )
1202
+ if _response.status_code == 404:
1203
+ raise NotFoundError(
1204
+ headers=dict(_response.headers),
1205
+ body=typing.cast(
1206
+ GeneralError,
1207
+ parse_obj_as(
1208
+ type_=GeneralError, # type: ignore
1209
+ object_=_response.json(),
1210
+ ),
1211
+ ),
1212
+ )
1213
+ if _response.status_code == 429:
1214
+ raise TooManyRequestsError(
1215
+ headers=dict(_response.headers),
1216
+ body=typing.cast(
1217
+ GeneralError,
1218
+ parse_obj_as(
1219
+ type_=GeneralError, # type: ignore
1220
+ object_=_response.json(),
1221
+ ),
1222
+ ),
1223
+ )
1224
+ if _response.status_code == 500:
1225
+ raise InternalServerError(
1226
+ headers=dict(_response.headers),
1227
+ body=typing.cast(
1228
+ InternalServerErrorBody,
1229
+ parse_obj_as(
1230
+ type_=InternalServerErrorBody, # type: ignore
1231
+ object_=_response.json(),
1232
+ ),
1233
+ ),
1234
+ )
1235
+ _response_json = _response.json()
1236
+ except JSONDecodeError:
1237
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1238
+ except ValidationError as e:
1239
+ raise ParsingError(
1240
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1241
+ )
1242
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1243
+
1244
+ def bulk_create(
1245
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
1246
+ ) -> HttpResponse[AsyncTaskLink]:
1247
+ """
1248
+ Bulk create AaSequence.
1249
+
1250
+ Parameters
1251
+ ----------
1252
+ file_id : str
1253
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
1254
+
1255
+ request_options : typing.Optional[RequestOptions]
1256
+ Request-specific configuration.
1257
+
1258
+ Returns
1259
+ -------
1260
+ HttpResponse[AsyncTaskLink]
1261
+ Task started
1262
+ """
1263
+ _response = self._client_wrapper.httpx_client.request(
1264
+ "api/v3/aa-sequence:bulk-create",
1265
+ method="POST",
1266
+ json={
1267
+ "fileId": file_id,
1268
+ },
1269
+ request_options=request_options,
1270
+ omit=OMIT,
1271
+ )
1272
+ try:
1273
+ if 200 <= _response.status_code < 300:
1274
+ _data = typing.cast(
1275
+ AsyncTaskLink,
1276
+ parse_obj_as(
1277
+ type_=AsyncTaskLink, # type: ignore
1278
+ object_=_response.json(),
1279
+ ),
1280
+ )
1281
+ return HttpResponse(response=_response, data=_data)
1282
+ if _response.status_code == 400:
1283
+ raise BadRequestError(
1284
+ headers=dict(_response.headers),
1285
+ body=typing.cast(
1286
+ typing.Any,
1287
+ parse_obj_as(
1288
+ type_=typing.Any, # type: ignore
1289
+ object_=_response.json(),
1290
+ ),
1291
+ ),
1292
+ )
1293
+ if _response.status_code == 403:
1294
+ raise ForbiddenError(
1295
+ headers=dict(_response.headers),
1296
+ body=typing.cast(
1297
+ GeneralError,
1298
+ parse_obj_as(
1299
+ type_=GeneralError, # type: ignore
1300
+ object_=_response.json(),
1301
+ ),
1302
+ ),
1303
+ )
1304
+ if _response.status_code == 404:
1305
+ raise NotFoundError(
1306
+ headers=dict(_response.headers),
1307
+ body=typing.cast(
1308
+ GeneralError,
1309
+ parse_obj_as(
1310
+ type_=GeneralError, # type: ignore
1311
+ object_=_response.json(),
1312
+ ),
1313
+ ),
1314
+ )
1315
+ if _response.status_code == 429:
1316
+ raise TooManyRequestsError(
1317
+ headers=dict(_response.headers),
1318
+ body=typing.cast(
1319
+ GeneralError,
1320
+ parse_obj_as(
1321
+ type_=GeneralError, # type: ignore
1322
+ object_=_response.json(),
1323
+ ),
1324
+ ),
1325
+ )
1326
+ if _response.status_code == 500:
1327
+ raise InternalServerError(
1328
+ headers=dict(_response.headers),
1329
+ body=typing.cast(
1330
+ InternalServerErrorBody,
1331
+ parse_obj_as(
1332
+ type_=InternalServerErrorBody, # type: ignore
1333
+ object_=_response.json(),
1334
+ ),
1335
+ ),
1336
+ )
1337
+ _response_json = _response.json()
1338
+ except JSONDecodeError:
1339
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1340
+ except ValidationError as e:
1341
+ raise ParsingError(
1342
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1343
+ )
1344
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1345
+
1346
+ def bulk_update(
1347
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
1348
+ ) -> HttpResponse[AsyncTaskLink]:
1349
+ """
1350
+ Bulk update AaSequence.
1351
+
1352
+ Parameters
1353
+ ----------
1354
+ file_id : str
1355
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
1356
+
1357
+ request_options : typing.Optional[RequestOptions]
1358
+ Request-specific configuration.
1359
+
1360
+ Returns
1361
+ -------
1362
+ HttpResponse[AsyncTaskLink]
1363
+ Task started
1364
+ """
1365
+ _response = self._client_wrapper.httpx_client.request(
1366
+ "api/v3/aa-sequence:bulk-update",
1367
+ method="PATCH",
1368
+ json={
1369
+ "fileId": file_id,
1370
+ },
1371
+ request_options=request_options,
1372
+ omit=OMIT,
1373
+ )
1374
+ try:
1375
+ if 200 <= _response.status_code < 300:
1376
+ _data = typing.cast(
1377
+ AsyncTaskLink,
1378
+ parse_obj_as(
1379
+ type_=AsyncTaskLink, # type: ignore
1380
+ object_=_response.json(),
1381
+ ),
1382
+ )
1383
+ return HttpResponse(response=_response, data=_data)
1384
+ if _response.status_code == 400:
1385
+ raise BadRequestError(
1386
+ headers=dict(_response.headers),
1387
+ body=typing.cast(
1388
+ typing.Any,
1389
+ parse_obj_as(
1390
+ type_=typing.Any, # type: ignore
1391
+ object_=_response.json(),
1392
+ ),
1393
+ ),
1394
+ )
1395
+ if _response.status_code == 403:
1396
+ raise ForbiddenError(
1397
+ headers=dict(_response.headers),
1398
+ body=typing.cast(
1399
+ GeneralError,
1400
+ parse_obj_as(
1401
+ type_=GeneralError, # type: ignore
1402
+ object_=_response.json(),
1403
+ ),
1404
+ ),
1405
+ )
1406
+ if _response.status_code == 404:
1407
+ raise NotFoundError(
1408
+ headers=dict(_response.headers),
1409
+ body=typing.cast(
1410
+ GeneralError,
1411
+ parse_obj_as(
1412
+ type_=GeneralError, # type: ignore
1413
+ object_=_response.json(),
1414
+ ),
1415
+ ),
1416
+ )
1417
+ if _response.status_code == 429:
1418
+ raise TooManyRequestsError(
1419
+ headers=dict(_response.headers),
1420
+ body=typing.cast(
1421
+ GeneralError,
1422
+ parse_obj_as(
1423
+ type_=GeneralError, # type: ignore
1424
+ object_=_response.json(),
1425
+ ),
1426
+ ),
1427
+ )
1428
+ if _response.status_code == 500:
1429
+ raise InternalServerError(
1430
+ headers=dict(_response.headers),
1431
+ body=typing.cast(
1432
+ InternalServerErrorBody,
1433
+ parse_obj_as(
1434
+ type_=InternalServerErrorBody, # type: ignore
1435
+ object_=_response.json(),
1436
+ ),
1437
+ ),
1438
+ )
1439
+ _response_json = _response.json()
1440
+ except JSONDecodeError:
1441
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1442
+ except ValidationError as e:
1443
+ raise ParsingError(
1444
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1445
+ )
1446
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1447
+
1448
+
1449
+ class AsyncRawAaSequenceClient:
1450
+ def __init__(self, *, client_wrapper: AsyncClientWrapper):
1451
+ self._client_wrapper = client_wrapper
1452
+
1453
+ async def create(
1454
+ self,
1455
+ *,
1456
+ amino_acids: str,
1457
+ folder_id: str,
1458
+ name: str,
1459
+ aliases: typing.Optional[typing.Sequence[str]] = OMIT,
1460
+ annotations: typing.Optional[typing.Sequence[AaAnnotationInput]] = OMIT,
1461
+ author_ids: typing.Optional[typing.Sequence[str]] = OMIT,
1462
+ custom_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
1463
+ entity_registry_id: typing.Optional[str] = OMIT,
1464
+ naming_strategy: typing.Optional[CreateAaSequenceInputNamingStrategy] = OMIT,
1465
+ registry_id: typing.Optional[str] = OMIT,
1466
+ schema_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
1467
+ schema_id: typing.Optional[str] = OMIT,
1468
+ request_options: typing.Optional[RequestOptions] = None,
1469
+ ) -> AsyncHttpResponse[AaSequence]:
1470
+ """
1471
+ Create a new AA sequence.
1472
+
1473
+ Parameters
1474
+ ----------
1475
+ amino_acids : str
1476
+ Amino acids of the AA sequence. Letters A-Z only (case-insensitive). Invalid characters are rejected.
1477
+
1478
+ folder_id : str
1479
+
1480
+ name : str
1481
+ Name of the item.
1482
+
1483
+ aliases : typing.Optional[typing.Sequence[str]]
1484
+ Array of aliases
1485
+
1486
+ annotations : typing.Optional[typing.Sequence[AaAnnotationInput]]
1487
+ Optional annotations to create on the new sequence. Each entry defines a region with 0-based `start` (inclusive) and `end` (exclusive) indices.
1488
+
1489
+ author_ids : typing.Optional[typing.Sequence[str]]
1490
+
1491
+ custom_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
1492
+ Custom fields set on the AA sequence.
1493
+
1494
+ entity_registry_id : typing.Optional[str]
1495
+ Registry ID to assign to the entity. If one is specified, the labeling_strategy must be unspecified.
1496
+
1497
+ naming_strategy : typing.Optional[CreateAaSequenceInputNamingStrategy]
1498
+ Strategy to use for labeling the item in the registry. If one is specified, the entity_registry_id must be unspecified.
1499
+
1500
+ registry_id : typing.Optional[str]
1501
+ A not null value means the entity should be registered. If not null, the value must match the registry of the item's schema.
1502
+
1503
+ schema_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
1504
+
1505
+ schema_id : typing.Optional[str]
1506
+
1507
+ request_options : typing.Optional[RequestOptions]
1508
+ Request-specific configuration.
1509
+
1510
+ Returns
1511
+ -------
1512
+ AsyncHttpResponse[AaSequence]
1513
+ Created
1514
+ """
1515
+ _response = await self._client_wrapper.httpx_client.request(
1516
+ "api/v3/aa-sequence",
1517
+ method="POST",
1518
+ json={
1519
+ "aliases": aliases,
1520
+ "aminoAcids": amino_acids,
1521
+ "annotations": convert_and_respect_annotation_metadata(
1522
+ object_=annotations, annotation=typing.Sequence[AaAnnotationInput], direction="write"
1523
+ ),
1524
+ "authorIds": author_ids,
1525
+ "customFields": convert_and_respect_annotation_metadata(
1526
+ object_=custom_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
1527
+ ),
1528
+ "entityRegistryId": entity_registry_id,
1529
+ "folderId": folder_id,
1530
+ "name": name,
1531
+ "namingStrategy": naming_strategy,
1532
+ "registryId": registry_id,
1533
+ "schemaFields": convert_and_respect_annotation_metadata(
1534
+ object_=schema_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
1535
+ ),
1536
+ "schemaId": schema_id,
1537
+ },
1538
+ request_options=request_options,
1539
+ omit=OMIT,
1540
+ )
1541
+ try:
1542
+ if 200 <= _response.status_code < 300:
1543
+ _data = typing.cast(
1544
+ AaSequence,
1545
+ parse_obj_as(
1546
+ type_=AaSequence, # type: ignore
1547
+ object_=_response.json(),
1548
+ ),
1549
+ )
1550
+ return AsyncHttpResponse(response=_response, data=_data)
1551
+ if _response.status_code == 400:
1552
+ raise BadRequestError(
1553
+ headers=dict(_response.headers),
1554
+ body=typing.cast(
1555
+ typing.Any,
1556
+ parse_obj_as(
1557
+ type_=typing.Any, # type: ignore
1558
+ object_=_response.json(),
1559
+ ),
1560
+ ),
1561
+ )
1562
+ if _response.status_code == 403:
1563
+ raise ForbiddenError(
1564
+ headers=dict(_response.headers),
1565
+ body=typing.cast(
1566
+ GeneralError,
1567
+ parse_obj_as(
1568
+ type_=GeneralError, # type: ignore
1569
+ object_=_response.json(),
1570
+ ),
1571
+ ),
1572
+ )
1573
+ if _response.status_code == 404:
1574
+ raise NotFoundError(
1575
+ headers=dict(_response.headers),
1576
+ body=typing.cast(
1577
+ GeneralError,
1578
+ parse_obj_as(
1579
+ type_=GeneralError, # type: ignore
1580
+ object_=_response.json(),
1581
+ ),
1582
+ ),
1583
+ )
1584
+ if _response.status_code == 429:
1585
+ raise TooManyRequestsError(
1586
+ headers=dict(_response.headers),
1587
+ body=typing.cast(
1588
+ GeneralError,
1589
+ parse_obj_as(
1590
+ type_=GeneralError, # type: ignore
1591
+ object_=_response.json(),
1592
+ ),
1593
+ ),
1594
+ )
1595
+ if _response.status_code == 500:
1596
+ raise InternalServerError(
1597
+ headers=dict(_response.headers),
1598
+ body=typing.cast(
1599
+ InternalServerErrorBody,
1600
+ parse_obj_as(
1601
+ type_=InternalServerErrorBody, # type: ignore
1602
+ object_=_response.json(),
1603
+ ),
1604
+ ),
1605
+ )
1606
+ _response_json = _response.json()
1607
+ except JSONDecodeError:
1608
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1609
+ except ValidationError as e:
1610
+ raise ParsingError(
1611
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1612
+ )
1613
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1614
+
1615
+ async def list(
1616
+ self,
1617
+ *,
1618
+ amino_acids_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1619
+ archive_reason_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1620
+ archived_any_of: typing.Optional[typing.Union[bool, typing.Sequence[bool]]] = None,
1621
+ authors_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1622
+ created_at_gt: typing.Optional[str] = None,
1623
+ created_at_gte: typing.Optional[str] = None,
1624
+ created_at_lt: typing.Optional[str] = None,
1625
+ created_at_lte: typing.Optional[str] = None,
1626
+ creator_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1627
+ entity_registry_ids_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1628
+ fieldset_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1629
+ folder_eq: typing.Optional[str] = None,
1630
+ id_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1631
+ mentioned_in_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1632
+ modified_at_gt: typing.Optional[str] = None,
1633
+ modified_at_gte: typing.Optional[str] = None,
1634
+ modified_at_lt: typing.Optional[str] = None,
1635
+ modified_at_lte: typing.Optional[str] = None,
1636
+ name_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1637
+ name_any_of_case_sensitive: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1638
+ next_token: typing.Optional[str] = None,
1639
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1640
+ page_size: typing.Optional[int] = None,
1641
+ project_eq: typing.Optional[str] = None,
1642
+ registry_eq: typing.Optional[str] = None,
1643
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1644
+ schema_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1645
+ schema_eq: typing.Optional[str] = None,
1646
+ system_category_any_of: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1647
+ sort: typing.Optional[ListAaSequenceRequestSort] = None,
1648
+ request_options: typing.Optional[RequestOptions] = None,
1649
+ ) -> AsyncPager[AaSequence, AaSequencePaginatedList]:
1650
+ """
1651
+ List AaSequence items.
1652
+
1653
+ Parameters
1654
+ ----------
1655
+ amino_acids_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1656
+ Restricts results to those whose sequence exactly matches any of the specified amino acid sequences (case-insensitive). Comma-separated list.
1657
+
1658
+ archive_reason_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1659
+ Restricts items to those with any of the specified archive reasons. Use "NOT_ARCHIVED" to filter for unarchived items. Use "ANY_ARCHIVED" to filter for archived items regardless of reason. Use "ANY_ARCHIVED_OR_NOT_ARCHIVED" to return items for both archived and unarchived. Comma-separated list.
1660
+
1661
+ archived_any_of : typing.Optional[typing.Union[bool, typing.Sequence[bool]]]
1662
+ If true, returns archived items. If false, returns unarchived items. If both true and false, returns archived and unarchived items. Comma-separated list.
1663
+
1664
+ authors_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1665
+ Restricts results to those whose author matches any of the specified user or author IDs. Comma-separated list.
1666
+
1667
+ created_at_gt : typing.Optional[str]
1668
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created after the specified time. e.g. > 2017-04-30.
1669
+
1670
+ created_at_gte : typing.Optional[str]
1671
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or after the specified time. e.g. >= 2017-04-30.
1672
+
1673
+ created_at_lt : typing.Optional[str]
1674
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created before the specified time. e.g. < 2017-04-30.
1675
+
1676
+ created_at_lte : typing.Optional[str]
1677
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those created at or before the specified time. e.g. <= 2017-04-30.
1678
+
1679
+ creator_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1680
+ Restricts results to those created by any of the specified user IDs. Comma-separated list.
1681
+
1682
+ entity_registry_ids_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1683
+ Restricts results to those that match any of the specified entity registry IDs. Comma-separated list.
1684
+
1685
+ fieldset_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1686
+ Restricts results to those whose schema implements any of the specified fieldset API IDs (custom schema interfaces). Comma-separated list.
1687
+
1688
+ folder_eq : typing.Optional[str]
1689
+ ID of a folder. Restricts results to its direct children.
1690
+
1691
+ id_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1692
+ Restricts results to those matching any of the specified IDs. Comma-separated list.
1693
+
1694
+ mentioned_in_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1695
+ Restricts results to items mentioned in entries matching any of the specified entry IDs. Comma-separated list.
1696
+
1697
+ modified_at_gt : typing.Optional[str]
1698
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified after the specified time. e.g. > 2017-04-30.
1699
+
1700
+ modified_at_gte : typing.Optional[str]
1701
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or after the specified time. e.g. >= 2017-04-30.
1702
+
1703
+ modified_at_lt : typing.Optional[str]
1704
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified before the specified time. e.g. < 2017-04-30.
1705
+
1706
+ modified_at_lte : typing.Optional[str]
1707
+ Datetime, in RFC 3339 format. Time zone defaults to UTC. Restricts results to those modified at or before the specified time. e.g. <= 2017-04-30.
1708
+
1709
+ name_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1710
+ Restricts results to those that match any of the specified names. Case insensitive. Warning - this filter can be non-performant due to case insensitivity. Ensure only one name filter is used at a time. Comma-separated list.
1711
+
1712
+ name_any_of_case_sensitive : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1713
+ Restricts results to those that match any of the specified names. Case sensitive. Ensure only one name filter is used at a time. Comma-separated list.
1714
+
1715
+ next_token : typing.Optional[str]
1716
+ Token for pagination
1717
+
1718
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1719
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
1720
+
1721
+ page_size : typing.Optional[int]
1722
+ Number of results to return. Defaults to 50, maximum of 100.
1723
+
1724
+ project_eq : typing.Optional[str]
1725
+ ID of a project. Restricts results to those in the project.
1726
+
1727
+ registry_eq : typing.Optional[str]
1728
+ ID of a registry. Restricts results to those registered in this registry. Specifying "null" returns unregistered items.
1729
+
1730
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1731
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
1732
+
1733
+ schema_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1734
+ Restricts results to those that match any of the specified schema IDs. Use only one `schema` filter arg at a time. Comma-separated list.
1735
+
1736
+ schema_eq : typing.Optional[str]
1737
+ Single schema ID. Restricts results to those that match the specified schema exactly. Use only one `schema` filter arg at a time.
1738
+
1739
+ system_category_any_of : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1740
+ Restricts results to those whose schema implements any of the specified system category API IDs (non-exclusive static schema interfaces). Comma-separated list.
1741
+
1742
+ sort : typing.Optional[ListAaSequenceRequestSort]
1743
+ Method by which to order results. Valid sorts are: createdAt (created time, oldest first) and modifiedAt (modified time, oldest first). Use :asc or :desc to specify ascending or descending order. Default is modifiedAt:desc.
1744
+
1745
+ request_options : typing.Optional[RequestOptions]
1746
+ Request-specific configuration.
1747
+
1748
+ Returns
1749
+ -------
1750
+ AsyncPager[AaSequence, AaSequencePaginatedList]
1751
+ OK
1752
+ """
1753
+ _response = await self._client_wrapper.httpx_client.request(
1754
+ "api/v3/aa-sequence/items",
1755
+ method="GET",
1756
+ params={
1757
+ "aminoAcids.anyOf": ",".join(map(str, amino_acids_any_of))
1758
+ if isinstance(amino_acids_any_of, (list, tuple, set))
1759
+ else amino_acids_any_of,
1760
+ "archiveReason.anyOf": ",".join(map(str, archive_reason_any_of))
1761
+ if isinstance(archive_reason_any_of, (list, tuple, set))
1762
+ else archive_reason_any_of,
1763
+ "archived.anyOf": ",".join(map(str, archived_any_of))
1764
+ if isinstance(archived_any_of, (list, tuple, set))
1765
+ else archived_any_of,
1766
+ "authors.anyOf": ",".join(map(str, authors_any_of))
1767
+ if isinstance(authors_any_of, (list, tuple, set))
1768
+ else authors_any_of,
1769
+ "createdAt.gt": created_at_gt,
1770
+ "createdAt.gte": created_at_gte,
1771
+ "createdAt.lt": created_at_lt,
1772
+ "createdAt.lte": created_at_lte,
1773
+ "creator.anyOf": ",".join(map(str, creator_any_of))
1774
+ if isinstance(creator_any_of, (list, tuple, set))
1775
+ else creator_any_of,
1776
+ "entityRegistryIds.anyOf": ",".join(map(str, entity_registry_ids_any_of))
1777
+ if isinstance(entity_registry_ids_any_of, (list, tuple, set))
1778
+ else entity_registry_ids_any_of,
1779
+ "fieldset.anyOf": ",".join(map(str, fieldset_any_of))
1780
+ if isinstance(fieldset_any_of, (list, tuple, set))
1781
+ else fieldset_any_of,
1782
+ "folder.eq": folder_eq,
1783
+ "id.anyOf": ",".join(map(str, id_any_of)) if isinstance(id_any_of, (list, tuple, set)) else id_any_of,
1784
+ "mentionedIn.anyOf": ",".join(map(str, mentioned_in_any_of))
1785
+ if isinstance(mentioned_in_any_of, (list, tuple, set))
1786
+ else mentioned_in_any_of,
1787
+ "modifiedAt.gt": modified_at_gt,
1788
+ "modifiedAt.gte": modified_at_gte,
1789
+ "modifiedAt.lt": modified_at_lt,
1790
+ "modifiedAt.lte": modified_at_lte,
1791
+ "name.anyOf": ",".join(map(str, name_any_of))
1792
+ if isinstance(name_any_of, (list, tuple, set))
1793
+ else name_any_of,
1794
+ "name.anyOf.caseSensitive": ",".join(map(str, name_any_of_case_sensitive))
1795
+ if isinstance(name_any_of_case_sensitive, (list, tuple, set))
1796
+ else name_any_of_case_sensitive,
1797
+ "nextToken": next_token,
1798
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
1799
+ "pageSize": page_size,
1800
+ "project.eq": project_eq,
1801
+ "registry.eq": registry_eq,
1802
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
1803
+ "schema.anyOf": ",".join(map(str, schema_any_of))
1804
+ if isinstance(schema_any_of, (list, tuple, set))
1805
+ else schema_any_of,
1806
+ "schema.eq": schema_eq,
1807
+ "systemCategory.anyOf": ",".join(map(str, system_category_any_of))
1808
+ if isinstance(system_category_any_of, (list, tuple, set))
1809
+ else system_category_any_of,
1810
+ "sort": sort,
1811
+ },
1812
+ request_options=request_options,
1813
+ )
1814
+ try:
1815
+ if 200 <= _response.status_code < 300:
1816
+ _parsed_response = typing.cast(
1817
+ AaSequencePaginatedList,
1818
+ parse_obj_as(
1819
+ type_=AaSequencePaginatedList, # type: ignore
1820
+ object_=_response.json(),
1821
+ ),
1822
+ )
1823
+ _items = _parsed_response.items
1824
+ _parsed_next = _parsed_response.next_token
1825
+ _has_next = _parsed_next is not None and _parsed_next != ""
1826
+
1827
+ async def _get_next():
1828
+ return await self.list(
1829
+ amino_acids_any_of=amino_acids_any_of,
1830
+ archive_reason_any_of=archive_reason_any_of,
1831
+ archived_any_of=archived_any_of,
1832
+ authors_any_of=authors_any_of,
1833
+ created_at_gt=created_at_gt,
1834
+ created_at_gte=created_at_gte,
1835
+ created_at_lt=created_at_lt,
1836
+ created_at_lte=created_at_lte,
1837
+ creator_any_of=creator_any_of,
1838
+ entity_registry_ids_any_of=entity_registry_ids_any_of,
1839
+ fieldset_any_of=fieldset_any_of,
1840
+ folder_eq=folder_eq,
1841
+ id_any_of=id_any_of,
1842
+ mentioned_in_any_of=mentioned_in_any_of,
1843
+ modified_at_gt=modified_at_gt,
1844
+ modified_at_gte=modified_at_gte,
1845
+ modified_at_lt=modified_at_lt,
1846
+ modified_at_lte=modified_at_lte,
1847
+ name_any_of=name_any_of,
1848
+ name_any_of_case_sensitive=name_any_of_case_sensitive,
1849
+ next_token=_parsed_next,
1850
+ omit=omit,
1851
+ page_size=page_size,
1852
+ project_eq=project_eq,
1853
+ registry_eq=registry_eq,
1854
+ returning=returning,
1855
+ schema_any_of=schema_any_of,
1856
+ schema_eq=schema_eq,
1857
+ system_category_any_of=system_category_any_of,
1858
+ sort=sort,
1859
+ request_options=request_options,
1860
+ )
1861
+
1862
+ return AsyncPager(has_next=_has_next, items=_items, get_next=_get_next, response=_parsed_response)
1863
+ if _response.status_code == 400:
1864
+ raise BadRequestError(
1865
+ headers=dict(_response.headers),
1866
+ body=typing.cast(
1867
+ typing.Any,
1868
+ parse_obj_as(
1869
+ type_=typing.Any, # type: ignore
1870
+ object_=_response.json(),
1871
+ ),
1872
+ ),
1873
+ )
1874
+ if _response.status_code == 403:
1875
+ raise ForbiddenError(
1876
+ headers=dict(_response.headers),
1877
+ body=typing.cast(
1878
+ GeneralError,
1879
+ parse_obj_as(
1880
+ type_=GeneralError, # type: ignore
1881
+ object_=_response.json(),
1882
+ ),
1883
+ ),
1884
+ )
1885
+ if _response.status_code == 404:
1886
+ raise NotFoundError(
1887
+ headers=dict(_response.headers),
1888
+ body=typing.cast(
1889
+ GeneralError,
1890
+ parse_obj_as(
1891
+ type_=GeneralError, # type: ignore
1892
+ object_=_response.json(),
1893
+ ),
1894
+ ),
1895
+ )
1896
+ if _response.status_code == 429:
1897
+ raise TooManyRequestsError(
1898
+ headers=dict(_response.headers),
1899
+ body=typing.cast(
1900
+ GeneralError,
1901
+ parse_obj_as(
1902
+ type_=GeneralError, # type: ignore
1903
+ object_=_response.json(),
1904
+ ),
1905
+ ),
1906
+ )
1907
+ if _response.status_code == 500:
1908
+ raise InternalServerError(
1909
+ headers=dict(_response.headers),
1910
+ body=typing.cast(
1911
+ InternalServerErrorBody,
1912
+ parse_obj_as(
1913
+ type_=InternalServerErrorBody, # type: ignore
1914
+ object_=_response.json(),
1915
+ ),
1916
+ ),
1917
+ )
1918
+ _response_json = _response.json()
1919
+ except JSONDecodeError:
1920
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1921
+ except ValidationError as e:
1922
+ raise ParsingError(
1923
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1924
+ )
1925
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1926
+
1927
+ async def get(
1928
+ self,
1929
+ aa_sequence_id: str,
1930
+ *,
1931
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1932
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
1933
+ request_options: typing.Optional[RequestOptions] = None,
1934
+ ) -> AsyncHttpResponse[AaSequence]:
1935
+ """
1936
+ Get a single AaSequence by ID.
1937
+
1938
+ Parameters
1939
+ ----------
1940
+ aa_sequence_id : str
1941
+ ID of the AaSequence.
1942
+
1943
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1944
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
1945
+
1946
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
1947
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
1948
+
1949
+ request_options : typing.Optional[RequestOptions]
1950
+ Request-specific configuration.
1951
+
1952
+ Returns
1953
+ -------
1954
+ AsyncHttpResponse[AaSequence]
1955
+ OK
1956
+ """
1957
+ _response = await self._client_wrapper.httpx_client.request(
1958
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}",
1959
+ method="GET",
1960
+ params={
1961
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
1962
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
1963
+ },
1964
+ request_options=request_options,
1965
+ )
1966
+ try:
1967
+ if 200 <= _response.status_code < 300:
1968
+ _data = typing.cast(
1969
+ AaSequence,
1970
+ parse_obj_as(
1971
+ type_=AaSequence, # type: ignore
1972
+ object_=_response.json(),
1973
+ ),
1974
+ )
1975
+ return AsyncHttpResponse(response=_response, data=_data)
1976
+ if _response.status_code == 400:
1977
+ raise BadRequestError(
1978
+ headers=dict(_response.headers),
1979
+ body=typing.cast(
1980
+ typing.Any,
1981
+ parse_obj_as(
1982
+ type_=typing.Any, # type: ignore
1983
+ object_=_response.json(),
1984
+ ),
1985
+ ),
1986
+ )
1987
+ if _response.status_code == 403:
1988
+ raise ForbiddenError(
1989
+ headers=dict(_response.headers),
1990
+ body=typing.cast(
1991
+ GeneralError,
1992
+ parse_obj_as(
1993
+ type_=GeneralError, # type: ignore
1994
+ object_=_response.json(),
1995
+ ),
1996
+ ),
1997
+ )
1998
+ if _response.status_code == 404:
1999
+ raise NotFoundError(
2000
+ headers=dict(_response.headers),
2001
+ body=typing.cast(
2002
+ GeneralError,
2003
+ parse_obj_as(
2004
+ type_=GeneralError, # type: ignore
2005
+ object_=_response.json(),
2006
+ ),
2007
+ ),
2008
+ )
2009
+ if _response.status_code == 429:
2010
+ raise TooManyRequestsError(
2011
+ headers=dict(_response.headers),
2012
+ body=typing.cast(
2013
+ GeneralError,
2014
+ parse_obj_as(
2015
+ type_=GeneralError, # type: ignore
2016
+ object_=_response.json(),
2017
+ ),
2018
+ ),
2019
+ )
2020
+ if _response.status_code == 500:
2021
+ raise InternalServerError(
2022
+ headers=dict(_response.headers),
2023
+ body=typing.cast(
2024
+ InternalServerErrorBody,
2025
+ parse_obj_as(
2026
+ type_=InternalServerErrorBody, # type: ignore
2027
+ object_=_response.json(),
2028
+ ),
2029
+ ),
2030
+ )
2031
+ _response_json = _response.json()
2032
+ except JSONDecodeError:
2033
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2034
+ except ValidationError as e:
2035
+ raise ParsingError(
2036
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2037
+ )
2038
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2039
+
2040
+ async def update(
2041
+ self,
2042
+ aa_sequence_id: str,
2043
+ *,
2044
+ aliases: typing.Optional[typing.Sequence[str]] = OMIT,
2045
+ amino_acids: typing.Optional[str] = OMIT,
2046
+ annotations: typing.Optional[typing.Sequence[AaAnnotationInputUpdate]] = OMIT,
2047
+ archive_reason: typing.Optional[str] = OMIT,
2048
+ archived: typing.Optional[bool] = OMIT,
2049
+ author_ids: typing.Optional[typing.Sequence[str]] = OMIT,
2050
+ custom_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
2051
+ entity_registry_id: typing.Optional[str] = OMIT,
2052
+ folder_id: typing.Optional[str] = OMIT,
2053
+ name: typing.Optional[str] = OMIT,
2054
+ naming_strategy: typing.Optional[UpdateAaSequenceInputNamingStrategy] = OMIT,
2055
+ registry_id: typing.Optional[str] = OMIT,
2056
+ schema_fields: typing.Optional[typing.Dict[str, FieldValueInput]] = OMIT,
2057
+ schema_id: typing.Optional[str] = OMIT,
2058
+ request_options: typing.Optional[RequestOptions] = None,
2059
+ ) -> AsyncHttpResponse[AaSequence]:
2060
+ """
2061
+ Update an AA sequence.
2062
+
2063
+ Parameters
2064
+ ----------
2065
+ aa_sequence_id : str
2066
+ ID of the AaSequence.
2067
+
2068
+ aliases : typing.Optional[typing.Sequence[str]]
2069
+ Array of aliases
2070
+
2071
+ amino_acids : typing.Optional[str]
2072
+ Updates the amino acids of the AA sequence when provided. Letters A-Z only (case-insensitive). Invalid characters are rejected. The request must also include an `annotations` property (use `annotations: []` to clear annotations); that value replaces the sequence's full annotation set.
2073
+
2074
+ annotations : typing.Optional[typing.Sequence[AaAnnotationInputUpdate]]
2075
+ Replaces the sequence's full annotation set when provided. Include `annotationId` on an entry to update an existing annotation; omit it to create a new one.
2076
+
2077
+ archive_reason : typing.Optional[str]
2078
+
2079
+ archived : typing.Optional[bool]
2080
+
2081
+ author_ids : typing.Optional[typing.Sequence[str]]
2082
+
2083
+ custom_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
2084
+ Custom fields set on the AA sequence.
2085
+
2086
+ entity_registry_id : typing.Optional[str]
2087
+ Registry ID to assign to the entity. When registering, specifying this value sets the registry ID of the entity. When already registered, specifying this value updates the entity's registry ID. If set, naming_strategy must be unspecified.
2088
+
2089
+ folder_id : typing.Optional[str]
2090
+
2091
+ name : typing.Optional[str]
2092
+ Name of the item.
2093
+
2094
+ naming_strategy : typing.Optional[UpdateAaSequenceInputNamingStrategy]
2095
+ Strategy to use for labeling the item in the registry if registering. If one is specified, the entity_registry_id must be unspecified.
2096
+
2097
+ registry_id : typing.Optional[str]
2098
+ A not null value means the entity should be registered. A null value means it should be unregistered. If not null, the value must match the registry of the item's schema.
2099
+
2100
+ schema_fields : typing.Optional[typing.Dict[str, FieldValueInput]]
2101
+
2102
+ schema_id : typing.Optional[str]
2103
+
2104
+ request_options : typing.Optional[RequestOptions]
2105
+ Request-specific configuration.
2106
+
2107
+ Returns
2108
+ -------
2109
+ AsyncHttpResponse[AaSequence]
2110
+ OK
2111
+ """
2112
+ _response = await self._client_wrapper.httpx_client.request(
2113
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}",
2114
+ method="PATCH",
2115
+ json={
2116
+ "aliases": aliases,
2117
+ "aminoAcids": amino_acids,
2118
+ "annotations": convert_and_respect_annotation_metadata(
2119
+ object_=annotations, annotation=typing.Sequence[AaAnnotationInputUpdate], direction="write"
2120
+ ),
2121
+ "archiveReason": archive_reason,
2122
+ "archived": archived,
2123
+ "authorIds": author_ids,
2124
+ "customFields": convert_and_respect_annotation_metadata(
2125
+ object_=custom_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
2126
+ ),
2127
+ "entityRegistryId": entity_registry_id,
2128
+ "folderId": folder_id,
2129
+ "name": name,
2130
+ "namingStrategy": naming_strategy,
2131
+ "registryId": registry_id,
2132
+ "schemaFields": convert_and_respect_annotation_metadata(
2133
+ object_=schema_fields, annotation=typing.Dict[str, FieldValueInput], direction="write"
2134
+ ),
2135
+ "schemaId": schema_id,
2136
+ },
2137
+ headers={
2138
+ "content-type": "application/json",
2139
+ },
2140
+ request_options=request_options,
2141
+ omit=OMIT,
2142
+ )
2143
+ try:
2144
+ if 200 <= _response.status_code < 300:
2145
+ _data = typing.cast(
2146
+ AaSequence,
2147
+ parse_obj_as(
2148
+ type_=AaSequence, # type: ignore
2149
+ object_=_response.json(),
2150
+ ),
2151
+ )
2152
+ return AsyncHttpResponse(response=_response, data=_data)
2153
+ if _response.status_code == 400:
2154
+ raise BadRequestError(
2155
+ headers=dict(_response.headers),
2156
+ body=typing.cast(
2157
+ typing.Any,
2158
+ parse_obj_as(
2159
+ type_=typing.Any, # type: ignore
2160
+ object_=_response.json(),
2161
+ ),
2162
+ ),
2163
+ )
2164
+ if _response.status_code == 403:
2165
+ raise ForbiddenError(
2166
+ headers=dict(_response.headers),
2167
+ body=typing.cast(
2168
+ GeneralError,
2169
+ parse_obj_as(
2170
+ type_=GeneralError, # type: ignore
2171
+ object_=_response.json(),
2172
+ ),
2173
+ ),
2174
+ )
2175
+ if _response.status_code == 404:
2176
+ raise NotFoundError(
2177
+ headers=dict(_response.headers),
2178
+ body=typing.cast(
2179
+ GeneralError,
2180
+ parse_obj_as(
2181
+ type_=GeneralError, # type: ignore
2182
+ object_=_response.json(),
2183
+ ),
2184
+ ),
2185
+ )
2186
+ if _response.status_code == 429:
2187
+ raise TooManyRequestsError(
2188
+ headers=dict(_response.headers),
2189
+ body=typing.cast(
2190
+ GeneralError,
2191
+ parse_obj_as(
2192
+ type_=GeneralError, # type: ignore
2193
+ object_=_response.json(),
2194
+ ),
2195
+ ),
2196
+ )
2197
+ if _response.status_code == 500:
2198
+ raise InternalServerError(
2199
+ headers=dict(_response.headers),
2200
+ body=typing.cast(
2201
+ InternalServerErrorBody,
2202
+ parse_obj_as(
2203
+ type_=InternalServerErrorBody, # type: ignore
2204
+ object_=_response.json(),
2205
+ ),
2206
+ ),
2207
+ )
2208
+ _response_json = _response.json()
2209
+ except JSONDecodeError:
2210
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2211
+ except ValidationError as e:
2212
+ raise ParsingError(
2213
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2214
+ )
2215
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2216
+
2217
+ async def list_annotations(
2218
+ self,
2219
+ aa_sequence_id: str,
2220
+ *,
2221
+ next_token: typing.Optional[str] = None,
2222
+ page_size: typing.Optional[int] = None,
2223
+ request_options: typing.Optional[RequestOptions] = None,
2224
+ ) -> AsyncPager[AaAnnotation, AaAnnotationPaginatedList]:
2225
+ """
2226
+ List AaAnnotation items.
2227
+
2228
+ Parameters
2229
+ ----------
2230
+ aa_sequence_id : str
2231
+ ID of the AaSequence.
2232
+
2233
+ next_token : typing.Optional[str]
2234
+ Token for pagination
2235
+
2236
+ page_size : typing.Optional[int]
2237
+ Number of results to return. Defaults to 50, maximum of 100.
2238
+
2239
+ request_options : typing.Optional[RequestOptions]
2240
+ Request-specific configuration.
2241
+
2242
+ Returns
2243
+ -------
2244
+ AsyncPager[AaAnnotation, AaAnnotationPaginatedList]
2245
+ OK
2246
+ """
2247
+ _response = await self._client_wrapper.httpx_client.request(
2248
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}/annotations/items",
2249
+ method="GET",
2250
+ params={
2251
+ "nextToken": next_token,
2252
+ "pageSize": page_size,
2253
+ },
2254
+ request_options=request_options,
2255
+ )
2256
+ try:
2257
+ if 200 <= _response.status_code < 300:
2258
+ _parsed_response = typing.cast(
2259
+ AaAnnotationPaginatedList,
2260
+ parse_obj_as(
2261
+ type_=AaAnnotationPaginatedList, # type: ignore
2262
+ object_=_response.json(),
2263
+ ),
2264
+ )
2265
+ _items = _parsed_response.items
2266
+ _parsed_next = _parsed_response.next_token
2267
+ _has_next = _parsed_next is not None and _parsed_next != ""
2268
+
2269
+ async def _get_next():
2270
+ return await self.list_annotations(
2271
+ aa_sequence_id,
2272
+ next_token=_parsed_next,
2273
+ page_size=page_size,
2274
+ request_options=request_options,
2275
+ )
2276
+
2277
+ return AsyncPager(has_next=_has_next, items=_items, get_next=_get_next, response=_parsed_response)
2278
+ if _response.status_code == 400:
2279
+ raise BadRequestError(
2280
+ headers=dict(_response.headers),
2281
+ body=typing.cast(
2282
+ typing.Any,
2283
+ parse_obj_as(
2284
+ type_=typing.Any, # type: ignore
2285
+ object_=_response.json(),
2286
+ ),
2287
+ ),
2288
+ )
2289
+ if _response.status_code == 403:
2290
+ raise ForbiddenError(
2291
+ headers=dict(_response.headers),
2292
+ body=typing.cast(
2293
+ GeneralError,
2294
+ parse_obj_as(
2295
+ type_=GeneralError, # type: ignore
2296
+ object_=_response.json(),
2297
+ ),
2298
+ ),
2299
+ )
2300
+ if _response.status_code == 404:
2301
+ raise NotFoundError(
2302
+ headers=dict(_response.headers),
2303
+ body=typing.cast(
2304
+ GeneralError,
2305
+ parse_obj_as(
2306
+ type_=GeneralError, # type: ignore
2307
+ object_=_response.json(),
2308
+ ),
2309
+ ),
2310
+ )
2311
+ if _response.status_code == 429:
2312
+ raise TooManyRequestsError(
2313
+ headers=dict(_response.headers),
2314
+ body=typing.cast(
2315
+ GeneralError,
2316
+ parse_obj_as(
2317
+ type_=GeneralError, # type: ignore
2318
+ object_=_response.json(),
2319
+ ),
2320
+ ),
2321
+ )
2322
+ if _response.status_code == 500:
2323
+ raise InternalServerError(
2324
+ headers=dict(_response.headers),
2325
+ body=typing.cast(
2326
+ InternalServerErrorBody,
2327
+ parse_obj_as(
2328
+ type_=InternalServerErrorBody, # type: ignore
2329
+ object_=_response.json(),
2330
+ ),
2331
+ ),
2332
+ )
2333
+ _response_json = _response.json()
2334
+ except JSONDecodeError:
2335
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2336
+ except ValidationError as e:
2337
+ raise ParsingError(
2338
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2339
+ )
2340
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2341
+
2342
+ async def list_authors(
2343
+ self, aa_sequence_id: str, *, request_options: typing.Optional[RequestOptions] = None
2344
+ ) -> AsyncHttpResponse[PrincipalUnpaginatedList]:
2345
+ """
2346
+ List Principal items.
2347
+
2348
+ Parameters
2349
+ ----------
2350
+ aa_sequence_id : str
2351
+ ID of the AaSequence.
2352
+
2353
+ request_options : typing.Optional[RequestOptions]
2354
+ Request-specific configuration.
2355
+
2356
+ Returns
2357
+ -------
2358
+ AsyncHttpResponse[PrincipalUnpaginatedList]
2359
+ OK
2360
+ """
2361
+ _response = await self._client_wrapper.httpx_client.request(
2362
+ f"api/v3/aa-sequence/{encode_path_param(aa_sequence_id)}/authors/items",
2363
+ method="GET",
2364
+ request_options=request_options,
2365
+ )
2366
+ try:
2367
+ if 200 <= _response.status_code < 300:
2368
+ _data = typing.cast(
2369
+ PrincipalUnpaginatedList,
2370
+ parse_obj_as(
2371
+ type_=PrincipalUnpaginatedList, # type: ignore
2372
+ object_=_response.json(),
2373
+ ),
2374
+ )
2375
+ return AsyncHttpResponse(response=_response, data=_data)
2376
+ if _response.status_code == 400:
2377
+ raise BadRequestError(
2378
+ headers=dict(_response.headers),
2379
+ body=typing.cast(
2380
+ typing.Any,
2381
+ parse_obj_as(
2382
+ type_=typing.Any, # type: ignore
2383
+ object_=_response.json(),
2384
+ ),
2385
+ ),
2386
+ )
2387
+ if _response.status_code == 403:
2388
+ raise ForbiddenError(
2389
+ headers=dict(_response.headers),
2390
+ body=typing.cast(
2391
+ GeneralError,
2392
+ parse_obj_as(
2393
+ type_=GeneralError, # type: ignore
2394
+ object_=_response.json(),
2395
+ ),
2396
+ ),
2397
+ )
2398
+ if _response.status_code == 404:
2399
+ raise NotFoundError(
2400
+ headers=dict(_response.headers),
2401
+ body=typing.cast(
2402
+ GeneralError,
2403
+ parse_obj_as(
2404
+ type_=GeneralError, # type: ignore
2405
+ object_=_response.json(),
2406
+ ),
2407
+ ),
2408
+ )
2409
+ if _response.status_code == 429:
2410
+ raise TooManyRequestsError(
2411
+ headers=dict(_response.headers),
2412
+ body=typing.cast(
2413
+ GeneralError,
2414
+ parse_obj_as(
2415
+ type_=GeneralError, # type: ignore
2416
+ object_=_response.json(),
2417
+ ),
2418
+ ),
2419
+ )
2420
+ if _response.status_code == 500:
2421
+ raise InternalServerError(
2422
+ headers=dict(_response.headers),
2423
+ body=typing.cast(
2424
+ InternalServerErrorBody,
2425
+ parse_obj_as(
2426
+ type_=InternalServerErrorBody, # type: ignore
2427
+ object_=_response.json(),
2428
+ ),
2429
+ ),
2430
+ )
2431
+ _response_json = _response.json()
2432
+ except JSONDecodeError:
2433
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2434
+ except ValidationError as e:
2435
+ raise ParsingError(
2436
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2437
+ )
2438
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2439
+
2440
+ async def batch_create(
2441
+ self, *, items: typing.Sequence[CreateAaSequenceInput], request_options: typing.Optional[RequestOptions] = None
2442
+ ) -> AsyncHttpResponse[BatchCreateAaSequenceResponse]:
2443
+ """
2444
+ Batch create AaSequence synchronously in one transaction. Maximum 25 items per request.
2445
+
2446
+ Parameters
2447
+ ----------
2448
+ items : typing.Sequence[CreateAaSequenceInput]
2449
+
2450
+ request_options : typing.Optional[RequestOptions]
2451
+ Request-specific configuration.
2452
+
2453
+ Returns
2454
+ -------
2455
+ AsyncHttpResponse[BatchCreateAaSequenceResponse]
2456
+ Created
2457
+ """
2458
+ _response = await self._client_wrapper.httpx_client.request(
2459
+ "api/v3/aa-sequence:batch-create",
2460
+ method="POST",
2461
+ json={
2462
+ "items": convert_and_respect_annotation_metadata(
2463
+ object_=items, annotation=typing.Sequence[CreateAaSequenceInput], direction="write"
2464
+ ),
2465
+ },
2466
+ headers={
2467
+ "content-type": "application/json",
2468
+ },
2469
+ request_options=request_options,
2470
+ omit=OMIT,
2471
+ )
2472
+ try:
2473
+ if 200 <= _response.status_code < 300:
2474
+ _data = typing.cast(
2475
+ BatchCreateAaSequenceResponse,
2476
+ parse_obj_as(
2477
+ type_=BatchCreateAaSequenceResponse, # type: ignore
2478
+ object_=_response.json(),
2479
+ ),
2480
+ )
2481
+ return AsyncHttpResponse(response=_response, data=_data)
2482
+ if _response.status_code == 400:
2483
+ raise BadRequestError(
2484
+ headers=dict(_response.headers),
2485
+ body=typing.cast(
2486
+ typing.Any,
2487
+ parse_obj_as(
2488
+ type_=typing.Any, # type: ignore
2489
+ object_=_response.json(),
2490
+ ),
2491
+ ),
2492
+ )
2493
+ if _response.status_code == 403:
2494
+ raise ForbiddenError(
2495
+ headers=dict(_response.headers),
2496
+ body=typing.cast(
2497
+ GeneralError,
2498
+ parse_obj_as(
2499
+ type_=GeneralError, # type: ignore
2500
+ object_=_response.json(),
2501
+ ),
2502
+ ),
2503
+ )
2504
+ if _response.status_code == 404:
2505
+ raise NotFoundError(
2506
+ headers=dict(_response.headers),
2507
+ body=typing.cast(
2508
+ GeneralError,
2509
+ parse_obj_as(
2510
+ type_=GeneralError, # type: ignore
2511
+ object_=_response.json(),
2512
+ ),
2513
+ ),
2514
+ )
2515
+ if _response.status_code == 429:
2516
+ raise TooManyRequestsError(
2517
+ headers=dict(_response.headers),
2518
+ body=typing.cast(
2519
+ GeneralError,
2520
+ parse_obj_as(
2521
+ type_=GeneralError, # type: ignore
2522
+ object_=_response.json(),
2523
+ ),
2524
+ ),
2525
+ )
2526
+ if _response.status_code == 500:
2527
+ raise InternalServerError(
2528
+ headers=dict(_response.headers),
2529
+ body=typing.cast(
2530
+ InternalServerErrorBody,
2531
+ parse_obj_as(
2532
+ type_=InternalServerErrorBody, # type: ignore
2533
+ object_=_response.json(),
2534
+ ),
2535
+ ),
2536
+ )
2537
+ _response_json = _response.json()
2538
+ except JSONDecodeError:
2539
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2540
+ except ValidationError as e:
2541
+ raise ParsingError(
2542
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2543
+ )
2544
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2545
+
2546
+ async def batch_update(
2547
+ self,
2548
+ *,
2549
+ items: typing.Sequence[UpdateAaSequenceInputWithPathParams],
2550
+ request_options: typing.Optional[RequestOptions] = None,
2551
+ ) -> AsyncHttpResponse[BatchUpdateAaSequenceResponse]:
2552
+ """
2553
+ Batch update AaSequence synchronously in one transaction. Maximum 25 items per request.
2554
+
2555
+ Parameters
2556
+ ----------
2557
+ items : typing.Sequence[UpdateAaSequenceInputWithPathParams]
2558
+
2559
+ request_options : typing.Optional[RequestOptions]
2560
+ Request-specific configuration.
2561
+
2562
+ Returns
2563
+ -------
2564
+ AsyncHttpResponse[BatchUpdateAaSequenceResponse]
2565
+ OK
2566
+ """
2567
+ _response = await self._client_wrapper.httpx_client.request(
2568
+ "api/v3/aa-sequence:batch-update",
2569
+ method="PATCH",
2570
+ json={
2571
+ "items": convert_and_respect_annotation_metadata(
2572
+ object_=items, annotation=typing.Sequence[UpdateAaSequenceInputWithPathParams], direction="write"
2573
+ ),
2574
+ },
2575
+ headers={
2576
+ "content-type": "application/json",
2577
+ },
2578
+ request_options=request_options,
2579
+ omit=OMIT,
2580
+ )
2581
+ try:
2582
+ if 200 <= _response.status_code < 300:
2583
+ _data = typing.cast(
2584
+ BatchUpdateAaSequenceResponse,
2585
+ parse_obj_as(
2586
+ type_=BatchUpdateAaSequenceResponse, # type: ignore
2587
+ object_=_response.json(),
2588
+ ),
2589
+ )
2590
+ return AsyncHttpResponse(response=_response, data=_data)
2591
+ if _response.status_code == 400:
2592
+ raise BadRequestError(
2593
+ headers=dict(_response.headers),
2594
+ body=typing.cast(
2595
+ typing.Any,
2596
+ parse_obj_as(
2597
+ type_=typing.Any, # type: ignore
2598
+ object_=_response.json(),
2599
+ ),
2600
+ ),
2601
+ )
2602
+ if _response.status_code == 403:
2603
+ raise ForbiddenError(
2604
+ headers=dict(_response.headers),
2605
+ body=typing.cast(
2606
+ GeneralError,
2607
+ parse_obj_as(
2608
+ type_=GeneralError, # type: ignore
2609
+ object_=_response.json(),
2610
+ ),
2611
+ ),
2612
+ )
2613
+ if _response.status_code == 404:
2614
+ raise NotFoundError(
2615
+ headers=dict(_response.headers),
2616
+ body=typing.cast(
2617
+ GeneralError,
2618
+ parse_obj_as(
2619
+ type_=GeneralError, # type: ignore
2620
+ object_=_response.json(),
2621
+ ),
2622
+ ),
2623
+ )
2624
+ if _response.status_code == 429:
2625
+ raise TooManyRequestsError(
2626
+ headers=dict(_response.headers),
2627
+ body=typing.cast(
2628
+ GeneralError,
2629
+ parse_obj_as(
2630
+ type_=GeneralError, # type: ignore
2631
+ object_=_response.json(),
2632
+ ),
2633
+ ),
2634
+ )
2635
+ if _response.status_code == 500:
2636
+ raise InternalServerError(
2637
+ headers=dict(_response.headers),
2638
+ body=typing.cast(
2639
+ InternalServerErrorBody,
2640
+ parse_obj_as(
2641
+ type_=InternalServerErrorBody, # type: ignore
2642
+ object_=_response.json(),
2643
+ ),
2644
+ ),
2645
+ )
2646
+ _response_json = _response.json()
2647
+ except JSONDecodeError:
2648
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2649
+ except ValidationError as e:
2650
+ raise ParsingError(
2651
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2652
+ )
2653
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2654
+
2655
+ async def bulk_create(
2656
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
2657
+ ) -> AsyncHttpResponse[AsyncTaskLink]:
2658
+ """
2659
+ Bulk create AaSequence.
2660
+
2661
+ Parameters
2662
+ ----------
2663
+ file_id : str
2664
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
2665
+
2666
+ request_options : typing.Optional[RequestOptions]
2667
+ Request-specific configuration.
2668
+
2669
+ Returns
2670
+ -------
2671
+ AsyncHttpResponse[AsyncTaskLink]
2672
+ Task started
2673
+ """
2674
+ _response = await self._client_wrapper.httpx_client.request(
2675
+ "api/v3/aa-sequence:bulk-create",
2676
+ method="POST",
2677
+ json={
2678
+ "fileId": file_id,
2679
+ },
2680
+ request_options=request_options,
2681
+ omit=OMIT,
2682
+ )
2683
+ try:
2684
+ if 200 <= _response.status_code < 300:
2685
+ _data = typing.cast(
2686
+ AsyncTaskLink,
2687
+ parse_obj_as(
2688
+ type_=AsyncTaskLink, # type: ignore
2689
+ object_=_response.json(),
2690
+ ),
2691
+ )
2692
+ return AsyncHttpResponse(response=_response, data=_data)
2693
+ if _response.status_code == 400:
2694
+ raise BadRequestError(
2695
+ headers=dict(_response.headers),
2696
+ body=typing.cast(
2697
+ typing.Any,
2698
+ parse_obj_as(
2699
+ type_=typing.Any, # type: ignore
2700
+ object_=_response.json(),
2701
+ ),
2702
+ ),
2703
+ )
2704
+ if _response.status_code == 403:
2705
+ raise ForbiddenError(
2706
+ headers=dict(_response.headers),
2707
+ body=typing.cast(
2708
+ GeneralError,
2709
+ parse_obj_as(
2710
+ type_=GeneralError, # type: ignore
2711
+ object_=_response.json(),
2712
+ ),
2713
+ ),
2714
+ )
2715
+ if _response.status_code == 404:
2716
+ raise NotFoundError(
2717
+ headers=dict(_response.headers),
2718
+ body=typing.cast(
2719
+ GeneralError,
2720
+ parse_obj_as(
2721
+ type_=GeneralError, # type: ignore
2722
+ object_=_response.json(),
2723
+ ),
2724
+ ),
2725
+ )
2726
+ if _response.status_code == 429:
2727
+ raise TooManyRequestsError(
2728
+ headers=dict(_response.headers),
2729
+ body=typing.cast(
2730
+ GeneralError,
2731
+ parse_obj_as(
2732
+ type_=GeneralError, # type: ignore
2733
+ object_=_response.json(),
2734
+ ),
2735
+ ),
2736
+ )
2737
+ if _response.status_code == 500:
2738
+ raise InternalServerError(
2739
+ headers=dict(_response.headers),
2740
+ body=typing.cast(
2741
+ InternalServerErrorBody,
2742
+ parse_obj_as(
2743
+ type_=InternalServerErrorBody, # type: ignore
2744
+ object_=_response.json(),
2745
+ ),
2746
+ ),
2747
+ )
2748
+ _response_json = _response.json()
2749
+ except JSONDecodeError:
2750
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2751
+ except ValidationError as e:
2752
+ raise ParsingError(
2753
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2754
+ )
2755
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2756
+
2757
+ async def bulk_update(
2758
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
2759
+ ) -> AsyncHttpResponse[AsyncTaskLink]:
2760
+ """
2761
+ Bulk update AaSequence.
2762
+
2763
+ Parameters
2764
+ ----------
2765
+ file_id : str
2766
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
2767
+
2768
+ request_options : typing.Optional[RequestOptions]
2769
+ Request-specific configuration.
2770
+
2771
+ Returns
2772
+ -------
2773
+ AsyncHttpResponse[AsyncTaskLink]
2774
+ Task started
2775
+ """
2776
+ _response = await self._client_wrapper.httpx_client.request(
2777
+ "api/v3/aa-sequence:bulk-update",
2778
+ method="PATCH",
2779
+ json={
2780
+ "fileId": file_id,
2781
+ },
2782
+ request_options=request_options,
2783
+ omit=OMIT,
2784
+ )
2785
+ try:
2786
+ if 200 <= _response.status_code < 300:
2787
+ _data = typing.cast(
2788
+ AsyncTaskLink,
2789
+ parse_obj_as(
2790
+ type_=AsyncTaskLink, # type: ignore
2791
+ object_=_response.json(),
2792
+ ),
2793
+ )
2794
+ return AsyncHttpResponse(response=_response, data=_data)
2795
+ if _response.status_code == 400:
2796
+ raise BadRequestError(
2797
+ headers=dict(_response.headers),
2798
+ body=typing.cast(
2799
+ typing.Any,
2800
+ parse_obj_as(
2801
+ type_=typing.Any, # type: ignore
2802
+ object_=_response.json(),
2803
+ ),
2804
+ ),
2805
+ )
2806
+ if _response.status_code == 403:
2807
+ raise ForbiddenError(
2808
+ headers=dict(_response.headers),
2809
+ body=typing.cast(
2810
+ GeneralError,
2811
+ parse_obj_as(
2812
+ type_=GeneralError, # type: ignore
2813
+ object_=_response.json(),
2814
+ ),
2815
+ ),
2816
+ )
2817
+ if _response.status_code == 404:
2818
+ raise NotFoundError(
2819
+ headers=dict(_response.headers),
2820
+ body=typing.cast(
2821
+ GeneralError,
2822
+ parse_obj_as(
2823
+ type_=GeneralError, # type: ignore
2824
+ object_=_response.json(),
2825
+ ),
2826
+ ),
2827
+ )
2828
+ if _response.status_code == 429:
2829
+ raise TooManyRequestsError(
2830
+ headers=dict(_response.headers),
2831
+ body=typing.cast(
2832
+ GeneralError,
2833
+ parse_obj_as(
2834
+ type_=GeneralError, # type: ignore
2835
+ object_=_response.json(),
2836
+ ),
2837
+ ),
2838
+ )
2839
+ if _response.status_code == 500:
2840
+ raise InternalServerError(
2841
+ headers=dict(_response.headers),
2842
+ body=typing.cast(
2843
+ InternalServerErrorBody,
2844
+ parse_obj_as(
2845
+ type_=InternalServerErrorBody, # type: ignore
2846
+ object_=_response.json(),
2847
+ ),
2848
+ ),
2849
+ )
2850
+ _response_json = _response.json()
2851
+ except JSONDecodeError:
2852
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2853
+ except ValidationError as e:
2854
+ raise ParsingError(
2855
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2856
+ )
2857
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)