benchling-v3-sdk-python 5.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2930) hide show
  1. benchling_v3_sdk/__init__.py +9254 -0
  2. benchling_v3_sdk/_async_tasks/__init__.py +22 -0
  3. benchling_v3_sdk/_async_tasks/adapters/__init__.py +17 -0
  4. benchling_v3_sdk/_async_tasks/adapters/base.py +100 -0
  5. benchling_v3_sdk/_async_tasks/adapters/binding.py +73 -0
  6. benchling_v3_sdk/_async_tasks/adapters/bulk.py +62 -0
  7. benchling_v3_sdk/_async_tasks/adapters/operation_scoped.py +54 -0
  8. benchling_v3_sdk/_async_tasks/client_validation.py +22 -0
  9. benchling_v3_sdk/_async_tasks/completion.py +23 -0
  10. benchling_v3_sdk/_async_tasks/constants.py +41 -0
  11. benchling_v3_sdk/_async_tasks/engine.py +122 -0
  12. benchling_v3_sdk/_async_tasks/errors.py +140 -0
  13. benchling_v3_sdk/_async_tasks/link_validation.py +60 -0
  14. benchling_v3_sdk/_async_tasks/path_parser.py +120 -0
  15. benchling_v3_sdk/_async_tasks/presigned_file_streaming.py +36 -0
  16. benchling_v3_sdk/_async_tasks/registry.py +68 -0
  17. benchling_v3_sdk/_async_tasks/wait.py +122 -0
  18. benchling_v3_sdk/_default_clients.py +32 -0
  19. benchling_v3_sdk/aa_monomer/__init__.py +38 -0
  20. benchling_v3_sdk/aa_monomer/client.py +1030 -0
  21. benchling_v3_sdk/aa_monomer/raw_client.py +2074 -0
  22. benchling_v3_sdk/aa_monomer/types/__init__.py +40 -0
  23. benchling_v3_sdk/aa_monomer/types/batch_create_aa_monomer_response.py +20 -0
  24. benchling_v3_sdk/aa_monomer/types/batch_update_aa_monomer_response.py +20 -0
  25. benchling_v3_sdk/aa_monomer/types/list_aa_monomer_request_sort.py +7 -0
  26. benchling_v3_sdk/aa_sequence/__init__.py +49 -0
  27. benchling_v3_sdk/aa_sequence/client.py +1661 -0
  28. benchling_v3_sdk/aa_sequence/raw_client.py +2857 -0
  29. benchling_v3_sdk/aa_sequence/types/__init__.py +47 -0
  30. benchling_v3_sdk/aa_sequence/types/batch_create_aa_sequence_response.py +20 -0
  31. benchling_v3_sdk/aa_sequence/types/batch_update_aa_sequence_response.py +20 -0
  32. benchling_v3_sdk/aa_sequence/types/list_aa_sequence_request_sort.py +7 -0
  33. benchling_v3_sdk/aa_sequence/types/update_aa_sequence_input_naming_strategy.py +16 -0
  34. benchling_v3_sdk/aa_sequence_schema/__init__.py +67 -0
  35. benchling_v3_sdk/aa_sequence_schema/client.py +1930 -0
  36. benchling_v3_sdk/aa_sequence_schema/raw_client.py +3878 -0
  37. benchling_v3_sdk/aa_sequence_schema/types/__init__.py +75 -0
  38. benchling_v3_sdk/aa_sequence_schema/types/aa_sequence_schema_set_field_definitions_input_field_definitions_item.py +127 -0
  39. benchling_v3_sdk/aa_sequence_schema/types/batch_create_aa_sequence_schema_response.py +20 -0
  40. benchling_v3_sdk/aa_sequence_schema/types/batch_update_aa_sequence_schema_response.py +20 -0
  41. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_apply_fieldset_aa_sequence_schema_response.py +25 -0
  42. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_apply_fieldset_aa_sequence_schema_response_status.py +7 -0
  43. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_set_field_definitions_aa_sequence_schema_response.py +25 -0
  44. benchling_v3_sdk/aa_sequence_schema/types/get_task_for_set_field_definitions_aa_sequence_schema_response_status.py +7 -0
  45. benchling_v3_sdk/aa_sequence_schema/types/list_aa_sequence_schema_request_sort.py +7 -0
  46. benchling_v3_sdk/aa_sequence_schema/types/update_aa_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  47. benchling_v3_sdk/aa_sequence_schema/types/update_aa_sequence_schema_input_icon_id.py +7 -0
  48. benchling_v3_sdk/agent/__init__.py +64 -0
  49. benchling_v3_sdk/agent/client.py +271 -0
  50. benchling_v3_sdk/agent/raw_client.py +540 -0
  51. benchling_v3_sdk/agent/types/__init__.py +62 -0
  52. benchling_v3_sdk/agent/types/create_agent_input_agent.py +5 -0
  53. benchling_v3_sdk/agent/types/create_agent_response.py +26 -0
  54. benchling_v3_sdk/agent/types/get_task_agent_response.py +45 -0
  55. benchling_v3_sdk/agent/types/get_task_agent_response_agent.py +7 -0
  56. benchling_v3_sdk/agent/types/get_task_agent_response_artifacts_item.py +38 -0
  57. benchling_v3_sdk/agent/types/get_task_agent_response_artifacts_item_type.py +5 -0
  58. benchling_v3_sdk/agent/types/get_task_agent_response_content_item.py +25 -0
  59. benchling_v3_sdk/agent/types/get_task_agent_response_content_item_content_type.py +5 -0
  60. benchling_v3_sdk/agent/types/get_task_agent_response_status.py +5 -0
  61. benchling_v3_sdk/analysis/__init__.py +34 -0
  62. benchling_v3_sdk/analysis/client.py +483 -0
  63. benchling_v3_sdk/analysis/raw_client.py +902 -0
  64. benchling_v3_sdk/analysis/types/__init__.py +34 -0
  65. benchling_v3_sdk/analysis/types/list_analysis_request_sort.py +7 -0
  66. benchling_v3_sdk/app_canvas/__init__.py +37 -0
  67. benchling_v3_sdk/app_canvas/client.py +795 -0
  68. benchling_v3_sdk/app_canvas/raw_client.py +1653 -0
  69. benchling_v3_sdk/app_canvas/types/__init__.py +38 -0
  70. benchling_v3_sdk/app_canvas/types/batch_create_app_canvas_response.py +20 -0
  71. benchling_v3_sdk/app_canvas/types/batch_update_app_canvas_response.py +20 -0
  72. benchling_v3_sdk/app_config_value/__init__.py +34 -0
  73. benchling_v3_sdk/app_config_value/client.py +368 -0
  74. benchling_v3_sdk/app_config_value/raw_client.py +641 -0
  75. benchling_v3_sdk/app_config_value/types/__init__.py +34 -0
  76. benchling_v3_sdk/app_config_value/types/list_app_config_value_request_sort.py +7 -0
  77. benchling_v3_sdk/app_installation/__init__.py +34 -0
  78. benchling_v3_sdk/app_installation/client.py +497 -0
  79. benchling_v3_sdk/app_installation/raw_client.py +918 -0
  80. benchling_v3_sdk/app_installation/types/__init__.py +34 -0
  81. benchling_v3_sdk/app_installation/types/list_app_installation_request_sort.py +7 -0
  82. benchling_v3_sdk/app_session/__init__.py +49 -0
  83. benchling_v3_sdk/app_session/client.py +940 -0
  84. benchling_v3_sdk/app_session/raw_client.py +1982 -0
  85. benchling_v3_sdk/app_session/types/__init__.py +47 -0
  86. benchling_v3_sdk/app_session/types/batch_create_app_session_response.py +20 -0
  87. benchling_v3_sdk/app_session/types/batch_update_app_session_response.py +20 -0
  88. benchling_v3_sdk/app_session/types/list_app_session_request_sort.py +7 -0
  89. benchling_v3_sdk/app_session/types/update_app_session_input_status.py +5 -0
  90. benchling_v3_sdk/apps/__init__.py +5 -0
  91. benchling_v3_sdk/apps/helpers/__init__.py +1 -0
  92. benchling_v3_sdk/apps/helpers/webhook_helpers.py +229 -0
  93. benchling_v3_sdk/apps/helpers/webhook_verification.py +301 -0
  94. benchling_v3_sdk/assembly/__init__.py +34 -0
  95. benchling_v3_sdk/assembly/client.py +406 -0
  96. benchling_v3_sdk/assembly/raw_client.py +705 -0
  97. benchling_v3_sdk/assembly/types/__init__.py +34 -0
  98. benchling_v3_sdk/assembly/types/list_assembly_request_sort.py +7 -0
  99. benchling_v3_sdk/attachment/__init__.py +34 -0
  100. benchling_v3_sdk/attachment/client.py +410 -0
  101. benchling_v3_sdk/attachment/raw_client.py +910 -0
  102. benchling_v3_sdk/attachment/types/__init__.py +34 -0
  103. benchling_v3_sdk/attachment/types/batch_create_attachment_response.py +20 -0
  104. benchling_v3_sdk/audit_log/__init__.py +49 -0
  105. benchling_v3_sdk/audit_log/client.py +540 -0
  106. benchling_v3_sdk/audit_log/raw_client.py +1085 -0
  107. benchling_v3_sdk/audit_log/types/__init__.py +47 -0
  108. benchling_v3_sdk/audit_log/types/audit_log_export_input_format.py +5 -0
  109. benchling_v3_sdk/audit_log/types/get_task_for_export_audit_log_response.py +23 -0
  110. benchling_v3_sdk/audit_log/types/get_task_for_export_audit_log_response_status.py +7 -0
  111. benchling_v3_sdk/audit_log/types/list_audit_log_request_sort.py +5 -0
  112. benchling_v3_sdk/automation_template/__init__.py +34 -0
  113. benchling_v3_sdk/automation_template/client.py +655 -0
  114. benchling_v3_sdk/automation_template/raw_client.py +1314 -0
  115. benchling_v3_sdk/automation_template/types/__init__.py +36 -0
  116. benchling_v3_sdk/automation_template/types/list_automation_template_request_sort.py +7 -0
  117. benchling_v3_sdk/automation_template_data_frame_variable/__init__.py +34 -0
  118. benchling_v3_sdk/automation_template_data_frame_variable/client.py +392 -0
  119. benchling_v3_sdk/automation_template_data_frame_variable/raw_client.py +677 -0
  120. benchling_v3_sdk/automation_template_data_frame_variable/types/__init__.py +38 -0
  121. benchling_v3_sdk/automation_template_data_frame_variable/types/list_automation_template_data_frame_variable_request_sort.py +7 -0
  122. benchling_v3_sdk/automation_template_variable/__init__.py +34 -0
  123. benchling_v3_sdk/automation_template_variable/client.py +388 -0
  124. benchling_v3_sdk/automation_template_variable/raw_client.py +673 -0
  125. benchling_v3_sdk/automation_template_variable/types/__init__.py +36 -0
  126. benchling_v3_sdk/automation_template_variable/types/list_automation_template_variable_request_sort.py +7 -0
  127. benchling_v3_sdk/base_client.py +3479 -0
  128. benchling_v3_sdk/benchling_logging.py +62 -0
  129. benchling_v3_sdk/box/__init__.py +38 -0
  130. benchling_v3_sdk/box/client.py +1061 -0
  131. benchling_v3_sdk/box/raw_client.py +2167 -0
  132. benchling_v3_sdk/box/types/__init__.py +40 -0
  133. benchling_v3_sdk/box/types/batch_create_box_response.py +20 -0
  134. benchling_v3_sdk/box/types/batch_update_box_response.py +20 -0
  135. benchling_v3_sdk/box/types/list_box_request_sort.py +7 -0
  136. benchling_v3_sdk/box_schema/__init__.py +38 -0
  137. benchling_v3_sdk/box_schema/client.py +1186 -0
  138. benchling_v3_sdk/box_schema/raw_client.py +2366 -0
  139. benchling_v3_sdk/box_schema/types/__init__.py +40 -0
  140. benchling_v3_sdk/box_schema/types/batch_create_box_schema_response.py +20 -0
  141. benchling_v3_sdk/box_schema/types/batch_update_box_schema_response.py +20 -0
  142. benchling_v3_sdk/box_schema/types/list_box_schema_request_sort.py +7 -0
  143. benchling_v3_sdk/bulk_export/__init__.py +55 -0
  144. benchling_v3_sdk/bulk_export/client.py +289 -0
  145. benchling_v3_sdk/bulk_export/raw_client.py +644 -0
  146. benchling_v3_sdk/bulk_export/types/__init__.py +55 -0
  147. benchling_v3_sdk/bulk_export/types/create_bulk_export_response.py +26 -0
  148. benchling_v3_sdk/bulk_export/types/get_successful_results_bulk_export_response.py +26 -0
  149. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response.py +29 -0
  150. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response_status.py +5 -0
  151. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response_status_by_model_value.py +30 -0
  152. benchling_v3_sdk/bulk_export/types/get_task_bulk_export_response_status_by_model_value_status.py +7 -0
  153. benchling_v3_sdk/bulk_task/__init__.py +55 -0
  154. benchling_v3_sdk/bulk_task/client.py +272 -0
  155. benchling_v3_sdk/bulk_task/raw_client.py +625 -0
  156. benchling_v3_sdk/bulk_task/types/__init__.py +53 -0
  157. benchling_v3_sdk/bulk_task/types/get_bulk_task_response.py +27 -0
  158. benchling_v3_sdk/bulk_task/types/get_bulk_task_response_progress.py +26 -0
  159. benchling_v3_sdk/bulk_task/types/get_bulk_task_response_result.py +24 -0
  160. benchling_v3_sdk/bulk_task/types/get_bulk_task_response_status.py +7 -0
  161. benchling_v3_sdk/bulk_task/types/get_errors_bulk_task_response.py +31 -0
  162. benchling_v3_sdk/bulk_task/types/get_successful_results_bulk_task_response.py +38 -0
  163. benchling_v3_sdk/chart/__init__.py +38 -0
  164. benchling_v3_sdk/chart/client.py +1043 -0
  165. benchling_v3_sdk/chart/raw_client.py +2113 -0
  166. benchling_v3_sdk/chart/types/__init__.py +40 -0
  167. benchling_v3_sdk/chart/types/batch_create_chart_response.py +20 -0
  168. benchling_v3_sdk/chart/types/batch_update_chart_response.py +20 -0
  169. benchling_v3_sdk/chart/types/list_chart_request_sort.py +7 -0
  170. benchling_v3_sdk/client.py +225 -0
  171. benchling_v3_sdk/collaboration/__init__.py +52 -0
  172. benchling_v3_sdk/collaboration/client.py +1131 -0
  173. benchling_v3_sdk/collaboration/raw_client.py +2407 -0
  174. benchling_v3_sdk/collaboration/types/__init__.py +50 -0
  175. benchling_v3_sdk/collaboration/types/batch_create_collaboration_response.py +20 -0
  176. benchling_v3_sdk/collaboration/types/batch_delete_collaboration_response.py +20 -0
  177. benchling_v3_sdk/collaboration/types/batch_delete_collaboration_response_items_item.py +19 -0
  178. benchling_v3_sdk/collaboration/types/batch_update_collaboration_response.py +20 -0
  179. benchling_v3_sdk/collaboration/types/list_collaboration_request_sort.py +7 -0
  180. benchling_v3_sdk/config_import_history_entry/__init__.py +34 -0
  181. benchling_v3_sdk/config_import_history_entry/client.py +328 -0
  182. benchling_v3_sdk/config_import_history_entry/raw_client.py +593 -0
  183. benchling_v3_sdk/config_import_history_entry/types/__init__.py +36 -0
  184. benchling_v3_sdk/config_import_history_entry/types/list_config_import_history_entry_request_sort.py +5 -0
  185. benchling_v3_sdk/container/__init__.py +55 -0
  186. benchling_v3_sdk/container/client.py +1502 -0
  187. benchling_v3_sdk/container/raw_client.py +3116 -0
  188. benchling_v3_sdk/container/types/__init__.py +53 -0
  189. benchling_v3_sdk/container/types/batch_create_container_response.py +20 -0
  190. benchling_v3_sdk/container/types/batch_update_container_response.py +20 -0
  191. benchling_v3_sdk/container/types/get_task_for_transfer_container_response.py +23 -0
  192. benchling_v3_sdk/container/types/get_task_for_transfer_container_response_status.py +7 -0
  193. benchling_v3_sdk/container/types/list_container_request_sort.py +7 -0
  194. benchling_v3_sdk/container/types/update_container_input_restriction_status.py +7 -0
  195. benchling_v3_sdk/container_schema/__init__.py +42 -0
  196. benchling_v3_sdk/container_schema/client.py +1129 -0
  197. benchling_v3_sdk/container_schema/raw_client.py +2316 -0
  198. benchling_v3_sdk/container_schema/types/__init__.py +40 -0
  199. benchling_v3_sdk/container_schema/types/batch_create_container_schema_response.py +20 -0
  200. benchling_v3_sdk/container_schema/types/batch_update_container_schema_response.py +20 -0
  201. benchling_v3_sdk/container_schema/types/list_container_schema_request_sort.py +7 -0
  202. benchling_v3_sdk/core/__init__.py +132 -0
  203. benchling_v3_sdk/core/api_error.py +23 -0
  204. benchling_v3_sdk/core/client_wrapper.py +172 -0
  205. benchling_v3_sdk/core/datetime_utils.py +70 -0
  206. benchling_v3_sdk/core/file.py +67 -0
  207. benchling_v3_sdk/core/force_multipart.py +18 -0
  208. benchling_v3_sdk/core/http_client.py +940 -0
  209. benchling_v3_sdk/core/http_response.py +63 -0
  210. benchling_v3_sdk/core/http_sse/__init__.py +42 -0
  211. benchling_v3_sdk/core/http_sse/_api.py +455 -0
  212. benchling_v3_sdk/core/http_sse/_decoders.py +74 -0
  213. benchling_v3_sdk/core/http_sse/_exceptions.py +7 -0
  214. benchling_v3_sdk/core/http_sse/_models.py +17 -0
  215. benchling_v3_sdk/core/jsonable_encoder.py +133 -0
  216. benchling_v3_sdk/core/logging.py +107 -0
  217. benchling_v3_sdk/core/oauth_token_provider.py +77 -0
  218. benchling_v3_sdk/core/pagination.py +82 -0
  219. benchling_v3_sdk/core/parse_error.py +36 -0
  220. benchling_v3_sdk/core/pydantic_utilities.py +486 -0
  221. benchling_v3_sdk/core/query_encoder.py +58 -0
  222. benchling_v3_sdk/core/remove_none_from_dict.py +11 -0
  223. benchling_v3_sdk/core/request_options.py +40 -0
  224. benchling_v3_sdk/core/serialization.py +347 -0
  225. benchling_v3_sdk/custom_entity/__init__.py +49 -0
  226. benchling_v3_sdk/custom_entity/client.py +1301 -0
  227. benchling_v3_sdk/custom_entity/raw_client.py +2542 -0
  228. benchling_v3_sdk/custom_entity/types/__init__.py +47 -0
  229. benchling_v3_sdk/custom_entity/types/batch_create_custom_entity_response.py +20 -0
  230. benchling_v3_sdk/custom_entity/types/batch_update_custom_entity_response.py +20 -0
  231. benchling_v3_sdk/custom_entity/types/list_custom_entity_request_sort.py +7 -0
  232. benchling_v3_sdk/custom_entity/types/update_custom_entity_input_naming_strategy.py +16 -0
  233. benchling_v3_sdk/custom_entity_schema/__init__.py +67 -0
  234. benchling_v3_sdk/custom_entity_schema/client.py +1858 -0
  235. benchling_v3_sdk/custom_entity_schema/raw_client.py +3806 -0
  236. benchling_v3_sdk/custom_entity_schema/types/__init__.py +77 -0
  237. benchling_v3_sdk/custom_entity_schema/types/batch_create_custom_entity_schema_response.py +20 -0
  238. benchling_v3_sdk/custom_entity_schema/types/batch_update_custom_entity_schema_response.py +20 -0
  239. benchling_v3_sdk/custom_entity_schema/types/custom_entity_schema_set_field_definitions_input_field_definitions_item.py +123 -0
  240. benchling_v3_sdk/custom_entity_schema/types/get_task_for_apply_fieldset_custom_entity_schema_response.py +25 -0
  241. benchling_v3_sdk/custom_entity_schema/types/get_task_for_apply_fieldset_custom_entity_schema_response_status.py +7 -0
  242. benchling_v3_sdk/custom_entity_schema/types/get_task_for_set_field_definitions_custom_entity_schema_response.py +25 -0
  243. benchling_v3_sdk/custom_entity_schema/types/get_task_for_set_field_definitions_custom_entity_schema_response_status.py +7 -0
  244. benchling_v3_sdk/custom_entity_schema/types/list_custom_entity_schema_request_sort.py +7 -0
  245. benchling_v3_sdk/custom_entity_schema/types/update_custom_entity_schema_input_available_registration_naming_options_item.py +16 -0
  246. benchling_v3_sdk/custom_entity_schema/types/update_custom_entity_schema_input_icon_id.py +87 -0
  247. benchling_v3_sdk/data_frame/__init__.py +34 -0
  248. benchling_v3_sdk/data_frame/client.py +460 -0
  249. benchling_v3_sdk/data_frame/raw_client.py +753 -0
  250. benchling_v3_sdk/data_frame/types/__init__.py +34 -0
  251. benchling_v3_sdk/data_frame/types/list_data_frame_request_sort.py +7 -0
  252. benchling_v3_sdk/dataset/__init__.py +34 -0
  253. benchling_v3_sdk/dataset/client.py +436 -0
  254. benchling_v3_sdk/dataset/raw_client.py +749 -0
  255. benchling_v3_sdk/dataset/types/__init__.py +34 -0
  256. benchling_v3_sdk/dataset/types/list_dataset_request_sort.py +7 -0
  257. benchling_v3_sdk/dna_oligo/__init__.py +49 -0
  258. benchling_v3_sdk/dna_oligo/client.py +1815 -0
  259. benchling_v3_sdk/dna_oligo/raw_client.py +3217 -0
  260. benchling_v3_sdk/dna_oligo/types/__init__.py +47 -0
  261. benchling_v3_sdk/dna_oligo/types/batch_create_dna_oligo_response.py +20 -0
  262. benchling_v3_sdk/dna_oligo/types/batch_update_dna_oligo_response.py +20 -0
  263. benchling_v3_sdk/dna_oligo/types/list_dna_oligo_request_sort.py +7 -0
  264. benchling_v3_sdk/dna_oligo/types/update_dna_oligo_input_naming_strategy.py +16 -0
  265. benchling_v3_sdk/dna_oligo_schema/__init__.py +67 -0
  266. benchling_v3_sdk/dna_oligo_schema/client.py +1873 -0
  267. benchling_v3_sdk/dna_oligo_schema/raw_client.py +3826 -0
  268. benchling_v3_sdk/dna_oligo_schema/types/__init__.py +75 -0
  269. benchling_v3_sdk/dna_oligo_schema/types/batch_create_dna_oligo_schema_response.py +20 -0
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  1247. benchling_v3_sdk/types/automation_input_file_row_config.py +50 -0
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  1249. benchling_v3_sdk/types/automation_output_file_config.py +210 -0
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  1251. benchling_v3_sdk/types/automation_output_file_config_unpaginated_list.py +20 -0
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  1253. benchling_v3_sdk/types/automation_output_file_entity_schema_info_action_type.py +7 -0
  1254. benchling_v3_sdk/types/automation_output_file_entity_schema_info_naming_strategy.py +16 -0
  1255. benchling_v3_sdk/types/automation_output_file_inventory_schema_info.py +58 -0
  1256. benchling_v3_sdk/types/automation_output_file_named_column_type.py +42 -0
  1257. benchling_v3_sdk/types/automation_output_file_result_schema_info.py +46 -0
  1258. benchling_v3_sdk/types/automation_output_file_transformation_field_info.py +77 -0
  1259. benchling_v3_sdk/types/automation_output_file_transformation_field_info_type.py +7 -0
  1260. benchling_v3_sdk/types/automation_template.py +69 -0
  1261. benchling_v3_sdk/types/automation_template_data_frame_variable.py +67 -0
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  1269. benchling_v3_sdk/types/automation_transform_config.py +35 -0
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  1272. benchling_v3_sdk/types/base_create_message_block_input.py +42 -0
  1273. benchling_v3_sdk/types/base_create_message_block_input_type.py +5 -0
  1274. benchling_v3_sdk/types/base_field_definition.py +67 -0
  1275. benchling_v3_sdk/types/base_field_definition_derivation_type.py +5 -0
  1276. benchling_v3_sdk/types/base_field_definition_type.py +39 -0
  1277. benchling_v3_sdk/types/base_system_category_configuration.py +31 -0
  1278. benchling_v3_sdk/types/benchling_item_content_input.py +40 -0
  1279. benchling_v3_sdk/types/benchling_item_content_input_content_type.py +5 -0
  1280. benchling_v3_sdk/types/benchling_item_document_content.py +44 -0
  1281. benchling_v3_sdk/types/blob_link_cell_evaluation_value.py +36 -0
  1282. benchling_v3_sdk/types/blob_link_field_definition.py +55 -0
  1283. benchling_v3_sdk/types/blob_link_field_definition_derivation_type.py +5 -0
  1284. benchling_v3_sdk/types/boolean_app_config_spec.py +30 -0
  1285. benchling_v3_sdk/types/boolean_app_config_value.py +28 -0
  1286. benchling_v3_sdk/types/boolean_cell_evaluation_value.py +31 -0
  1287. benchling_v3_sdk/types/boolean_field_definition.py +52 -0
  1288. benchling_v3_sdk/types/boolean_field_definition_derivation_type.py +5 -0
  1289. benchling_v3_sdk/types/boolean_value.py +31 -0
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  1292. benchling_v3_sdk/types/box_schema.py +77 -0
  1293. benchling_v3_sdk/types/box_schema_paginated_list.py +25 -0
  1294. benchling_v3_sdk/types/box_schema_ref.py +24 -0
  1295. benchling_v3_sdk/types/bulk_import.py +31 -0
  1296. benchling_v3_sdk/types/bulk_molecule_with_parent_input.py +80 -0
  1297. benchling_v3_sdk/types/bulk_molecule_with_parent_input_naming_strategy.py +16 -0
  1298. benchling_v3_sdk/types/button_ui_block.py +30 -0
  1299. benchling_v3_sdk/types/button_ui_block_input.py +23 -0
  1300. benchling_v3_sdk/types/button_ui_block_input_type.py +5 -0
  1301. benchling_v3_sdk/types/canvas_feature_spec.py +34 -0
  1302. benchling_v3_sdk/types/canvas_feature_spec_locations_item.py +5 -0
  1303. benchling_v3_sdk/types/caption.py +34 -0
  1304. benchling_v3_sdk/types/caption_input.py +40 -0
  1305. benchling_v3_sdk/types/cell_error.py +49 -0
  1306. benchling_v3_sdk/types/cell_error_error_type.py +5 -0
  1307. benchling_v3_sdk/types/chain_linked_schema.py +27 -0
  1308. benchling_v3_sdk/types/chain_linked_schema_input.py +36 -0
  1309. benchling_v3_sdk/types/chart.py +135 -0
  1310. benchling_v3_sdk/types/chart_library.py +5 -0
  1311. benchling_v3_sdk/types/chart_paginated_list.py +25 -0
  1312. benchling_v3_sdk/types/chat_source_input.py +30 -0
  1313. benchling_v3_sdk/types/chat_source_input_type.py +5 -0
  1314. benchling_v3_sdk/types/checkout_record.py +44 -0
  1315. benchling_v3_sdk/types/checkout_record_input.py +26 -0
  1316. benchling_v3_sdk/types/checkout_record_input_status.py +5 -0
  1317. benchling_v3_sdk/types/checkout_record_status.py +5 -0
  1318. benchling_v3_sdk/types/chem_simple_polymer.py +42 -0
  1319. benchling_v3_sdk/types/chemical_structure_input.py +30 -0
  1320. benchling_v3_sdk/types/chemical_structure_input_structure_format.py +5 -0
  1321. benchling_v3_sdk/types/chip_ui_block.py +29 -0
  1322. benchling_v3_sdk/types/chip_ui_block_input.py +22 -0
  1323. benchling_v3_sdk/types/chip_ui_block_input_type.py +5 -0
  1324. benchling_v3_sdk/types/clustal_o_options_input.py +79 -0
  1325. benchling_v3_sdk/types/code_block_content_input.py +28 -0
  1326. benchling_v3_sdk/types/code_block_content_input_content_type.py +5 -0
  1327. benchling_v3_sdk/types/code_block_document_content.py +31 -0
  1328. benchling_v3_sdk/types/collaboratable_ref.py +24 -0
  1329. benchling_v3_sdk/types/collaboration.py +60 -0
  1330. benchling_v3_sdk/types/collaboration_collaborator_info.py +8 -0
  1331. benchling_v3_sdk/types/collaboration_paginated_list.py +25 -0
  1332. benchling_v3_sdk/types/column_mapping.py +25 -0
  1333. benchling_v3_sdk/types/complex_polymer_connection.py +76 -0
  1334. benchling_v3_sdk/types/complex_polymer_connection_attachment_style.py +5 -0
  1335. benchling_v3_sdk/types/complex_polymer_connection_connection_type.py +5 -0
  1336. benchling_v3_sdk/types/complex_polymer_connection_covalent_bond_type.py +5 -0
  1337. benchling_v3_sdk/types/complex_polymer_resolved_attachment.py +49 -0
  1338. benchling_v3_sdk/types/complex_polymer_structure.py +61 -0
  1339. benchling_v3_sdk/types/complex_polymer_structure_simple_polymers_item.py +11 -0
  1340. benchling_v3_sdk/types/concentration_layer_input.py +31 -0
  1341. benchling_v3_sdk/types/concentration_well_input.py +26 -0
  1342. benchling_v3_sdk/types/condition_order_for_pmdv_input.py +26 -0
  1343. benchling_v3_sdk/types/config_import_history_entry.py +65 -0
  1344. benchling_v3_sdk/types/config_import_history_entry_paginated_list.py +25 -0
  1345. benchling_v3_sdk/types/confirmation_method_by_param_version_id.py +41 -0
  1346. benchling_v3_sdk/types/confirmation_method_by_param_version_id_confirmation_method.py +5 -0
  1347. benchling_v3_sdk/types/confirmation_method_by_param_version_id_input.py +31 -0
  1348. benchling_v3_sdk/types/confirmation_method_by_param_version_id_input_confirmation_method.py +7 -0
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  1350. benchling_v3_sdk/types/connection_side_modification_type.py +5 -0
  1351. benchling_v3_sdk/types/connectors_input.py +23 -0
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  1355. benchling_v3_sdk/types/container_content.py +64 -0
  1356. benchling_v3_sdk/types/container_name_template.py +29 -0
  1357. benchling_v3_sdk/types/container_name_template_input.py +26 -0
  1358. benchling_v3_sdk/types/container_name_template_part.py +35 -0
  1359. benchling_v3_sdk/types/container_name_template_part_configuration.py +10 -0
  1360. benchling_v3_sdk/types/container_name_template_part_input.py +22 -0
  1361. benchling_v3_sdk/types/container_name_template_part_input_configuration.py +10 -0
  1362. benchling_v3_sdk/types/container_name_template_part_input_type.py +30 -0
  1363. benchling_v3_sdk/types/container_name_template_part_type.py +34 -0
  1364. benchling_v3_sdk/types/container_paginated_list.py +25 -0
  1365. benchling_v3_sdk/types/container_ref.py +24 -0
  1366. benchling_v3_sdk/types/container_schema.py +75 -0
  1367. benchling_v3_sdk/types/container_schema_paginated_list.py +25 -0
  1368. benchling_v3_sdk/types/container_schema_ref.py +24 -0
  1369. benchling_v3_sdk/types/container_unpaginated_list.py +20 -0
  1370. benchling_v3_sdk/types/content_item_input.py +73 -0
  1371. benchling_v3_sdk/types/create_aa_monomer_input.py +56 -0
  1372. benchling_v3_sdk/types/create_aa_monomer_input_natural_analog.py +35 -0
  1373. benchling_v3_sdk/types/create_aa_part_link_field_definition_input.py +45 -0
  1374. benchling_v3_sdk/types/create_aa_part_link_field_definition_input_type.py +5 -0
  1375. benchling_v3_sdk/types/create_aa_sequence_input.py +107 -0
  1376. benchling_v3_sdk/types/create_aa_sequence_input_naming_strategy.py +16 -0
  1377. benchling_v3_sdk/types/create_aa_sequence_link_field_definition_input.py +45 -0
  1378. benchling_v3_sdk/types/create_aa_sequence_link_field_definition_input_type.py +5 -0
  1379. benchling_v3_sdk/types/create_aa_sequence_schema_constraint_input.py +33 -0
  1380. benchling_v3_sdk/types/create_aa_sequence_schema_constraint_input_unique_residues.py +7 -0
  1381. benchling_v3_sdk/types/create_aa_sequence_schema_input.py +149 -0
  1382. benchling_v3_sdk/types/create_aa_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  1383. benchling_v3_sdk/types/create_aa_sequence_schema_input_field_definitions_item.py +761 -0
  1384. benchling_v3_sdk/types/create_aa_sequence_schema_input_icon_id.py +7 -0
  1385. benchling_v3_sdk/types/create_antibody_link_field_definition_input.py +45 -0
  1386. benchling_v3_sdk/types/create_antibody_link_field_definition_input_type.py +5 -0
  1387. benchling_v3_sdk/types/create_any_entity_link_field_definition_input.py +29 -0
  1388. benchling_v3_sdk/types/create_any_entity_link_field_definition_input_type.py +5 -0
  1389. benchling_v3_sdk/types/create_app_canvas_input.py +75 -0
  1390. benchling_v3_sdk/types/create_app_session_input.py +51 -0
  1391. benchling_v3_sdk/types/create_assay_request_link_field_definition_input.py +32 -0
  1392. benchling_v3_sdk/types/create_assay_request_link_field_definition_input_type.py +5 -0
  1393. benchling_v3_sdk/types/create_assay_result_link_field_definition_input.py +32 -0
  1394. benchling_v3_sdk/types/create_assay_result_link_field_definition_input_type.py +5 -0
  1395. benchling_v3_sdk/types/create_assay_run_link_field_definition_input.py +32 -0
  1396. benchling_v3_sdk/types/create_assay_run_link_field_definition_input_type.py +5 -0
  1397. benchling_v3_sdk/types/create_attachment_input.py +52 -0
  1398. benchling_v3_sdk/types/create_base_unit_input.py +21 -0
  1399. benchling_v3_sdk/types/create_blob_link_field_definition_input.py +29 -0
  1400. benchling_v3_sdk/types/create_blob_link_field_definition_input_type.py +5 -0
  1401. benchling_v3_sdk/types/create_boolean_field_definition_input.py +28 -0
  1402. benchling_v3_sdk/types/create_boolean_field_definition_input_type.py +5 -0
  1403. benchling_v3_sdk/types/create_box_input.py +35 -0
  1404. benchling_v3_sdk/types/create_box_schema_input.py +95 -0
  1405. benchling_v3_sdk/types/create_box_schema_input_field_definitions_item.py +611 -0
  1406. benchling_v3_sdk/types/create_chart_input.py +92 -0
  1407. benchling_v3_sdk/types/create_chart_input_library.py +5 -0
  1408. benchling_v3_sdk/types/create_collaboration_input.py +33 -0
  1409. benchling_v3_sdk/types/create_collaboration_input_collaborator.py +8 -0
  1410. benchling_v3_sdk/types/create_complex_polymer_schema_field_spec_input.py +26 -0
  1411. benchling_v3_sdk/types/create_container_input.py +49 -0
  1412. benchling_v3_sdk/types/create_container_input_restriction_status.py +7 -0
  1413. benchling_v3_sdk/types/create_container_schema_input.py +73 -0
  1414. benchling_v3_sdk/types/create_container_schema_input_field_definitions_item.py +611 -0
  1415. benchling_v3_sdk/types/create_custom_entity_input.py +79 -0
  1416. benchling_v3_sdk/types/create_custom_entity_input_naming_strategy.py +16 -0
  1417. benchling_v3_sdk/types/create_custom_entity_link_field_definition_input.py +45 -0
  1418. benchling_v3_sdk/types/create_custom_entity_link_field_definition_input_type.py +5 -0
  1419. benchling_v3_sdk/types/create_custom_entity_schema_input.py +108 -0
  1420. benchling_v3_sdk/types/create_custom_entity_schema_input_available_registration_naming_options_item.py +16 -0
  1421. benchling_v3_sdk/types/create_custom_entity_schema_input_field_definitions_item.py +734 -0
  1422. benchling_v3_sdk/types/create_custom_entity_schema_input_icon_id.py +87 -0
  1423. benchling_v3_sdk/types/create_date_field_definition_input.py +28 -0
  1424. benchling_v3_sdk/types/create_date_field_definition_input_type.py +5 -0
  1425. benchling_v3_sdk/types/create_date_time_field_definition_input.py +28 -0
  1426. benchling_v3_sdk/types/create_date_time_field_definition_input_type.py +5 -0
  1427. benchling_v3_sdk/types/create_dna_oligo_input.py +129 -0
  1428. benchling_v3_sdk/types/create_dna_oligo_input_naming_strategy.py +16 -0
  1429. benchling_v3_sdk/types/create_dna_oligo_link_field_definition_input.py +45 -0
  1430. benchling_v3_sdk/types/create_dna_oligo_link_field_definition_input_type.py +5 -0
  1431. benchling_v3_sdk/types/create_dna_oligo_schema_input.py +115 -0
  1432. benchling_v3_sdk/types/create_dna_oligo_schema_input_available_registration_naming_options_item.py +16 -0
  1433. benchling_v3_sdk/types/create_dna_oligo_schema_input_field_definitions_item.py +734 -0
  1434. benchling_v3_sdk/types/create_dna_oligo_schema_input_icon_id.py +7 -0
  1435. benchling_v3_sdk/types/create_dna_part_link_field_definition_input.py +45 -0
  1436. benchling_v3_sdk/types/create_dna_part_link_field_definition_input_type.py +5 -0
  1437. benchling_v3_sdk/types/create_dna_sequence_input.py +131 -0
  1438. benchling_v3_sdk/types/create_dna_sequence_input_naming_strategy.py +16 -0
  1439. benchling_v3_sdk/types/create_dna_sequence_link_field_definition_input.py +45 -0
  1440. benchling_v3_sdk/types/create_dna_sequence_link_field_definition_input_type.py +5 -0
  1441. benchling_v3_sdk/types/create_dna_sequence_schema_input.py +117 -0
  1442. benchling_v3_sdk/types/create_dna_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  1443. benchling_v3_sdk/types/create_dna_sequence_schema_input_field_definitions_item.py +815 -0
  1444. benchling_v3_sdk/types/create_dna_sequence_schema_input_icon_id.py +8 -0
  1445. benchling_v3_sdk/types/create_dropdown_input.py +32 -0
  1446. benchling_v3_sdk/types/create_dropdown_link_field_definition_input.py +30 -0
  1447. benchling_v3_sdk/types/create_dropdown_link_field_definition_input_type.py +5 -0
  1448. benchling_v3_sdk/types/create_dropdown_option_input.py +19 -0
  1449. benchling_v3_sdk/types/create_entity_schema_constraint_input.py +25 -0
  1450. benchling_v3_sdk/types/create_entry_content_input.py +36 -0
  1451. benchling_v3_sdk/types/create_entry_content_input_content_type.py +7 -0
  1452. benchling_v3_sdk/types/create_entry_input.py +91 -0
  1453. benchling_v3_sdk/types/create_entry_link_field_definition_input.py +29 -0
  1454. benchling_v3_sdk/types/create_entry_link_field_definition_input_type.py +5 -0
  1455. benchling_v3_sdk/types/create_entry_schema_input.py +71 -0
  1456. benchling_v3_sdk/types/create_entry_schema_input_field_definitions_item.py +734 -0
  1457. benchling_v3_sdk/types/create_enzyme_list_input.py +52 -0
  1458. benchling_v3_sdk/types/create_equipment_link_field_definition_input.py +45 -0
  1459. benchling_v3_sdk/types/create_equipment_link_field_definition_input_type.py +5 -0
  1460. benchling_v3_sdk/types/create_equipment_schema_input.py +106 -0
  1461. benchling_v3_sdk/types/create_equipment_schema_input_available_registration_naming_options_item.py +16 -0
  1462. benchling_v3_sdk/types/create_equipment_schema_input_field_definitions_item.py +734 -0
  1463. benchling_v3_sdk/types/create_equipment_schema_input_icon_id.py +7 -0
  1464. benchling_v3_sdk/types/create_feature_library_input.py +40 -0
  1465. benchling_v3_sdk/types/create_feature_library_item_input.py +71 -0
  1466. benchling_v3_sdk/types/create_feature_library_item_input_match_type.py +5 -0
  1467. benchling_v3_sdk/types/create_fieldset_constraint_input.py +36 -0
  1468. benchling_v3_sdk/types/create_fieldset_constraint_input_unique_residues.py +5 -0
  1469. benchling_v3_sdk/types/create_fieldset_input.py +67 -0
  1470. benchling_v3_sdk/types/create_fieldset_input_available_registration_naming_options_item.py +16 -0
  1471. benchling_v3_sdk/types/create_fieldset_input_field_definitions_item.py +734 -0
  1472. benchling_v3_sdk/types/create_fieldset_input_item_type.py +23 -0
  1473. benchling_v3_sdk/types/create_fieldset_link_field_definition_input.py +45 -0
  1474. benchling_v3_sdk/types/create_fieldset_link_field_definition_input_type.py +5 -0
  1475. benchling_v3_sdk/types/create_file_attachment_input.py +28 -0
  1476. benchling_v3_sdk/types/create_file_attachment_input_content_type.py +5 -0
  1477. benchling_v3_sdk/types/create_file_input.py +25 -0
  1478. benchling_v3_sdk/types/create_file_message_block_input.py +41 -0
  1479. benchling_v3_sdk/types/create_file_message_block_input_type.py +5 -0
  1480. benchling_v3_sdk/types/create_float_field_definition_input.py +40 -0
  1481. benchling_v3_sdk/types/create_float_field_definition_input_type.py +5 -0
  1482. benchling_v3_sdk/types/create_folder_input.py +23 -0
  1483. benchling_v3_sdk/types/create_formula_unit_term_input.py +20 -0
  1484. benchling_v3_sdk/types/create_integer_field_definition_input.py +37 -0
  1485. benchling_v3_sdk/types/create_integer_field_definition_input_type.py +5 -0
  1486. benchling_v3_sdk/types/create_json_field_definition_input.py +26 -0
  1487. benchling_v3_sdk/types/create_library_parameter_definition_input.py +66 -0
  1488. benchling_v3_sdk/types/create_library_parameter_definition_input_data_type.py +7 -0
  1489. benchling_v3_sdk/types/create_location_input.py +32 -0
  1490. benchling_v3_sdk/types/create_location_schema_input.py +73 -0
  1491. benchling_v3_sdk/types/create_location_schema_input_field_definitions_item.py +611 -0
  1492. benchling_v3_sdk/types/create_long_text_field_definition_input.py +28 -0
  1493. benchling_v3_sdk/types/create_long_text_field_definition_input_type.py +5 -0
  1494. benchling_v3_sdk/types/create_matrix_plate_input.py +52 -0
  1495. benchling_v3_sdk/types/create_matrix_plate_schema_input.py +99 -0
  1496. benchling_v3_sdk/types/create_matrix_plate_schema_input_field_definitions_item.py +611 -0
  1497. benchling_v3_sdk/types/create_mixture_link_field_definition_input.py +45 -0
  1498. benchling_v3_sdk/types/create_mixture_link_field_definition_input_type.py +5 -0
  1499. benchling_v3_sdk/types/create_mixture_schema_input.py +147 -0
  1500. benchling_v3_sdk/types/create_mixture_schema_input_available_registration_naming_options_item.py +16 -0
  1501. benchling_v3_sdk/types/create_mixture_schema_input_field_definitions_item.py +734 -0
  1502. benchling_v3_sdk/types/create_mixture_schema_input_icon_id.py +8 -0
  1503. benchling_v3_sdk/types/create_molecule_input.py +85 -0
  1504. benchling_v3_sdk/types/create_molecule_input_naming_strategy.py +16 -0
  1505. benchling_v3_sdk/types/create_molecule_link_field_definition_input.py +45 -0
  1506. benchling_v3_sdk/types/create_molecule_link_field_definition_input_type.py +5 -0
  1507. benchling_v3_sdk/types/create_molecule_schema_constraint_input.py +30 -0
  1508. benchling_v3_sdk/types/create_molecule_schema_input.py +106 -0
  1509. benchling_v3_sdk/types/create_molecule_schema_input_available_registration_naming_options_item.py +16 -0
  1510. benchling_v3_sdk/types/create_molecule_schema_input_field_definitions_item.py +734 -0
  1511. benchling_v3_sdk/types/create_molecule_schema_input_icon_id.py +7 -0
  1512. benchling_v3_sdk/types/create_oligo_conjugate_link_field_definition_input.py +45 -0
  1513. benchling_v3_sdk/types/create_oligo_conjugate_link_field_definition_input_type.py +5 -0
  1514. benchling_v3_sdk/types/create_oligo_conjugate_schema_input.py +121 -0
  1515. benchling_v3_sdk/types/create_oligo_conjugate_schema_input_available_registration_naming_options_item.py +16 -0
  1516. benchling_v3_sdk/types/create_oligo_conjugate_schema_input_field_definitions_item.py +734 -0
  1517. benchling_v3_sdk/types/create_oligo_conjugate_schema_input_icon_id.py +19 -0
  1518. benchling_v3_sdk/types/create_oligo_duplex_link_field_definition_input.py +45 -0
  1519. benchling_v3_sdk/types/create_oligo_duplex_link_field_definition_input_type.py +5 -0
  1520. benchling_v3_sdk/types/create_oligo_duplex_schema_input.py +124 -0
  1521. benchling_v3_sdk/types/create_oligo_duplex_schema_input_available_registration_naming_options_item.py +16 -0
  1522. benchling_v3_sdk/types/create_oligo_duplex_schema_input_field_definitions_item.py +734 -0
  1523. benchling_v3_sdk/types/create_oligo_duplex_schema_input_icon_id.py +7 -0
  1524. benchling_v3_sdk/types/create_organization_input.py +20 -0
  1525. benchling_v3_sdk/types/create_plate_design_template_input.py +27 -0
  1526. benchling_v3_sdk/types/create_plate_record_input.py +86 -0
  1527. benchling_v3_sdk/types/create_procedure_run_plan_condition_input.py +71 -0
  1528. benchling_v3_sdk/types/create_procedure_run_plan_input.py +73 -0
  1529. benchling_v3_sdk/types/create_procedure_run_plan_input_data_entry_mode.py +7 -0
  1530. benchling_v3_sdk/types/create_project_input.py +31 -0
  1531. benchling_v3_sdk/types/create_protein_format_input.py +36 -0
  1532. benchling_v3_sdk/types/create_protein_input.py +107 -0
  1533. benchling_v3_sdk/types/create_protein_input_naming_strategy.py +16 -0
  1534. benchling_v3_sdk/types/create_protein_schema_input.py +141 -0
  1535. benchling_v3_sdk/types/create_protein_schema_input_available_registration_naming_options_item.py +16 -0
  1536. benchling_v3_sdk/types/create_protein_schema_input_field_definitions_item.py +734 -0
  1537. benchling_v3_sdk/types/create_registration_table_input.py +27 -0
  1538. benchling_v3_sdk/types/create_registration_table_input_content_type.py +5 -0
  1539. benchling_v3_sdk/types/create_request_v2definition_input.py +58 -0
  1540. benchling_v3_sdk/types/create_result_input.py +29 -0
  1541. benchling_v3_sdk/types/create_result_table_input.py +27 -0
  1542. benchling_v3_sdk/types/create_result_table_input_content_type.py +5 -0
  1543. benchling_v3_sdk/types/create_rna_oligo_input.py +129 -0
  1544. benchling_v3_sdk/types/create_rna_oligo_input_naming_strategy.py +16 -0
  1545. benchling_v3_sdk/types/create_rna_oligo_link_field_definition_input.py +45 -0
  1546. benchling_v3_sdk/types/create_rna_oligo_link_field_definition_input_type.py +5 -0
  1547. benchling_v3_sdk/types/create_rna_oligo_schema_input.py +115 -0
  1548. benchling_v3_sdk/types/create_rna_oligo_schema_input_available_registration_naming_options_item.py +16 -0
  1549. benchling_v3_sdk/types/create_rna_oligo_schema_input_field_definitions_item.py +734 -0
  1550. benchling_v3_sdk/types/create_rna_oligo_schema_input_icon_id.py +7 -0
  1551. benchling_v3_sdk/types/create_rna_part_link_field_definition_input.py +45 -0
  1552. benchling_v3_sdk/types/create_rna_part_link_field_definition_input_type.py +5 -0
  1553. benchling_v3_sdk/types/create_rna_sequence_input.py +148 -0
  1554. benchling_v3_sdk/types/create_rna_sequence_input_naming_strategy.py +16 -0
  1555. benchling_v3_sdk/types/create_rna_sequence_link_field_definition_input.py +45 -0
  1556. benchling_v3_sdk/types/create_rna_sequence_link_field_definition_input_type.py +5 -0
  1557. benchling_v3_sdk/types/create_rna_sequence_schema_input.py +117 -0
  1558. benchling_v3_sdk/types/create_rna_sequence_schema_input_available_registration_naming_options_item.py +16 -0
  1559. benchling_v3_sdk/types/create_rna_sequence_schema_input_field_definitions_item.py +788 -0
  1560. benchling_v3_sdk/types/create_rna_sequence_schema_input_icon_id.py +7 -0
  1561. benchling_v3_sdk/types/create_salt_input.py +32 -0
  1562. benchling_v3_sdk/types/create_scratch_file_input.py +20 -0
  1563. benchling_v3_sdk/types/create_sequence_schema_constraint_input.py +31 -0
  1564. benchling_v3_sdk/types/create_sequence_schema_constraint_input_unique_residues.py +5 -0
  1565. benchling_v3_sdk/types/create_solvent_input.py +32 -0
  1566. benchling_v3_sdk/types/create_storable_link_field_definition_input.py +32 -0
  1567. benchling_v3_sdk/types/create_storable_link_field_definition_input_type.py +5 -0
  1568. benchling_v3_sdk/types/create_study_design_entry_input.py +43 -0
  1569. benchling_v3_sdk/types/create_study_input.py +101 -0
  1570. benchling_v3_sdk/types/create_study_item_association_input.py +22 -0
  1571. benchling_v3_sdk/types/create_study_schema_input.py +121 -0
  1572. benchling_v3_sdk/types/create_study_schema_input_field_definitions_item.py +607 -0
  1573. benchling_v3_sdk/types/create_study_schema_input_id_generation_mode.py +7 -0
  1574. benchling_v3_sdk/types/create_study_schema_input_study_type.py +7 -0
  1575. benchling_v3_sdk/types/create_system_category_link_field_definition_input.py +32 -0
  1576. benchling_v3_sdk/types/create_system_category_link_field_definition_input_type.py +5 -0
  1577. benchling_v3_sdk/types/create_test_definition_input.py +52 -0
  1578. benchling_v3_sdk/types/create_text_field_definition_input.py +28 -0
  1579. benchling_v3_sdk/types/create_text_field_definition_input_type.py +5 -0
  1580. benchling_v3_sdk/types/create_text_input.py +25 -0
  1581. benchling_v3_sdk/types/create_text_input_content_type.py +5 -0
  1582. benchling_v3_sdk/types/create_text_message_block_input.py +21 -0
  1583. benchling_v3_sdk/types/create_text_message_block_input_type.py +5 -0
  1584. benchling_v3_sdk/types/create_transcription_link_field_definition_input.py +45 -0
  1585. benchling_v3_sdk/types/create_transcription_link_field_definition_input_type.py +5 -0
  1586. benchling_v3_sdk/types/create_translation_link_field_definition_input.py +45 -0
  1587. benchling_v3_sdk/types/create_translation_link_field_definition_input_type.py +5 -0
  1588. benchling_v3_sdk/types/create_unit_input.py +33 -0
  1589. benchling_v3_sdk/types/create_unit_type_input.py +53 -0
  1590. benchling_v3_sdk/types/create_unit_type_term_input.py +21 -0
  1591. benchling_v3_sdk/types/create_unit_type_term_input_value.py +7 -0
  1592. benchling_v3_sdk/types/create_user_input.py +26 -0
  1593. benchling_v3_sdk/types/create_warehouse_credential_output.py +40 -0
  1594. benchling_v3_sdk/types/create_well_plate_input.py +47 -0
  1595. benchling_v3_sdk/types/create_well_plate_schema_input.py +99 -0
  1596. benchling_v3_sdk/types/create_well_plate_schema_input_field_definitions_item.py +611 -0
  1597. benchling_v3_sdk/types/create_workflow_output_input.py +41 -0
  1598. benchling_v3_sdk/types/create_workflow_output_schema_input.py +36 -0
  1599. benchling_v3_sdk/types/create_workflow_output_schema_input_field_definitions_item.py +734 -0
  1600. benchling_v3_sdk/types/create_workflow_task_group_input.py +30 -0
  1601. benchling_v3_sdk/types/create_workflow_task_input.py +68 -0
  1602. benchling_v3_sdk/types/create_workflow_task_schema_input.py +188 -0
  1603. benchling_v3_sdk/types/create_workflow_task_schema_input_field_definitions_item.py +734 -0
  1604. benchling_v3_sdk/types/create_worklist_input.py +28 -0
  1605. benchling_v3_sdk/types/create_worklist_input_item_type.py +5 -0
  1606. benchling_v3_sdk/types/custom_entity.py +105 -0
  1607. benchling_v3_sdk/types/custom_entity_created_webhook_envelope_v3.py +25 -0
  1608. benchling_v3_sdk/types/custom_entity_created_webhook_v3.py +64 -0
  1609. benchling_v3_sdk/types/custom_entity_created_webhook_v3type.py +5 -0
  1610. benchling_v3_sdk/types/custom_entity_link_field_definition.py +74 -0
  1611. benchling_v3_sdk/types/custom_entity_link_field_definition_derivation_type.py +7 -0
  1612. benchling_v3_sdk/types/custom_entity_paginated_list.py +25 -0
  1613. benchling_v3_sdk/types/custom_entity_ref.py +24 -0
  1614. benchling_v3_sdk/types/custom_entity_schema.py +94 -0
  1615. benchling_v3_sdk/types/custom_entity_schema_available_registration_naming_options_item.py +16 -0
  1616. benchling_v3_sdk/types/custom_entity_schema_containable_type.py +5 -0
  1617. benchling_v3_sdk/types/custom_entity_schema_icon_id.py +87 -0
  1618. benchling_v3_sdk/types/custom_entity_schema_paginated_list.py +25 -0
  1619. benchling_v3_sdk/types/custom_entity_schema_ref.py +24 -0
  1620. benchling_v3_sdk/types/custom_entity_updated_webhook_envelope_v3.py +25 -0
  1621. benchling_v3_sdk/types/custom_entity_updated_webhook_v3.py +69 -0
  1622. benchling_v3_sdk/types/custom_entity_updated_webhook_v3type.py +5 -0
  1623. benchling_v3_sdk/types/custom_field.py +33 -0
  1624. benchling_v3_sdk/types/custom_field_input.py +27 -0
  1625. benchling_v3_sdk/types/custom_transform.py +43 -0
  1626. benchling_v3_sdk/types/custom_transform_type.py +23 -0
  1627. benchling_v3_sdk/types/custom_transformation_properties.py +36 -0
  1628. benchling_v3_sdk/types/cut_site_detail.py +41 -0
  1629. benchling_v3_sdk/types/data_frame.py +56 -0
  1630. benchling_v3_sdk/types/data_frame_column.py +35 -0
  1631. benchling_v3_sdk/types/data_frame_manifest_item.py +33 -0
  1632. benchling_v3_sdk/types/data_frame_paginated_list.py +25 -0
  1633. benchling_v3_sdk/types/data_frame_ref.py +24 -0
  1634. benchling_v3_sdk/types/data_frame_upload_status.py +7 -0
  1635. benchling_v3_sdk/types/data_parameter_value_plan.py +35 -0
  1636. benchling_v3_sdk/types/data_parameter_value_plan_input.py +35 -0
  1637. benchling_v3_sdk/types/dataset.py +52 -0
  1638. benchling_v3_sdk/types/dataset_paginated_list.py +25 -0
  1639. benchling_v3_sdk/types/dataset_ref.py +24 -0
  1640. benchling_v3_sdk/types/date_app_config_spec.py +30 -0
  1641. benchling_v3_sdk/types/date_app_config_value.py +29 -0
  1642. benchling_v3_sdk/types/date_cell_evaluation_value.py +32 -0
  1643. benchling_v3_sdk/types/date_field_definition.py +52 -0
  1644. benchling_v3_sdk/types/date_field_definition_derivation_type.py +5 -0
  1645. benchling_v3_sdk/types/date_time_app_config_spec.py +30 -0
  1646. benchling_v3_sdk/types/date_time_app_config_value.py +28 -0
  1647. benchling_v3_sdk/types/date_time_cell_evaluation_value.py +31 -0
  1648. benchling_v3_sdk/types/date_time_field_definition.py +52 -0
  1649. benchling_v3_sdk/types/date_time_field_definition_derivation_type.py +5 -0
  1650. benchling_v3_sdk/types/date_time_value.py +31 -0
  1651. benchling_v3_sdk/types/date_value.py +32 -0
  1652. benchling_v3_sdk/types/decimal_value.py +40 -0
  1653. benchling_v3_sdk/types/delete_collaboration_input_with_path_params.py +19 -0
  1654. benchling_v3_sdk/types/delete_document_parts_input.py +36 -0
  1655. benchling_v3_sdk/types/delete_document_parts_input_operation_type.py +5 -0
  1656. benchling_v3_sdk/types/delete_folder_input_with_path_params.py +19 -0
  1657. benchling_v3_sdk/types/delete_nucleotide_alignment_input_with_path_params.py +22 -0
  1658. benchling_v3_sdk/types/delete_procedure_method_execution_instance_association_input_with_path_params.py +19 -0
  1659. benchling_v3_sdk/types/delete_study_item_association_input_with_path_params.py +19 -0
  1660. benchling_v3_sdk/types/delete_worklist_input_with_path_params.py +19 -0
  1661. benchling_v3_sdk/types/dna_chain_configuration_input.py +26 -0
  1662. benchling_v3_sdk/types/dna_chain_configuration_input_system_category_id.py +5 -0
  1663. benchling_v3_sdk/types/dna_domain_configuration_input.py +26 -0
  1664. benchling_v3_sdk/types/dna_domain_configuration_input_system_category_id.py +5 -0
  1665. benchling_v3_sdk/types/dna_oligo.py +161 -0
  1666. benchling_v3_sdk/types/dna_oligo_created_webhook_envelope_v3.py +25 -0
  1667. benchling_v3_sdk/types/dna_oligo_created_webhook_v3.py +64 -0
  1668. benchling_v3_sdk/types/dna_oligo_created_webhook_v3type.py +5 -0
  1669. benchling_v3_sdk/types/dna_oligo_link_field_definition.py +81 -0
  1670. benchling_v3_sdk/types/dna_oligo_link_field_definition_derivation_type.py +5 -0
  1671. benchling_v3_sdk/types/dna_oligo_paginated_list.py +25 -0
  1672. benchling_v3_sdk/types/dna_oligo_schema.py +107 -0
  1673. benchling_v3_sdk/types/dna_oligo_schema_available_registration_naming_options_item.py +16 -0
  1674. benchling_v3_sdk/types/dna_oligo_schema_containable_type.py +5 -0
  1675. benchling_v3_sdk/types/dna_oligo_schema_icon_id.py +7 -0
  1676. benchling_v3_sdk/types/dna_oligo_schema_paginated_list.py +25 -0
  1677. benchling_v3_sdk/types/dna_oligo_schema_ref.py +24 -0
  1678. benchling_v3_sdk/types/dna_oligo_updated_webhook_envelope_v3.py +25 -0
  1679. benchling_v3_sdk/types/dna_oligo_updated_webhook_v3.py +69 -0
  1680. benchling_v3_sdk/types/dna_oligo_updated_webhook_v3type.py +5 -0
  1681. benchling_v3_sdk/types/dna_pair_configuration_input.py +26 -0
  1682. benchling_v3_sdk/types/dna_pair_configuration_input_system_category_id.py +5 -0
  1683. benchling_v3_sdk/types/dna_part.py +69 -0
  1684. benchling_v3_sdk/types/dna_part_link_field_definition.py +68 -0
  1685. benchling_v3_sdk/types/dna_part_link_field_definition_derivation_type.py +5 -0
  1686. benchling_v3_sdk/types/dna_part_paginated_list.py +25 -0
  1687. benchling_v3_sdk/types/dna_part_strand.py +5 -0
  1688. benchling_v3_sdk/types/dna_sequence.py +175 -0
  1689. benchling_v3_sdk/types/dna_sequence_created_webhook_envelope_v3.py +25 -0
  1690. benchling_v3_sdk/types/dna_sequence_created_webhook_v3.py +64 -0
  1691. benchling_v3_sdk/types/dna_sequence_created_webhook_v3type.py +5 -0
  1692. benchling_v3_sdk/types/dna_sequence_link_field_definition.py +74 -0
  1693. benchling_v3_sdk/types/dna_sequence_link_field_definition_derivation_type.py +7 -0
  1694. benchling_v3_sdk/types/dna_sequence_paginated_list.py +25 -0
  1695. benchling_v3_sdk/types/dna_sequence_ref.py +24 -0
  1696. benchling_v3_sdk/types/dna_sequence_schema.py +107 -0
  1697. benchling_v3_sdk/types/dna_sequence_schema_available_registration_naming_options_item.py +16 -0
  1698. benchling_v3_sdk/types/dna_sequence_schema_containable_type.py +5 -0
  1699. benchling_v3_sdk/types/dna_sequence_schema_icon_id.py +8 -0
  1700. benchling_v3_sdk/types/dna_sequence_schema_paginated_list.py +25 -0
  1701. benchling_v3_sdk/types/dna_sequence_schema_ref.py +24 -0
  1702. benchling_v3_sdk/types/dna_sequence_updated_webhook_envelope_v3.py +25 -0
  1703. benchling_v3_sdk/types/dna_sequence_updated_webhook_v3.py +69 -0
  1704. benchling_v3_sdk/types/dna_sequence_updated_webhook_v3type.py +5 -0
  1705. benchling_v3_sdk/types/dna_sub_element_configuration_input.py +26 -0
  1706. benchling_v3_sdk/types/dna_sub_element_configuration_input_system_category_id.py +5 -0
  1707. benchling_v3_sdk/types/document_content_input.py +154 -0
  1708. benchling_v3_sdk/types/document_content_input_content_type.py +18 -0
  1709. benchling_v3_sdk/types/document_content_input_header_type.py +5 -0
  1710. benchling_v3_sdk/types/document_content_input_list_type.py +7 -0
  1711. benchling_v3_sdk/types/document_embeddable.py +16 -0
  1712. benchling_v3_sdk/types/document_like_ref.py +24 -0
  1713. benchling_v3_sdk/types/document_like_version_metadata.py +47 -0
  1714. benchling_v3_sdk/types/document_part.py +76 -0
  1715. benchling_v3_sdk/types/document_part_content.py +39 -0
  1716. benchling_v3_sdk/types/document_part_paginated_list.py +25 -0
  1717. benchling_v3_sdk/types/domain_linked_schema.py +39 -0
  1718. benchling_v3_sdk/types/domain_linked_schema_domain_type.py +30 -0
  1719. benchling_v3_sdk/types/domain_linked_schema_input.py +36 -0
  1720. benchling_v3_sdk/types/dropdown.py +57 -0
  1721. benchling_v3_sdk/types/dropdown_app_config_spec.py +32 -0
  1722. benchling_v3_sdk/types/dropdown_link_field_definition.py +62 -0
  1723. benchling_v3_sdk/types/dropdown_link_field_definition_derivation_type.py +5 -0
  1724. benchling_v3_sdk/types/dropdown_link_field_definition_paginated_list.py +25 -0
  1725. benchling_v3_sdk/types/dropdown_multi_value_ui_block.py +36 -0
  1726. benchling_v3_sdk/types/dropdown_multi_value_ui_block_input.py +29 -0
  1727. benchling_v3_sdk/types/dropdown_multi_value_ui_block_input_type.py +5 -0
  1728. benchling_v3_sdk/types/dropdown_option.py +37 -0
  1729. benchling_v3_sdk/types/dropdown_option_paginated_list.py +25 -0
  1730. benchling_v3_sdk/types/dropdown_option_unpaginated_list.py +20 -0
  1731. benchling_v3_sdk/types/dropdown_paginated_list.py +25 -0
  1732. benchling_v3_sdk/types/dropdown_ref.py +24 -0
  1733. benchling_v3_sdk/types/dropdown_ui_block.py +36 -0
  1734. benchling_v3_sdk/types/dropdown_ui_block_input.py +29 -0
  1735. benchling_v3_sdk/types/dropdown_ui_block_input_type.py +5 -0
  1736. benchling_v3_sdk/types/duplicate_transform.py +42 -0
  1737. benchling_v3_sdk/types/duplicate_transform_type.py +23 -0
  1738. benchling_v3_sdk/types/duplicate_transformation_properties.py +45 -0
  1739. benchling_v3_sdk/types/editing_target_input.py +5 -0
  1740. benchling_v3_sdk/types/entity_name_template.py +34 -0
  1741. benchling_v3_sdk/types/entity_name_template_input.py +29 -0
  1742. benchling_v3_sdk/types/entity_name_template_part.py +35 -0
  1743. benchling_v3_sdk/types/entity_name_template_part_configuration.py +15 -0
  1744. benchling_v3_sdk/types/entity_name_template_part_input.py +22 -0
  1745. benchling_v3_sdk/types/entity_name_template_part_input_configuration.py +15 -0
  1746. benchling_v3_sdk/types/entity_name_template_part_input_type.py +22 -0
  1747. benchling_v3_sdk/types/entity_name_template_part_type.py +24 -0
  1748. benchling_v3_sdk/types/entity_ref.py +24 -0
  1749. benchling_v3_sdk/types/entity_schema.py +95 -0
  1750. benchling_v3_sdk/types/entity_schema_app_config_spec.py +43 -0
  1751. benchling_v3_sdk/types/entity_schema_app_config_spec_subtype.py +10 -0
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  1753. benchling_v3_sdk/types/entity_schema_app_config_value_subtype.py +10 -0
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  2020. benchling_v3_sdk/types/nucleotide_annotation_input_strand.py +5 -0
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  2022. benchling_v3_sdk/types/nucleotide_annotation_strand.py +5 -0
  2023. benchling_v3_sdk/types/nucleotide_monomer.py +182 -0
  2024. benchling_v3_sdk/types/nucleotide_monomer_monomer_type.py +5 -0
  2025. benchling_v3_sdk/types/nucleotide_monomer_natural_analog.py +7 -0
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  2027. benchling_v3_sdk/types/nucleotide_monomer_polymer_type.py +5 -0
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  2029. benchling_v3_sdk/types/nucleotide_monomer_visual_symbol.py +34 -0
  2030. benchling_v3_sdk/types/nucleotide_part_input.py +44 -0
  2031. benchling_v3_sdk/types/nucleotide_part_input_strand.py +5 -0
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  2033. benchling_v3_sdk/types/nucleotide_simple_polymer.py +60 -0
  2034. benchling_v3_sdk/types/nucleotide_simple_polymer_nucleotide_type.py +5 -0
  2035. benchling_v3_sdk/types/null_filter_transformation_properties.py +38 -0
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  2811. benchling_v3_sdk/types/worklistable.py +41 -0
  2812. benchling_v3_sdk/types/worklistable_unpaginated_list.py +20 -0
  2813. benchling_v3_sdk/types/worksheet.py +61 -0
  2814. benchling_v3_sdk/types/worksheet_paginated_list.py +25 -0
  2815. benchling_v3_sdk/unit/__init__.py +38 -0
  2816. benchling_v3_sdk/unit/client.py +996 -0
  2817. benchling_v3_sdk/unit/raw_client.py +2050 -0
  2818. benchling_v3_sdk/unit/types/__init__.py +40 -0
  2819. benchling_v3_sdk/unit/types/batch_create_unit_response.py +20 -0
  2820. benchling_v3_sdk/unit/types/batch_update_unit_response.py +20 -0
  2821. benchling_v3_sdk/unit/types/list_unit_request_sort.py +7 -0
  2822. benchling_v3_sdk/unit_type/__init__.py +38 -0
  2823. benchling_v3_sdk/unit_type/client.py +1140 -0
  2824. benchling_v3_sdk/unit_type/raw_client.py +2266 -0
  2825. benchling_v3_sdk/unit_type/types/__init__.py +40 -0
  2826. benchling_v3_sdk/unit_type/types/batch_create_unit_type_response.py +20 -0
  2827. benchling_v3_sdk/unit_type/types/batch_update_unit_type_response.py +20 -0
  2828. benchling_v3_sdk/unit_type/types/list_unit_type_request_sort.py +7 -0
  2829. benchling_v3_sdk/user/__init__.py +39 -0
  2830. benchling_v3_sdk/user/client.py +891 -0
  2831. benchling_v3_sdk/user/raw_client.py +1951 -0
  2832. benchling_v3_sdk/user/types/__init__.py +42 -0
  2833. benchling_v3_sdk/user/types/batch_create_user_response.py +20 -0
  2834. benchling_v3_sdk/user/types/batch_update_user_response.py +20 -0
  2835. benchling_v3_sdk/user/types/list_user_request_sort.py +5 -0
  2836. benchling_v3_sdk/user/types/update_user_input_status.py +5 -0
  2837. benchling_v3_sdk/version.py +3 -0
  2838. benchling_v3_sdk/warehouse_credential/__init__.py +37 -0
  2839. benchling_v3_sdk/warehouse_credential/client.py +731 -0
  2840. benchling_v3_sdk/warehouse_credential/raw_client.py +1533 -0
  2841. benchling_v3_sdk/warehouse_credential/types/__init__.py +38 -0
  2842. benchling_v3_sdk/warehouse_credential/types/batch_update_warehouse_credential_response.py +20 -0
  2843. benchling_v3_sdk/warehouse_credential/types/list_warehouse_credential_request_sort.py +7 -0
  2844. benchling_v3_sdk/warehouse_custom_view/__init__.py +34 -0
  2845. benchling_v3_sdk/warehouse_custom_view/client.py +368 -0
  2846. benchling_v3_sdk/warehouse_custom_view/raw_client.py +641 -0
  2847. benchling_v3_sdk/warehouse_custom_view/types/__init__.py +36 -0
  2848. benchling_v3_sdk/warehouse_custom_view/types/list_warehouse_custom_view_request_sort.py +7 -0
  2849. benchling_v3_sdk/well_plate/__init__.py +38 -0
  2850. benchling_v3_sdk/well_plate/client.py +1126 -0
  2851. benchling_v3_sdk/well_plate/raw_client.py +2336 -0
  2852. benchling_v3_sdk/well_plate/types/__init__.py +40 -0
  2853. benchling_v3_sdk/well_plate/types/batch_create_well_plate_response.py +20 -0
  2854. benchling_v3_sdk/well_plate/types/batch_update_well_plate_response.py +20 -0
  2855. benchling_v3_sdk/well_plate/types/list_well_plate_request_sort.py +7 -0
  2856. benchling_v3_sdk/well_plate_position/__init__.py +34 -0
  2857. benchling_v3_sdk/well_plate_position/client.py +388 -0
  2858. benchling_v3_sdk/well_plate_position/raw_client.py +673 -0
  2859. benchling_v3_sdk/well_plate_position/types/__init__.py +34 -0
  2860. benchling_v3_sdk/well_plate_position/types/list_well_plate_position_request_sort.py +7 -0
  2861. benchling_v3_sdk/well_plate_schema/__init__.py +42 -0
  2862. benchling_v3_sdk/well_plate_schema/client.py +1207 -0
  2863. benchling_v3_sdk/well_plate_schema/raw_client.py +2382 -0
  2864. benchling_v3_sdk/well_plate_schema/types/__init__.py +40 -0
  2865. benchling_v3_sdk/well_plate_schema/types/batch_create_well_plate_schema_response.py +20 -0
  2866. benchling_v3_sdk/well_plate_schema/types/batch_update_well_plate_schema_response.py +20 -0
  2867. benchling_v3_sdk/well_plate_schema/types/list_well_plate_schema_request_sort.py +7 -0
  2868. benchling_v3_sdk/workflow_output/__init__.py +42 -0
  2869. benchling_v3_sdk/workflow_output/client.py +942 -0
  2870. benchling_v3_sdk/workflow_output/raw_client.py +2027 -0
  2871. benchling_v3_sdk/workflow_output/types/__init__.py +40 -0
  2872. benchling_v3_sdk/workflow_output/types/batch_create_workflow_output_response.py +20 -0
  2873. benchling_v3_sdk/workflow_output/types/batch_update_workflow_output_response.py +20 -0
  2874. benchling_v3_sdk/workflow_output/types/list_workflow_output_request_sort.py +7 -0
  2875. benchling_v3_sdk/workflow_output_schema/__init__.py +34 -0
  2876. benchling_v3_sdk/workflow_output_schema/client.py +467 -0
  2877. benchling_v3_sdk/workflow_output_schema/raw_client.py +870 -0
  2878. benchling_v3_sdk/workflow_output_schema/types/__init__.py +36 -0
  2879. benchling_v3_sdk/workflow_output_schema/types/list_workflow_output_schema_request_sort.py +7 -0
  2880. benchling_v3_sdk/workflow_task/__init__.py +55 -0
  2881. benchling_v3_sdk/workflow_task/client.py +1637 -0
  2882. benchling_v3_sdk/workflow_task/raw_client.py +3182 -0
  2883. benchling_v3_sdk/workflow_task/types/__init__.py +53 -0
  2884. benchling_v3_sdk/workflow_task/types/batch_create_workflow_task_response.py +20 -0
  2885. benchling_v3_sdk/workflow_task/types/batch_update_workflow_task_response.py +20 -0
  2886. benchling_v3_sdk/workflow_task/types/list_child_tasks_workflow_task_request_sort.py +7 -0
  2887. benchling_v3_sdk/workflow_task/types/list_workflow_outputs_workflow_task_request_sort.py +7 -0
  2888. benchling_v3_sdk/workflow_task/types/list_workflow_task_request_sort.py +7 -0
  2889. benchling_v3_sdk/workflow_task/types/update_workflow_task_input_status.py +21 -0
  2890. benchling_v3_sdk/workflow_task_group/__init__.py +55 -0
  2891. benchling_v3_sdk/workflow_task_group/client.py +1903 -0
  2892. benchling_v3_sdk/workflow_task_group/raw_client.py +3617 -0
  2893. benchling_v3_sdk/workflow_task_group/types/__init__.py +55 -0
  2894. benchling_v3_sdk/workflow_task_group/types/batch_create_workflow_task_group_response.py +20 -0
  2895. benchling_v3_sdk/workflow_task_group/types/batch_update_workflow_task_group_response.py +20 -0
  2896. benchling_v3_sdk/workflow_task_group/types/list_child_workflow_task_groups_workflow_task_group_request_sort.py +7 -0
  2897. benchling_v3_sdk/workflow_task_group/types/list_workflow_outputs_workflow_task_group_request_sort.py +7 -0
  2898. benchling_v3_sdk/workflow_task_group/types/list_workflow_task_group_request_sort.py +7 -0
  2899. benchling_v3_sdk/workflow_task_group/types/list_workflow_tasks_workflow_task_group_request_sort.py +7 -0
  2900. benchling_v3_sdk/workflow_task_schema/__init__.py +64 -0
  2901. benchling_v3_sdk/workflow_task_schema/client.py +1676 -0
  2902. benchling_v3_sdk/workflow_task_schema/raw_client.py +3336 -0
  2903. benchling_v3_sdk/workflow_task_schema/types/__init__.py +74 -0
  2904. benchling_v3_sdk/workflow_task_schema/types/batch_create_workflow_task_schema_response.py +20 -0
  2905. benchling_v3_sdk/workflow_task_schema/types/batch_update_workflow_task_schema_response.py +20 -0
  2906. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_field_definitions_workflow_task_schema_response.py +25 -0
  2907. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_field_definitions_workflow_task_schema_response_status.py +7 -0
  2908. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_output_field_definitions_workflow_task_schema_response.py +25 -0
  2909. benchling_v3_sdk/workflow_task_schema/types/get_task_for_set_output_field_definitions_workflow_task_schema_response_status.py +7 -0
  2910. benchling_v3_sdk/workflow_task_schema/types/list_workflow_task_schema_request_sort.py +7 -0
  2911. benchling_v3_sdk/workflow_task_schema/types/workflow_task_schema_set_field_definitions_input_field_definitions_item.py +123 -0
  2912. benchling_v3_sdk/workflow_task_schema/types/workflow_task_schema_set_output_field_definitions_input_field_definitions_item.py +123 -0
  2913. benchling_v3_sdk/worklist/__init__.py +52 -0
  2914. benchling_v3_sdk/worklist/client.py +1176 -0
  2915. benchling_v3_sdk/worklist/raw_client.py +2594 -0
  2916. benchling_v3_sdk/worklist/types/__init__.py +50 -0
  2917. benchling_v3_sdk/worklist/types/batch_create_worklist_response.py +20 -0
  2918. benchling_v3_sdk/worklist/types/batch_delete_worklist_response.py +20 -0
  2919. benchling_v3_sdk/worklist/types/batch_delete_worklist_response_items_item.py +19 -0
  2920. benchling_v3_sdk/worklist/types/batch_update_worklist_response.py +20 -0
  2921. benchling_v3_sdk/worklist/types/list_worklist_request_sort.py +7 -0
  2922. benchling_v3_sdk/worksheet/__init__.py +34 -0
  2923. benchling_v3_sdk/worksheet/client.py +572 -0
  2924. benchling_v3_sdk/worksheet/raw_client.py +1115 -0
  2925. benchling_v3_sdk/worksheet/types/__init__.py +34 -0
  2926. benchling_v3_sdk/worksheet/types/list_worksheet_request_sort.py +7 -0
  2927. benchling_v3_sdk_python-5.0.0.dist-info/LICENSE +201 -0
  2928. benchling_v3_sdk_python-5.0.0.dist-info/METADATA +286 -0
  2929. benchling_v3_sdk_python-5.0.0.dist-info/RECORD +2930 -0
  2930. benchling_v3_sdk_python-5.0.0.dist-info/WHEEL +4 -0
@@ -0,0 +1,3616 @@
1
+ # This file was auto-generated by Fern from our API Definition.
2
+
3
+ import typing
4
+ from json.decoder import JSONDecodeError
5
+
6
+ from ..core.api_error import ApiError
7
+ from ..core.client_wrapper import AsyncClientWrapper, SyncClientWrapper
8
+ from ..core.http_response import AsyncHttpResponse, HttpResponse
9
+ from ..core.jsonable_encoder import encode_path_param
10
+ from ..core.pagination import AsyncPager, SyncPager
11
+ from ..core.parse_error import ParsingError
12
+ from ..core.pydantic_utilities import parse_obj_as
13
+ from ..core.request_options import RequestOptions
14
+ from ..core.serialization import convert_and_respect_annotation_metadata
15
+ from ..errors.bad_request_error import BadRequestError
16
+ from ..errors.forbidden_error import ForbiddenError
17
+ from ..errors.internal_server_error import InternalServerError
18
+ from ..errors.not_found_error import NotFoundError
19
+ from ..errors.too_many_requests_error import TooManyRequestsError
20
+ from ..types.async_task_link import AsyncTaskLink
21
+ from ..types.chain_linked_schema_input import ChainLinkedSchemaInput
22
+ from ..types.container_name_template_input import ContainerNameTemplateInput
23
+ from ..types.create_protein_schema_input import CreateProteinSchemaInput
24
+ from ..types.create_protein_schema_input_available_registration_naming_options_item import (
25
+ CreateProteinSchemaInputAvailableRegistrationNamingOptionsItem,
26
+ )
27
+ from ..types.create_protein_schema_input_field_definitions_item import CreateProteinSchemaInputFieldDefinitionsItem
28
+ from ..types.domain_linked_schema_input import DomainLinkedSchemaInput
29
+ from ..types.entity_name_template_input import EntityNameTemplateInput
30
+ from ..types.fieldset_unpaginated_list import FieldsetUnpaginatedList
31
+ from ..types.general_error import GeneralError
32
+ from ..types.internal_server_error_body import InternalServerErrorBody
33
+ from ..types.protein_schema import ProteinSchema
34
+ from ..types.protein_schema_paginated_list import ProteinSchemaPaginatedList
35
+ from ..types.schema_field_definition_unpaginated_list import SchemaFieldDefinitionUnpaginatedList
36
+ from ..types.system_category_configuration_input_base import SystemCategoryConfigurationInputBase
37
+ from ..types.update_protein_schema_input_with_path_params import UpdateProteinSchemaInputWithPathParams
38
+ from .types.batch_create_protein_schema_response import BatchCreateProteinSchemaResponse
39
+ from .types.batch_update_protein_schema_response import BatchUpdateProteinSchemaResponse
40
+ from .types.get_task_for_apply_fieldset_protein_schema_response import GetTaskForApplyFieldsetProteinSchemaResponse
41
+ from .types.get_task_for_set_field_definitions_protein_schema_response import (
42
+ GetTaskForSetFieldDefinitionsProteinSchemaResponse,
43
+ )
44
+ from .types.protein_schema_set_field_definitions_input_field_definitions_item import (
45
+ ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem,
46
+ )
47
+ from .types.update_protein_schema_input_available_registration_naming_options_item import (
48
+ UpdateProteinSchemaInputAvailableRegistrationNamingOptionsItem,
49
+ )
50
+ from pydantic import ValidationError
51
+
52
+ # this is used as the default value for optional parameters
53
+ OMIT = typing.cast(typing.Any, ...)
54
+
55
+
56
+ class RawProteinSchemaClient:
57
+ def __init__(self, *, client_wrapper: SyncClientWrapper):
58
+ self._client_wrapper = client_wrapper
59
+
60
+ def create(
61
+ self,
62
+ *,
63
+ chain_linked_schemas: typing.Sequence[ChainLinkedSchemaInput],
64
+ description: str,
65
+ domain_linked_schemas: typing.Sequence[DomainLinkedSchemaInput],
66
+ format_id: str,
67
+ item_id_prefix: str,
68
+ organization_id: str,
69
+ available_registration_naming_options: typing.Optional[
70
+ typing.Sequence[CreateProteinSchemaInputAvailableRegistrationNamingOptionsItem]
71
+ ] = OMIT,
72
+ display_name: typing.Optional[str] = OMIT,
73
+ field_definitions: typing.Optional[typing.Sequence[CreateProteinSchemaInputFieldDefinitionsItem]] = OMIT,
74
+ fieldsets: typing.Optional[typing.Sequence[str]] = OMIT,
75
+ include_registry_id_in_chips: typing.Optional[bool] = OMIT,
76
+ is_containable: typing.Optional[bool] = OMIT,
77
+ name: typing.Optional[str] = OMIT,
78
+ system_categories: typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]] = OMIT,
79
+ system_name: typing.Optional[str] = OMIT,
80
+ use_registry_id_for_item_display_label: typing.Optional[bool] = OMIT,
81
+ request_options: typing.Optional[RequestOptions] = None,
82
+ ) -> HttpResponse[ProteinSchema]:
83
+ """
84
+ Create ProteinSchema.
85
+
86
+ Parameters
87
+ ----------
88
+ chain_linked_schemas : typing.Sequence[ChainLinkedSchemaInput]
89
+ Schema mappings for chain labels in the protein format.
90
+
91
+ description : str
92
+ A human-readable description of the schema. At most 1000 characters.
93
+
94
+ domain_linked_schemas : typing.Sequence[DomainLinkedSchemaInput]
95
+ Schema mappings for each domain label in the protein format.
96
+
97
+ format_id : str
98
+ API ID of the protein format that defines the protein schema structure.
99
+
100
+ item_id_prefix : str
101
+
102
+ organization_id : str
103
+ The API ID of the organization this schema belongs to. The organization must exist and be accessible to the caller.
104
+
105
+ available_registration_naming_options : typing.Optional[typing.Sequence[CreateProteinSchemaInputAvailableRegistrationNamingOptionsItem]]
106
+
107
+ display_name : typing.Optional[str]
108
+ Deprecated. Use name instead.
109
+
110
+ field_definitions : typing.Optional[typing.Sequence[CreateProteinSchemaInputFieldDefinitionsItem]]
111
+ Optional schema field definitions to create on the protein schema.
112
+
113
+ fieldsets : typing.Optional[typing.Sequence[str]]
114
+
115
+ include_registry_id_in_chips : typing.Optional[bool]
116
+
117
+ is_containable : typing.Optional[bool]
118
+
119
+ name : typing.Optional[str]
120
+ The user-facing name of the schema. Must be non-empty after stripping whitespace, at most 255 characters, and unique within the organization.
121
+
122
+ system_categories : typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]]
123
+
124
+ system_name : typing.Optional[str]
125
+ The SQL identifier used as the warehouse table name. If not provided, one is auto-generated from the display name. Must match the pattern [a-z_][a-z0-9_$]*, cannot be a reserved table name, cannot start with 'bnch$', and must be unique within the organization.
126
+
127
+ use_registry_id_for_item_display_label : typing.Optional[bool]
128
+
129
+ request_options : typing.Optional[RequestOptions]
130
+ Request-specific configuration.
131
+
132
+ Returns
133
+ -------
134
+ HttpResponse[ProteinSchema]
135
+ Created
136
+ """
137
+ _response = self._client_wrapper.httpx_client.request(
138
+ "api/v3/protein-schema",
139
+ method="POST",
140
+ json={
141
+ "availableRegistrationNamingOptions": available_registration_naming_options,
142
+ "chainLinkedSchemas": convert_and_respect_annotation_metadata(
143
+ object_=chain_linked_schemas, annotation=typing.Sequence[ChainLinkedSchemaInput], direction="write"
144
+ ),
145
+ "description": description,
146
+ "displayName": display_name,
147
+ "domainLinkedSchemas": convert_and_respect_annotation_metadata(
148
+ object_=domain_linked_schemas,
149
+ annotation=typing.Sequence[DomainLinkedSchemaInput],
150
+ direction="write",
151
+ ),
152
+ "fieldDefinitions": convert_and_respect_annotation_metadata(
153
+ object_=field_definitions,
154
+ annotation=typing.Sequence[CreateProteinSchemaInputFieldDefinitionsItem],
155
+ direction="write",
156
+ ),
157
+ "fieldsets": fieldsets,
158
+ "formatId": format_id,
159
+ "includeRegistryIdInChips": include_registry_id_in_chips,
160
+ "isContainable": is_containable,
161
+ "itemIdPrefix": item_id_prefix,
162
+ "name": name,
163
+ "organizationId": organization_id,
164
+ "systemCategories": convert_and_respect_annotation_metadata(
165
+ object_=system_categories,
166
+ annotation=typing.Sequence[SystemCategoryConfigurationInputBase],
167
+ direction="write",
168
+ ),
169
+ "systemName": system_name,
170
+ "useRegistryIdForItemDisplayLabel": use_registry_id_for_item_display_label,
171
+ },
172
+ request_options=request_options,
173
+ omit=OMIT,
174
+ )
175
+ try:
176
+ if 200 <= _response.status_code < 300:
177
+ _data = typing.cast(
178
+ ProteinSchema,
179
+ parse_obj_as(
180
+ type_=ProteinSchema, # type: ignore
181
+ object_=_response.json(),
182
+ ),
183
+ )
184
+ return HttpResponse(response=_response, data=_data)
185
+ if _response.status_code == 400:
186
+ raise BadRequestError(
187
+ headers=dict(_response.headers),
188
+ body=typing.cast(
189
+ typing.Any,
190
+ parse_obj_as(
191
+ type_=typing.Any, # type: ignore
192
+ object_=_response.json(),
193
+ ),
194
+ ),
195
+ )
196
+ if _response.status_code == 403:
197
+ raise ForbiddenError(
198
+ headers=dict(_response.headers),
199
+ body=typing.cast(
200
+ GeneralError,
201
+ parse_obj_as(
202
+ type_=GeneralError, # type: ignore
203
+ object_=_response.json(),
204
+ ),
205
+ ),
206
+ )
207
+ if _response.status_code == 404:
208
+ raise NotFoundError(
209
+ headers=dict(_response.headers),
210
+ body=typing.cast(
211
+ GeneralError,
212
+ parse_obj_as(
213
+ type_=GeneralError, # type: ignore
214
+ object_=_response.json(),
215
+ ),
216
+ ),
217
+ )
218
+ if _response.status_code == 429:
219
+ raise TooManyRequestsError(
220
+ headers=dict(_response.headers),
221
+ body=typing.cast(
222
+ GeneralError,
223
+ parse_obj_as(
224
+ type_=GeneralError, # type: ignore
225
+ object_=_response.json(),
226
+ ),
227
+ ),
228
+ )
229
+ if _response.status_code == 500:
230
+ raise InternalServerError(
231
+ headers=dict(_response.headers),
232
+ body=typing.cast(
233
+ InternalServerErrorBody,
234
+ parse_obj_as(
235
+ type_=InternalServerErrorBody, # type: ignore
236
+ object_=_response.json(),
237
+ ),
238
+ ),
239
+ )
240
+ _response_json = _response.json()
241
+ except JSONDecodeError:
242
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
243
+ except ValidationError as e:
244
+ raise ParsingError(
245
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
246
+ )
247
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
248
+
249
+ def list(
250
+ self,
251
+ *,
252
+ next_token: typing.Optional[str] = None,
253
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
254
+ page_size: typing.Optional[int] = None,
255
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
256
+ request_options: typing.Optional[RequestOptions] = None,
257
+ ) -> SyncPager[ProteinSchema, ProteinSchemaPaginatedList]:
258
+ """
259
+ List ProteinSchema items.
260
+
261
+ Parameters
262
+ ----------
263
+ next_token : typing.Optional[str]
264
+ Token for pagination
265
+
266
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
267
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
268
+
269
+ page_size : typing.Optional[int]
270
+ Number of results to return. Defaults to 50, maximum of 100.
271
+
272
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
273
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
274
+
275
+ request_options : typing.Optional[RequestOptions]
276
+ Request-specific configuration.
277
+
278
+ Returns
279
+ -------
280
+ SyncPager[ProteinSchema, ProteinSchemaPaginatedList]
281
+ OK
282
+ """
283
+ _response = self._client_wrapper.httpx_client.request(
284
+ "api/v3/protein-schema/items",
285
+ method="GET",
286
+ params={
287
+ "nextToken": next_token,
288
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
289
+ "pageSize": page_size,
290
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
291
+ },
292
+ request_options=request_options,
293
+ )
294
+ try:
295
+ if 200 <= _response.status_code < 300:
296
+ _parsed_response = typing.cast(
297
+ ProteinSchemaPaginatedList,
298
+ parse_obj_as(
299
+ type_=ProteinSchemaPaginatedList, # type: ignore
300
+ object_=_response.json(),
301
+ ),
302
+ )
303
+ _items = _parsed_response.items
304
+ _parsed_next = _parsed_response.next_token
305
+ _has_next = _parsed_next is not None and _parsed_next != ""
306
+ _get_next = lambda: self.list(
307
+ next_token=_parsed_next,
308
+ omit=omit,
309
+ page_size=page_size,
310
+ returning=returning,
311
+ request_options=request_options,
312
+ )
313
+ return SyncPager(has_next=_has_next, items=_items, get_next=_get_next, response=_parsed_response)
314
+ if _response.status_code == 400:
315
+ raise BadRequestError(
316
+ headers=dict(_response.headers),
317
+ body=typing.cast(
318
+ typing.Any,
319
+ parse_obj_as(
320
+ type_=typing.Any, # type: ignore
321
+ object_=_response.json(),
322
+ ),
323
+ ),
324
+ )
325
+ if _response.status_code == 403:
326
+ raise ForbiddenError(
327
+ headers=dict(_response.headers),
328
+ body=typing.cast(
329
+ GeneralError,
330
+ parse_obj_as(
331
+ type_=GeneralError, # type: ignore
332
+ object_=_response.json(),
333
+ ),
334
+ ),
335
+ )
336
+ if _response.status_code == 404:
337
+ raise NotFoundError(
338
+ headers=dict(_response.headers),
339
+ body=typing.cast(
340
+ GeneralError,
341
+ parse_obj_as(
342
+ type_=GeneralError, # type: ignore
343
+ object_=_response.json(),
344
+ ),
345
+ ),
346
+ )
347
+ if _response.status_code == 429:
348
+ raise TooManyRequestsError(
349
+ headers=dict(_response.headers),
350
+ body=typing.cast(
351
+ GeneralError,
352
+ parse_obj_as(
353
+ type_=GeneralError, # type: ignore
354
+ object_=_response.json(),
355
+ ),
356
+ ),
357
+ )
358
+ if _response.status_code == 500:
359
+ raise InternalServerError(
360
+ headers=dict(_response.headers),
361
+ body=typing.cast(
362
+ InternalServerErrorBody,
363
+ parse_obj_as(
364
+ type_=InternalServerErrorBody, # type: ignore
365
+ object_=_response.json(),
366
+ ),
367
+ ),
368
+ )
369
+ _response_json = _response.json()
370
+ except JSONDecodeError:
371
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
372
+ except ValidationError as e:
373
+ raise ParsingError(
374
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
375
+ )
376
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
377
+
378
+ def get(
379
+ self,
380
+ protein_schema_id: str,
381
+ *,
382
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
383
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
384
+ request_options: typing.Optional[RequestOptions] = None,
385
+ ) -> HttpResponse[ProteinSchema]:
386
+ """
387
+ Get a single ProteinSchema by ID.
388
+
389
+ Parameters
390
+ ----------
391
+ protein_schema_id : str
392
+ ID of the ProteinSchema.
393
+
394
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
395
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
396
+
397
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
398
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
399
+
400
+ request_options : typing.Optional[RequestOptions]
401
+ Request-specific configuration.
402
+
403
+ Returns
404
+ -------
405
+ HttpResponse[ProteinSchema]
406
+ OK
407
+ """
408
+ _response = self._client_wrapper.httpx_client.request(
409
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}",
410
+ method="GET",
411
+ params={
412
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
413
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
414
+ },
415
+ request_options=request_options,
416
+ )
417
+ try:
418
+ if 200 <= _response.status_code < 300:
419
+ _data = typing.cast(
420
+ ProteinSchema,
421
+ parse_obj_as(
422
+ type_=ProteinSchema, # type: ignore
423
+ object_=_response.json(),
424
+ ),
425
+ )
426
+ return HttpResponse(response=_response, data=_data)
427
+ if _response.status_code == 400:
428
+ raise BadRequestError(
429
+ headers=dict(_response.headers),
430
+ body=typing.cast(
431
+ typing.Any,
432
+ parse_obj_as(
433
+ type_=typing.Any, # type: ignore
434
+ object_=_response.json(),
435
+ ),
436
+ ),
437
+ )
438
+ if _response.status_code == 403:
439
+ raise ForbiddenError(
440
+ headers=dict(_response.headers),
441
+ body=typing.cast(
442
+ GeneralError,
443
+ parse_obj_as(
444
+ type_=GeneralError, # type: ignore
445
+ object_=_response.json(),
446
+ ),
447
+ ),
448
+ )
449
+ if _response.status_code == 404:
450
+ raise NotFoundError(
451
+ headers=dict(_response.headers),
452
+ body=typing.cast(
453
+ GeneralError,
454
+ parse_obj_as(
455
+ type_=GeneralError, # type: ignore
456
+ object_=_response.json(),
457
+ ),
458
+ ),
459
+ )
460
+ if _response.status_code == 429:
461
+ raise TooManyRequestsError(
462
+ headers=dict(_response.headers),
463
+ body=typing.cast(
464
+ GeneralError,
465
+ parse_obj_as(
466
+ type_=GeneralError, # type: ignore
467
+ object_=_response.json(),
468
+ ),
469
+ ),
470
+ )
471
+ if _response.status_code == 500:
472
+ raise InternalServerError(
473
+ headers=dict(_response.headers),
474
+ body=typing.cast(
475
+ InternalServerErrorBody,
476
+ parse_obj_as(
477
+ type_=InternalServerErrorBody, # type: ignore
478
+ object_=_response.json(),
479
+ ),
480
+ ),
481
+ )
482
+ _response_json = _response.json()
483
+ except JSONDecodeError:
484
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
485
+ except ValidationError as e:
486
+ raise ParsingError(
487
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
488
+ )
489
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
490
+
491
+ def update(
492
+ self,
493
+ protein_schema_id: str,
494
+ *,
495
+ archive_reason: typing.Optional[str] = OMIT,
496
+ archived: typing.Optional[bool] = OMIT,
497
+ available_registration_naming_options: typing.Optional[
498
+ typing.Sequence[UpdateProteinSchemaInputAvailableRegistrationNamingOptionsItem]
499
+ ] = OMIT,
500
+ container_name_template: typing.Optional[ContainerNameTemplateInput] = OMIT,
501
+ description: typing.Optional[str] = OMIT,
502
+ display_name: typing.Optional[str] = OMIT,
503
+ include_registry_id_in_chips: typing.Optional[bool] = OMIT,
504
+ is_containable: typing.Optional[bool] = OMIT,
505
+ item_id_prefix: typing.Optional[str] = OMIT,
506
+ name: typing.Optional[str] = OMIT,
507
+ name_template: typing.Optional[EntityNameTemplateInput] = OMIT,
508
+ system_categories: typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]] = OMIT,
509
+ system_name: typing.Optional[str] = OMIT,
510
+ use_registry_id_for_item_display_label: typing.Optional[bool] = OMIT,
511
+ request_options: typing.Optional[RequestOptions] = None,
512
+ ) -> HttpResponse[ProteinSchema]:
513
+ """
514
+ Update ProteinSchema.
515
+
516
+ Parameters
517
+ ----------
518
+ protein_schema_id : str
519
+ ID of the ProteinSchema.
520
+
521
+ archive_reason : typing.Optional[str]
522
+
523
+ archived : typing.Optional[bool]
524
+
525
+ available_registration_naming_options : typing.Optional[typing.Sequence[UpdateProteinSchemaInputAvailableRegistrationNamingOptionsItem]]
526
+
527
+ container_name_template : typing.Optional[ContainerNameTemplateInput]
528
+ Replaces all existing container name template parts. Legacy datetimeFormat configurations are not preserved.
529
+
530
+ description : typing.Optional[str]
531
+ Updated description. When provided, must be at most 1000 characters.
532
+
533
+ display_name : typing.Optional[str]
534
+ Deprecated. Use name instead.
535
+
536
+ include_registry_id_in_chips : typing.Optional[bool]
537
+
538
+ is_containable : typing.Optional[bool]
539
+
540
+ item_id_prefix : typing.Optional[str]
541
+
542
+ name : typing.Optional[str]
543
+ Updated user-facing name. When provided, must be non-empty after stripping whitespace, at most 255 characters, and unique within the organization.
544
+
545
+ name_template : typing.Optional[EntityNameTemplateInput]
546
+ Replaces all existing entity name template parts. Legacy datetimeFormat configurations are not preserved. Updating the name template does not automatically modify availableRegistrationNamingOptions — update that field separately if needed.
547
+
548
+ system_categories : typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]]
549
+
550
+ system_name : typing.Optional[str]
551
+ Updated SQL identifier for the warehouse table name. When provided, must match the pattern [a-z_][a-z0-9_$]*, cannot be a reserved table name, cannot start with 'bnch$', and must be unique within the organization.
552
+
553
+ use_registry_id_for_item_display_label : typing.Optional[bool]
554
+
555
+ request_options : typing.Optional[RequestOptions]
556
+ Request-specific configuration.
557
+
558
+ Returns
559
+ -------
560
+ HttpResponse[ProteinSchema]
561
+ OK
562
+ """
563
+ _response = self._client_wrapper.httpx_client.request(
564
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}",
565
+ method="PATCH",
566
+ json={
567
+ "archiveReason": archive_reason,
568
+ "archived": archived,
569
+ "availableRegistrationNamingOptions": available_registration_naming_options,
570
+ "containerNameTemplate": convert_and_respect_annotation_metadata(
571
+ object_=container_name_template,
572
+ annotation=typing.Optional[ContainerNameTemplateInput],
573
+ direction="write",
574
+ ),
575
+ "description": description,
576
+ "displayName": display_name,
577
+ "includeRegistryIdInChips": include_registry_id_in_chips,
578
+ "isContainable": is_containable,
579
+ "itemIdPrefix": item_id_prefix,
580
+ "name": name,
581
+ "nameTemplate": convert_and_respect_annotation_metadata(
582
+ object_=name_template, annotation=typing.Optional[EntityNameTemplateInput], direction="write"
583
+ ),
584
+ "systemCategories": convert_and_respect_annotation_metadata(
585
+ object_=system_categories,
586
+ annotation=typing.Sequence[SystemCategoryConfigurationInputBase],
587
+ direction="write",
588
+ ),
589
+ "systemName": system_name,
590
+ "useRegistryIdForItemDisplayLabel": use_registry_id_for_item_display_label,
591
+ },
592
+ headers={
593
+ "content-type": "application/json",
594
+ },
595
+ request_options=request_options,
596
+ omit=OMIT,
597
+ )
598
+ try:
599
+ if 200 <= _response.status_code < 300:
600
+ _data = typing.cast(
601
+ ProteinSchema,
602
+ parse_obj_as(
603
+ type_=ProteinSchema, # type: ignore
604
+ object_=_response.json(),
605
+ ),
606
+ )
607
+ return HttpResponse(response=_response, data=_data)
608
+ if _response.status_code == 400:
609
+ raise BadRequestError(
610
+ headers=dict(_response.headers),
611
+ body=typing.cast(
612
+ typing.Any,
613
+ parse_obj_as(
614
+ type_=typing.Any, # type: ignore
615
+ object_=_response.json(),
616
+ ),
617
+ ),
618
+ )
619
+ if _response.status_code == 403:
620
+ raise ForbiddenError(
621
+ headers=dict(_response.headers),
622
+ body=typing.cast(
623
+ GeneralError,
624
+ parse_obj_as(
625
+ type_=GeneralError, # type: ignore
626
+ object_=_response.json(),
627
+ ),
628
+ ),
629
+ )
630
+ if _response.status_code == 404:
631
+ raise NotFoundError(
632
+ headers=dict(_response.headers),
633
+ body=typing.cast(
634
+ GeneralError,
635
+ parse_obj_as(
636
+ type_=GeneralError, # type: ignore
637
+ object_=_response.json(),
638
+ ),
639
+ ),
640
+ )
641
+ if _response.status_code == 429:
642
+ raise TooManyRequestsError(
643
+ headers=dict(_response.headers),
644
+ body=typing.cast(
645
+ GeneralError,
646
+ parse_obj_as(
647
+ type_=GeneralError, # type: ignore
648
+ object_=_response.json(),
649
+ ),
650
+ ),
651
+ )
652
+ if _response.status_code == 500:
653
+ raise InternalServerError(
654
+ headers=dict(_response.headers),
655
+ body=typing.cast(
656
+ InternalServerErrorBody,
657
+ parse_obj_as(
658
+ type_=InternalServerErrorBody, # type: ignore
659
+ object_=_response.json(),
660
+ ),
661
+ ),
662
+ )
663
+ _response_json = _response.json()
664
+ except JSONDecodeError:
665
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
666
+ except ValidationError as e:
667
+ raise ParsingError(
668
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
669
+ )
670
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
671
+
672
+ def list_field_definitions(
673
+ self, protein_schema_id: str, *, request_options: typing.Optional[RequestOptions] = None
674
+ ) -> HttpResponse[SchemaFieldDefinitionUnpaginatedList]:
675
+ """
676
+ List SchemaFieldDefinition items.
677
+
678
+ Parameters
679
+ ----------
680
+ protein_schema_id : str
681
+ ID of the ProteinSchema.
682
+
683
+ request_options : typing.Optional[RequestOptions]
684
+ Request-specific configuration.
685
+
686
+ Returns
687
+ -------
688
+ HttpResponse[SchemaFieldDefinitionUnpaginatedList]
689
+ OK
690
+ """
691
+ _response = self._client_wrapper.httpx_client.request(
692
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}/field-definitions/items",
693
+ method="GET",
694
+ request_options=request_options,
695
+ )
696
+ try:
697
+ if 200 <= _response.status_code < 300:
698
+ _data = typing.cast(
699
+ SchemaFieldDefinitionUnpaginatedList,
700
+ parse_obj_as(
701
+ type_=SchemaFieldDefinitionUnpaginatedList, # type: ignore
702
+ object_=_response.json(),
703
+ ),
704
+ )
705
+ return HttpResponse(response=_response, data=_data)
706
+ if _response.status_code == 400:
707
+ raise BadRequestError(
708
+ headers=dict(_response.headers),
709
+ body=typing.cast(
710
+ typing.Any,
711
+ parse_obj_as(
712
+ type_=typing.Any, # type: ignore
713
+ object_=_response.json(),
714
+ ),
715
+ ),
716
+ )
717
+ if _response.status_code == 403:
718
+ raise ForbiddenError(
719
+ headers=dict(_response.headers),
720
+ body=typing.cast(
721
+ GeneralError,
722
+ parse_obj_as(
723
+ type_=GeneralError, # type: ignore
724
+ object_=_response.json(),
725
+ ),
726
+ ),
727
+ )
728
+ if _response.status_code == 404:
729
+ raise NotFoundError(
730
+ headers=dict(_response.headers),
731
+ body=typing.cast(
732
+ GeneralError,
733
+ parse_obj_as(
734
+ type_=GeneralError, # type: ignore
735
+ object_=_response.json(),
736
+ ),
737
+ ),
738
+ )
739
+ if _response.status_code == 429:
740
+ raise TooManyRequestsError(
741
+ headers=dict(_response.headers),
742
+ body=typing.cast(
743
+ GeneralError,
744
+ parse_obj_as(
745
+ type_=GeneralError, # type: ignore
746
+ object_=_response.json(),
747
+ ),
748
+ ),
749
+ )
750
+ if _response.status_code == 500:
751
+ raise InternalServerError(
752
+ headers=dict(_response.headers),
753
+ body=typing.cast(
754
+ InternalServerErrorBody,
755
+ parse_obj_as(
756
+ type_=InternalServerErrorBody, # type: ignore
757
+ object_=_response.json(),
758
+ ),
759
+ ),
760
+ )
761
+ _response_json = _response.json()
762
+ except JSONDecodeError:
763
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
764
+ except ValidationError as e:
765
+ raise ParsingError(
766
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
767
+ )
768
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
769
+
770
+ def list_fieldsets(
771
+ self, protein_schema_id: str, *, request_options: typing.Optional[RequestOptions] = None
772
+ ) -> HttpResponse[FieldsetUnpaginatedList]:
773
+ """
774
+ List Fieldset items.
775
+
776
+ Parameters
777
+ ----------
778
+ protein_schema_id : str
779
+ ID of the ProteinSchema.
780
+
781
+ request_options : typing.Optional[RequestOptions]
782
+ Request-specific configuration.
783
+
784
+ Returns
785
+ -------
786
+ HttpResponse[FieldsetUnpaginatedList]
787
+ OK
788
+ """
789
+ _response = self._client_wrapper.httpx_client.request(
790
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}/fieldsets/items",
791
+ method="GET",
792
+ request_options=request_options,
793
+ )
794
+ try:
795
+ if 200 <= _response.status_code < 300:
796
+ _data = typing.cast(
797
+ FieldsetUnpaginatedList,
798
+ parse_obj_as(
799
+ type_=FieldsetUnpaginatedList, # type: ignore
800
+ object_=_response.json(),
801
+ ),
802
+ )
803
+ return HttpResponse(response=_response, data=_data)
804
+ if _response.status_code == 400:
805
+ raise BadRequestError(
806
+ headers=dict(_response.headers),
807
+ body=typing.cast(
808
+ typing.Any,
809
+ parse_obj_as(
810
+ type_=typing.Any, # type: ignore
811
+ object_=_response.json(),
812
+ ),
813
+ ),
814
+ )
815
+ if _response.status_code == 403:
816
+ raise ForbiddenError(
817
+ headers=dict(_response.headers),
818
+ body=typing.cast(
819
+ GeneralError,
820
+ parse_obj_as(
821
+ type_=GeneralError, # type: ignore
822
+ object_=_response.json(),
823
+ ),
824
+ ),
825
+ )
826
+ if _response.status_code == 404:
827
+ raise NotFoundError(
828
+ headers=dict(_response.headers),
829
+ body=typing.cast(
830
+ GeneralError,
831
+ parse_obj_as(
832
+ type_=GeneralError, # type: ignore
833
+ object_=_response.json(),
834
+ ),
835
+ ),
836
+ )
837
+ if _response.status_code == 429:
838
+ raise TooManyRequestsError(
839
+ headers=dict(_response.headers),
840
+ body=typing.cast(
841
+ GeneralError,
842
+ parse_obj_as(
843
+ type_=GeneralError, # type: ignore
844
+ object_=_response.json(),
845
+ ),
846
+ ),
847
+ )
848
+ if _response.status_code == 500:
849
+ raise InternalServerError(
850
+ headers=dict(_response.headers),
851
+ body=typing.cast(
852
+ InternalServerErrorBody,
853
+ parse_obj_as(
854
+ type_=InternalServerErrorBody, # type: ignore
855
+ object_=_response.json(),
856
+ ),
857
+ ),
858
+ )
859
+ _response_json = _response.json()
860
+ except JSONDecodeError:
861
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
862
+ except ValidationError as e:
863
+ raise ParsingError(
864
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
865
+ )
866
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
867
+
868
+ def apply_fieldset(
869
+ self,
870
+ protein_schema_id: str,
871
+ *,
872
+ fieldset_id: str,
873
+ acknowledge_warnings: typing.Optional[bool] = OMIT,
874
+ request_options: typing.Optional[RequestOptions] = None,
875
+ ) -> HttpResponse[AsyncTaskLink]:
876
+ """
877
+ Apply a fieldset to the schema
878
+
879
+ Parameters
880
+ ----------
881
+ protein_schema_id : str
882
+ ID of the ProteinSchema.
883
+
884
+ fieldset_id : str
885
+ The API ID of the fieldset to apply to the schema. The fieldset must exist and be accessible.
886
+
887
+ acknowledge_warnings : typing.Optional[bool]
888
+ If false, operation will only commit if there are no warnings in the output. If true, operation will commit even if there are warnings.
889
+
890
+ request_options : typing.Optional[RequestOptions]
891
+ Request-specific configuration.
892
+
893
+ Returns
894
+ -------
895
+ HttpResponse[AsyncTaskLink]
896
+ Task started
897
+ """
898
+ _response = self._client_wrapper.httpx_client.request(
899
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}:apply-fieldset",
900
+ method="POST",
901
+ json={
902
+ "acknowledgeWarnings": acknowledge_warnings,
903
+ "fieldsetId": fieldset_id,
904
+ },
905
+ headers={
906
+ "content-type": "application/json",
907
+ },
908
+ request_options=request_options,
909
+ omit=OMIT,
910
+ )
911
+ try:
912
+ if 200 <= _response.status_code < 300:
913
+ _data = typing.cast(
914
+ AsyncTaskLink,
915
+ parse_obj_as(
916
+ type_=AsyncTaskLink, # type: ignore
917
+ object_=_response.json(),
918
+ ),
919
+ )
920
+ return HttpResponse(response=_response, data=_data)
921
+ if _response.status_code == 400:
922
+ raise BadRequestError(
923
+ headers=dict(_response.headers),
924
+ body=typing.cast(
925
+ typing.Any,
926
+ parse_obj_as(
927
+ type_=typing.Any, # type: ignore
928
+ object_=_response.json(),
929
+ ),
930
+ ),
931
+ )
932
+ if _response.status_code == 403:
933
+ raise ForbiddenError(
934
+ headers=dict(_response.headers),
935
+ body=typing.cast(
936
+ GeneralError,
937
+ parse_obj_as(
938
+ type_=GeneralError, # type: ignore
939
+ object_=_response.json(),
940
+ ),
941
+ ),
942
+ )
943
+ if _response.status_code == 404:
944
+ raise NotFoundError(
945
+ headers=dict(_response.headers),
946
+ body=typing.cast(
947
+ GeneralError,
948
+ parse_obj_as(
949
+ type_=GeneralError, # type: ignore
950
+ object_=_response.json(),
951
+ ),
952
+ ),
953
+ )
954
+ if _response.status_code == 429:
955
+ raise TooManyRequestsError(
956
+ headers=dict(_response.headers),
957
+ body=typing.cast(
958
+ GeneralError,
959
+ parse_obj_as(
960
+ type_=GeneralError, # type: ignore
961
+ object_=_response.json(),
962
+ ),
963
+ ),
964
+ )
965
+ if _response.status_code == 500:
966
+ raise InternalServerError(
967
+ headers=dict(_response.headers),
968
+ body=typing.cast(
969
+ InternalServerErrorBody,
970
+ parse_obj_as(
971
+ type_=InternalServerErrorBody, # type: ignore
972
+ object_=_response.json(),
973
+ ),
974
+ ),
975
+ )
976
+ _response_json = _response.json()
977
+ except JSONDecodeError:
978
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
979
+ except ValidationError as e:
980
+ raise ParsingError(
981
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
982
+ )
983
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
984
+
985
+ def remove_fieldset(
986
+ self,
987
+ protein_schema_id: str,
988
+ *,
989
+ fieldset_id: str,
990
+ schema_prefix_replacement: typing.Optional[str] = OMIT,
991
+ request_options: typing.Optional[RequestOptions] = None,
992
+ ) -> HttpResponse[ProteinSchema]:
993
+ """
994
+ Remove a fieldset from the schema
995
+
996
+ Parameters
997
+ ----------
998
+ protein_schema_id : str
999
+ ID of the ProteinSchema.
1000
+
1001
+ fieldset_id : str
1002
+ The API ID of the fieldset to remove from the schema. The fieldset must exist and be accessible.
1003
+
1004
+ schema_prefix_replacement : typing.Optional[str]
1005
+ If and only if the fieldset being removed sets the schema's prefix, this field must be present to provide a replacement prefix. It is an error to supply this field if the fieldset being removed does not have a prefix.
1006
+
1007
+ request_options : typing.Optional[RequestOptions]
1008
+ Request-specific configuration.
1009
+
1010
+ Returns
1011
+ -------
1012
+ HttpResponse[ProteinSchema]
1013
+ OK
1014
+ """
1015
+ _response = self._client_wrapper.httpx_client.request(
1016
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}:remove-fieldset",
1017
+ method="POST",
1018
+ json={
1019
+ "fieldsetId": fieldset_id,
1020
+ "schemaPrefixReplacement": schema_prefix_replacement,
1021
+ },
1022
+ headers={
1023
+ "content-type": "application/json",
1024
+ },
1025
+ request_options=request_options,
1026
+ omit=OMIT,
1027
+ )
1028
+ try:
1029
+ if 200 <= _response.status_code < 300:
1030
+ _data = typing.cast(
1031
+ ProteinSchema,
1032
+ parse_obj_as(
1033
+ type_=ProteinSchema, # type: ignore
1034
+ object_=_response.json(),
1035
+ ),
1036
+ )
1037
+ return HttpResponse(response=_response, data=_data)
1038
+ if _response.status_code == 400:
1039
+ raise BadRequestError(
1040
+ headers=dict(_response.headers),
1041
+ body=typing.cast(
1042
+ typing.Any,
1043
+ parse_obj_as(
1044
+ type_=typing.Any, # type: ignore
1045
+ object_=_response.json(),
1046
+ ),
1047
+ ),
1048
+ )
1049
+ if _response.status_code == 403:
1050
+ raise ForbiddenError(
1051
+ headers=dict(_response.headers),
1052
+ body=typing.cast(
1053
+ GeneralError,
1054
+ parse_obj_as(
1055
+ type_=GeneralError, # type: ignore
1056
+ object_=_response.json(),
1057
+ ),
1058
+ ),
1059
+ )
1060
+ if _response.status_code == 404:
1061
+ raise NotFoundError(
1062
+ headers=dict(_response.headers),
1063
+ body=typing.cast(
1064
+ GeneralError,
1065
+ parse_obj_as(
1066
+ type_=GeneralError, # type: ignore
1067
+ object_=_response.json(),
1068
+ ),
1069
+ ),
1070
+ )
1071
+ if _response.status_code == 429:
1072
+ raise TooManyRequestsError(
1073
+ headers=dict(_response.headers),
1074
+ body=typing.cast(
1075
+ GeneralError,
1076
+ parse_obj_as(
1077
+ type_=GeneralError, # type: ignore
1078
+ object_=_response.json(),
1079
+ ),
1080
+ ),
1081
+ )
1082
+ if _response.status_code == 500:
1083
+ raise InternalServerError(
1084
+ headers=dict(_response.headers),
1085
+ body=typing.cast(
1086
+ InternalServerErrorBody,
1087
+ parse_obj_as(
1088
+ type_=InternalServerErrorBody, # type: ignore
1089
+ object_=_response.json(),
1090
+ ),
1091
+ ),
1092
+ )
1093
+ _response_json = _response.json()
1094
+ except JSONDecodeError:
1095
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1096
+ except ValidationError as e:
1097
+ raise ParsingError(
1098
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1099
+ )
1100
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1101
+
1102
+ def set_field_definitions(
1103
+ self,
1104
+ protein_schema_id: str,
1105
+ *,
1106
+ field_definitions: typing.Sequence[ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem],
1107
+ request_options: typing.Optional[RequestOptions] = None,
1108
+ ) -> HttpResponse[AsyncTaskLink]:
1109
+ """
1110
+ Set field definitions on the schema
1111
+
1112
+ Parameters
1113
+ ----------
1114
+ protein_schema_id : str
1115
+ ID of the ProteinSchema.
1116
+
1117
+ field_definitions : typing.Sequence[ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem]
1118
+
1119
+ request_options : typing.Optional[RequestOptions]
1120
+ Request-specific configuration.
1121
+
1122
+ Returns
1123
+ -------
1124
+ HttpResponse[AsyncTaskLink]
1125
+ Task started
1126
+ """
1127
+ _response = self._client_wrapper.httpx_client.request(
1128
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}:set-field-definitions",
1129
+ method="POST",
1130
+ json={
1131
+ "fieldDefinitions": convert_and_respect_annotation_metadata(
1132
+ object_=field_definitions,
1133
+ annotation=typing.Sequence[ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem],
1134
+ direction="write",
1135
+ ),
1136
+ },
1137
+ headers={
1138
+ "content-type": "application/json",
1139
+ },
1140
+ request_options=request_options,
1141
+ omit=OMIT,
1142
+ )
1143
+ try:
1144
+ if 200 <= _response.status_code < 300:
1145
+ _data = typing.cast(
1146
+ AsyncTaskLink,
1147
+ parse_obj_as(
1148
+ type_=AsyncTaskLink, # type: ignore
1149
+ object_=_response.json(),
1150
+ ),
1151
+ )
1152
+ return HttpResponse(response=_response, data=_data)
1153
+ if _response.status_code == 400:
1154
+ raise BadRequestError(
1155
+ headers=dict(_response.headers),
1156
+ body=typing.cast(
1157
+ typing.Any,
1158
+ parse_obj_as(
1159
+ type_=typing.Any, # type: ignore
1160
+ object_=_response.json(),
1161
+ ),
1162
+ ),
1163
+ )
1164
+ if _response.status_code == 403:
1165
+ raise ForbiddenError(
1166
+ headers=dict(_response.headers),
1167
+ body=typing.cast(
1168
+ GeneralError,
1169
+ parse_obj_as(
1170
+ type_=GeneralError, # type: ignore
1171
+ object_=_response.json(),
1172
+ ),
1173
+ ),
1174
+ )
1175
+ if _response.status_code == 404:
1176
+ raise NotFoundError(
1177
+ headers=dict(_response.headers),
1178
+ body=typing.cast(
1179
+ GeneralError,
1180
+ parse_obj_as(
1181
+ type_=GeneralError, # type: ignore
1182
+ object_=_response.json(),
1183
+ ),
1184
+ ),
1185
+ )
1186
+ if _response.status_code == 429:
1187
+ raise TooManyRequestsError(
1188
+ headers=dict(_response.headers),
1189
+ body=typing.cast(
1190
+ GeneralError,
1191
+ parse_obj_as(
1192
+ type_=GeneralError, # type: ignore
1193
+ object_=_response.json(),
1194
+ ),
1195
+ ),
1196
+ )
1197
+ if _response.status_code == 500:
1198
+ raise InternalServerError(
1199
+ headers=dict(_response.headers),
1200
+ body=typing.cast(
1201
+ InternalServerErrorBody,
1202
+ parse_obj_as(
1203
+ type_=InternalServerErrorBody, # type: ignore
1204
+ object_=_response.json(),
1205
+ ),
1206
+ ),
1207
+ )
1208
+ _response_json = _response.json()
1209
+ except JSONDecodeError:
1210
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1211
+ except ValidationError as e:
1212
+ raise ParsingError(
1213
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1214
+ )
1215
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1216
+
1217
+ def batch_create(
1218
+ self,
1219
+ *,
1220
+ items: typing.Sequence[CreateProteinSchemaInput],
1221
+ request_options: typing.Optional[RequestOptions] = None,
1222
+ ) -> HttpResponse[BatchCreateProteinSchemaResponse]:
1223
+ """
1224
+ Batch create ProteinSchema synchronously in one transaction. Maximum 25 items per request.
1225
+
1226
+ Parameters
1227
+ ----------
1228
+ items : typing.Sequence[CreateProteinSchemaInput]
1229
+
1230
+ request_options : typing.Optional[RequestOptions]
1231
+ Request-specific configuration.
1232
+
1233
+ Returns
1234
+ -------
1235
+ HttpResponse[BatchCreateProteinSchemaResponse]
1236
+ Created
1237
+ """
1238
+ _response = self._client_wrapper.httpx_client.request(
1239
+ "api/v3/protein-schema:batch-create",
1240
+ method="POST",
1241
+ json={
1242
+ "items": convert_and_respect_annotation_metadata(
1243
+ object_=items, annotation=typing.Sequence[CreateProteinSchemaInput], direction="write"
1244
+ ),
1245
+ },
1246
+ headers={
1247
+ "content-type": "application/json",
1248
+ },
1249
+ request_options=request_options,
1250
+ omit=OMIT,
1251
+ )
1252
+ try:
1253
+ if 200 <= _response.status_code < 300:
1254
+ _data = typing.cast(
1255
+ BatchCreateProteinSchemaResponse,
1256
+ parse_obj_as(
1257
+ type_=BatchCreateProteinSchemaResponse, # type: ignore
1258
+ object_=_response.json(),
1259
+ ),
1260
+ )
1261
+ return HttpResponse(response=_response, data=_data)
1262
+ if _response.status_code == 400:
1263
+ raise BadRequestError(
1264
+ headers=dict(_response.headers),
1265
+ body=typing.cast(
1266
+ typing.Any,
1267
+ parse_obj_as(
1268
+ type_=typing.Any, # type: ignore
1269
+ object_=_response.json(),
1270
+ ),
1271
+ ),
1272
+ )
1273
+ if _response.status_code == 403:
1274
+ raise ForbiddenError(
1275
+ headers=dict(_response.headers),
1276
+ body=typing.cast(
1277
+ GeneralError,
1278
+ parse_obj_as(
1279
+ type_=GeneralError, # type: ignore
1280
+ object_=_response.json(),
1281
+ ),
1282
+ ),
1283
+ )
1284
+ if _response.status_code == 404:
1285
+ raise NotFoundError(
1286
+ headers=dict(_response.headers),
1287
+ body=typing.cast(
1288
+ GeneralError,
1289
+ parse_obj_as(
1290
+ type_=GeneralError, # type: ignore
1291
+ object_=_response.json(),
1292
+ ),
1293
+ ),
1294
+ )
1295
+ if _response.status_code == 429:
1296
+ raise TooManyRequestsError(
1297
+ headers=dict(_response.headers),
1298
+ body=typing.cast(
1299
+ GeneralError,
1300
+ parse_obj_as(
1301
+ type_=GeneralError, # type: ignore
1302
+ object_=_response.json(),
1303
+ ),
1304
+ ),
1305
+ )
1306
+ if _response.status_code == 500:
1307
+ raise InternalServerError(
1308
+ headers=dict(_response.headers),
1309
+ body=typing.cast(
1310
+ InternalServerErrorBody,
1311
+ parse_obj_as(
1312
+ type_=InternalServerErrorBody, # type: ignore
1313
+ object_=_response.json(),
1314
+ ),
1315
+ ),
1316
+ )
1317
+ _response_json = _response.json()
1318
+ except JSONDecodeError:
1319
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1320
+ except ValidationError as e:
1321
+ raise ParsingError(
1322
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1323
+ )
1324
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1325
+
1326
+ def batch_update(
1327
+ self,
1328
+ *,
1329
+ items: typing.Sequence[UpdateProteinSchemaInputWithPathParams],
1330
+ request_options: typing.Optional[RequestOptions] = None,
1331
+ ) -> HttpResponse[BatchUpdateProteinSchemaResponse]:
1332
+ """
1333
+ Batch update ProteinSchema synchronously in one transaction. Maximum 25 items per request.
1334
+
1335
+ Parameters
1336
+ ----------
1337
+ items : typing.Sequence[UpdateProteinSchemaInputWithPathParams]
1338
+
1339
+ request_options : typing.Optional[RequestOptions]
1340
+ Request-specific configuration.
1341
+
1342
+ Returns
1343
+ -------
1344
+ HttpResponse[BatchUpdateProteinSchemaResponse]
1345
+ OK
1346
+ """
1347
+ _response = self._client_wrapper.httpx_client.request(
1348
+ "api/v3/protein-schema:batch-update",
1349
+ method="PATCH",
1350
+ json={
1351
+ "items": convert_and_respect_annotation_metadata(
1352
+ object_=items, annotation=typing.Sequence[UpdateProteinSchemaInputWithPathParams], direction="write"
1353
+ ),
1354
+ },
1355
+ headers={
1356
+ "content-type": "application/json",
1357
+ },
1358
+ request_options=request_options,
1359
+ omit=OMIT,
1360
+ )
1361
+ try:
1362
+ if 200 <= _response.status_code < 300:
1363
+ _data = typing.cast(
1364
+ BatchUpdateProteinSchemaResponse,
1365
+ parse_obj_as(
1366
+ type_=BatchUpdateProteinSchemaResponse, # type: ignore
1367
+ object_=_response.json(),
1368
+ ),
1369
+ )
1370
+ return HttpResponse(response=_response, data=_data)
1371
+ if _response.status_code == 400:
1372
+ raise BadRequestError(
1373
+ headers=dict(_response.headers),
1374
+ body=typing.cast(
1375
+ typing.Any,
1376
+ parse_obj_as(
1377
+ type_=typing.Any, # type: ignore
1378
+ object_=_response.json(),
1379
+ ),
1380
+ ),
1381
+ )
1382
+ if _response.status_code == 403:
1383
+ raise ForbiddenError(
1384
+ headers=dict(_response.headers),
1385
+ body=typing.cast(
1386
+ GeneralError,
1387
+ parse_obj_as(
1388
+ type_=GeneralError, # type: ignore
1389
+ object_=_response.json(),
1390
+ ),
1391
+ ),
1392
+ )
1393
+ if _response.status_code == 404:
1394
+ raise NotFoundError(
1395
+ headers=dict(_response.headers),
1396
+ body=typing.cast(
1397
+ GeneralError,
1398
+ parse_obj_as(
1399
+ type_=GeneralError, # type: ignore
1400
+ object_=_response.json(),
1401
+ ),
1402
+ ),
1403
+ )
1404
+ if _response.status_code == 429:
1405
+ raise TooManyRequestsError(
1406
+ headers=dict(_response.headers),
1407
+ body=typing.cast(
1408
+ GeneralError,
1409
+ parse_obj_as(
1410
+ type_=GeneralError, # type: ignore
1411
+ object_=_response.json(),
1412
+ ),
1413
+ ),
1414
+ )
1415
+ if _response.status_code == 500:
1416
+ raise InternalServerError(
1417
+ headers=dict(_response.headers),
1418
+ body=typing.cast(
1419
+ InternalServerErrorBody,
1420
+ parse_obj_as(
1421
+ type_=InternalServerErrorBody, # type: ignore
1422
+ object_=_response.json(),
1423
+ ),
1424
+ ),
1425
+ )
1426
+ _response_json = _response.json()
1427
+ except JSONDecodeError:
1428
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1429
+ except ValidationError as e:
1430
+ raise ParsingError(
1431
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1432
+ )
1433
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1434
+
1435
+ def bulk_create(
1436
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
1437
+ ) -> HttpResponse[AsyncTaskLink]:
1438
+ """
1439
+ Bulk create ProteinSchema.
1440
+
1441
+ Parameters
1442
+ ----------
1443
+ file_id : str
1444
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
1445
+
1446
+ request_options : typing.Optional[RequestOptions]
1447
+ Request-specific configuration.
1448
+
1449
+ Returns
1450
+ -------
1451
+ HttpResponse[AsyncTaskLink]
1452
+ Task started
1453
+ """
1454
+ _response = self._client_wrapper.httpx_client.request(
1455
+ "api/v3/protein-schema:bulk-create",
1456
+ method="POST",
1457
+ json={
1458
+ "fileId": file_id,
1459
+ },
1460
+ request_options=request_options,
1461
+ omit=OMIT,
1462
+ )
1463
+ try:
1464
+ if 200 <= _response.status_code < 300:
1465
+ _data = typing.cast(
1466
+ AsyncTaskLink,
1467
+ parse_obj_as(
1468
+ type_=AsyncTaskLink, # type: ignore
1469
+ object_=_response.json(),
1470
+ ),
1471
+ )
1472
+ return HttpResponse(response=_response, data=_data)
1473
+ if _response.status_code == 400:
1474
+ raise BadRequestError(
1475
+ headers=dict(_response.headers),
1476
+ body=typing.cast(
1477
+ typing.Any,
1478
+ parse_obj_as(
1479
+ type_=typing.Any, # type: ignore
1480
+ object_=_response.json(),
1481
+ ),
1482
+ ),
1483
+ )
1484
+ if _response.status_code == 403:
1485
+ raise ForbiddenError(
1486
+ headers=dict(_response.headers),
1487
+ body=typing.cast(
1488
+ GeneralError,
1489
+ parse_obj_as(
1490
+ type_=GeneralError, # type: ignore
1491
+ object_=_response.json(),
1492
+ ),
1493
+ ),
1494
+ )
1495
+ if _response.status_code == 404:
1496
+ raise NotFoundError(
1497
+ headers=dict(_response.headers),
1498
+ body=typing.cast(
1499
+ GeneralError,
1500
+ parse_obj_as(
1501
+ type_=GeneralError, # type: ignore
1502
+ object_=_response.json(),
1503
+ ),
1504
+ ),
1505
+ )
1506
+ if _response.status_code == 429:
1507
+ raise TooManyRequestsError(
1508
+ headers=dict(_response.headers),
1509
+ body=typing.cast(
1510
+ GeneralError,
1511
+ parse_obj_as(
1512
+ type_=GeneralError, # type: ignore
1513
+ object_=_response.json(),
1514
+ ),
1515
+ ),
1516
+ )
1517
+ if _response.status_code == 500:
1518
+ raise InternalServerError(
1519
+ headers=dict(_response.headers),
1520
+ body=typing.cast(
1521
+ InternalServerErrorBody,
1522
+ parse_obj_as(
1523
+ type_=InternalServerErrorBody, # type: ignore
1524
+ object_=_response.json(),
1525
+ ),
1526
+ ),
1527
+ )
1528
+ _response_json = _response.json()
1529
+ except JSONDecodeError:
1530
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1531
+ except ValidationError as e:
1532
+ raise ParsingError(
1533
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1534
+ )
1535
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1536
+
1537
+ def bulk_update(
1538
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
1539
+ ) -> HttpResponse[AsyncTaskLink]:
1540
+ """
1541
+ Bulk update ProteinSchema.
1542
+
1543
+ Parameters
1544
+ ----------
1545
+ file_id : str
1546
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
1547
+
1548
+ request_options : typing.Optional[RequestOptions]
1549
+ Request-specific configuration.
1550
+
1551
+ Returns
1552
+ -------
1553
+ HttpResponse[AsyncTaskLink]
1554
+ Task started
1555
+ """
1556
+ _response = self._client_wrapper.httpx_client.request(
1557
+ "api/v3/protein-schema:bulk-update",
1558
+ method="PATCH",
1559
+ json={
1560
+ "fileId": file_id,
1561
+ },
1562
+ request_options=request_options,
1563
+ omit=OMIT,
1564
+ )
1565
+ try:
1566
+ if 200 <= _response.status_code < 300:
1567
+ _data = typing.cast(
1568
+ AsyncTaskLink,
1569
+ parse_obj_as(
1570
+ type_=AsyncTaskLink, # type: ignore
1571
+ object_=_response.json(),
1572
+ ),
1573
+ )
1574
+ return HttpResponse(response=_response, data=_data)
1575
+ if _response.status_code == 400:
1576
+ raise BadRequestError(
1577
+ headers=dict(_response.headers),
1578
+ body=typing.cast(
1579
+ typing.Any,
1580
+ parse_obj_as(
1581
+ type_=typing.Any, # type: ignore
1582
+ object_=_response.json(),
1583
+ ),
1584
+ ),
1585
+ )
1586
+ if _response.status_code == 403:
1587
+ raise ForbiddenError(
1588
+ headers=dict(_response.headers),
1589
+ body=typing.cast(
1590
+ GeneralError,
1591
+ parse_obj_as(
1592
+ type_=GeneralError, # type: ignore
1593
+ object_=_response.json(),
1594
+ ),
1595
+ ),
1596
+ )
1597
+ if _response.status_code == 404:
1598
+ raise NotFoundError(
1599
+ headers=dict(_response.headers),
1600
+ body=typing.cast(
1601
+ GeneralError,
1602
+ parse_obj_as(
1603
+ type_=GeneralError, # type: ignore
1604
+ object_=_response.json(),
1605
+ ),
1606
+ ),
1607
+ )
1608
+ if _response.status_code == 429:
1609
+ raise TooManyRequestsError(
1610
+ headers=dict(_response.headers),
1611
+ body=typing.cast(
1612
+ GeneralError,
1613
+ parse_obj_as(
1614
+ type_=GeneralError, # type: ignore
1615
+ object_=_response.json(),
1616
+ ),
1617
+ ),
1618
+ )
1619
+ if _response.status_code == 500:
1620
+ raise InternalServerError(
1621
+ headers=dict(_response.headers),
1622
+ body=typing.cast(
1623
+ InternalServerErrorBody,
1624
+ parse_obj_as(
1625
+ type_=InternalServerErrorBody, # type: ignore
1626
+ object_=_response.json(),
1627
+ ),
1628
+ ),
1629
+ )
1630
+ _response_json = _response.json()
1631
+ except JSONDecodeError:
1632
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1633
+ except ValidationError as e:
1634
+ raise ParsingError(
1635
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1636
+ )
1637
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1638
+
1639
+ def get_task_for_apply_fieldset(
1640
+ self, task_id: str, *, request_options: typing.Optional[RequestOptions] = None
1641
+ ) -> HttpResponse[GetTaskForApplyFieldsetProteinSchemaResponse]:
1642
+ """
1643
+ Poll status for Apply a fieldset to the schema.
1644
+
1645
+ Parameters
1646
+ ----------
1647
+ task_id : str
1648
+ ID of the asynchronous task to poll.
1649
+
1650
+ request_options : typing.Optional[RequestOptions]
1651
+ Request-specific configuration.
1652
+
1653
+ Returns
1654
+ -------
1655
+ HttpResponse[GetTaskForApplyFieldsetProteinSchemaResponse]
1656
+ OK
1657
+ """
1658
+ _response = self._client_wrapper.httpx_client.request(
1659
+ f"api/v3/tasks/protein-schema/apply-fieldset/{encode_path_param(task_id)}",
1660
+ method="GET",
1661
+ request_options=request_options,
1662
+ )
1663
+ try:
1664
+ if 200 <= _response.status_code < 300:
1665
+ _data = typing.cast(
1666
+ GetTaskForApplyFieldsetProteinSchemaResponse,
1667
+ parse_obj_as(
1668
+ type_=GetTaskForApplyFieldsetProteinSchemaResponse, # type: ignore
1669
+ object_=_response.json(),
1670
+ ),
1671
+ )
1672
+ return HttpResponse(response=_response, data=_data)
1673
+ if _response.status_code == 400:
1674
+ raise BadRequestError(
1675
+ headers=dict(_response.headers),
1676
+ body=typing.cast(
1677
+ typing.Any,
1678
+ parse_obj_as(
1679
+ type_=typing.Any, # type: ignore
1680
+ object_=_response.json(),
1681
+ ),
1682
+ ),
1683
+ )
1684
+ if _response.status_code == 403:
1685
+ raise ForbiddenError(
1686
+ headers=dict(_response.headers),
1687
+ body=typing.cast(
1688
+ GeneralError,
1689
+ parse_obj_as(
1690
+ type_=GeneralError, # type: ignore
1691
+ object_=_response.json(),
1692
+ ),
1693
+ ),
1694
+ )
1695
+ if _response.status_code == 404:
1696
+ raise NotFoundError(
1697
+ headers=dict(_response.headers),
1698
+ body=typing.cast(
1699
+ GeneralError,
1700
+ parse_obj_as(
1701
+ type_=GeneralError, # type: ignore
1702
+ object_=_response.json(),
1703
+ ),
1704
+ ),
1705
+ )
1706
+ if _response.status_code == 429:
1707
+ raise TooManyRequestsError(
1708
+ headers=dict(_response.headers),
1709
+ body=typing.cast(
1710
+ GeneralError,
1711
+ parse_obj_as(
1712
+ type_=GeneralError, # type: ignore
1713
+ object_=_response.json(),
1714
+ ),
1715
+ ),
1716
+ )
1717
+ if _response.status_code == 500:
1718
+ raise InternalServerError(
1719
+ headers=dict(_response.headers),
1720
+ body=typing.cast(
1721
+ InternalServerErrorBody,
1722
+ parse_obj_as(
1723
+ type_=InternalServerErrorBody, # type: ignore
1724
+ object_=_response.json(),
1725
+ ),
1726
+ ),
1727
+ )
1728
+ _response_json = _response.json()
1729
+ except JSONDecodeError:
1730
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1731
+ except ValidationError as e:
1732
+ raise ParsingError(
1733
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1734
+ )
1735
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1736
+
1737
+ def get_task_for_set_field_definitions(
1738
+ self, task_id: str, *, request_options: typing.Optional[RequestOptions] = None
1739
+ ) -> HttpResponse[GetTaskForSetFieldDefinitionsProteinSchemaResponse]:
1740
+ """
1741
+ Poll status for Set field definitions on the schema.
1742
+
1743
+ Parameters
1744
+ ----------
1745
+ task_id : str
1746
+ ID of the asynchronous task to poll.
1747
+
1748
+ request_options : typing.Optional[RequestOptions]
1749
+ Request-specific configuration.
1750
+
1751
+ Returns
1752
+ -------
1753
+ HttpResponse[GetTaskForSetFieldDefinitionsProteinSchemaResponse]
1754
+ OK
1755
+ """
1756
+ _response = self._client_wrapper.httpx_client.request(
1757
+ f"api/v3/tasks/protein-schema/set-field-definitions/{encode_path_param(task_id)}",
1758
+ method="GET",
1759
+ request_options=request_options,
1760
+ )
1761
+ try:
1762
+ if 200 <= _response.status_code < 300:
1763
+ _data = typing.cast(
1764
+ GetTaskForSetFieldDefinitionsProteinSchemaResponse,
1765
+ parse_obj_as(
1766
+ type_=GetTaskForSetFieldDefinitionsProteinSchemaResponse, # type: ignore
1767
+ object_=_response.json(),
1768
+ ),
1769
+ )
1770
+ return HttpResponse(response=_response, data=_data)
1771
+ if _response.status_code == 400:
1772
+ raise BadRequestError(
1773
+ headers=dict(_response.headers),
1774
+ body=typing.cast(
1775
+ typing.Any,
1776
+ parse_obj_as(
1777
+ type_=typing.Any, # type: ignore
1778
+ object_=_response.json(),
1779
+ ),
1780
+ ),
1781
+ )
1782
+ if _response.status_code == 403:
1783
+ raise ForbiddenError(
1784
+ headers=dict(_response.headers),
1785
+ body=typing.cast(
1786
+ GeneralError,
1787
+ parse_obj_as(
1788
+ type_=GeneralError, # type: ignore
1789
+ object_=_response.json(),
1790
+ ),
1791
+ ),
1792
+ )
1793
+ if _response.status_code == 404:
1794
+ raise NotFoundError(
1795
+ headers=dict(_response.headers),
1796
+ body=typing.cast(
1797
+ GeneralError,
1798
+ parse_obj_as(
1799
+ type_=GeneralError, # type: ignore
1800
+ object_=_response.json(),
1801
+ ),
1802
+ ),
1803
+ )
1804
+ if _response.status_code == 429:
1805
+ raise TooManyRequestsError(
1806
+ headers=dict(_response.headers),
1807
+ body=typing.cast(
1808
+ GeneralError,
1809
+ parse_obj_as(
1810
+ type_=GeneralError, # type: ignore
1811
+ object_=_response.json(),
1812
+ ),
1813
+ ),
1814
+ )
1815
+ if _response.status_code == 500:
1816
+ raise InternalServerError(
1817
+ headers=dict(_response.headers),
1818
+ body=typing.cast(
1819
+ InternalServerErrorBody,
1820
+ parse_obj_as(
1821
+ type_=InternalServerErrorBody, # type: ignore
1822
+ object_=_response.json(),
1823
+ ),
1824
+ ),
1825
+ )
1826
+ _response_json = _response.json()
1827
+ except JSONDecodeError:
1828
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
1829
+ except ValidationError as e:
1830
+ raise ParsingError(
1831
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
1832
+ )
1833
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
1834
+
1835
+
1836
+ class AsyncRawProteinSchemaClient:
1837
+ def __init__(self, *, client_wrapper: AsyncClientWrapper):
1838
+ self._client_wrapper = client_wrapper
1839
+
1840
+ async def create(
1841
+ self,
1842
+ *,
1843
+ chain_linked_schemas: typing.Sequence[ChainLinkedSchemaInput],
1844
+ description: str,
1845
+ domain_linked_schemas: typing.Sequence[DomainLinkedSchemaInput],
1846
+ format_id: str,
1847
+ item_id_prefix: str,
1848
+ organization_id: str,
1849
+ available_registration_naming_options: typing.Optional[
1850
+ typing.Sequence[CreateProteinSchemaInputAvailableRegistrationNamingOptionsItem]
1851
+ ] = OMIT,
1852
+ display_name: typing.Optional[str] = OMIT,
1853
+ field_definitions: typing.Optional[typing.Sequence[CreateProteinSchemaInputFieldDefinitionsItem]] = OMIT,
1854
+ fieldsets: typing.Optional[typing.Sequence[str]] = OMIT,
1855
+ include_registry_id_in_chips: typing.Optional[bool] = OMIT,
1856
+ is_containable: typing.Optional[bool] = OMIT,
1857
+ name: typing.Optional[str] = OMIT,
1858
+ system_categories: typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]] = OMIT,
1859
+ system_name: typing.Optional[str] = OMIT,
1860
+ use_registry_id_for_item_display_label: typing.Optional[bool] = OMIT,
1861
+ request_options: typing.Optional[RequestOptions] = None,
1862
+ ) -> AsyncHttpResponse[ProteinSchema]:
1863
+ """
1864
+ Create ProteinSchema.
1865
+
1866
+ Parameters
1867
+ ----------
1868
+ chain_linked_schemas : typing.Sequence[ChainLinkedSchemaInput]
1869
+ Schema mappings for chain labels in the protein format.
1870
+
1871
+ description : str
1872
+ A human-readable description of the schema. At most 1000 characters.
1873
+
1874
+ domain_linked_schemas : typing.Sequence[DomainLinkedSchemaInput]
1875
+ Schema mappings for each domain label in the protein format.
1876
+
1877
+ format_id : str
1878
+ API ID of the protein format that defines the protein schema structure.
1879
+
1880
+ item_id_prefix : str
1881
+
1882
+ organization_id : str
1883
+ The API ID of the organization this schema belongs to. The organization must exist and be accessible to the caller.
1884
+
1885
+ available_registration_naming_options : typing.Optional[typing.Sequence[CreateProteinSchemaInputAvailableRegistrationNamingOptionsItem]]
1886
+
1887
+ display_name : typing.Optional[str]
1888
+ Deprecated. Use name instead.
1889
+
1890
+ field_definitions : typing.Optional[typing.Sequence[CreateProteinSchemaInputFieldDefinitionsItem]]
1891
+ Optional schema field definitions to create on the protein schema.
1892
+
1893
+ fieldsets : typing.Optional[typing.Sequence[str]]
1894
+
1895
+ include_registry_id_in_chips : typing.Optional[bool]
1896
+
1897
+ is_containable : typing.Optional[bool]
1898
+
1899
+ name : typing.Optional[str]
1900
+ The user-facing name of the schema. Must be non-empty after stripping whitespace, at most 255 characters, and unique within the organization.
1901
+
1902
+ system_categories : typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]]
1903
+
1904
+ system_name : typing.Optional[str]
1905
+ The SQL identifier used as the warehouse table name. If not provided, one is auto-generated from the display name. Must match the pattern [a-z_][a-z0-9_$]*, cannot be a reserved table name, cannot start with 'bnch$', and must be unique within the organization.
1906
+
1907
+ use_registry_id_for_item_display_label : typing.Optional[bool]
1908
+
1909
+ request_options : typing.Optional[RequestOptions]
1910
+ Request-specific configuration.
1911
+
1912
+ Returns
1913
+ -------
1914
+ AsyncHttpResponse[ProteinSchema]
1915
+ Created
1916
+ """
1917
+ _response = await self._client_wrapper.httpx_client.request(
1918
+ "api/v3/protein-schema",
1919
+ method="POST",
1920
+ json={
1921
+ "availableRegistrationNamingOptions": available_registration_naming_options,
1922
+ "chainLinkedSchemas": convert_and_respect_annotation_metadata(
1923
+ object_=chain_linked_schemas, annotation=typing.Sequence[ChainLinkedSchemaInput], direction="write"
1924
+ ),
1925
+ "description": description,
1926
+ "displayName": display_name,
1927
+ "domainLinkedSchemas": convert_and_respect_annotation_metadata(
1928
+ object_=domain_linked_schemas,
1929
+ annotation=typing.Sequence[DomainLinkedSchemaInput],
1930
+ direction="write",
1931
+ ),
1932
+ "fieldDefinitions": convert_and_respect_annotation_metadata(
1933
+ object_=field_definitions,
1934
+ annotation=typing.Sequence[CreateProteinSchemaInputFieldDefinitionsItem],
1935
+ direction="write",
1936
+ ),
1937
+ "fieldsets": fieldsets,
1938
+ "formatId": format_id,
1939
+ "includeRegistryIdInChips": include_registry_id_in_chips,
1940
+ "isContainable": is_containable,
1941
+ "itemIdPrefix": item_id_prefix,
1942
+ "name": name,
1943
+ "organizationId": organization_id,
1944
+ "systemCategories": convert_and_respect_annotation_metadata(
1945
+ object_=system_categories,
1946
+ annotation=typing.Sequence[SystemCategoryConfigurationInputBase],
1947
+ direction="write",
1948
+ ),
1949
+ "systemName": system_name,
1950
+ "useRegistryIdForItemDisplayLabel": use_registry_id_for_item_display_label,
1951
+ },
1952
+ request_options=request_options,
1953
+ omit=OMIT,
1954
+ )
1955
+ try:
1956
+ if 200 <= _response.status_code < 300:
1957
+ _data = typing.cast(
1958
+ ProteinSchema,
1959
+ parse_obj_as(
1960
+ type_=ProteinSchema, # type: ignore
1961
+ object_=_response.json(),
1962
+ ),
1963
+ )
1964
+ return AsyncHttpResponse(response=_response, data=_data)
1965
+ if _response.status_code == 400:
1966
+ raise BadRequestError(
1967
+ headers=dict(_response.headers),
1968
+ body=typing.cast(
1969
+ typing.Any,
1970
+ parse_obj_as(
1971
+ type_=typing.Any, # type: ignore
1972
+ object_=_response.json(),
1973
+ ),
1974
+ ),
1975
+ )
1976
+ if _response.status_code == 403:
1977
+ raise ForbiddenError(
1978
+ headers=dict(_response.headers),
1979
+ body=typing.cast(
1980
+ GeneralError,
1981
+ parse_obj_as(
1982
+ type_=GeneralError, # type: ignore
1983
+ object_=_response.json(),
1984
+ ),
1985
+ ),
1986
+ )
1987
+ if _response.status_code == 404:
1988
+ raise NotFoundError(
1989
+ headers=dict(_response.headers),
1990
+ body=typing.cast(
1991
+ GeneralError,
1992
+ parse_obj_as(
1993
+ type_=GeneralError, # type: ignore
1994
+ object_=_response.json(),
1995
+ ),
1996
+ ),
1997
+ )
1998
+ if _response.status_code == 429:
1999
+ raise TooManyRequestsError(
2000
+ headers=dict(_response.headers),
2001
+ body=typing.cast(
2002
+ GeneralError,
2003
+ parse_obj_as(
2004
+ type_=GeneralError, # type: ignore
2005
+ object_=_response.json(),
2006
+ ),
2007
+ ),
2008
+ )
2009
+ if _response.status_code == 500:
2010
+ raise InternalServerError(
2011
+ headers=dict(_response.headers),
2012
+ body=typing.cast(
2013
+ InternalServerErrorBody,
2014
+ parse_obj_as(
2015
+ type_=InternalServerErrorBody, # type: ignore
2016
+ object_=_response.json(),
2017
+ ),
2018
+ ),
2019
+ )
2020
+ _response_json = _response.json()
2021
+ except JSONDecodeError:
2022
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2023
+ except ValidationError as e:
2024
+ raise ParsingError(
2025
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2026
+ )
2027
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2028
+
2029
+ async def list(
2030
+ self,
2031
+ *,
2032
+ next_token: typing.Optional[str] = None,
2033
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
2034
+ page_size: typing.Optional[int] = None,
2035
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
2036
+ request_options: typing.Optional[RequestOptions] = None,
2037
+ ) -> AsyncPager[ProteinSchema, ProteinSchemaPaginatedList]:
2038
+ """
2039
+ List ProteinSchema items.
2040
+
2041
+ Parameters
2042
+ ----------
2043
+ next_token : typing.Optional[str]
2044
+ Token for pagination
2045
+
2046
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
2047
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
2048
+
2049
+ page_size : typing.Optional[int]
2050
+ Number of results to return. Defaults to 50, maximum of 100.
2051
+
2052
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
2053
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
2054
+
2055
+ request_options : typing.Optional[RequestOptions]
2056
+ Request-specific configuration.
2057
+
2058
+ Returns
2059
+ -------
2060
+ AsyncPager[ProteinSchema, ProteinSchemaPaginatedList]
2061
+ OK
2062
+ """
2063
+ _response = await self._client_wrapper.httpx_client.request(
2064
+ "api/v3/protein-schema/items",
2065
+ method="GET",
2066
+ params={
2067
+ "nextToken": next_token,
2068
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
2069
+ "pageSize": page_size,
2070
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
2071
+ },
2072
+ request_options=request_options,
2073
+ )
2074
+ try:
2075
+ if 200 <= _response.status_code < 300:
2076
+ _parsed_response = typing.cast(
2077
+ ProteinSchemaPaginatedList,
2078
+ parse_obj_as(
2079
+ type_=ProteinSchemaPaginatedList, # type: ignore
2080
+ object_=_response.json(),
2081
+ ),
2082
+ )
2083
+ _items = _parsed_response.items
2084
+ _parsed_next = _parsed_response.next_token
2085
+ _has_next = _parsed_next is not None and _parsed_next != ""
2086
+
2087
+ async def _get_next():
2088
+ return await self.list(
2089
+ next_token=_parsed_next,
2090
+ omit=omit,
2091
+ page_size=page_size,
2092
+ returning=returning,
2093
+ request_options=request_options,
2094
+ )
2095
+
2096
+ return AsyncPager(has_next=_has_next, items=_items, get_next=_get_next, response=_parsed_response)
2097
+ if _response.status_code == 400:
2098
+ raise BadRequestError(
2099
+ headers=dict(_response.headers),
2100
+ body=typing.cast(
2101
+ typing.Any,
2102
+ parse_obj_as(
2103
+ type_=typing.Any, # type: ignore
2104
+ object_=_response.json(),
2105
+ ),
2106
+ ),
2107
+ )
2108
+ if _response.status_code == 403:
2109
+ raise ForbiddenError(
2110
+ headers=dict(_response.headers),
2111
+ body=typing.cast(
2112
+ GeneralError,
2113
+ parse_obj_as(
2114
+ type_=GeneralError, # type: ignore
2115
+ object_=_response.json(),
2116
+ ),
2117
+ ),
2118
+ )
2119
+ if _response.status_code == 404:
2120
+ raise NotFoundError(
2121
+ headers=dict(_response.headers),
2122
+ body=typing.cast(
2123
+ GeneralError,
2124
+ parse_obj_as(
2125
+ type_=GeneralError, # type: ignore
2126
+ object_=_response.json(),
2127
+ ),
2128
+ ),
2129
+ )
2130
+ if _response.status_code == 429:
2131
+ raise TooManyRequestsError(
2132
+ headers=dict(_response.headers),
2133
+ body=typing.cast(
2134
+ GeneralError,
2135
+ parse_obj_as(
2136
+ type_=GeneralError, # type: ignore
2137
+ object_=_response.json(),
2138
+ ),
2139
+ ),
2140
+ )
2141
+ if _response.status_code == 500:
2142
+ raise InternalServerError(
2143
+ headers=dict(_response.headers),
2144
+ body=typing.cast(
2145
+ InternalServerErrorBody,
2146
+ parse_obj_as(
2147
+ type_=InternalServerErrorBody, # type: ignore
2148
+ object_=_response.json(),
2149
+ ),
2150
+ ),
2151
+ )
2152
+ _response_json = _response.json()
2153
+ except JSONDecodeError:
2154
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2155
+ except ValidationError as e:
2156
+ raise ParsingError(
2157
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2158
+ )
2159
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2160
+
2161
+ async def get(
2162
+ self,
2163
+ protein_schema_id: str,
2164
+ *,
2165
+ returning: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
2166
+ omit: typing.Optional[typing.Union[str, typing.Sequence[str]]] = None,
2167
+ request_options: typing.Optional[RequestOptions] = None,
2168
+ ) -> AsyncHttpResponse[ProteinSchema]:
2169
+ """
2170
+ Get a single ProteinSchema by ID.
2171
+
2172
+ Parameters
2173
+ ----------
2174
+ protein_schema_id : str
2175
+ ID of the ProteinSchema.
2176
+
2177
+ returning : typing.Optional[typing.Union[str, typing.Sequence[str]]]
2178
+ Comma-separated list of top-level fields to include in each returned item. Cannot overlap with omit.
2179
+
2180
+ omit : typing.Optional[typing.Union[str, typing.Sequence[str]]]
2181
+ Comma-separated list of top-level fields to omit from each returned item. Cannot overlap with returning.
2182
+
2183
+ request_options : typing.Optional[RequestOptions]
2184
+ Request-specific configuration.
2185
+
2186
+ Returns
2187
+ -------
2188
+ AsyncHttpResponse[ProteinSchema]
2189
+ OK
2190
+ """
2191
+ _response = await self._client_wrapper.httpx_client.request(
2192
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}",
2193
+ method="GET",
2194
+ params={
2195
+ "returning": ",".join(map(str, returning)) if isinstance(returning, (list, tuple, set)) else returning,
2196
+ "omit": ",".join(map(str, omit)) if isinstance(omit, (list, tuple, set)) else omit,
2197
+ },
2198
+ request_options=request_options,
2199
+ )
2200
+ try:
2201
+ if 200 <= _response.status_code < 300:
2202
+ _data = typing.cast(
2203
+ ProteinSchema,
2204
+ parse_obj_as(
2205
+ type_=ProteinSchema, # type: ignore
2206
+ object_=_response.json(),
2207
+ ),
2208
+ )
2209
+ return AsyncHttpResponse(response=_response, data=_data)
2210
+ if _response.status_code == 400:
2211
+ raise BadRequestError(
2212
+ headers=dict(_response.headers),
2213
+ body=typing.cast(
2214
+ typing.Any,
2215
+ parse_obj_as(
2216
+ type_=typing.Any, # type: ignore
2217
+ object_=_response.json(),
2218
+ ),
2219
+ ),
2220
+ )
2221
+ if _response.status_code == 403:
2222
+ raise ForbiddenError(
2223
+ headers=dict(_response.headers),
2224
+ body=typing.cast(
2225
+ GeneralError,
2226
+ parse_obj_as(
2227
+ type_=GeneralError, # type: ignore
2228
+ object_=_response.json(),
2229
+ ),
2230
+ ),
2231
+ )
2232
+ if _response.status_code == 404:
2233
+ raise NotFoundError(
2234
+ headers=dict(_response.headers),
2235
+ body=typing.cast(
2236
+ GeneralError,
2237
+ parse_obj_as(
2238
+ type_=GeneralError, # type: ignore
2239
+ object_=_response.json(),
2240
+ ),
2241
+ ),
2242
+ )
2243
+ if _response.status_code == 429:
2244
+ raise TooManyRequestsError(
2245
+ headers=dict(_response.headers),
2246
+ body=typing.cast(
2247
+ GeneralError,
2248
+ parse_obj_as(
2249
+ type_=GeneralError, # type: ignore
2250
+ object_=_response.json(),
2251
+ ),
2252
+ ),
2253
+ )
2254
+ if _response.status_code == 500:
2255
+ raise InternalServerError(
2256
+ headers=dict(_response.headers),
2257
+ body=typing.cast(
2258
+ InternalServerErrorBody,
2259
+ parse_obj_as(
2260
+ type_=InternalServerErrorBody, # type: ignore
2261
+ object_=_response.json(),
2262
+ ),
2263
+ ),
2264
+ )
2265
+ _response_json = _response.json()
2266
+ except JSONDecodeError:
2267
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2268
+ except ValidationError as e:
2269
+ raise ParsingError(
2270
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2271
+ )
2272
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2273
+
2274
+ async def update(
2275
+ self,
2276
+ protein_schema_id: str,
2277
+ *,
2278
+ archive_reason: typing.Optional[str] = OMIT,
2279
+ archived: typing.Optional[bool] = OMIT,
2280
+ available_registration_naming_options: typing.Optional[
2281
+ typing.Sequence[UpdateProteinSchemaInputAvailableRegistrationNamingOptionsItem]
2282
+ ] = OMIT,
2283
+ container_name_template: typing.Optional[ContainerNameTemplateInput] = OMIT,
2284
+ description: typing.Optional[str] = OMIT,
2285
+ display_name: typing.Optional[str] = OMIT,
2286
+ include_registry_id_in_chips: typing.Optional[bool] = OMIT,
2287
+ is_containable: typing.Optional[bool] = OMIT,
2288
+ item_id_prefix: typing.Optional[str] = OMIT,
2289
+ name: typing.Optional[str] = OMIT,
2290
+ name_template: typing.Optional[EntityNameTemplateInput] = OMIT,
2291
+ system_categories: typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]] = OMIT,
2292
+ system_name: typing.Optional[str] = OMIT,
2293
+ use_registry_id_for_item_display_label: typing.Optional[bool] = OMIT,
2294
+ request_options: typing.Optional[RequestOptions] = None,
2295
+ ) -> AsyncHttpResponse[ProteinSchema]:
2296
+ """
2297
+ Update ProteinSchema.
2298
+
2299
+ Parameters
2300
+ ----------
2301
+ protein_schema_id : str
2302
+ ID of the ProteinSchema.
2303
+
2304
+ archive_reason : typing.Optional[str]
2305
+
2306
+ archived : typing.Optional[bool]
2307
+
2308
+ available_registration_naming_options : typing.Optional[typing.Sequence[UpdateProteinSchemaInputAvailableRegistrationNamingOptionsItem]]
2309
+
2310
+ container_name_template : typing.Optional[ContainerNameTemplateInput]
2311
+ Replaces all existing container name template parts. Legacy datetimeFormat configurations are not preserved.
2312
+
2313
+ description : typing.Optional[str]
2314
+ Updated description. When provided, must be at most 1000 characters.
2315
+
2316
+ display_name : typing.Optional[str]
2317
+ Deprecated. Use name instead.
2318
+
2319
+ include_registry_id_in_chips : typing.Optional[bool]
2320
+
2321
+ is_containable : typing.Optional[bool]
2322
+
2323
+ item_id_prefix : typing.Optional[str]
2324
+
2325
+ name : typing.Optional[str]
2326
+ Updated user-facing name. When provided, must be non-empty after stripping whitespace, at most 255 characters, and unique within the organization.
2327
+
2328
+ name_template : typing.Optional[EntityNameTemplateInput]
2329
+ Replaces all existing entity name template parts. Legacy datetimeFormat configurations are not preserved. Updating the name template does not automatically modify availableRegistrationNamingOptions — update that field separately if needed.
2330
+
2331
+ system_categories : typing.Optional[typing.Sequence[SystemCategoryConfigurationInputBase]]
2332
+
2333
+ system_name : typing.Optional[str]
2334
+ Updated SQL identifier for the warehouse table name. When provided, must match the pattern [a-z_][a-z0-9_$]*, cannot be a reserved table name, cannot start with 'bnch$', and must be unique within the organization.
2335
+
2336
+ use_registry_id_for_item_display_label : typing.Optional[bool]
2337
+
2338
+ request_options : typing.Optional[RequestOptions]
2339
+ Request-specific configuration.
2340
+
2341
+ Returns
2342
+ -------
2343
+ AsyncHttpResponse[ProteinSchema]
2344
+ OK
2345
+ """
2346
+ _response = await self._client_wrapper.httpx_client.request(
2347
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}",
2348
+ method="PATCH",
2349
+ json={
2350
+ "archiveReason": archive_reason,
2351
+ "archived": archived,
2352
+ "availableRegistrationNamingOptions": available_registration_naming_options,
2353
+ "containerNameTemplate": convert_and_respect_annotation_metadata(
2354
+ object_=container_name_template,
2355
+ annotation=typing.Optional[ContainerNameTemplateInput],
2356
+ direction="write",
2357
+ ),
2358
+ "description": description,
2359
+ "displayName": display_name,
2360
+ "includeRegistryIdInChips": include_registry_id_in_chips,
2361
+ "isContainable": is_containable,
2362
+ "itemIdPrefix": item_id_prefix,
2363
+ "name": name,
2364
+ "nameTemplate": convert_and_respect_annotation_metadata(
2365
+ object_=name_template, annotation=typing.Optional[EntityNameTemplateInput], direction="write"
2366
+ ),
2367
+ "systemCategories": convert_and_respect_annotation_metadata(
2368
+ object_=system_categories,
2369
+ annotation=typing.Sequence[SystemCategoryConfigurationInputBase],
2370
+ direction="write",
2371
+ ),
2372
+ "systemName": system_name,
2373
+ "useRegistryIdForItemDisplayLabel": use_registry_id_for_item_display_label,
2374
+ },
2375
+ headers={
2376
+ "content-type": "application/json",
2377
+ },
2378
+ request_options=request_options,
2379
+ omit=OMIT,
2380
+ )
2381
+ try:
2382
+ if 200 <= _response.status_code < 300:
2383
+ _data = typing.cast(
2384
+ ProteinSchema,
2385
+ parse_obj_as(
2386
+ type_=ProteinSchema, # type: ignore
2387
+ object_=_response.json(),
2388
+ ),
2389
+ )
2390
+ return AsyncHttpResponse(response=_response, data=_data)
2391
+ if _response.status_code == 400:
2392
+ raise BadRequestError(
2393
+ headers=dict(_response.headers),
2394
+ body=typing.cast(
2395
+ typing.Any,
2396
+ parse_obj_as(
2397
+ type_=typing.Any, # type: ignore
2398
+ object_=_response.json(),
2399
+ ),
2400
+ ),
2401
+ )
2402
+ if _response.status_code == 403:
2403
+ raise ForbiddenError(
2404
+ headers=dict(_response.headers),
2405
+ body=typing.cast(
2406
+ GeneralError,
2407
+ parse_obj_as(
2408
+ type_=GeneralError, # type: ignore
2409
+ object_=_response.json(),
2410
+ ),
2411
+ ),
2412
+ )
2413
+ if _response.status_code == 404:
2414
+ raise NotFoundError(
2415
+ headers=dict(_response.headers),
2416
+ body=typing.cast(
2417
+ GeneralError,
2418
+ parse_obj_as(
2419
+ type_=GeneralError, # type: ignore
2420
+ object_=_response.json(),
2421
+ ),
2422
+ ),
2423
+ )
2424
+ if _response.status_code == 429:
2425
+ raise TooManyRequestsError(
2426
+ headers=dict(_response.headers),
2427
+ body=typing.cast(
2428
+ GeneralError,
2429
+ parse_obj_as(
2430
+ type_=GeneralError, # type: ignore
2431
+ object_=_response.json(),
2432
+ ),
2433
+ ),
2434
+ )
2435
+ if _response.status_code == 500:
2436
+ raise InternalServerError(
2437
+ headers=dict(_response.headers),
2438
+ body=typing.cast(
2439
+ InternalServerErrorBody,
2440
+ parse_obj_as(
2441
+ type_=InternalServerErrorBody, # type: ignore
2442
+ object_=_response.json(),
2443
+ ),
2444
+ ),
2445
+ )
2446
+ _response_json = _response.json()
2447
+ except JSONDecodeError:
2448
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2449
+ except ValidationError as e:
2450
+ raise ParsingError(
2451
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2452
+ )
2453
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2454
+
2455
+ async def list_field_definitions(
2456
+ self, protein_schema_id: str, *, request_options: typing.Optional[RequestOptions] = None
2457
+ ) -> AsyncHttpResponse[SchemaFieldDefinitionUnpaginatedList]:
2458
+ """
2459
+ List SchemaFieldDefinition items.
2460
+
2461
+ Parameters
2462
+ ----------
2463
+ protein_schema_id : str
2464
+ ID of the ProteinSchema.
2465
+
2466
+ request_options : typing.Optional[RequestOptions]
2467
+ Request-specific configuration.
2468
+
2469
+ Returns
2470
+ -------
2471
+ AsyncHttpResponse[SchemaFieldDefinitionUnpaginatedList]
2472
+ OK
2473
+ """
2474
+ _response = await self._client_wrapper.httpx_client.request(
2475
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}/field-definitions/items",
2476
+ method="GET",
2477
+ request_options=request_options,
2478
+ )
2479
+ try:
2480
+ if 200 <= _response.status_code < 300:
2481
+ _data = typing.cast(
2482
+ SchemaFieldDefinitionUnpaginatedList,
2483
+ parse_obj_as(
2484
+ type_=SchemaFieldDefinitionUnpaginatedList, # type: ignore
2485
+ object_=_response.json(),
2486
+ ),
2487
+ )
2488
+ return AsyncHttpResponse(response=_response, data=_data)
2489
+ if _response.status_code == 400:
2490
+ raise BadRequestError(
2491
+ headers=dict(_response.headers),
2492
+ body=typing.cast(
2493
+ typing.Any,
2494
+ parse_obj_as(
2495
+ type_=typing.Any, # type: ignore
2496
+ object_=_response.json(),
2497
+ ),
2498
+ ),
2499
+ )
2500
+ if _response.status_code == 403:
2501
+ raise ForbiddenError(
2502
+ headers=dict(_response.headers),
2503
+ body=typing.cast(
2504
+ GeneralError,
2505
+ parse_obj_as(
2506
+ type_=GeneralError, # type: ignore
2507
+ object_=_response.json(),
2508
+ ),
2509
+ ),
2510
+ )
2511
+ if _response.status_code == 404:
2512
+ raise NotFoundError(
2513
+ headers=dict(_response.headers),
2514
+ body=typing.cast(
2515
+ GeneralError,
2516
+ parse_obj_as(
2517
+ type_=GeneralError, # type: ignore
2518
+ object_=_response.json(),
2519
+ ),
2520
+ ),
2521
+ )
2522
+ if _response.status_code == 429:
2523
+ raise TooManyRequestsError(
2524
+ headers=dict(_response.headers),
2525
+ body=typing.cast(
2526
+ GeneralError,
2527
+ parse_obj_as(
2528
+ type_=GeneralError, # type: ignore
2529
+ object_=_response.json(),
2530
+ ),
2531
+ ),
2532
+ )
2533
+ if _response.status_code == 500:
2534
+ raise InternalServerError(
2535
+ headers=dict(_response.headers),
2536
+ body=typing.cast(
2537
+ InternalServerErrorBody,
2538
+ parse_obj_as(
2539
+ type_=InternalServerErrorBody, # type: ignore
2540
+ object_=_response.json(),
2541
+ ),
2542
+ ),
2543
+ )
2544
+ _response_json = _response.json()
2545
+ except JSONDecodeError:
2546
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2547
+ except ValidationError as e:
2548
+ raise ParsingError(
2549
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2550
+ )
2551
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2552
+
2553
+ async def list_fieldsets(
2554
+ self, protein_schema_id: str, *, request_options: typing.Optional[RequestOptions] = None
2555
+ ) -> AsyncHttpResponse[FieldsetUnpaginatedList]:
2556
+ """
2557
+ List Fieldset items.
2558
+
2559
+ Parameters
2560
+ ----------
2561
+ protein_schema_id : str
2562
+ ID of the ProteinSchema.
2563
+
2564
+ request_options : typing.Optional[RequestOptions]
2565
+ Request-specific configuration.
2566
+
2567
+ Returns
2568
+ -------
2569
+ AsyncHttpResponse[FieldsetUnpaginatedList]
2570
+ OK
2571
+ """
2572
+ _response = await self._client_wrapper.httpx_client.request(
2573
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}/fieldsets/items",
2574
+ method="GET",
2575
+ request_options=request_options,
2576
+ )
2577
+ try:
2578
+ if 200 <= _response.status_code < 300:
2579
+ _data = typing.cast(
2580
+ FieldsetUnpaginatedList,
2581
+ parse_obj_as(
2582
+ type_=FieldsetUnpaginatedList, # type: ignore
2583
+ object_=_response.json(),
2584
+ ),
2585
+ )
2586
+ return AsyncHttpResponse(response=_response, data=_data)
2587
+ if _response.status_code == 400:
2588
+ raise BadRequestError(
2589
+ headers=dict(_response.headers),
2590
+ body=typing.cast(
2591
+ typing.Any,
2592
+ parse_obj_as(
2593
+ type_=typing.Any, # type: ignore
2594
+ object_=_response.json(),
2595
+ ),
2596
+ ),
2597
+ )
2598
+ if _response.status_code == 403:
2599
+ raise ForbiddenError(
2600
+ headers=dict(_response.headers),
2601
+ body=typing.cast(
2602
+ GeneralError,
2603
+ parse_obj_as(
2604
+ type_=GeneralError, # type: ignore
2605
+ object_=_response.json(),
2606
+ ),
2607
+ ),
2608
+ )
2609
+ if _response.status_code == 404:
2610
+ raise NotFoundError(
2611
+ headers=dict(_response.headers),
2612
+ body=typing.cast(
2613
+ GeneralError,
2614
+ parse_obj_as(
2615
+ type_=GeneralError, # type: ignore
2616
+ object_=_response.json(),
2617
+ ),
2618
+ ),
2619
+ )
2620
+ if _response.status_code == 429:
2621
+ raise TooManyRequestsError(
2622
+ headers=dict(_response.headers),
2623
+ body=typing.cast(
2624
+ GeneralError,
2625
+ parse_obj_as(
2626
+ type_=GeneralError, # type: ignore
2627
+ object_=_response.json(),
2628
+ ),
2629
+ ),
2630
+ )
2631
+ if _response.status_code == 500:
2632
+ raise InternalServerError(
2633
+ headers=dict(_response.headers),
2634
+ body=typing.cast(
2635
+ InternalServerErrorBody,
2636
+ parse_obj_as(
2637
+ type_=InternalServerErrorBody, # type: ignore
2638
+ object_=_response.json(),
2639
+ ),
2640
+ ),
2641
+ )
2642
+ _response_json = _response.json()
2643
+ except JSONDecodeError:
2644
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2645
+ except ValidationError as e:
2646
+ raise ParsingError(
2647
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2648
+ )
2649
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2650
+
2651
+ async def apply_fieldset(
2652
+ self,
2653
+ protein_schema_id: str,
2654
+ *,
2655
+ fieldset_id: str,
2656
+ acknowledge_warnings: typing.Optional[bool] = OMIT,
2657
+ request_options: typing.Optional[RequestOptions] = None,
2658
+ ) -> AsyncHttpResponse[AsyncTaskLink]:
2659
+ """
2660
+ Apply a fieldset to the schema
2661
+
2662
+ Parameters
2663
+ ----------
2664
+ protein_schema_id : str
2665
+ ID of the ProteinSchema.
2666
+
2667
+ fieldset_id : str
2668
+ The API ID of the fieldset to apply to the schema. The fieldset must exist and be accessible.
2669
+
2670
+ acknowledge_warnings : typing.Optional[bool]
2671
+ If false, operation will only commit if there are no warnings in the output. If true, operation will commit even if there are warnings.
2672
+
2673
+ request_options : typing.Optional[RequestOptions]
2674
+ Request-specific configuration.
2675
+
2676
+ Returns
2677
+ -------
2678
+ AsyncHttpResponse[AsyncTaskLink]
2679
+ Task started
2680
+ """
2681
+ _response = await self._client_wrapper.httpx_client.request(
2682
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}:apply-fieldset",
2683
+ method="POST",
2684
+ json={
2685
+ "acknowledgeWarnings": acknowledge_warnings,
2686
+ "fieldsetId": fieldset_id,
2687
+ },
2688
+ headers={
2689
+ "content-type": "application/json",
2690
+ },
2691
+ request_options=request_options,
2692
+ omit=OMIT,
2693
+ )
2694
+ try:
2695
+ if 200 <= _response.status_code < 300:
2696
+ _data = typing.cast(
2697
+ AsyncTaskLink,
2698
+ parse_obj_as(
2699
+ type_=AsyncTaskLink, # type: ignore
2700
+ object_=_response.json(),
2701
+ ),
2702
+ )
2703
+ return AsyncHttpResponse(response=_response, data=_data)
2704
+ if _response.status_code == 400:
2705
+ raise BadRequestError(
2706
+ headers=dict(_response.headers),
2707
+ body=typing.cast(
2708
+ typing.Any,
2709
+ parse_obj_as(
2710
+ type_=typing.Any, # type: ignore
2711
+ object_=_response.json(),
2712
+ ),
2713
+ ),
2714
+ )
2715
+ if _response.status_code == 403:
2716
+ raise ForbiddenError(
2717
+ headers=dict(_response.headers),
2718
+ body=typing.cast(
2719
+ GeneralError,
2720
+ parse_obj_as(
2721
+ type_=GeneralError, # type: ignore
2722
+ object_=_response.json(),
2723
+ ),
2724
+ ),
2725
+ )
2726
+ if _response.status_code == 404:
2727
+ raise NotFoundError(
2728
+ headers=dict(_response.headers),
2729
+ body=typing.cast(
2730
+ GeneralError,
2731
+ parse_obj_as(
2732
+ type_=GeneralError, # type: ignore
2733
+ object_=_response.json(),
2734
+ ),
2735
+ ),
2736
+ )
2737
+ if _response.status_code == 429:
2738
+ raise TooManyRequestsError(
2739
+ headers=dict(_response.headers),
2740
+ body=typing.cast(
2741
+ GeneralError,
2742
+ parse_obj_as(
2743
+ type_=GeneralError, # type: ignore
2744
+ object_=_response.json(),
2745
+ ),
2746
+ ),
2747
+ )
2748
+ if _response.status_code == 500:
2749
+ raise InternalServerError(
2750
+ headers=dict(_response.headers),
2751
+ body=typing.cast(
2752
+ InternalServerErrorBody,
2753
+ parse_obj_as(
2754
+ type_=InternalServerErrorBody, # type: ignore
2755
+ object_=_response.json(),
2756
+ ),
2757
+ ),
2758
+ )
2759
+ _response_json = _response.json()
2760
+ except JSONDecodeError:
2761
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2762
+ except ValidationError as e:
2763
+ raise ParsingError(
2764
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2765
+ )
2766
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2767
+
2768
+ async def remove_fieldset(
2769
+ self,
2770
+ protein_schema_id: str,
2771
+ *,
2772
+ fieldset_id: str,
2773
+ schema_prefix_replacement: typing.Optional[str] = OMIT,
2774
+ request_options: typing.Optional[RequestOptions] = None,
2775
+ ) -> AsyncHttpResponse[ProteinSchema]:
2776
+ """
2777
+ Remove a fieldset from the schema
2778
+
2779
+ Parameters
2780
+ ----------
2781
+ protein_schema_id : str
2782
+ ID of the ProteinSchema.
2783
+
2784
+ fieldset_id : str
2785
+ The API ID of the fieldset to remove from the schema. The fieldset must exist and be accessible.
2786
+
2787
+ schema_prefix_replacement : typing.Optional[str]
2788
+ If and only if the fieldset being removed sets the schema's prefix, this field must be present to provide a replacement prefix. It is an error to supply this field if the fieldset being removed does not have a prefix.
2789
+
2790
+ request_options : typing.Optional[RequestOptions]
2791
+ Request-specific configuration.
2792
+
2793
+ Returns
2794
+ -------
2795
+ AsyncHttpResponse[ProteinSchema]
2796
+ OK
2797
+ """
2798
+ _response = await self._client_wrapper.httpx_client.request(
2799
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}:remove-fieldset",
2800
+ method="POST",
2801
+ json={
2802
+ "fieldsetId": fieldset_id,
2803
+ "schemaPrefixReplacement": schema_prefix_replacement,
2804
+ },
2805
+ headers={
2806
+ "content-type": "application/json",
2807
+ },
2808
+ request_options=request_options,
2809
+ omit=OMIT,
2810
+ )
2811
+ try:
2812
+ if 200 <= _response.status_code < 300:
2813
+ _data = typing.cast(
2814
+ ProteinSchema,
2815
+ parse_obj_as(
2816
+ type_=ProteinSchema, # type: ignore
2817
+ object_=_response.json(),
2818
+ ),
2819
+ )
2820
+ return AsyncHttpResponse(response=_response, data=_data)
2821
+ if _response.status_code == 400:
2822
+ raise BadRequestError(
2823
+ headers=dict(_response.headers),
2824
+ body=typing.cast(
2825
+ typing.Any,
2826
+ parse_obj_as(
2827
+ type_=typing.Any, # type: ignore
2828
+ object_=_response.json(),
2829
+ ),
2830
+ ),
2831
+ )
2832
+ if _response.status_code == 403:
2833
+ raise ForbiddenError(
2834
+ headers=dict(_response.headers),
2835
+ body=typing.cast(
2836
+ GeneralError,
2837
+ parse_obj_as(
2838
+ type_=GeneralError, # type: ignore
2839
+ object_=_response.json(),
2840
+ ),
2841
+ ),
2842
+ )
2843
+ if _response.status_code == 404:
2844
+ raise NotFoundError(
2845
+ headers=dict(_response.headers),
2846
+ body=typing.cast(
2847
+ GeneralError,
2848
+ parse_obj_as(
2849
+ type_=GeneralError, # type: ignore
2850
+ object_=_response.json(),
2851
+ ),
2852
+ ),
2853
+ )
2854
+ if _response.status_code == 429:
2855
+ raise TooManyRequestsError(
2856
+ headers=dict(_response.headers),
2857
+ body=typing.cast(
2858
+ GeneralError,
2859
+ parse_obj_as(
2860
+ type_=GeneralError, # type: ignore
2861
+ object_=_response.json(),
2862
+ ),
2863
+ ),
2864
+ )
2865
+ if _response.status_code == 500:
2866
+ raise InternalServerError(
2867
+ headers=dict(_response.headers),
2868
+ body=typing.cast(
2869
+ InternalServerErrorBody,
2870
+ parse_obj_as(
2871
+ type_=InternalServerErrorBody, # type: ignore
2872
+ object_=_response.json(),
2873
+ ),
2874
+ ),
2875
+ )
2876
+ _response_json = _response.json()
2877
+ except JSONDecodeError:
2878
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2879
+ except ValidationError as e:
2880
+ raise ParsingError(
2881
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2882
+ )
2883
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2884
+
2885
+ async def set_field_definitions(
2886
+ self,
2887
+ protein_schema_id: str,
2888
+ *,
2889
+ field_definitions: typing.Sequence[ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem],
2890
+ request_options: typing.Optional[RequestOptions] = None,
2891
+ ) -> AsyncHttpResponse[AsyncTaskLink]:
2892
+ """
2893
+ Set field definitions on the schema
2894
+
2895
+ Parameters
2896
+ ----------
2897
+ protein_schema_id : str
2898
+ ID of the ProteinSchema.
2899
+
2900
+ field_definitions : typing.Sequence[ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem]
2901
+
2902
+ request_options : typing.Optional[RequestOptions]
2903
+ Request-specific configuration.
2904
+
2905
+ Returns
2906
+ -------
2907
+ AsyncHttpResponse[AsyncTaskLink]
2908
+ Task started
2909
+ """
2910
+ _response = await self._client_wrapper.httpx_client.request(
2911
+ f"api/v3/protein-schema/{encode_path_param(protein_schema_id)}:set-field-definitions",
2912
+ method="POST",
2913
+ json={
2914
+ "fieldDefinitions": convert_and_respect_annotation_metadata(
2915
+ object_=field_definitions,
2916
+ annotation=typing.Sequence[ProteinSchemaSetFieldDefinitionsInputFieldDefinitionsItem],
2917
+ direction="write",
2918
+ ),
2919
+ },
2920
+ headers={
2921
+ "content-type": "application/json",
2922
+ },
2923
+ request_options=request_options,
2924
+ omit=OMIT,
2925
+ )
2926
+ try:
2927
+ if 200 <= _response.status_code < 300:
2928
+ _data = typing.cast(
2929
+ AsyncTaskLink,
2930
+ parse_obj_as(
2931
+ type_=AsyncTaskLink, # type: ignore
2932
+ object_=_response.json(),
2933
+ ),
2934
+ )
2935
+ return AsyncHttpResponse(response=_response, data=_data)
2936
+ if _response.status_code == 400:
2937
+ raise BadRequestError(
2938
+ headers=dict(_response.headers),
2939
+ body=typing.cast(
2940
+ typing.Any,
2941
+ parse_obj_as(
2942
+ type_=typing.Any, # type: ignore
2943
+ object_=_response.json(),
2944
+ ),
2945
+ ),
2946
+ )
2947
+ if _response.status_code == 403:
2948
+ raise ForbiddenError(
2949
+ headers=dict(_response.headers),
2950
+ body=typing.cast(
2951
+ GeneralError,
2952
+ parse_obj_as(
2953
+ type_=GeneralError, # type: ignore
2954
+ object_=_response.json(),
2955
+ ),
2956
+ ),
2957
+ )
2958
+ if _response.status_code == 404:
2959
+ raise NotFoundError(
2960
+ headers=dict(_response.headers),
2961
+ body=typing.cast(
2962
+ GeneralError,
2963
+ parse_obj_as(
2964
+ type_=GeneralError, # type: ignore
2965
+ object_=_response.json(),
2966
+ ),
2967
+ ),
2968
+ )
2969
+ if _response.status_code == 429:
2970
+ raise TooManyRequestsError(
2971
+ headers=dict(_response.headers),
2972
+ body=typing.cast(
2973
+ GeneralError,
2974
+ parse_obj_as(
2975
+ type_=GeneralError, # type: ignore
2976
+ object_=_response.json(),
2977
+ ),
2978
+ ),
2979
+ )
2980
+ if _response.status_code == 500:
2981
+ raise InternalServerError(
2982
+ headers=dict(_response.headers),
2983
+ body=typing.cast(
2984
+ InternalServerErrorBody,
2985
+ parse_obj_as(
2986
+ type_=InternalServerErrorBody, # type: ignore
2987
+ object_=_response.json(),
2988
+ ),
2989
+ ),
2990
+ )
2991
+ _response_json = _response.json()
2992
+ except JSONDecodeError:
2993
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
2994
+ except ValidationError as e:
2995
+ raise ParsingError(
2996
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
2997
+ )
2998
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
2999
+
3000
+ async def batch_create(
3001
+ self,
3002
+ *,
3003
+ items: typing.Sequence[CreateProteinSchemaInput],
3004
+ request_options: typing.Optional[RequestOptions] = None,
3005
+ ) -> AsyncHttpResponse[BatchCreateProteinSchemaResponse]:
3006
+ """
3007
+ Batch create ProteinSchema synchronously in one transaction. Maximum 25 items per request.
3008
+
3009
+ Parameters
3010
+ ----------
3011
+ items : typing.Sequence[CreateProteinSchemaInput]
3012
+
3013
+ request_options : typing.Optional[RequestOptions]
3014
+ Request-specific configuration.
3015
+
3016
+ Returns
3017
+ -------
3018
+ AsyncHttpResponse[BatchCreateProteinSchemaResponse]
3019
+ Created
3020
+ """
3021
+ _response = await self._client_wrapper.httpx_client.request(
3022
+ "api/v3/protein-schema:batch-create",
3023
+ method="POST",
3024
+ json={
3025
+ "items": convert_and_respect_annotation_metadata(
3026
+ object_=items, annotation=typing.Sequence[CreateProteinSchemaInput], direction="write"
3027
+ ),
3028
+ },
3029
+ headers={
3030
+ "content-type": "application/json",
3031
+ },
3032
+ request_options=request_options,
3033
+ omit=OMIT,
3034
+ )
3035
+ try:
3036
+ if 200 <= _response.status_code < 300:
3037
+ _data = typing.cast(
3038
+ BatchCreateProteinSchemaResponse,
3039
+ parse_obj_as(
3040
+ type_=BatchCreateProteinSchemaResponse, # type: ignore
3041
+ object_=_response.json(),
3042
+ ),
3043
+ )
3044
+ return AsyncHttpResponse(response=_response, data=_data)
3045
+ if _response.status_code == 400:
3046
+ raise BadRequestError(
3047
+ headers=dict(_response.headers),
3048
+ body=typing.cast(
3049
+ typing.Any,
3050
+ parse_obj_as(
3051
+ type_=typing.Any, # type: ignore
3052
+ object_=_response.json(),
3053
+ ),
3054
+ ),
3055
+ )
3056
+ if _response.status_code == 403:
3057
+ raise ForbiddenError(
3058
+ headers=dict(_response.headers),
3059
+ body=typing.cast(
3060
+ GeneralError,
3061
+ parse_obj_as(
3062
+ type_=GeneralError, # type: ignore
3063
+ object_=_response.json(),
3064
+ ),
3065
+ ),
3066
+ )
3067
+ if _response.status_code == 404:
3068
+ raise NotFoundError(
3069
+ headers=dict(_response.headers),
3070
+ body=typing.cast(
3071
+ GeneralError,
3072
+ parse_obj_as(
3073
+ type_=GeneralError, # type: ignore
3074
+ object_=_response.json(),
3075
+ ),
3076
+ ),
3077
+ )
3078
+ if _response.status_code == 429:
3079
+ raise TooManyRequestsError(
3080
+ headers=dict(_response.headers),
3081
+ body=typing.cast(
3082
+ GeneralError,
3083
+ parse_obj_as(
3084
+ type_=GeneralError, # type: ignore
3085
+ object_=_response.json(),
3086
+ ),
3087
+ ),
3088
+ )
3089
+ if _response.status_code == 500:
3090
+ raise InternalServerError(
3091
+ headers=dict(_response.headers),
3092
+ body=typing.cast(
3093
+ InternalServerErrorBody,
3094
+ parse_obj_as(
3095
+ type_=InternalServerErrorBody, # type: ignore
3096
+ object_=_response.json(),
3097
+ ),
3098
+ ),
3099
+ )
3100
+ _response_json = _response.json()
3101
+ except JSONDecodeError:
3102
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
3103
+ except ValidationError as e:
3104
+ raise ParsingError(
3105
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
3106
+ )
3107
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
3108
+
3109
+ async def batch_update(
3110
+ self,
3111
+ *,
3112
+ items: typing.Sequence[UpdateProteinSchemaInputWithPathParams],
3113
+ request_options: typing.Optional[RequestOptions] = None,
3114
+ ) -> AsyncHttpResponse[BatchUpdateProteinSchemaResponse]:
3115
+ """
3116
+ Batch update ProteinSchema synchronously in one transaction. Maximum 25 items per request.
3117
+
3118
+ Parameters
3119
+ ----------
3120
+ items : typing.Sequence[UpdateProteinSchemaInputWithPathParams]
3121
+
3122
+ request_options : typing.Optional[RequestOptions]
3123
+ Request-specific configuration.
3124
+
3125
+ Returns
3126
+ -------
3127
+ AsyncHttpResponse[BatchUpdateProteinSchemaResponse]
3128
+ OK
3129
+ """
3130
+ _response = await self._client_wrapper.httpx_client.request(
3131
+ "api/v3/protein-schema:batch-update",
3132
+ method="PATCH",
3133
+ json={
3134
+ "items": convert_and_respect_annotation_metadata(
3135
+ object_=items, annotation=typing.Sequence[UpdateProteinSchemaInputWithPathParams], direction="write"
3136
+ ),
3137
+ },
3138
+ headers={
3139
+ "content-type": "application/json",
3140
+ },
3141
+ request_options=request_options,
3142
+ omit=OMIT,
3143
+ )
3144
+ try:
3145
+ if 200 <= _response.status_code < 300:
3146
+ _data = typing.cast(
3147
+ BatchUpdateProteinSchemaResponse,
3148
+ parse_obj_as(
3149
+ type_=BatchUpdateProteinSchemaResponse, # type: ignore
3150
+ object_=_response.json(),
3151
+ ),
3152
+ )
3153
+ return AsyncHttpResponse(response=_response, data=_data)
3154
+ if _response.status_code == 400:
3155
+ raise BadRequestError(
3156
+ headers=dict(_response.headers),
3157
+ body=typing.cast(
3158
+ typing.Any,
3159
+ parse_obj_as(
3160
+ type_=typing.Any, # type: ignore
3161
+ object_=_response.json(),
3162
+ ),
3163
+ ),
3164
+ )
3165
+ if _response.status_code == 403:
3166
+ raise ForbiddenError(
3167
+ headers=dict(_response.headers),
3168
+ body=typing.cast(
3169
+ GeneralError,
3170
+ parse_obj_as(
3171
+ type_=GeneralError, # type: ignore
3172
+ object_=_response.json(),
3173
+ ),
3174
+ ),
3175
+ )
3176
+ if _response.status_code == 404:
3177
+ raise NotFoundError(
3178
+ headers=dict(_response.headers),
3179
+ body=typing.cast(
3180
+ GeneralError,
3181
+ parse_obj_as(
3182
+ type_=GeneralError, # type: ignore
3183
+ object_=_response.json(),
3184
+ ),
3185
+ ),
3186
+ )
3187
+ if _response.status_code == 429:
3188
+ raise TooManyRequestsError(
3189
+ headers=dict(_response.headers),
3190
+ body=typing.cast(
3191
+ GeneralError,
3192
+ parse_obj_as(
3193
+ type_=GeneralError, # type: ignore
3194
+ object_=_response.json(),
3195
+ ),
3196
+ ),
3197
+ )
3198
+ if _response.status_code == 500:
3199
+ raise InternalServerError(
3200
+ headers=dict(_response.headers),
3201
+ body=typing.cast(
3202
+ InternalServerErrorBody,
3203
+ parse_obj_as(
3204
+ type_=InternalServerErrorBody, # type: ignore
3205
+ object_=_response.json(),
3206
+ ),
3207
+ ),
3208
+ )
3209
+ _response_json = _response.json()
3210
+ except JSONDecodeError:
3211
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
3212
+ except ValidationError as e:
3213
+ raise ParsingError(
3214
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
3215
+ )
3216
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
3217
+
3218
+ async def bulk_create(
3219
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
3220
+ ) -> AsyncHttpResponse[AsyncTaskLink]:
3221
+ """
3222
+ Bulk create ProteinSchema.
3223
+
3224
+ Parameters
3225
+ ----------
3226
+ file_id : str
3227
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
3228
+
3229
+ request_options : typing.Optional[RequestOptions]
3230
+ Request-specific configuration.
3231
+
3232
+ Returns
3233
+ -------
3234
+ AsyncHttpResponse[AsyncTaskLink]
3235
+ Task started
3236
+ """
3237
+ _response = await self._client_wrapper.httpx_client.request(
3238
+ "api/v3/protein-schema:bulk-create",
3239
+ method="POST",
3240
+ json={
3241
+ "fileId": file_id,
3242
+ },
3243
+ request_options=request_options,
3244
+ omit=OMIT,
3245
+ )
3246
+ try:
3247
+ if 200 <= _response.status_code < 300:
3248
+ _data = typing.cast(
3249
+ AsyncTaskLink,
3250
+ parse_obj_as(
3251
+ type_=AsyncTaskLink, # type: ignore
3252
+ object_=_response.json(),
3253
+ ),
3254
+ )
3255
+ return AsyncHttpResponse(response=_response, data=_data)
3256
+ if _response.status_code == 400:
3257
+ raise BadRequestError(
3258
+ headers=dict(_response.headers),
3259
+ body=typing.cast(
3260
+ typing.Any,
3261
+ parse_obj_as(
3262
+ type_=typing.Any, # type: ignore
3263
+ object_=_response.json(),
3264
+ ),
3265
+ ),
3266
+ )
3267
+ if _response.status_code == 403:
3268
+ raise ForbiddenError(
3269
+ headers=dict(_response.headers),
3270
+ body=typing.cast(
3271
+ GeneralError,
3272
+ parse_obj_as(
3273
+ type_=GeneralError, # type: ignore
3274
+ object_=_response.json(),
3275
+ ),
3276
+ ),
3277
+ )
3278
+ if _response.status_code == 404:
3279
+ raise NotFoundError(
3280
+ headers=dict(_response.headers),
3281
+ body=typing.cast(
3282
+ GeneralError,
3283
+ parse_obj_as(
3284
+ type_=GeneralError, # type: ignore
3285
+ object_=_response.json(),
3286
+ ),
3287
+ ),
3288
+ )
3289
+ if _response.status_code == 429:
3290
+ raise TooManyRequestsError(
3291
+ headers=dict(_response.headers),
3292
+ body=typing.cast(
3293
+ GeneralError,
3294
+ parse_obj_as(
3295
+ type_=GeneralError, # type: ignore
3296
+ object_=_response.json(),
3297
+ ),
3298
+ ),
3299
+ )
3300
+ if _response.status_code == 500:
3301
+ raise InternalServerError(
3302
+ headers=dict(_response.headers),
3303
+ body=typing.cast(
3304
+ InternalServerErrorBody,
3305
+ parse_obj_as(
3306
+ type_=InternalServerErrorBody, # type: ignore
3307
+ object_=_response.json(),
3308
+ ),
3309
+ ),
3310
+ )
3311
+ _response_json = _response.json()
3312
+ except JSONDecodeError:
3313
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
3314
+ except ValidationError as e:
3315
+ raise ParsingError(
3316
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
3317
+ )
3318
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
3319
+
3320
+ async def bulk_update(
3321
+ self, *, file_id: str, request_options: typing.Optional[RequestOptions] = None
3322
+ ) -> AsyncHttpResponse[AsyncTaskLink]:
3323
+ """
3324
+ Bulk update ProteinSchema.
3325
+
3326
+ Parameters
3327
+ ----------
3328
+ file_id : str
3329
+ The API ID of the scratch file (`scrfile_XXXXXXXX`) containing the items to import. The referenced file must be a scratch file whose upload has completed successfully.
3330
+
3331
+ request_options : typing.Optional[RequestOptions]
3332
+ Request-specific configuration.
3333
+
3334
+ Returns
3335
+ -------
3336
+ AsyncHttpResponse[AsyncTaskLink]
3337
+ Task started
3338
+ """
3339
+ _response = await self._client_wrapper.httpx_client.request(
3340
+ "api/v3/protein-schema:bulk-update",
3341
+ method="PATCH",
3342
+ json={
3343
+ "fileId": file_id,
3344
+ },
3345
+ request_options=request_options,
3346
+ omit=OMIT,
3347
+ )
3348
+ try:
3349
+ if 200 <= _response.status_code < 300:
3350
+ _data = typing.cast(
3351
+ AsyncTaskLink,
3352
+ parse_obj_as(
3353
+ type_=AsyncTaskLink, # type: ignore
3354
+ object_=_response.json(),
3355
+ ),
3356
+ )
3357
+ return AsyncHttpResponse(response=_response, data=_data)
3358
+ if _response.status_code == 400:
3359
+ raise BadRequestError(
3360
+ headers=dict(_response.headers),
3361
+ body=typing.cast(
3362
+ typing.Any,
3363
+ parse_obj_as(
3364
+ type_=typing.Any, # type: ignore
3365
+ object_=_response.json(),
3366
+ ),
3367
+ ),
3368
+ )
3369
+ if _response.status_code == 403:
3370
+ raise ForbiddenError(
3371
+ headers=dict(_response.headers),
3372
+ body=typing.cast(
3373
+ GeneralError,
3374
+ parse_obj_as(
3375
+ type_=GeneralError, # type: ignore
3376
+ object_=_response.json(),
3377
+ ),
3378
+ ),
3379
+ )
3380
+ if _response.status_code == 404:
3381
+ raise NotFoundError(
3382
+ headers=dict(_response.headers),
3383
+ body=typing.cast(
3384
+ GeneralError,
3385
+ parse_obj_as(
3386
+ type_=GeneralError, # type: ignore
3387
+ object_=_response.json(),
3388
+ ),
3389
+ ),
3390
+ )
3391
+ if _response.status_code == 429:
3392
+ raise TooManyRequestsError(
3393
+ headers=dict(_response.headers),
3394
+ body=typing.cast(
3395
+ GeneralError,
3396
+ parse_obj_as(
3397
+ type_=GeneralError, # type: ignore
3398
+ object_=_response.json(),
3399
+ ),
3400
+ ),
3401
+ )
3402
+ if _response.status_code == 500:
3403
+ raise InternalServerError(
3404
+ headers=dict(_response.headers),
3405
+ body=typing.cast(
3406
+ InternalServerErrorBody,
3407
+ parse_obj_as(
3408
+ type_=InternalServerErrorBody, # type: ignore
3409
+ object_=_response.json(),
3410
+ ),
3411
+ ),
3412
+ )
3413
+ _response_json = _response.json()
3414
+ except JSONDecodeError:
3415
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
3416
+ except ValidationError as e:
3417
+ raise ParsingError(
3418
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
3419
+ )
3420
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
3421
+
3422
+ async def get_task_for_apply_fieldset(
3423
+ self, task_id: str, *, request_options: typing.Optional[RequestOptions] = None
3424
+ ) -> AsyncHttpResponse[GetTaskForApplyFieldsetProteinSchemaResponse]:
3425
+ """
3426
+ Poll status for Apply a fieldset to the schema.
3427
+
3428
+ Parameters
3429
+ ----------
3430
+ task_id : str
3431
+ ID of the asynchronous task to poll.
3432
+
3433
+ request_options : typing.Optional[RequestOptions]
3434
+ Request-specific configuration.
3435
+
3436
+ Returns
3437
+ -------
3438
+ AsyncHttpResponse[GetTaskForApplyFieldsetProteinSchemaResponse]
3439
+ OK
3440
+ """
3441
+ _response = await self._client_wrapper.httpx_client.request(
3442
+ f"api/v3/tasks/protein-schema/apply-fieldset/{encode_path_param(task_id)}",
3443
+ method="GET",
3444
+ request_options=request_options,
3445
+ )
3446
+ try:
3447
+ if 200 <= _response.status_code < 300:
3448
+ _data = typing.cast(
3449
+ GetTaskForApplyFieldsetProteinSchemaResponse,
3450
+ parse_obj_as(
3451
+ type_=GetTaskForApplyFieldsetProteinSchemaResponse, # type: ignore
3452
+ object_=_response.json(),
3453
+ ),
3454
+ )
3455
+ return AsyncHttpResponse(response=_response, data=_data)
3456
+ if _response.status_code == 400:
3457
+ raise BadRequestError(
3458
+ headers=dict(_response.headers),
3459
+ body=typing.cast(
3460
+ typing.Any,
3461
+ parse_obj_as(
3462
+ type_=typing.Any, # type: ignore
3463
+ object_=_response.json(),
3464
+ ),
3465
+ ),
3466
+ )
3467
+ if _response.status_code == 403:
3468
+ raise ForbiddenError(
3469
+ headers=dict(_response.headers),
3470
+ body=typing.cast(
3471
+ GeneralError,
3472
+ parse_obj_as(
3473
+ type_=GeneralError, # type: ignore
3474
+ object_=_response.json(),
3475
+ ),
3476
+ ),
3477
+ )
3478
+ if _response.status_code == 404:
3479
+ raise NotFoundError(
3480
+ headers=dict(_response.headers),
3481
+ body=typing.cast(
3482
+ GeneralError,
3483
+ parse_obj_as(
3484
+ type_=GeneralError, # type: ignore
3485
+ object_=_response.json(),
3486
+ ),
3487
+ ),
3488
+ )
3489
+ if _response.status_code == 429:
3490
+ raise TooManyRequestsError(
3491
+ headers=dict(_response.headers),
3492
+ body=typing.cast(
3493
+ GeneralError,
3494
+ parse_obj_as(
3495
+ type_=GeneralError, # type: ignore
3496
+ object_=_response.json(),
3497
+ ),
3498
+ ),
3499
+ )
3500
+ if _response.status_code == 500:
3501
+ raise InternalServerError(
3502
+ headers=dict(_response.headers),
3503
+ body=typing.cast(
3504
+ InternalServerErrorBody,
3505
+ parse_obj_as(
3506
+ type_=InternalServerErrorBody, # type: ignore
3507
+ object_=_response.json(),
3508
+ ),
3509
+ ),
3510
+ )
3511
+ _response_json = _response.json()
3512
+ except JSONDecodeError:
3513
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
3514
+ except ValidationError as e:
3515
+ raise ParsingError(
3516
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
3517
+ )
3518
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)
3519
+
3520
+ async def get_task_for_set_field_definitions(
3521
+ self, task_id: str, *, request_options: typing.Optional[RequestOptions] = None
3522
+ ) -> AsyncHttpResponse[GetTaskForSetFieldDefinitionsProteinSchemaResponse]:
3523
+ """
3524
+ Poll status for Set field definitions on the schema.
3525
+
3526
+ Parameters
3527
+ ----------
3528
+ task_id : str
3529
+ ID of the asynchronous task to poll.
3530
+
3531
+ request_options : typing.Optional[RequestOptions]
3532
+ Request-specific configuration.
3533
+
3534
+ Returns
3535
+ -------
3536
+ AsyncHttpResponse[GetTaskForSetFieldDefinitionsProteinSchemaResponse]
3537
+ OK
3538
+ """
3539
+ _response = await self._client_wrapper.httpx_client.request(
3540
+ f"api/v3/tasks/protein-schema/set-field-definitions/{encode_path_param(task_id)}",
3541
+ method="GET",
3542
+ request_options=request_options,
3543
+ )
3544
+ try:
3545
+ if 200 <= _response.status_code < 300:
3546
+ _data = typing.cast(
3547
+ GetTaskForSetFieldDefinitionsProteinSchemaResponse,
3548
+ parse_obj_as(
3549
+ type_=GetTaskForSetFieldDefinitionsProteinSchemaResponse, # type: ignore
3550
+ object_=_response.json(),
3551
+ ),
3552
+ )
3553
+ return AsyncHttpResponse(response=_response, data=_data)
3554
+ if _response.status_code == 400:
3555
+ raise BadRequestError(
3556
+ headers=dict(_response.headers),
3557
+ body=typing.cast(
3558
+ typing.Any,
3559
+ parse_obj_as(
3560
+ type_=typing.Any, # type: ignore
3561
+ object_=_response.json(),
3562
+ ),
3563
+ ),
3564
+ )
3565
+ if _response.status_code == 403:
3566
+ raise ForbiddenError(
3567
+ headers=dict(_response.headers),
3568
+ body=typing.cast(
3569
+ GeneralError,
3570
+ parse_obj_as(
3571
+ type_=GeneralError, # type: ignore
3572
+ object_=_response.json(),
3573
+ ),
3574
+ ),
3575
+ )
3576
+ if _response.status_code == 404:
3577
+ raise NotFoundError(
3578
+ headers=dict(_response.headers),
3579
+ body=typing.cast(
3580
+ GeneralError,
3581
+ parse_obj_as(
3582
+ type_=GeneralError, # type: ignore
3583
+ object_=_response.json(),
3584
+ ),
3585
+ ),
3586
+ )
3587
+ if _response.status_code == 429:
3588
+ raise TooManyRequestsError(
3589
+ headers=dict(_response.headers),
3590
+ body=typing.cast(
3591
+ GeneralError,
3592
+ parse_obj_as(
3593
+ type_=GeneralError, # type: ignore
3594
+ object_=_response.json(),
3595
+ ),
3596
+ ),
3597
+ )
3598
+ if _response.status_code == 500:
3599
+ raise InternalServerError(
3600
+ headers=dict(_response.headers),
3601
+ body=typing.cast(
3602
+ InternalServerErrorBody,
3603
+ parse_obj_as(
3604
+ type_=InternalServerErrorBody, # type: ignore
3605
+ object_=_response.json(),
3606
+ ),
3607
+ ),
3608
+ )
3609
+ _response_json = _response.json()
3610
+ except JSONDecodeError:
3611
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response.text)
3612
+ except ValidationError as e:
3613
+ raise ParsingError(
3614
+ status_code=_response.status_code, headers=dict(_response.headers), body=_response.json(), cause=e
3615
+ )
3616
+ raise ApiError(status_code=_response.status_code, headers=dict(_response.headers), body=_response_json)