OpenREM 1.0.0b2__py3-none-any.whl → 1.0.0b3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (279) hide show
  1. openrem/locale/de/LC_MESSAGES/django.po +1060 -1059
  2. openrem/locale/django.pot +973 -972
  3. openrem/locale/es_MX/LC_MESSAGES/django.po +1049 -1048
  4. openrem/locale/it/LC_MESSAGES/django.po +1044 -1043
  5. openrem/locale/lt/LC_MESSAGES/django.po +989 -988
  6. openrem/locale/nb_NO/LC_MESSAGES/django.po +985 -984
  7. openrem/locale/pt_BR/LC_MESSAGES/django.po +1003 -1002
  8. openrem/manage.py +10 -10
  9. openrem/openremproject/__init__.py +1 -1
  10. openrem/openremproject/local_settings.py.linux +128 -128
  11. openrem/openremproject/local_settings.py.windows +144 -144
  12. openrem/openremproject/local_settings.py.windows-sqlite3 +129 -129
  13. openrem/openremproject/settings.py +278 -278
  14. openrem/openremproject/urls.py +32 -32
  15. openrem/openremproject/wsgi.py.example +28 -28
  16. openrem/remapp/__init__.py +2 -2
  17. openrem/remapp/admin.py +31 -31
  18. openrem/remapp/exports/ct_export.py +780 -753
  19. openrem/remapp/exports/dx_export.py +817 -805
  20. openrem/remapp/exports/export_common.py +931 -951
  21. openrem/remapp/exports/export_common_pandas.py +2422 -0
  22. openrem/remapp/exports/exportviews.py +815 -860
  23. openrem/remapp/exports/mg_csv_nhsbsp.py +292 -292
  24. openrem/remapp/exports/mg_export.py +673 -510
  25. openrem/remapp/exports/nm_export.py +796 -575
  26. openrem/remapp/exports/rf_export.py +1418 -1431
  27. openrem/remapp/extractors/ct_philips.py +424 -414
  28. openrem/remapp/extractors/ct_toshiba.py +2116 -2108
  29. openrem/remapp/extractors/dx.py +1033 -952
  30. openrem/remapp/extractors/extract_common.py +817 -817
  31. openrem/remapp/extractors/import_views.py +426 -426
  32. openrem/remapp/extractors/mam.py +685 -672
  33. openrem/remapp/extractors/nm_image.py +439 -431
  34. openrem/remapp/extractors/ptsizecsv2db.py +368 -368
  35. openrem/remapp/extractors/rdsr.py +667 -654
  36. openrem/remapp/extractors/rdsr_methods.py +1771 -1768
  37. openrem/remapp/extractors/rrdsr_methods.py +630 -622
  38. openrem/remapp/fixtures/openskin_safelist.json +11 -11
  39. openrem/remapp/forms.py +2286 -2277
  40. openrem/remapp/interface/chart_functions.py +2412 -2393
  41. openrem/remapp/interface/mod_filters.py +1241 -1243
  42. openrem/remapp/migrations/0001_initial.py.1-0-upgrade +1043 -1043
  43. openrem/remapp/models.py +3418 -3407
  44. openrem/remapp/netdicom/dicomviews.py +681 -683
  45. openrem/remapp/netdicom/qrscu.py +2646 -2646
  46. openrem/remapp/netdicom/tools.py +134 -134
  47. openrem/remapp/static/css/bootstrap-theme.css +587 -587
  48. openrem/remapp/static/css/bootstrap-theme.min.css +4 -4
  49. openrem/remapp/static/css/bootstrap.css +6800 -6800
  50. openrem/remapp/static/css/bootstrap.min.css +4 -4
  51. openrem/remapp/static/css/datepicker3.css +790 -790
  52. openrem/remapp/static/css/jquery.qtip.min.css +2 -2
  53. openrem/remapp/static/css/openrem-extra.css +442 -442
  54. openrem/remapp/static/css/openrem.css +96 -96
  55. openrem/remapp/static/css/registration.css +34 -34
  56. openrem/remapp/static/fonts/glyphicons-halflings-regular.svg +287 -287
  57. openrem/remapp/static/js/bootstrap-datepicker.js +1671 -1671
  58. openrem/remapp/static/js/bootstrap.js +2363 -2363
  59. openrem/remapp/static/js/bootstrap.min.js +6 -6
  60. openrem/remapp/static/js/charts/chartCommonFunctions.js +75 -75
  61. openrem/remapp/static/js/charts/chartFullScreen.js +41 -41
  62. openrem/remapp/static/js/charts/ctChartAjax.js +331 -331
  63. openrem/remapp/static/js/charts/dxChartAjax.js +290 -290
  64. openrem/remapp/static/js/charts/mgChartAjax.js +144 -144
  65. openrem/remapp/static/js/charts/nmChartAjax.js +64 -64
  66. openrem/remapp/static/js/charts/plotly-2.35.2.min.js +8 -0
  67. openrem/remapp/static/js/charts/rfChartAjax.js +128 -128
  68. openrem/remapp/static/js/chroma.min.js +32 -32
  69. openrem/remapp/static/js/datepicker.js +5 -5
  70. openrem/remapp/static/js/dicom.js +115 -115
  71. openrem/remapp/static/js/django_reverse/reverse.js +13 -13
  72. openrem/remapp/static/js/formatDate.js +7 -7
  73. openrem/remapp/static/js/html5shiv.min.js +8 -8
  74. openrem/remapp/static/js/jquery-1.11.0.min.js +4 -4
  75. openrem/remapp/static/js/npm.js +12 -12
  76. openrem/remapp/static/js/respond.min.js +4 -4
  77. openrem/remapp/static/js/skin-dose-maps/jquery.qtip.min.js +4 -4
  78. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dHUDObject.js +112 -112
  79. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dObject.js +367 -367
  80. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dPersonObject.js +158 -158
  81. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapColourScaleObject.js +153 -153
  82. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapObject.js +367 -367
  83. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping.js +584 -584
  84. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping3d.js +255 -255
  85. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMappingAjax.js +267 -212
  86. openrem/remapp/static/js/skin-dose-maps/three.min.js +835 -835
  87. openrem/remapp/static/js/sorttable.js +495 -495
  88. openrem/remapp/templates/base.html +253 -253
  89. openrem/remapp/templates/registration/changepassword.html +25 -25
  90. openrem/remapp/templates/registration/changepassworddone.html +12 -12
  91. openrem/remapp/templates/registration/login.html +42 -42
  92. openrem/remapp/templates/remapp/backgroundtaskmaximumrows_form.html +29 -29
  93. openrem/remapp/templates/remapp/base.html +1 -1
  94. openrem/remapp/templates/remapp/ctdetail.html +235 -235
  95. openrem/remapp/templates/remapp/ctfiltered.html +310 -310
  96. openrem/remapp/templates/remapp/dicomdeletesettings_form.html +31 -31
  97. openrem/remapp/templates/remapp/dicomqr.html +147 -147
  98. openrem/remapp/templates/remapp/dicomquerydetails.html +83 -83
  99. openrem/remapp/templates/remapp/dicomqueryimages.html +49 -49
  100. openrem/remapp/templates/remapp/dicomqueryseries.html +109 -109
  101. openrem/remapp/templates/remapp/dicomquerysummary.html +48 -48
  102. openrem/remapp/templates/remapp/dicomremoteqr_confirm_delete.html +60 -60
  103. openrem/remapp/templates/remapp/dicomremoteqr_form.html +32 -32
  104. openrem/remapp/templates/remapp/dicomstorescp_confirm_delete.html +53 -53
  105. openrem/remapp/templates/remapp/dicomstorescp_form.html +48 -48
  106. openrem/remapp/templates/remapp/dicomsummary.html +257 -257
  107. openrem/remapp/templates/remapp/displaychartoptions.html +184 -184
  108. openrem/remapp/templates/remapp/displayhomepageoptions.html +57 -57
  109. openrem/remapp/templates/remapp/displayname-count.html +6 -6
  110. openrem/remapp/templates/remapp/displayname-last-date.html +3 -3
  111. openrem/remapp/templates/remapp/displayname-modality.html +86 -105
  112. openrem/remapp/templates/remapp/displayname-skinmap.html +18 -18
  113. openrem/remapp/templates/remapp/displaynameupdate.html +100 -100
  114. openrem/remapp/templates/remapp/displaynameview.html +222 -219
  115. openrem/remapp/templates/remapp/dxdetail.html +176 -176
  116. openrem/remapp/templates/remapp/dxfiltered.html +324 -324
  117. openrem/remapp/templates/remapp/exports-active.html +25 -25
  118. openrem/remapp/templates/remapp/exports-complete.html +35 -35
  119. openrem/remapp/templates/remapp/exports-error.html +26 -26
  120. openrem/remapp/templates/remapp/exports-queue.html +18 -18
  121. openrem/remapp/templates/remapp/exports.html +191 -191
  122. openrem/remapp/templates/remapp/failed_summary_list.html +27 -27
  123. openrem/remapp/templates/remapp/filteredbase.html +162 -162
  124. openrem/remapp/templates/remapp/highdosemetricalertsettings_form.html +76 -76
  125. openrem/remapp/templates/remapp/home-list-modalities.html +94 -94
  126. openrem/remapp/templates/remapp/home.html +202 -202
  127. openrem/remapp/templates/remapp/list_filters.html +24 -24
  128. openrem/remapp/templates/remapp/mgdetail.html +160 -138
  129. openrem/remapp/templates/remapp/mgfiltered.html +311 -311
  130. openrem/remapp/templates/remapp/nmdetail.html +300 -300
  131. openrem/remapp/templates/remapp/nmfiltered.html +255 -255
  132. openrem/remapp/templates/remapp/notpatient.html +190 -190
  133. openrem/remapp/templates/remapp/notpatientindicators_form_base.html +81 -81
  134. openrem/remapp/templates/remapp/notpatientindicatorsid_confirm_delete.html +54 -54
  135. openrem/remapp/templates/remapp/notpatientindicatorsid_form.html +23 -23
  136. openrem/remapp/templates/remapp/notpatientindicatorsname_confirm_delete.html +54 -54
  137. openrem/remapp/templates/remapp/notpatientindicatorsname_form.html +23 -23
  138. openrem/remapp/templates/remapp/notpatientindicatorsname_form_base.html +85 -85
  139. openrem/remapp/templates/remapp/openskinsafelist_add.html +130 -130
  140. openrem/remapp/templates/remapp/openskinsafelist_confirm_delete.html +100 -100
  141. openrem/remapp/templates/remapp/openskinsafelist_form.html +207 -207
  142. openrem/remapp/templates/remapp/patientidsettings_form.html +83 -83
  143. openrem/remapp/templates/remapp/populate_summary_progress.html +83 -83
  144. openrem/remapp/templates/remapp/populate_summary_progress_error.html +36 -36
  145. openrem/remapp/templates/remapp/review_failed_imports.html +157 -157
  146. openrem/remapp/templates/remapp/review_failed_study.html +41 -41
  147. openrem/remapp/templates/remapp/review_studies_delete_button.html +20 -20
  148. openrem/remapp/templates/remapp/review_study.html +19 -19
  149. openrem/remapp/templates/remapp/review_summary_list.html +245 -245
  150. openrem/remapp/templates/remapp/rf_dose_alert_email_template.html +14 -1
  151. openrem/remapp/templates/remapp/rfalertnotificationsview.html +59 -59
  152. openrem/remapp/templates/remapp/rfdetail.html +547 -543
  153. openrem/remapp/templates/remapp/rfdetailbase.html +18 -18
  154. openrem/remapp/templates/remapp/rffiltered.html +404 -404
  155. openrem/remapp/templates/remapp/sizeimports.html +119 -119
  156. openrem/remapp/templates/remapp/sizeprocess.html +96 -96
  157. openrem/remapp/templates/remapp/sizeupload.html +110 -110
  158. openrem/remapp/templates/remapp/skindosemapcalcsettings_form.html +28 -28
  159. openrem/remapp/templates/remapp/standardname-modality.html +69 -69
  160. openrem/remapp/templates/remapp/standardnames_confirm_delete.html +71 -71
  161. openrem/remapp/templates/remapp/standardnames_form.html +87 -87
  162. openrem/remapp/templates/remapp/standardnamesettings_form.html +41 -41
  163. openrem/remapp/templates/remapp/standardnamesrefreshall.html +92 -92
  164. openrem/remapp/templates/remapp/standardnameview.html +103 -103
  165. openrem/remapp/templates/remapp/study_confirm_delete.html +147 -147
  166. openrem/remapp/templates/remapp/task_admin.html +265 -265
  167. openrem/remapp/templates/remapp/tasks.html +76 -76
  168. openrem/remapp/templatetags/formfilters.py +13 -13
  169. openrem/remapp/templatetags/proper_paginate.py +38 -38
  170. openrem/remapp/templatetags/remappduration.py +36 -36
  171. openrem/remapp/templatetags/sigdig.py +38 -38
  172. openrem/remapp/templatetags/sort_class_property_value.py +15 -15
  173. openrem/remapp/templatetags/update_variable.py +20 -20
  174. openrem/remapp/templatetags/url_replace.py +25 -25
  175. openrem/remapp/tests/test_charts_common.py +202 -202
  176. openrem/remapp/tests/test_charts_ct.py +7111 -7111
  177. openrem/remapp/tests/test_charts_dx.py +3513 -3513
  178. openrem/remapp/tests/test_charts_mg.py +1116 -1115
  179. openrem/remapp/tests/test_dcmdatetime.py +189 -189
  180. openrem/remapp/tests/test_dicom_qr.py +2580 -2580
  181. openrem/remapp/tests/test_display_name.py +274 -274
  182. openrem/remapp/tests/test_export_ct_xlsx.py +272 -248
  183. openrem/remapp/tests/test_export_dx_xlsx.py +137 -134
  184. openrem/remapp/tests/test_export_mammo_csv.py +242 -242
  185. openrem/remapp/tests/test_export_rf_xlsx.py +246 -246
  186. openrem/remapp/tests/test_files/DX-Im-DRGEM.dcm +0 -0
  187. openrem/remapp/tests/test_files/MG-RDSR-GEPristina-2D.dcm +0 -0
  188. openrem/remapp/tests/test_files/MG-RDSR-GEPristina-DBT.dcm +0 -0
  189. openrem/remapp/tests/test_files/MG-RDSR-Giotto-DBT.dcm +0 -0
  190. openrem/remapp/tests/test_files/skin_map_alphenix.py +590 -590
  191. openrem/remapp/tests/test_files/skin_map_zee.py +354 -354
  192. openrem/remapp/tests/test_filters_ct.py +321 -321
  193. openrem/remapp/tests/test_filters_dx.py +92 -92
  194. openrem/remapp/tests/test_filters_mammo.py +183 -183
  195. openrem/remapp/tests/test_filters_rf.py +118 -118
  196. openrem/remapp/tests/test_get_values.py +72 -72
  197. openrem/remapp/tests/test_hash_id.py +65 -65
  198. openrem/remapp/tests/test_import_ct_esr_ge.py +3034 -3034
  199. openrem/remapp/tests/test_import_ct_philips_rdsr.py +42 -42
  200. openrem/remapp/tests/test_import_ct_rdsr_multiple.py +256 -256
  201. openrem/remapp/tests/test_import_ct_rdsr_siemens.py +827 -827
  202. openrem/remapp/tests/test_import_ct_rdsr_spectrumdynamics.py +91 -91
  203. openrem/remapp/tests/test_import_ct_rdsr_toshiba_dosecheck.py +67 -67
  204. openrem/remapp/tests/test_import_ct_rdsr_toshiba_multivaluesd.py +33 -33
  205. openrem/remapp/tests/test_import_ct_rdsr_toshiba_pixelmed.py +118 -118
  206. openrem/remapp/tests/test_import_ct_sc_philips.py +44 -44
  207. openrem/remapp/tests/test_import_dual_rdsr.py +110 -110
  208. openrem/remapp/tests/test_import_dx.py +1267 -1191
  209. openrem/remapp/tests/test_import_dx_rdsr.py +1250 -1253
  210. openrem/remapp/tests/test_import_mam.py +438 -438
  211. openrem/remapp/tests/test_import_mg_im_hol_proj.py +46 -46
  212. openrem/remapp/tests/test_import_mg_rdsr.py +586 -586
  213. openrem/remapp/tests/test_import_nm_image.py +420 -420
  214. openrem/remapp/tests/test_import_nm_siemens_rdsr.py +396 -396
  215. openrem/remapp/tests/test_import_px.py +161 -161
  216. openrem/remapp/tests/test_import_rf_rdsr.py +420 -418
  217. openrem/remapp/tests/test_missing_date.py +42 -42
  218. openrem/remapp/tests/test_not_patient.py +60 -60
  219. openrem/remapp/tests/test_openskin.py +272 -272
  220. openrem/remapp/tests/test_patient_id_settings.py +72 -72
  221. openrem/remapp/tests/test_pt_size_import.py +232 -232
  222. openrem/remapp/tests/test_rf_detail.py +113 -113
  223. openrem/remapp/tests/test_rf_high_dose_alert.py +361 -361
  224. openrem/remapp/tools/background.py +361 -361
  225. openrem/remapp/tools/check_standard_name_status.py +47 -0
  226. openrem/remapp/tools/check_uid.py +70 -70
  227. openrem/remapp/tools/dcmdatetime.py +248 -248
  228. openrem/remapp/tools/default_import.py +44 -47
  229. openrem/remapp/tools/get_values.py +230 -230
  230. openrem/remapp/tools/hash_id.py +58 -58
  231. openrem/remapp/tools/make_skin_map.py +448 -406
  232. openrem/remapp/tools/not_patient_indicators.py +72 -72
  233. openrem/remapp/tools/openskin/calc_exp_map.py +173 -173
  234. openrem/remapp/tools/openskin/geomclass.py +475 -475
  235. openrem/remapp/tools/openskin/geomfunc.py +433 -432
  236. openrem/remapp/tools/openskin/skinmap.py +417 -417
  237. openrem/remapp/tools/populate_summary.py +185 -193
  238. openrem/remapp/tools/save_skin_map_structure.py +73 -73
  239. openrem/remapp/tools/send_high_dose_alert_emails.py +238 -207
  240. openrem/remapp/urls.py +456 -448
  241. openrem/remapp/version.py +11 -11
  242. openrem/remapp/views.py +1147 -1052
  243. openrem/remapp/views_admin.py +3876 -3936
  244. openrem/remapp/views_charts_ct.py +2110 -2058
  245. openrem/remapp/views_charts_dx.py +1906 -1836
  246. openrem/remapp/views_charts_mg.py +1349 -1196
  247. openrem/remapp/views_charts_nm.py +535 -535
  248. openrem/remapp/views_charts_rf.py +1219 -1241
  249. openrem/remapp/views_openskin.py +379 -384
  250. openrem/sample-config/openrem-consumer.service +12 -12
  251. openrem/sample-config/openrem-gunicorn.service +13 -13
  252. openrem/sample-config/openrem-server +14 -13
  253. openrem/sample-config/openrem_orthanc_config_linux.lua +454 -454
  254. openrem/sample-config/openrem_orthanc_config_windows.lua +455 -455
  255. openrem/sample-config/queue-init.bat +73 -73
  256. openrem/scripts/openrem_ctphilips.py +25 -25
  257. openrem/scripts/openrem_cttoshiba.py +28 -28
  258. openrem/scripts/openrem_dx.py +22 -22
  259. openrem/scripts/openrem_mg.py +22 -22
  260. openrem/scripts/openrem_nm.py +22 -22
  261. openrem/scripts/openrem_ptsizecsv.py +17 -17
  262. openrem/scripts/openrem_qr.py +12 -12
  263. openrem/scripts/openrem_rdsr.py +25 -25
  264. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/METADATA +39 -29
  265. openrem-1.0.0b3.dist-info/RECORD +379 -0
  266. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/WHEEL +1 -1
  267. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/COPYING-GPLv3 +674 -674
  268. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/LICENSE +22 -22
  269. OpenREM-1.0.0b2.dist-info/RECORD +0 -373
  270. openrem/remapp/static/js/charts/plotly-2.17.1.min.js +0 -8
  271. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ctphilips.py +0 -0
  272. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_cttoshiba.py +0 -0
  273. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_dx.py +0 -0
  274. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_mg.py +0 -0
  275. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_nm.py +0 -0
  276. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ptsizecsv.py +0 -0
  277. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_qr.py +0 -0
  278. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_rdsr.py +0 -0
  279. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/top_level.txt +0 -0
@@ -1,129 +1,129 @@
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- from .settings import *
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-
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- import os
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-
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- # Choose your database and fill in the details below. If testing, you
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- # can use the sqlite3 database as it doesn't require any further configuration
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- # A Windows example path might be: 'C:/Users/myusername/Documents/OpenREM/openrem.db'
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- # Note, forward slashes are used in the config files, even for Windows.
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-
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- DATABASES = {
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- 'default': {
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- 'ENGINE': 'django.db.backends.sqlite3', # Add 'postgresql', 'mysql', 'sqlite3' or 'oracle'.
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- 'NAME': '/home/user/openrem/openrem.db', # Or path to database file if using sqlite3.
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- 'USER': '', # Not used with sqlite3.
15
- 'PASSWORD': '', # Not used with sqlite3.
16
- 'HOST': '', # Set to empty string for localhost. Not used with sqlite3.
17
- 'PORT': '', # Set to empty string for default. Not used with sqlite3.
18
- }
19
- }
20
-
21
-
22
- # Absolute filesystem path to the directory that will hold xlsx and csv
23
- # exports patient size import files
24
- # Linux example: '/var/openrem/media/'
25
- # Windows example: 'C:/Users/myusername/Documents/OpenREM/media/'
26
- MEDIA_ROOT = ''
27
-
28
- # Absolute path to the directory static files should be collected to.
29
- # Don't put anything in this directory yourself; store your static files
30
- # in apps' 'static/' subdirectories and in STATICFILES_DIRS.
31
- # Example: '/home/media/media.lawrence.com/static/'
32
- STATIC_ROOT = ''
33
- JS_REVERSE_OUTPUT_PATH = os.path.join(STATIC_ROOT, 'js', 'django_reverse')
34
-
35
- # You should generate a new secret key. Make this unique, and don't
36
- # share it with anybody. See the docs.
37
- SECRET_KEY = 'hmj#)-$smzqk*=wuz9^a46rex30^$_j$rghp+1#y&i+pys5b@$'
38
-
39
- # Debug mode is now set to False by default. If you need to troubleshoot, can turn it back on here:
40
- # DEBUG = True
41
-
42
- # Set the domain name that people will use to access your OpenREM server.
43
- # This is required if the DEBUG mode is set to False (default)
44
- # Example: '.doseserver.' or '10.23.123.123'. A dot before a name allows subdomains, a dot after allows for FQDN eg
45
- # doseserver.ad.trust.nhs.uk. Alternatively, use '*' to remove this security feature if you handle it in other ways.
46
- ALLOWED_HOSTS = [
47
- '*',
48
- ]
49
-
50
- # If running OpenREM in a virtual directory specify the virtual directory here.
51
- # Eg. if OpenREM is in a virtual directory dms (http://server/dms/), specify 'dms/' below.
52
- # LOGIN_URL (always) should be overridden to include the VIRTUAL_DIRECTORY
53
- VIRTUAL_DIRECTORY = ''
54
-
55
- # Logging configuration
56
- # Set the log file location. The example places the log file in the media directory. Change as required - on linux
57
- # systems you might put these in a subdirectory of /var/log/. If you want all the logs in one file, set the filename
58
- # to be the same for each one.
59
- LOG_ROOT = MEDIA_ROOT
60
- LOG_FILENAME = os.path.join(LOG_ROOT, 'openrem.log')
61
- QR_FILENAME = os.path.join(LOG_ROOT, 'openrem_qr.log')
62
- EXTRACTOR_FILENAME = os.path.join(LOG_ROOT, 'openrem_extractor.log')
63
-
64
- LOGGING['handlers']['file']['filename'] = LOG_FILENAME # General logs
65
- LOGGING['handlers']['qr_file']['filename'] = QR_FILENAME # Query Retrieve SCU logs
66
- LOGGING['handlers']['extractor_file']['filename'] = EXTRACTOR_FILENAME # Extractor logs
67
-
68
- # Set log message format. Options are 'verbose' or 'simple'. Recommend leaving as 'verbose'.
69
- LOGGING['handlers']['file']['formatter'] = 'verbose' # General logs
70
- LOGGING['handlers']['qr_file']['formatter'] = 'verbose' # Query Retrieve SCU logs
71
- LOGGING['handlers']['extractor_file']['formatter'] = 'verbose' # Extractor logs
72
-
73
- # Set the log level. Options are 'DEBUG', 'INFO', 'WARNING', 'ERROR', and 'CRITICAL', with progressively less logging.
74
- LOGGING['loggers']['remapp']['level'] = 'INFO' # General logs
75
- LOGGING['loggers']['remapp.netdicom.qrscu']['level'] = 'INFO' # Query Retrieve SCU logs
76
- LOGGING['loggers']['remapp.extractors']['level'] = 'INFO' # Extractor logs
77
-
78
- # Linux only for now: configure 'rotating' logs so they don't get too big. Remove the '# ' to uncomment. 'LOGGING'
79
- # should be at the start of the line.
80
- # LOGGING['handlers']['file']['class'] = 'logging.handlers.RotatingFileHandler'
81
- # LOGGING['handlers']['file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
82
- # LOGGING['handlers']['file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
83
- # LOGGING['handlers']['qr_file']['class'] = 'logging.handlers.RotatingFileHandler'
84
- # LOGGING['handlers']['qr_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
85
- # LOGGING['handlers']['qr_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
86
- # LOGGING['handlers']['extractor_file']['class'] = 'logging.handlers.RotatingFileHandler'
87
- # LOGGING['handlers']['extractor_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
88
- # LOGGING['handlers']['extractor_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
89
-
90
- # Regionalisation settings
91
- # Date format for exporting data to Excel xlsx files.
92
- # Default in OpenREM is dd/mm/yyyy. Override it by uncommenting and customising below; a full list of codes is
93
- # available at https://msdn.microsoft.com/en-us/library/ee634398.aspx.
94
- # XLSX_DATE = 'mm/dd/yyyy'
95
- # Local time zone for this installation. Choices can be found here:
96
- # http://en.wikipedia.org/wiki/List_of_tz_zones_by_name
97
- # although not all choices may be available on all operating systems.
98
- # In a Windows environment this must be set to your system time zone.
99
- TIME_ZONE = 'Europe/London'
100
- # Language code for this installation. All choices can be found here:
101
- # http://www.i18nguy.com/unicode/language-identifiers.html
102
- LANGUAGE_CODE = 'en-us'
103
-
104
- # Locations of various tools for DICOM RDSR creation from CT images
105
- DCMTK_PATH = 'C:\\Users\\David\\Apps\\dcmtk-3.6.0-win32-i386\\bin'
106
- DCMCONV = os.path.join(DCMTK_PATH, 'dcmconv.exe')
107
- DCMMKDIR = os.path.join(DCMTK_PATH, 'dcmmkdir.exe')
108
- JAVA_EXE = 'C:\\Users\\David\\Apps\\doseUtility\\windows\\jre\\bin\\java.exe'
109
- JAVA_OPTIONS = '-Xms256m -Xmx512m -Xss1m -cp'
110
- PIXELMED_JAR = 'C:\\Users\\David\\Apps\\doseUtility\\pixelmed.jar'
111
- PIXELMED_JAR_OPTIONS = '-Djava.awt.headless=true com.pixelmed.doseocr.OCR -'
112
-
113
- # E-mail server settings - see https://docs.djangoproject.com/en/2.2/topics/email/
114
- EMAIL_HOST = 'localhost'
115
- EMAIL_PORT = 25
116
- EMAIL_HOST_USER = ''
117
- EMAIL_HOST_PASSWORD = ''
118
- EMAIL_USE_TLS = 0 # Use 0 for False, 1 for True
119
- EMAIL_USE_SSL = 0 # Use 0 for False, 1 for True
120
- EMAIL_DOSE_ALERT_SENDER = 'your.alert@email.address'
121
- EMAIL_OPENREM_URL = 'http://your.openrem.server'
122
-
123
- # Ignore the Device Observer UID of these equipment models when creating display name entries during import of DICOM
124
- # RDSR data using the rdsr.py extractor.
125
- # See https://docs.openrem.org/en/latest/i_displaynames.html#ignore-device-obs-uid.
126
- IGNORE_DEVICE_OBSERVER_UID_FOR_THESE_MODELS = ['GE OEC Fluorostar']
127
-
128
- # The following line can run on your OpenREM server to set up a dummy smtp server for testing:
129
- # python -m smtpd -n -c DebuggingServer localhost:25
1
+ from .settings import *
2
+
3
+ import os
4
+
5
+ # Choose your database and fill in the details below. If testing, you
6
+ # can use the sqlite3 database as it doesn't require any further configuration
7
+ # A Windows example path might be: 'C:/Users/myusername/Documents/OpenREM/openrem.db'
8
+ # Note, forward slashes are used in the config files, even for Windows.
9
+
10
+ DATABASES = {
11
+ 'default': {
12
+ 'ENGINE': 'django.db.backends.sqlite3', # Add 'postgresql', 'mysql', 'sqlite3' or 'oracle'.
13
+ 'NAME': '/home/user/openrem/openrem.db', # Or path to database file if using sqlite3.
14
+ 'USER': '', # Not used with sqlite3.
15
+ 'PASSWORD': '', # Not used with sqlite3.
16
+ 'HOST': '', # Set to empty string for localhost. Not used with sqlite3.
17
+ 'PORT': '', # Set to empty string for default. Not used with sqlite3.
18
+ }
19
+ }
20
+
21
+
22
+ # Absolute filesystem path to the directory that will hold xlsx and csv
23
+ # exports patient size import files
24
+ # Linux example: '/var/openrem/media/'
25
+ # Windows example: 'C:/Users/myusername/Documents/OpenREM/media/'
26
+ MEDIA_ROOT = ''
27
+
28
+ # Absolute path to the directory static files should be collected to.
29
+ # Don't put anything in this directory yourself; store your static files
30
+ # in apps' 'static/' subdirectories and in STATICFILES_DIRS.
31
+ # Example: '/home/media/media.lawrence.com/static/'
32
+ STATIC_ROOT = ''
33
+ JS_REVERSE_OUTPUT_PATH = os.path.join(STATIC_ROOT, 'js', 'django_reverse')
34
+
35
+ # You should generate a new secret key. Make this unique, and don't
36
+ # share it with anybody. See the docs.
37
+ SECRET_KEY = 'hmj#)-$smzqk*=wuz9^a46rex30^$_j$rghp+1#y&i+pys5b@$'
38
+
39
+ # Debug mode is now set to False by default. If you need to troubleshoot, can turn it back on here:
40
+ # DEBUG = True
41
+
42
+ # Set the domain name that people will use to access your OpenREM server.
43
+ # This is required if the DEBUG mode is set to False (default)
44
+ # Example: '.doseserver.' or '10.23.123.123'. A dot before a name allows subdomains, a dot after allows for FQDN eg
45
+ # doseserver.ad.trust.nhs.uk. Alternatively, use '*' to remove this security feature if you handle it in other ways.
46
+ ALLOWED_HOSTS = [
47
+ '*',
48
+ ]
49
+
50
+ # If running OpenREM in a virtual directory specify the virtual directory here.
51
+ # Eg. if OpenREM is in a virtual directory dms (http://server/dms/), specify 'dms/' below.
52
+ # LOGIN_URL (always) should be overridden to include the VIRTUAL_DIRECTORY
53
+ VIRTUAL_DIRECTORY = ''
54
+
55
+ # Logging configuration
56
+ # Set the log file location. The example places the log file in the media directory. Change as required - on linux
57
+ # systems you might put these in a subdirectory of /var/log/. If you want all the logs in one file, set the filename
58
+ # to be the same for each one.
59
+ LOG_ROOT = MEDIA_ROOT
60
+ LOG_FILENAME = os.path.join(LOG_ROOT, 'openrem.log')
61
+ QR_FILENAME = os.path.join(LOG_ROOT, 'openrem_qr.log')
62
+ EXTRACTOR_FILENAME = os.path.join(LOG_ROOT, 'openrem_extractor.log')
63
+
64
+ LOGGING['handlers']['file']['filename'] = LOG_FILENAME # General logs
65
+ LOGGING['handlers']['qr_file']['filename'] = QR_FILENAME # Query Retrieve SCU logs
66
+ LOGGING['handlers']['extractor_file']['filename'] = EXTRACTOR_FILENAME # Extractor logs
67
+
68
+ # Set log message format. Options are 'verbose' or 'simple'. Recommend leaving as 'verbose'.
69
+ LOGGING['handlers']['file']['formatter'] = 'verbose' # General logs
70
+ LOGGING['handlers']['qr_file']['formatter'] = 'verbose' # Query Retrieve SCU logs
71
+ LOGGING['handlers']['extractor_file']['formatter'] = 'verbose' # Extractor logs
72
+
73
+ # Set the log level. Options are 'DEBUG', 'INFO', 'WARNING', 'ERROR', and 'CRITICAL', with progressively less logging.
74
+ LOGGING['loggers']['remapp']['level'] = 'INFO' # General logs
75
+ LOGGING['loggers']['remapp.netdicom.qrscu']['level'] = 'INFO' # Query Retrieve SCU logs
76
+ LOGGING['loggers']['remapp.extractors']['level'] = 'INFO' # Extractor logs
77
+
78
+ # Linux only for now: configure 'rotating' logs so they don't get too big. Remove the '# ' to uncomment. 'LOGGING'
79
+ # should be at the start of the line.
80
+ # LOGGING['handlers']['file']['class'] = 'logging.handlers.RotatingFileHandler'
81
+ # LOGGING['handlers']['file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
82
+ # LOGGING['handlers']['file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
83
+ # LOGGING['handlers']['qr_file']['class'] = 'logging.handlers.RotatingFileHandler'
84
+ # LOGGING['handlers']['qr_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
85
+ # LOGGING['handlers']['qr_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
86
+ # LOGGING['handlers']['extractor_file']['class'] = 'logging.handlers.RotatingFileHandler'
87
+ # LOGGING['handlers']['extractor_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
88
+ # LOGGING['handlers']['extractor_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
89
+
90
+ # Regionalisation settings
91
+ # Date format for exporting data to Excel xlsx files.
92
+ # Default in OpenREM is dd/mm/yyyy. Override it by uncommenting and customising below; a full list of codes is
93
+ # available at https://msdn.microsoft.com/en-us/library/ee634398.aspx.
94
+ # XLSX_DATE = 'mm/dd/yyyy'
95
+ # Local time zone for this installation. Choices can be found here:
96
+ # http://en.wikipedia.org/wiki/List_of_tz_zones_by_name
97
+ # although not all choices may be available on all operating systems.
98
+ # In a Windows environment this must be set to your system time zone.
99
+ TIME_ZONE = 'Europe/London'
100
+ # Language code for this installation. All choices can be found here:
101
+ # http://www.i18nguy.com/unicode/language-identifiers.html
102
+ LANGUAGE_CODE = 'en-us'
103
+
104
+ # Locations of various tools for DICOM RDSR creation from CT images
105
+ DCMTK_PATH = 'C:\\Users\\David\\Apps\\dcmtk-3.6.0-win32-i386\\bin'
106
+ DCMCONV = os.path.join(DCMTK_PATH, 'dcmconv.exe')
107
+ DCMMKDIR = os.path.join(DCMTK_PATH, 'dcmmkdir.exe')
108
+ JAVA_EXE = 'C:\\Users\\David\\Apps\\doseUtility\\windows\\jre\\bin\\java.exe'
109
+ JAVA_OPTIONS = '-Xms256m -Xmx512m -Xss1m -cp'
110
+ PIXELMED_JAR = 'C:\\Users\\David\\Apps\\doseUtility\\pixelmed.jar'
111
+ PIXELMED_JAR_OPTIONS = '-Djava.awt.headless=true com.pixelmed.doseocr.OCR -'
112
+
113
+ # E-mail server settings - see https://docs.djangoproject.com/en/2.2/topics/email/
114
+ EMAIL_HOST = 'localhost'
115
+ EMAIL_PORT = 25
116
+ EMAIL_HOST_USER = ''
117
+ EMAIL_HOST_PASSWORD = ''
118
+ EMAIL_USE_TLS = 0 # Use 0 for False, 1 for True
119
+ EMAIL_USE_SSL = 0 # Use 0 for False, 1 for True
120
+ EMAIL_DOSE_ALERT_SENDER = 'your.alert@email.address'
121
+ EMAIL_OPENREM_URL = 'http://your.openrem.server'
122
+
123
+ # Ignore the Device Observer UID of these equipment models when creating display name entries during import of DICOM
124
+ # RDSR data using the rdsr.py extractor.
125
+ # See https://docs.openrem.org/en/latest/i_displaynames.html#ignore-device-obs-uid.
126
+ IGNORE_DEVICE_OBSERVER_UID_FOR_THESE_MODELS = ['GE OEC Fluorostar']
127
+
128
+ # The following line can run on your OpenREM server to set up a dummy smtp server for testing:
129
+ # python -m smtpd -n -c DebuggingServer localhost:25