OpenREM 1.0.0b2__py3-none-any.whl → 1.0.0b3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- openrem/locale/de/LC_MESSAGES/django.po +1060 -1059
- openrem/locale/django.pot +973 -972
- openrem/locale/es_MX/LC_MESSAGES/django.po +1049 -1048
- openrem/locale/it/LC_MESSAGES/django.po +1044 -1043
- openrem/locale/lt/LC_MESSAGES/django.po +989 -988
- openrem/locale/nb_NO/LC_MESSAGES/django.po +985 -984
- openrem/locale/pt_BR/LC_MESSAGES/django.po +1003 -1002
- openrem/manage.py +10 -10
- openrem/openremproject/__init__.py +1 -1
- openrem/openremproject/local_settings.py.linux +128 -128
- openrem/openremproject/local_settings.py.windows +144 -144
- openrem/openremproject/local_settings.py.windows-sqlite3 +129 -129
- openrem/openremproject/settings.py +278 -278
- openrem/openremproject/urls.py +32 -32
- openrem/openremproject/wsgi.py.example +28 -28
- openrem/remapp/__init__.py +2 -2
- openrem/remapp/admin.py +31 -31
- openrem/remapp/exports/ct_export.py +780 -753
- openrem/remapp/exports/dx_export.py +817 -805
- openrem/remapp/exports/export_common.py +931 -951
- openrem/remapp/exports/export_common_pandas.py +2422 -0
- openrem/remapp/exports/exportviews.py +815 -860
- openrem/remapp/exports/mg_csv_nhsbsp.py +292 -292
- openrem/remapp/exports/mg_export.py +673 -510
- openrem/remapp/exports/nm_export.py +796 -575
- openrem/remapp/exports/rf_export.py +1418 -1431
- openrem/remapp/extractors/ct_philips.py +424 -414
- openrem/remapp/extractors/ct_toshiba.py +2116 -2108
- openrem/remapp/extractors/dx.py +1033 -952
- openrem/remapp/extractors/extract_common.py +817 -817
- openrem/remapp/extractors/import_views.py +426 -426
- openrem/remapp/extractors/mam.py +685 -672
- openrem/remapp/extractors/nm_image.py +439 -431
- openrem/remapp/extractors/ptsizecsv2db.py +368 -368
- openrem/remapp/extractors/rdsr.py +667 -654
- openrem/remapp/extractors/rdsr_methods.py +1771 -1768
- openrem/remapp/extractors/rrdsr_methods.py +630 -622
- openrem/remapp/fixtures/openskin_safelist.json +11 -11
- openrem/remapp/forms.py +2286 -2277
- openrem/remapp/interface/chart_functions.py +2412 -2393
- openrem/remapp/interface/mod_filters.py +1241 -1243
- openrem/remapp/migrations/0001_initial.py.1-0-upgrade +1043 -1043
- openrem/remapp/models.py +3418 -3407
- openrem/remapp/netdicom/dicomviews.py +681 -683
- openrem/remapp/netdicom/qrscu.py +2646 -2646
- openrem/remapp/netdicom/tools.py +134 -134
- openrem/remapp/static/css/bootstrap-theme.css +587 -587
- openrem/remapp/static/css/bootstrap-theme.min.css +4 -4
- openrem/remapp/static/css/bootstrap.css +6800 -6800
- openrem/remapp/static/css/bootstrap.min.css +4 -4
- openrem/remapp/static/css/datepicker3.css +790 -790
- openrem/remapp/static/css/jquery.qtip.min.css +2 -2
- openrem/remapp/static/css/openrem-extra.css +442 -442
- openrem/remapp/static/css/openrem.css +96 -96
- openrem/remapp/static/css/registration.css +34 -34
- openrem/remapp/static/fonts/glyphicons-halflings-regular.svg +287 -287
- openrem/remapp/static/js/bootstrap-datepicker.js +1671 -1671
- openrem/remapp/static/js/bootstrap.js +2363 -2363
- openrem/remapp/static/js/bootstrap.min.js +6 -6
- openrem/remapp/static/js/charts/chartCommonFunctions.js +75 -75
- openrem/remapp/static/js/charts/chartFullScreen.js +41 -41
- openrem/remapp/static/js/charts/ctChartAjax.js +331 -331
- openrem/remapp/static/js/charts/dxChartAjax.js +290 -290
- openrem/remapp/static/js/charts/mgChartAjax.js +144 -144
- openrem/remapp/static/js/charts/nmChartAjax.js +64 -64
- openrem/remapp/static/js/charts/plotly-2.35.2.min.js +8 -0
- openrem/remapp/static/js/charts/rfChartAjax.js +128 -128
- openrem/remapp/static/js/chroma.min.js +32 -32
- openrem/remapp/static/js/datepicker.js +5 -5
- openrem/remapp/static/js/dicom.js +115 -115
- openrem/remapp/static/js/django_reverse/reverse.js +13 -13
- openrem/remapp/static/js/formatDate.js +7 -7
- openrem/remapp/static/js/html5shiv.min.js +8 -8
- openrem/remapp/static/js/jquery-1.11.0.min.js +4 -4
- openrem/remapp/static/js/npm.js +12 -12
- openrem/remapp/static/js/respond.min.js +4 -4
- openrem/remapp/static/js/skin-dose-maps/jquery.qtip.min.js +4 -4
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dHUDObject.js +112 -112
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dObject.js +367 -367
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dPersonObject.js +158 -158
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapColourScaleObject.js +153 -153
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapObject.js +367 -367
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping.js +584 -584
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping3d.js +255 -255
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMappingAjax.js +267 -212
- openrem/remapp/static/js/skin-dose-maps/three.min.js +835 -835
- openrem/remapp/static/js/sorttable.js +495 -495
- openrem/remapp/templates/base.html +253 -253
- openrem/remapp/templates/registration/changepassword.html +25 -25
- openrem/remapp/templates/registration/changepassworddone.html +12 -12
- openrem/remapp/templates/registration/login.html +42 -42
- openrem/remapp/templates/remapp/backgroundtaskmaximumrows_form.html +29 -29
- openrem/remapp/templates/remapp/base.html +1 -1
- openrem/remapp/templates/remapp/ctdetail.html +235 -235
- openrem/remapp/templates/remapp/ctfiltered.html +310 -310
- openrem/remapp/templates/remapp/dicomdeletesettings_form.html +31 -31
- openrem/remapp/templates/remapp/dicomqr.html +147 -147
- openrem/remapp/templates/remapp/dicomquerydetails.html +83 -83
- openrem/remapp/templates/remapp/dicomqueryimages.html +49 -49
- openrem/remapp/templates/remapp/dicomqueryseries.html +109 -109
- openrem/remapp/templates/remapp/dicomquerysummary.html +48 -48
- openrem/remapp/templates/remapp/dicomremoteqr_confirm_delete.html +60 -60
- openrem/remapp/templates/remapp/dicomremoteqr_form.html +32 -32
- openrem/remapp/templates/remapp/dicomstorescp_confirm_delete.html +53 -53
- openrem/remapp/templates/remapp/dicomstorescp_form.html +48 -48
- openrem/remapp/templates/remapp/dicomsummary.html +257 -257
- openrem/remapp/templates/remapp/displaychartoptions.html +184 -184
- openrem/remapp/templates/remapp/displayhomepageoptions.html +57 -57
- openrem/remapp/templates/remapp/displayname-count.html +6 -6
- openrem/remapp/templates/remapp/displayname-last-date.html +3 -3
- openrem/remapp/templates/remapp/displayname-modality.html +86 -105
- openrem/remapp/templates/remapp/displayname-skinmap.html +18 -18
- openrem/remapp/templates/remapp/displaynameupdate.html +100 -100
- openrem/remapp/templates/remapp/displaynameview.html +222 -219
- openrem/remapp/templates/remapp/dxdetail.html +176 -176
- openrem/remapp/templates/remapp/dxfiltered.html +324 -324
- openrem/remapp/templates/remapp/exports-active.html +25 -25
- openrem/remapp/templates/remapp/exports-complete.html +35 -35
- openrem/remapp/templates/remapp/exports-error.html +26 -26
- openrem/remapp/templates/remapp/exports-queue.html +18 -18
- openrem/remapp/templates/remapp/exports.html +191 -191
- openrem/remapp/templates/remapp/failed_summary_list.html +27 -27
- openrem/remapp/templates/remapp/filteredbase.html +162 -162
- openrem/remapp/templates/remapp/highdosemetricalertsettings_form.html +76 -76
- openrem/remapp/templates/remapp/home-list-modalities.html +94 -94
- openrem/remapp/templates/remapp/home.html +202 -202
- openrem/remapp/templates/remapp/list_filters.html +24 -24
- openrem/remapp/templates/remapp/mgdetail.html +160 -138
- openrem/remapp/templates/remapp/mgfiltered.html +311 -311
- openrem/remapp/templates/remapp/nmdetail.html +300 -300
- openrem/remapp/templates/remapp/nmfiltered.html +255 -255
- openrem/remapp/templates/remapp/notpatient.html +190 -190
- openrem/remapp/templates/remapp/notpatientindicators_form_base.html +81 -81
- openrem/remapp/templates/remapp/notpatientindicatorsid_confirm_delete.html +54 -54
- openrem/remapp/templates/remapp/notpatientindicatorsid_form.html +23 -23
- openrem/remapp/templates/remapp/notpatientindicatorsname_confirm_delete.html +54 -54
- openrem/remapp/templates/remapp/notpatientindicatorsname_form.html +23 -23
- openrem/remapp/templates/remapp/notpatientindicatorsname_form_base.html +85 -85
- openrem/remapp/templates/remapp/openskinsafelist_add.html +130 -130
- openrem/remapp/templates/remapp/openskinsafelist_confirm_delete.html +100 -100
- openrem/remapp/templates/remapp/openskinsafelist_form.html +207 -207
- openrem/remapp/templates/remapp/patientidsettings_form.html +83 -83
- openrem/remapp/templates/remapp/populate_summary_progress.html +83 -83
- openrem/remapp/templates/remapp/populate_summary_progress_error.html +36 -36
- openrem/remapp/templates/remapp/review_failed_imports.html +157 -157
- openrem/remapp/templates/remapp/review_failed_study.html +41 -41
- openrem/remapp/templates/remapp/review_studies_delete_button.html +20 -20
- openrem/remapp/templates/remapp/review_study.html +19 -19
- openrem/remapp/templates/remapp/review_summary_list.html +245 -245
- openrem/remapp/templates/remapp/rf_dose_alert_email_template.html +14 -1
- openrem/remapp/templates/remapp/rfalertnotificationsview.html +59 -59
- openrem/remapp/templates/remapp/rfdetail.html +547 -543
- openrem/remapp/templates/remapp/rfdetailbase.html +18 -18
- openrem/remapp/templates/remapp/rffiltered.html +404 -404
- openrem/remapp/templates/remapp/sizeimports.html +119 -119
- openrem/remapp/templates/remapp/sizeprocess.html +96 -96
- openrem/remapp/templates/remapp/sizeupload.html +110 -110
- openrem/remapp/templates/remapp/skindosemapcalcsettings_form.html +28 -28
- openrem/remapp/templates/remapp/standardname-modality.html +69 -69
- openrem/remapp/templates/remapp/standardnames_confirm_delete.html +71 -71
- openrem/remapp/templates/remapp/standardnames_form.html +87 -87
- openrem/remapp/templates/remapp/standardnamesettings_form.html +41 -41
- openrem/remapp/templates/remapp/standardnamesrefreshall.html +92 -92
- openrem/remapp/templates/remapp/standardnameview.html +103 -103
- openrem/remapp/templates/remapp/study_confirm_delete.html +147 -147
- openrem/remapp/templates/remapp/task_admin.html +265 -265
- openrem/remapp/templates/remapp/tasks.html +76 -76
- openrem/remapp/templatetags/formfilters.py +13 -13
- openrem/remapp/templatetags/proper_paginate.py +38 -38
- openrem/remapp/templatetags/remappduration.py +36 -36
- openrem/remapp/templatetags/sigdig.py +38 -38
- openrem/remapp/templatetags/sort_class_property_value.py +15 -15
- openrem/remapp/templatetags/update_variable.py +20 -20
- openrem/remapp/templatetags/url_replace.py +25 -25
- openrem/remapp/tests/test_charts_common.py +202 -202
- openrem/remapp/tests/test_charts_ct.py +7111 -7111
- openrem/remapp/tests/test_charts_dx.py +3513 -3513
- openrem/remapp/tests/test_charts_mg.py +1116 -1115
- openrem/remapp/tests/test_dcmdatetime.py +189 -189
- openrem/remapp/tests/test_dicom_qr.py +2580 -2580
- openrem/remapp/tests/test_display_name.py +274 -274
- openrem/remapp/tests/test_export_ct_xlsx.py +272 -248
- openrem/remapp/tests/test_export_dx_xlsx.py +137 -134
- openrem/remapp/tests/test_export_mammo_csv.py +242 -242
- openrem/remapp/tests/test_export_rf_xlsx.py +246 -246
- openrem/remapp/tests/test_files/DX-Im-DRGEM.dcm +0 -0
- openrem/remapp/tests/test_files/MG-RDSR-GEPristina-2D.dcm +0 -0
- openrem/remapp/tests/test_files/MG-RDSR-GEPristina-DBT.dcm +0 -0
- openrem/remapp/tests/test_files/MG-RDSR-Giotto-DBT.dcm +0 -0
- openrem/remapp/tests/test_files/skin_map_alphenix.py +590 -590
- openrem/remapp/tests/test_files/skin_map_zee.py +354 -354
- openrem/remapp/tests/test_filters_ct.py +321 -321
- openrem/remapp/tests/test_filters_dx.py +92 -92
- openrem/remapp/tests/test_filters_mammo.py +183 -183
- openrem/remapp/tests/test_filters_rf.py +118 -118
- openrem/remapp/tests/test_get_values.py +72 -72
- openrem/remapp/tests/test_hash_id.py +65 -65
- openrem/remapp/tests/test_import_ct_esr_ge.py +3034 -3034
- openrem/remapp/tests/test_import_ct_philips_rdsr.py +42 -42
- openrem/remapp/tests/test_import_ct_rdsr_multiple.py +256 -256
- openrem/remapp/tests/test_import_ct_rdsr_siemens.py +827 -827
- openrem/remapp/tests/test_import_ct_rdsr_spectrumdynamics.py +91 -91
- openrem/remapp/tests/test_import_ct_rdsr_toshiba_dosecheck.py +67 -67
- openrem/remapp/tests/test_import_ct_rdsr_toshiba_multivaluesd.py +33 -33
- openrem/remapp/tests/test_import_ct_rdsr_toshiba_pixelmed.py +118 -118
- openrem/remapp/tests/test_import_ct_sc_philips.py +44 -44
- openrem/remapp/tests/test_import_dual_rdsr.py +110 -110
- openrem/remapp/tests/test_import_dx.py +1267 -1191
- openrem/remapp/tests/test_import_dx_rdsr.py +1250 -1253
- openrem/remapp/tests/test_import_mam.py +438 -438
- openrem/remapp/tests/test_import_mg_im_hol_proj.py +46 -46
- openrem/remapp/tests/test_import_mg_rdsr.py +586 -586
- openrem/remapp/tests/test_import_nm_image.py +420 -420
- openrem/remapp/tests/test_import_nm_siemens_rdsr.py +396 -396
- openrem/remapp/tests/test_import_px.py +161 -161
- openrem/remapp/tests/test_import_rf_rdsr.py +420 -418
- openrem/remapp/tests/test_missing_date.py +42 -42
- openrem/remapp/tests/test_not_patient.py +60 -60
- openrem/remapp/tests/test_openskin.py +272 -272
- openrem/remapp/tests/test_patient_id_settings.py +72 -72
- openrem/remapp/tests/test_pt_size_import.py +232 -232
- openrem/remapp/tests/test_rf_detail.py +113 -113
- openrem/remapp/tests/test_rf_high_dose_alert.py +361 -361
- openrem/remapp/tools/background.py +361 -361
- openrem/remapp/tools/check_standard_name_status.py +47 -0
- openrem/remapp/tools/check_uid.py +70 -70
- openrem/remapp/tools/dcmdatetime.py +248 -248
- openrem/remapp/tools/default_import.py +44 -47
- openrem/remapp/tools/get_values.py +230 -230
- openrem/remapp/tools/hash_id.py +58 -58
- openrem/remapp/tools/make_skin_map.py +448 -406
- openrem/remapp/tools/not_patient_indicators.py +72 -72
- openrem/remapp/tools/openskin/calc_exp_map.py +173 -173
- openrem/remapp/tools/openskin/geomclass.py +475 -475
- openrem/remapp/tools/openskin/geomfunc.py +433 -432
- openrem/remapp/tools/openskin/skinmap.py +417 -417
- openrem/remapp/tools/populate_summary.py +185 -193
- openrem/remapp/tools/save_skin_map_structure.py +73 -73
- openrem/remapp/tools/send_high_dose_alert_emails.py +238 -207
- openrem/remapp/urls.py +456 -448
- openrem/remapp/version.py +11 -11
- openrem/remapp/views.py +1147 -1052
- openrem/remapp/views_admin.py +3876 -3936
- openrem/remapp/views_charts_ct.py +2110 -2058
- openrem/remapp/views_charts_dx.py +1906 -1836
- openrem/remapp/views_charts_mg.py +1349 -1196
- openrem/remapp/views_charts_nm.py +535 -535
- openrem/remapp/views_charts_rf.py +1219 -1241
- openrem/remapp/views_openskin.py +379 -384
- openrem/sample-config/openrem-consumer.service +12 -12
- openrem/sample-config/openrem-gunicorn.service +13 -13
- openrem/sample-config/openrem-server +14 -13
- openrem/sample-config/openrem_orthanc_config_linux.lua +454 -454
- openrem/sample-config/openrem_orthanc_config_windows.lua +455 -455
- openrem/sample-config/queue-init.bat +73 -73
- openrem/scripts/openrem_ctphilips.py +25 -25
- openrem/scripts/openrem_cttoshiba.py +28 -28
- openrem/scripts/openrem_dx.py +22 -22
- openrem/scripts/openrem_mg.py +22 -22
- openrem/scripts/openrem_nm.py +22 -22
- openrem/scripts/openrem_ptsizecsv.py +17 -17
- openrem/scripts/openrem_qr.py +12 -12
- openrem/scripts/openrem_rdsr.py +25 -25
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/METADATA +39 -29
- openrem-1.0.0b3.dist-info/RECORD +379 -0
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/WHEEL +1 -1
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/COPYING-GPLv3 +674 -674
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/LICENSE +22 -22
- OpenREM-1.0.0b2.dist-info/RECORD +0 -373
- openrem/remapp/static/js/charts/plotly-2.17.1.min.js +0 -8
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ctphilips.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_cttoshiba.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_dx.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_mg.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_nm.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ptsizecsv.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_qr.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_rdsr.py +0 -0
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/top_level.txt +0 -0
|
@@ -1,129 +1,129 @@
|
|
|
1
|
-
from .settings import *
|
|
2
|
-
|
|
3
|
-
import os
|
|
4
|
-
|
|
5
|
-
# Choose your database and fill in the details below. If testing, you
|
|
6
|
-
# can use the sqlite3 database as it doesn't require any further configuration
|
|
7
|
-
# A Windows example path might be: 'C:/Users/myusername/Documents/OpenREM/openrem.db'
|
|
8
|
-
# Note, forward slashes are used in the config files, even for Windows.
|
|
9
|
-
|
|
10
|
-
DATABASES = {
|
|
11
|
-
'default': {
|
|
12
|
-
'ENGINE': 'django.db.backends.sqlite3', # Add 'postgresql', 'mysql', 'sqlite3' or 'oracle'.
|
|
13
|
-
'NAME': '/home/user/openrem/openrem.db', # Or path to database file if using sqlite3.
|
|
14
|
-
'USER': '', # Not used with sqlite3.
|
|
15
|
-
'PASSWORD': '', # Not used with sqlite3.
|
|
16
|
-
'HOST': '', # Set to empty string for localhost. Not used with sqlite3.
|
|
17
|
-
'PORT': '', # Set to empty string for default. Not used with sqlite3.
|
|
18
|
-
}
|
|
19
|
-
}
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
# Absolute filesystem path to the directory that will hold xlsx and csv
|
|
23
|
-
# exports patient size import files
|
|
24
|
-
# Linux example: '/var/openrem/media/'
|
|
25
|
-
# Windows example: 'C:/Users/myusername/Documents/OpenREM/media/'
|
|
26
|
-
MEDIA_ROOT = ''
|
|
27
|
-
|
|
28
|
-
# Absolute path to the directory static files should be collected to.
|
|
29
|
-
# Don't put anything in this directory yourself; store your static files
|
|
30
|
-
# in apps' 'static/' subdirectories and in STATICFILES_DIRS.
|
|
31
|
-
# Example: '/home/media/media.lawrence.com/static/'
|
|
32
|
-
STATIC_ROOT = ''
|
|
33
|
-
JS_REVERSE_OUTPUT_PATH = os.path.join(STATIC_ROOT, 'js', 'django_reverse')
|
|
34
|
-
|
|
35
|
-
# You should generate a new secret key. Make this unique, and don't
|
|
36
|
-
# share it with anybody. See the docs.
|
|
37
|
-
SECRET_KEY = 'hmj#)-$smzqk*=wuz9^a46rex30^$_j$rghp+1#y&i+pys5b@$'
|
|
38
|
-
|
|
39
|
-
# Debug mode is now set to False by default. If you need to troubleshoot, can turn it back on here:
|
|
40
|
-
# DEBUG = True
|
|
41
|
-
|
|
42
|
-
# Set the domain name that people will use to access your OpenREM server.
|
|
43
|
-
# This is required if the DEBUG mode is set to False (default)
|
|
44
|
-
# Example: '.doseserver.' or '10.23.123.123'. A dot before a name allows subdomains, a dot after allows for FQDN eg
|
|
45
|
-
# doseserver.ad.trust.nhs.uk. Alternatively, use '*' to remove this security feature if you handle it in other ways.
|
|
46
|
-
ALLOWED_HOSTS = [
|
|
47
|
-
'*',
|
|
48
|
-
]
|
|
49
|
-
|
|
50
|
-
# If running OpenREM in a virtual directory specify the virtual directory here.
|
|
51
|
-
# Eg. if OpenREM is in a virtual directory dms (http://server/dms/), specify 'dms/' below.
|
|
52
|
-
# LOGIN_URL (always) should be overridden to include the VIRTUAL_DIRECTORY
|
|
53
|
-
VIRTUAL_DIRECTORY = ''
|
|
54
|
-
|
|
55
|
-
# Logging configuration
|
|
56
|
-
# Set the log file location. The example places the log file in the media directory. Change as required - on linux
|
|
57
|
-
# systems you might put these in a subdirectory of /var/log/. If you want all the logs in one file, set the filename
|
|
58
|
-
# to be the same for each one.
|
|
59
|
-
LOG_ROOT = MEDIA_ROOT
|
|
60
|
-
LOG_FILENAME = os.path.join(LOG_ROOT, 'openrem.log')
|
|
61
|
-
QR_FILENAME = os.path.join(LOG_ROOT, 'openrem_qr.log')
|
|
62
|
-
EXTRACTOR_FILENAME = os.path.join(LOG_ROOT, 'openrem_extractor.log')
|
|
63
|
-
|
|
64
|
-
LOGGING['handlers']['file']['filename'] = LOG_FILENAME # General logs
|
|
65
|
-
LOGGING['handlers']['qr_file']['filename'] = QR_FILENAME # Query Retrieve SCU logs
|
|
66
|
-
LOGGING['handlers']['extractor_file']['filename'] = EXTRACTOR_FILENAME # Extractor logs
|
|
67
|
-
|
|
68
|
-
# Set log message format. Options are 'verbose' or 'simple'. Recommend leaving as 'verbose'.
|
|
69
|
-
LOGGING['handlers']['file']['formatter'] = 'verbose' # General logs
|
|
70
|
-
LOGGING['handlers']['qr_file']['formatter'] = 'verbose' # Query Retrieve SCU logs
|
|
71
|
-
LOGGING['handlers']['extractor_file']['formatter'] = 'verbose' # Extractor logs
|
|
72
|
-
|
|
73
|
-
# Set the log level. Options are 'DEBUG', 'INFO', 'WARNING', 'ERROR', and 'CRITICAL', with progressively less logging.
|
|
74
|
-
LOGGING['loggers']['remapp']['level'] = 'INFO' # General logs
|
|
75
|
-
LOGGING['loggers']['remapp.netdicom.qrscu']['level'] = 'INFO' # Query Retrieve SCU logs
|
|
76
|
-
LOGGING['loggers']['remapp.extractors']['level'] = 'INFO' # Extractor logs
|
|
77
|
-
|
|
78
|
-
# Linux only for now: configure 'rotating' logs so they don't get too big. Remove the '# ' to uncomment. 'LOGGING'
|
|
79
|
-
# should be at the start of the line.
|
|
80
|
-
# LOGGING['handlers']['file']['class'] = 'logging.handlers.RotatingFileHandler'
|
|
81
|
-
# LOGGING['handlers']['file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
|
|
82
|
-
# LOGGING['handlers']['file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
|
|
83
|
-
# LOGGING['handlers']['qr_file']['class'] = 'logging.handlers.RotatingFileHandler'
|
|
84
|
-
# LOGGING['handlers']['qr_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
|
|
85
|
-
# LOGGING['handlers']['qr_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
|
|
86
|
-
# LOGGING['handlers']['extractor_file']['class'] = 'logging.handlers.RotatingFileHandler'
|
|
87
|
-
# LOGGING['handlers']['extractor_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
|
|
88
|
-
# LOGGING['handlers']['extractor_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
|
|
89
|
-
|
|
90
|
-
# Regionalisation settings
|
|
91
|
-
# Date format for exporting data to Excel xlsx files.
|
|
92
|
-
# Default in OpenREM is dd/mm/yyyy. Override it by uncommenting and customising below; a full list of codes is
|
|
93
|
-
# available at https://msdn.microsoft.com/en-us/library/ee634398.aspx.
|
|
94
|
-
# XLSX_DATE = 'mm/dd/yyyy'
|
|
95
|
-
# Local time zone for this installation. Choices can be found here:
|
|
96
|
-
# http://en.wikipedia.org/wiki/List_of_tz_zones_by_name
|
|
97
|
-
# although not all choices may be available on all operating systems.
|
|
98
|
-
# In a Windows environment this must be set to your system time zone.
|
|
99
|
-
TIME_ZONE = 'Europe/London'
|
|
100
|
-
# Language code for this installation. All choices can be found here:
|
|
101
|
-
# http://www.i18nguy.com/unicode/language-identifiers.html
|
|
102
|
-
LANGUAGE_CODE = 'en-us'
|
|
103
|
-
|
|
104
|
-
# Locations of various tools for DICOM RDSR creation from CT images
|
|
105
|
-
DCMTK_PATH = 'C:\\Users\\David\\Apps\\dcmtk-3.6.0-win32-i386\\bin'
|
|
106
|
-
DCMCONV = os.path.join(DCMTK_PATH, 'dcmconv.exe')
|
|
107
|
-
DCMMKDIR = os.path.join(DCMTK_PATH, 'dcmmkdir.exe')
|
|
108
|
-
JAVA_EXE = 'C:\\Users\\David\\Apps\\doseUtility\\windows\\jre\\bin\\java.exe'
|
|
109
|
-
JAVA_OPTIONS = '-Xms256m -Xmx512m -Xss1m -cp'
|
|
110
|
-
PIXELMED_JAR = 'C:\\Users\\David\\Apps\\doseUtility\\pixelmed.jar'
|
|
111
|
-
PIXELMED_JAR_OPTIONS = '-Djava.awt.headless=true com.pixelmed.doseocr.OCR -'
|
|
112
|
-
|
|
113
|
-
# E-mail server settings - see https://docs.djangoproject.com/en/2.2/topics/email/
|
|
114
|
-
EMAIL_HOST = 'localhost'
|
|
115
|
-
EMAIL_PORT = 25
|
|
116
|
-
EMAIL_HOST_USER = ''
|
|
117
|
-
EMAIL_HOST_PASSWORD = ''
|
|
118
|
-
EMAIL_USE_TLS = 0 # Use 0 for False, 1 for True
|
|
119
|
-
EMAIL_USE_SSL = 0 # Use 0 for False, 1 for True
|
|
120
|
-
EMAIL_DOSE_ALERT_SENDER = 'your.alert@email.address'
|
|
121
|
-
EMAIL_OPENREM_URL = 'http://your.openrem.server'
|
|
122
|
-
|
|
123
|
-
# Ignore the Device Observer UID of these equipment models when creating display name entries during import of DICOM
|
|
124
|
-
# RDSR data using the rdsr.py extractor.
|
|
125
|
-
# See https://docs.openrem.org/en/latest/i_displaynames.html#ignore-device-obs-uid.
|
|
126
|
-
IGNORE_DEVICE_OBSERVER_UID_FOR_THESE_MODELS = ['GE OEC Fluorostar']
|
|
127
|
-
|
|
128
|
-
# The following line can run on your OpenREM server to set up a dummy smtp server for testing:
|
|
129
|
-
# python -m smtpd -n -c DebuggingServer localhost:25
|
|
1
|
+
from .settings import *
|
|
2
|
+
|
|
3
|
+
import os
|
|
4
|
+
|
|
5
|
+
# Choose your database and fill in the details below. If testing, you
|
|
6
|
+
# can use the sqlite3 database as it doesn't require any further configuration
|
|
7
|
+
# A Windows example path might be: 'C:/Users/myusername/Documents/OpenREM/openrem.db'
|
|
8
|
+
# Note, forward slashes are used in the config files, even for Windows.
|
|
9
|
+
|
|
10
|
+
DATABASES = {
|
|
11
|
+
'default': {
|
|
12
|
+
'ENGINE': 'django.db.backends.sqlite3', # Add 'postgresql', 'mysql', 'sqlite3' or 'oracle'.
|
|
13
|
+
'NAME': '/home/user/openrem/openrem.db', # Or path to database file if using sqlite3.
|
|
14
|
+
'USER': '', # Not used with sqlite3.
|
|
15
|
+
'PASSWORD': '', # Not used with sqlite3.
|
|
16
|
+
'HOST': '', # Set to empty string for localhost. Not used with sqlite3.
|
|
17
|
+
'PORT': '', # Set to empty string for default. Not used with sqlite3.
|
|
18
|
+
}
|
|
19
|
+
}
|
|
20
|
+
|
|
21
|
+
|
|
22
|
+
# Absolute filesystem path to the directory that will hold xlsx and csv
|
|
23
|
+
# exports patient size import files
|
|
24
|
+
# Linux example: '/var/openrem/media/'
|
|
25
|
+
# Windows example: 'C:/Users/myusername/Documents/OpenREM/media/'
|
|
26
|
+
MEDIA_ROOT = ''
|
|
27
|
+
|
|
28
|
+
# Absolute path to the directory static files should be collected to.
|
|
29
|
+
# Don't put anything in this directory yourself; store your static files
|
|
30
|
+
# in apps' 'static/' subdirectories and in STATICFILES_DIRS.
|
|
31
|
+
# Example: '/home/media/media.lawrence.com/static/'
|
|
32
|
+
STATIC_ROOT = ''
|
|
33
|
+
JS_REVERSE_OUTPUT_PATH = os.path.join(STATIC_ROOT, 'js', 'django_reverse')
|
|
34
|
+
|
|
35
|
+
# You should generate a new secret key. Make this unique, and don't
|
|
36
|
+
# share it with anybody. See the docs.
|
|
37
|
+
SECRET_KEY = 'hmj#)-$smzqk*=wuz9^a46rex30^$_j$rghp+1#y&i+pys5b@$'
|
|
38
|
+
|
|
39
|
+
# Debug mode is now set to False by default. If you need to troubleshoot, can turn it back on here:
|
|
40
|
+
# DEBUG = True
|
|
41
|
+
|
|
42
|
+
# Set the domain name that people will use to access your OpenREM server.
|
|
43
|
+
# This is required if the DEBUG mode is set to False (default)
|
|
44
|
+
# Example: '.doseserver.' or '10.23.123.123'. A dot before a name allows subdomains, a dot after allows for FQDN eg
|
|
45
|
+
# doseserver.ad.trust.nhs.uk. Alternatively, use '*' to remove this security feature if you handle it in other ways.
|
|
46
|
+
ALLOWED_HOSTS = [
|
|
47
|
+
'*',
|
|
48
|
+
]
|
|
49
|
+
|
|
50
|
+
# If running OpenREM in a virtual directory specify the virtual directory here.
|
|
51
|
+
# Eg. if OpenREM is in a virtual directory dms (http://server/dms/), specify 'dms/' below.
|
|
52
|
+
# LOGIN_URL (always) should be overridden to include the VIRTUAL_DIRECTORY
|
|
53
|
+
VIRTUAL_DIRECTORY = ''
|
|
54
|
+
|
|
55
|
+
# Logging configuration
|
|
56
|
+
# Set the log file location. The example places the log file in the media directory. Change as required - on linux
|
|
57
|
+
# systems you might put these in a subdirectory of /var/log/. If you want all the logs in one file, set the filename
|
|
58
|
+
# to be the same for each one.
|
|
59
|
+
LOG_ROOT = MEDIA_ROOT
|
|
60
|
+
LOG_FILENAME = os.path.join(LOG_ROOT, 'openrem.log')
|
|
61
|
+
QR_FILENAME = os.path.join(LOG_ROOT, 'openrem_qr.log')
|
|
62
|
+
EXTRACTOR_FILENAME = os.path.join(LOG_ROOT, 'openrem_extractor.log')
|
|
63
|
+
|
|
64
|
+
LOGGING['handlers']['file']['filename'] = LOG_FILENAME # General logs
|
|
65
|
+
LOGGING['handlers']['qr_file']['filename'] = QR_FILENAME # Query Retrieve SCU logs
|
|
66
|
+
LOGGING['handlers']['extractor_file']['filename'] = EXTRACTOR_FILENAME # Extractor logs
|
|
67
|
+
|
|
68
|
+
# Set log message format. Options are 'verbose' or 'simple'. Recommend leaving as 'verbose'.
|
|
69
|
+
LOGGING['handlers']['file']['formatter'] = 'verbose' # General logs
|
|
70
|
+
LOGGING['handlers']['qr_file']['formatter'] = 'verbose' # Query Retrieve SCU logs
|
|
71
|
+
LOGGING['handlers']['extractor_file']['formatter'] = 'verbose' # Extractor logs
|
|
72
|
+
|
|
73
|
+
# Set the log level. Options are 'DEBUG', 'INFO', 'WARNING', 'ERROR', and 'CRITICAL', with progressively less logging.
|
|
74
|
+
LOGGING['loggers']['remapp']['level'] = 'INFO' # General logs
|
|
75
|
+
LOGGING['loggers']['remapp.netdicom.qrscu']['level'] = 'INFO' # Query Retrieve SCU logs
|
|
76
|
+
LOGGING['loggers']['remapp.extractors']['level'] = 'INFO' # Extractor logs
|
|
77
|
+
|
|
78
|
+
# Linux only for now: configure 'rotating' logs so they don't get too big. Remove the '# ' to uncomment. 'LOGGING'
|
|
79
|
+
# should be at the start of the line.
|
|
80
|
+
# LOGGING['handlers']['file']['class'] = 'logging.handlers.RotatingFileHandler'
|
|
81
|
+
# LOGGING['handlers']['file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
|
|
82
|
+
# LOGGING['handlers']['file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
|
|
83
|
+
# LOGGING['handlers']['qr_file']['class'] = 'logging.handlers.RotatingFileHandler'
|
|
84
|
+
# LOGGING['handlers']['qr_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
|
|
85
|
+
# LOGGING['handlers']['qr_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
|
|
86
|
+
# LOGGING['handlers']['extractor_file']['class'] = 'logging.handlers.RotatingFileHandler'
|
|
87
|
+
# LOGGING['handlers']['extractor_file']['maxBytes'] = 10 * 1024 * 1024 # 10*1024*1024 = 10 MB
|
|
88
|
+
# LOGGING['handlers']['extractor_file']['backupCount'] = 5 # number of log files to keep before deleting the oldest one
|
|
89
|
+
|
|
90
|
+
# Regionalisation settings
|
|
91
|
+
# Date format for exporting data to Excel xlsx files.
|
|
92
|
+
# Default in OpenREM is dd/mm/yyyy. Override it by uncommenting and customising below; a full list of codes is
|
|
93
|
+
# available at https://msdn.microsoft.com/en-us/library/ee634398.aspx.
|
|
94
|
+
# XLSX_DATE = 'mm/dd/yyyy'
|
|
95
|
+
# Local time zone for this installation. Choices can be found here:
|
|
96
|
+
# http://en.wikipedia.org/wiki/List_of_tz_zones_by_name
|
|
97
|
+
# although not all choices may be available on all operating systems.
|
|
98
|
+
# In a Windows environment this must be set to your system time zone.
|
|
99
|
+
TIME_ZONE = 'Europe/London'
|
|
100
|
+
# Language code for this installation. All choices can be found here:
|
|
101
|
+
# http://www.i18nguy.com/unicode/language-identifiers.html
|
|
102
|
+
LANGUAGE_CODE = 'en-us'
|
|
103
|
+
|
|
104
|
+
# Locations of various tools for DICOM RDSR creation from CT images
|
|
105
|
+
DCMTK_PATH = 'C:\\Users\\David\\Apps\\dcmtk-3.6.0-win32-i386\\bin'
|
|
106
|
+
DCMCONV = os.path.join(DCMTK_PATH, 'dcmconv.exe')
|
|
107
|
+
DCMMKDIR = os.path.join(DCMTK_PATH, 'dcmmkdir.exe')
|
|
108
|
+
JAVA_EXE = 'C:\\Users\\David\\Apps\\doseUtility\\windows\\jre\\bin\\java.exe'
|
|
109
|
+
JAVA_OPTIONS = '-Xms256m -Xmx512m -Xss1m -cp'
|
|
110
|
+
PIXELMED_JAR = 'C:\\Users\\David\\Apps\\doseUtility\\pixelmed.jar'
|
|
111
|
+
PIXELMED_JAR_OPTIONS = '-Djava.awt.headless=true com.pixelmed.doseocr.OCR -'
|
|
112
|
+
|
|
113
|
+
# E-mail server settings - see https://docs.djangoproject.com/en/2.2/topics/email/
|
|
114
|
+
EMAIL_HOST = 'localhost'
|
|
115
|
+
EMAIL_PORT = 25
|
|
116
|
+
EMAIL_HOST_USER = ''
|
|
117
|
+
EMAIL_HOST_PASSWORD = ''
|
|
118
|
+
EMAIL_USE_TLS = 0 # Use 0 for False, 1 for True
|
|
119
|
+
EMAIL_USE_SSL = 0 # Use 0 for False, 1 for True
|
|
120
|
+
EMAIL_DOSE_ALERT_SENDER = 'your.alert@email.address'
|
|
121
|
+
EMAIL_OPENREM_URL = 'http://your.openrem.server'
|
|
122
|
+
|
|
123
|
+
# Ignore the Device Observer UID of these equipment models when creating display name entries during import of DICOM
|
|
124
|
+
# RDSR data using the rdsr.py extractor.
|
|
125
|
+
# See https://docs.openrem.org/en/latest/i_displaynames.html#ignore-device-obs-uid.
|
|
126
|
+
IGNORE_DEVICE_OBSERVER_UID_FOR_THESE_MODELS = ['GE OEC Fluorostar']
|
|
127
|
+
|
|
128
|
+
# The following line can run on your OpenREM server to set up a dummy smtp server for testing:
|
|
129
|
+
# python -m smtpd -n -c DebuggingServer localhost:25
|