OpenREM 1.0.0b2__py3-none-any.whl → 1.0.0b3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (279) hide show
  1. openrem/locale/de/LC_MESSAGES/django.po +1060 -1059
  2. openrem/locale/django.pot +973 -972
  3. openrem/locale/es_MX/LC_MESSAGES/django.po +1049 -1048
  4. openrem/locale/it/LC_MESSAGES/django.po +1044 -1043
  5. openrem/locale/lt/LC_MESSAGES/django.po +989 -988
  6. openrem/locale/nb_NO/LC_MESSAGES/django.po +985 -984
  7. openrem/locale/pt_BR/LC_MESSAGES/django.po +1003 -1002
  8. openrem/manage.py +10 -10
  9. openrem/openremproject/__init__.py +1 -1
  10. openrem/openremproject/local_settings.py.linux +128 -128
  11. openrem/openremproject/local_settings.py.windows +144 -144
  12. openrem/openremproject/local_settings.py.windows-sqlite3 +129 -129
  13. openrem/openremproject/settings.py +278 -278
  14. openrem/openremproject/urls.py +32 -32
  15. openrem/openremproject/wsgi.py.example +28 -28
  16. openrem/remapp/__init__.py +2 -2
  17. openrem/remapp/admin.py +31 -31
  18. openrem/remapp/exports/ct_export.py +780 -753
  19. openrem/remapp/exports/dx_export.py +817 -805
  20. openrem/remapp/exports/export_common.py +931 -951
  21. openrem/remapp/exports/export_common_pandas.py +2422 -0
  22. openrem/remapp/exports/exportviews.py +815 -860
  23. openrem/remapp/exports/mg_csv_nhsbsp.py +292 -292
  24. openrem/remapp/exports/mg_export.py +673 -510
  25. openrem/remapp/exports/nm_export.py +796 -575
  26. openrem/remapp/exports/rf_export.py +1418 -1431
  27. openrem/remapp/extractors/ct_philips.py +424 -414
  28. openrem/remapp/extractors/ct_toshiba.py +2116 -2108
  29. openrem/remapp/extractors/dx.py +1033 -952
  30. openrem/remapp/extractors/extract_common.py +817 -817
  31. openrem/remapp/extractors/import_views.py +426 -426
  32. openrem/remapp/extractors/mam.py +685 -672
  33. openrem/remapp/extractors/nm_image.py +439 -431
  34. openrem/remapp/extractors/ptsizecsv2db.py +368 -368
  35. openrem/remapp/extractors/rdsr.py +667 -654
  36. openrem/remapp/extractors/rdsr_methods.py +1771 -1768
  37. openrem/remapp/extractors/rrdsr_methods.py +630 -622
  38. openrem/remapp/fixtures/openskin_safelist.json +11 -11
  39. openrem/remapp/forms.py +2286 -2277
  40. openrem/remapp/interface/chart_functions.py +2412 -2393
  41. openrem/remapp/interface/mod_filters.py +1241 -1243
  42. openrem/remapp/migrations/0001_initial.py.1-0-upgrade +1043 -1043
  43. openrem/remapp/models.py +3418 -3407
  44. openrem/remapp/netdicom/dicomviews.py +681 -683
  45. openrem/remapp/netdicom/qrscu.py +2646 -2646
  46. openrem/remapp/netdicom/tools.py +134 -134
  47. openrem/remapp/static/css/bootstrap-theme.css +587 -587
  48. openrem/remapp/static/css/bootstrap-theme.min.css +4 -4
  49. openrem/remapp/static/css/bootstrap.css +6800 -6800
  50. openrem/remapp/static/css/bootstrap.min.css +4 -4
  51. openrem/remapp/static/css/datepicker3.css +790 -790
  52. openrem/remapp/static/css/jquery.qtip.min.css +2 -2
  53. openrem/remapp/static/css/openrem-extra.css +442 -442
  54. openrem/remapp/static/css/openrem.css +96 -96
  55. openrem/remapp/static/css/registration.css +34 -34
  56. openrem/remapp/static/fonts/glyphicons-halflings-regular.svg +287 -287
  57. openrem/remapp/static/js/bootstrap-datepicker.js +1671 -1671
  58. openrem/remapp/static/js/bootstrap.js +2363 -2363
  59. openrem/remapp/static/js/bootstrap.min.js +6 -6
  60. openrem/remapp/static/js/charts/chartCommonFunctions.js +75 -75
  61. openrem/remapp/static/js/charts/chartFullScreen.js +41 -41
  62. openrem/remapp/static/js/charts/ctChartAjax.js +331 -331
  63. openrem/remapp/static/js/charts/dxChartAjax.js +290 -290
  64. openrem/remapp/static/js/charts/mgChartAjax.js +144 -144
  65. openrem/remapp/static/js/charts/nmChartAjax.js +64 -64
  66. openrem/remapp/static/js/charts/plotly-2.35.2.min.js +8 -0
  67. openrem/remapp/static/js/charts/rfChartAjax.js +128 -128
  68. openrem/remapp/static/js/chroma.min.js +32 -32
  69. openrem/remapp/static/js/datepicker.js +5 -5
  70. openrem/remapp/static/js/dicom.js +115 -115
  71. openrem/remapp/static/js/django_reverse/reverse.js +13 -13
  72. openrem/remapp/static/js/formatDate.js +7 -7
  73. openrem/remapp/static/js/html5shiv.min.js +8 -8
  74. openrem/remapp/static/js/jquery-1.11.0.min.js +4 -4
  75. openrem/remapp/static/js/npm.js +12 -12
  76. openrem/remapp/static/js/respond.min.js +4 -4
  77. openrem/remapp/static/js/skin-dose-maps/jquery.qtip.min.js +4 -4
  78. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dHUDObject.js +112 -112
  79. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dObject.js +367 -367
  80. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dPersonObject.js +158 -158
  81. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapColourScaleObject.js +153 -153
  82. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapObject.js +367 -367
  83. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping.js +584 -584
  84. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping3d.js +255 -255
  85. openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMappingAjax.js +267 -212
  86. openrem/remapp/static/js/skin-dose-maps/three.min.js +835 -835
  87. openrem/remapp/static/js/sorttable.js +495 -495
  88. openrem/remapp/templates/base.html +253 -253
  89. openrem/remapp/templates/registration/changepassword.html +25 -25
  90. openrem/remapp/templates/registration/changepassworddone.html +12 -12
  91. openrem/remapp/templates/registration/login.html +42 -42
  92. openrem/remapp/templates/remapp/backgroundtaskmaximumrows_form.html +29 -29
  93. openrem/remapp/templates/remapp/base.html +1 -1
  94. openrem/remapp/templates/remapp/ctdetail.html +235 -235
  95. openrem/remapp/templates/remapp/ctfiltered.html +310 -310
  96. openrem/remapp/templates/remapp/dicomdeletesettings_form.html +31 -31
  97. openrem/remapp/templates/remapp/dicomqr.html +147 -147
  98. openrem/remapp/templates/remapp/dicomquerydetails.html +83 -83
  99. openrem/remapp/templates/remapp/dicomqueryimages.html +49 -49
  100. openrem/remapp/templates/remapp/dicomqueryseries.html +109 -109
  101. openrem/remapp/templates/remapp/dicomquerysummary.html +48 -48
  102. openrem/remapp/templates/remapp/dicomremoteqr_confirm_delete.html +60 -60
  103. openrem/remapp/templates/remapp/dicomremoteqr_form.html +32 -32
  104. openrem/remapp/templates/remapp/dicomstorescp_confirm_delete.html +53 -53
  105. openrem/remapp/templates/remapp/dicomstorescp_form.html +48 -48
  106. openrem/remapp/templates/remapp/dicomsummary.html +257 -257
  107. openrem/remapp/templates/remapp/displaychartoptions.html +184 -184
  108. openrem/remapp/templates/remapp/displayhomepageoptions.html +57 -57
  109. openrem/remapp/templates/remapp/displayname-count.html +6 -6
  110. openrem/remapp/templates/remapp/displayname-last-date.html +3 -3
  111. openrem/remapp/templates/remapp/displayname-modality.html +86 -105
  112. openrem/remapp/templates/remapp/displayname-skinmap.html +18 -18
  113. openrem/remapp/templates/remapp/displaynameupdate.html +100 -100
  114. openrem/remapp/templates/remapp/displaynameview.html +222 -219
  115. openrem/remapp/templates/remapp/dxdetail.html +176 -176
  116. openrem/remapp/templates/remapp/dxfiltered.html +324 -324
  117. openrem/remapp/templates/remapp/exports-active.html +25 -25
  118. openrem/remapp/templates/remapp/exports-complete.html +35 -35
  119. openrem/remapp/templates/remapp/exports-error.html +26 -26
  120. openrem/remapp/templates/remapp/exports-queue.html +18 -18
  121. openrem/remapp/templates/remapp/exports.html +191 -191
  122. openrem/remapp/templates/remapp/failed_summary_list.html +27 -27
  123. openrem/remapp/templates/remapp/filteredbase.html +162 -162
  124. openrem/remapp/templates/remapp/highdosemetricalertsettings_form.html +76 -76
  125. openrem/remapp/templates/remapp/home-list-modalities.html +94 -94
  126. openrem/remapp/templates/remapp/home.html +202 -202
  127. openrem/remapp/templates/remapp/list_filters.html +24 -24
  128. openrem/remapp/templates/remapp/mgdetail.html +160 -138
  129. openrem/remapp/templates/remapp/mgfiltered.html +311 -311
  130. openrem/remapp/templates/remapp/nmdetail.html +300 -300
  131. openrem/remapp/templates/remapp/nmfiltered.html +255 -255
  132. openrem/remapp/templates/remapp/notpatient.html +190 -190
  133. openrem/remapp/templates/remapp/notpatientindicators_form_base.html +81 -81
  134. openrem/remapp/templates/remapp/notpatientindicatorsid_confirm_delete.html +54 -54
  135. openrem/remapp/templates/remapp/notpatientindicatorsid_form.html +23 -23
  136. openrem/remapp/templates/remapp/notpatientindicatorsname_confirm_delete.html +54 -54
  137. openrem/remapp/templates/remapp/notpatientindicatorsname_form.html +23 -23
  138. openrem/remapp/templates/remapp/notpatientindicatorsname_form_base.html +85 -85
  139. openrem/remapp/templates/remapp/openskinsafelist_add.html +130 -130
  140. openrem/remapp/templates/remapp/openskinsafelist_confirm_delete.html +100 -100
  141. openrem/remapp/templates/remapp/openskinsafelist_form.html +207 -207
  142. openrem/remapp/templates/remapp/patientidsettings_form.html +83 -83
  143. openrem/remapp/templates/remapp/populate_summary_progress.html +83 -83
  144. openrem/remapp/templates/remapp/populate_summary_progress_error.html +36 -36
  145. openrem/remapp/templates/remapp/review_failed_imports.html +157 -157
  146. openrem/remapp/templates/remapp/review_failed_study.html +41 -41
  147. openrem/remapp/templates/remapp/review_studies_delete_button.html +20 -20
  148. openrem/remapp/templates/remapp/review_study.html +19 -19
  149. openrem/remapp/templates/remapp/review_summary_list.html +245 -245
  150. openrem/remapp/templates/remapp/rf_dose_alert_email_template.html +14 -1
  151. openrem/remapp/templates/remapp/rfalertnotificationsview.html +59 -59
  152. openrem/remapp/templates/remapp/rfdetail.html +547 -543
  153. openrem/remapp/templates/remapp/rfdetailbase.html +18 -18
  154. openrem/remapp/templates/remapp/rffiltered.html +404 -404
  155. openrem/remapp/templates/remapp/sizeimports.html +119 -119
  156. openrem/remapp/templates/remapp/sizeprocess.html +96 -96
  157. openrem/remapp/templates/remapp/sizeupload.html +110 -110
  158. openrem/remapp/templates/remapp/skindosemapcalcsettings_form.html +28 -28
  159. openrem/remapp/templates/remapp/standardname-modality.html +69 -69
  160. openrem/remapp/templates/remapp/standardnames_confirm_delete.html +71 -71
  161. openrem/remapp/templates/remapp/standardnames_form.html +87 -87
  162. openrem/remapp/templates/remapp/standardnamesettings_form.html +41 -41
  163. openrem/remapp/templates/remapp/standardnamesrefreshall.html +92 -92
  164. openrem/remapp/templates/remapp/standardnameview.html +103 -103
  165. openrem/remapp/templates/remapp/study_confirm_delete.html +147 -147
  166. openrem/remapp/templates/remapp/task_admin.html +265 -265
  167. openrem/remapp/templates/remapp/tasks.html +76 -76
  168. openrem/remapp/templatetags/formfilters.py +13 -13
  169. openrem/remapp/templatetags/proper_paginate.py +38 -38
  170. openrem/remapp/templatetags/remappduration.py +36 -36
  171. openrem/remapp/templatetags/sigdig.py +38 -38
  172. openrem/remapp/templatetags/sort_class_property_value.py +15 -15
  173. openrem/remapp/templatetags/update_variable.py +20 -20
  174. openrem/remapp/templatetags/url_replace.py +25 -25
  175. openrem/remapp/tests/test_charts_common.py +202 -202
  176. openrem/remapp/tests/test_charts_ct.py +7111 -7111
  177. openrem/remapp/tests/test_charts_dx.py +3513 -3513
  178. openrem/remapp/tests/test_charts_mg.py +1116 -1115
  179. openrem/remapp/tests/test_dcmdatetime.py +189 -189
  180. openrem/remapp/tests/test_dicom_qr.py +2580 -2580
  181. openrem/remapp/tests/test_display_name.py +274 -274
  182. openrem/remapp/tests/test_export_ct_xlsx.py +272 -248
  183. openrem/remapp/tests/test_export_dx_xlsx.py +137 -134
  184. openrem/remapp/tests/test_export_mammo_csv.py +242 -242
  185. openrem/remapp/tests/test_export_rf_xlsx.py +246 -246
  186. openrem/remapp/tests/test_files/DX-Im-DRGEM.dcm +0 -0
  187. openrem/remapp/tests/test_files/MG-RDSR-GEPristina-2D.dcm +0 -0
  188. openrem/remapp/tests/test_files/MG-RDSR-GEPristina-DBT.dcm +0 -0
  189. openrem/remapp/tests/test_files/MG-RDSR-Giotto-DBT.dcm +0 -0
  190. openrem/remapp/tests/test_files/skin_map_alphenix.py +590 -590
  191. openrem/remapp/tests/test_files/skin_map_zee.py +354 -354
  192. openrem/remapp/tests/test_filters_ct.py +321 -321
  193. openrem/remapp/tests/test_filters_dx.py +92 -92
  194. openrem/remapp/tests/test_filters_mammo.py +183 -183
  195. openrem/remapp/tests/test_filters_rf.py +118 -118
  196. openrem/remapp/tests/test_get_values.py +72 -72
  197. openrem/remapp/tests/test_hash_id.py +65 -65
  198. openrem/remapp/tests/test_import_ct_esr_ge.py +3034 -3034
  199. openrem/remapp/tests/test_import_ct_philips_rdsr.py +42 -42
  200. openrem/remapp/tests/test_import_ct_rdsr_multiple.py +256 -256
  201. openrem/remapp/tests/test_import_ct_rdsr_siemens.py +827 -827
  202. openrem/remapp/tests/test_import_ct_rdsr_spectrumdynamics.py +91 -91
  203. openrem/remapp/tests/test_import_ct_rdsr_toshiba_dosecheck.py +67 -67
  204. openrem/remapp/tests/test_import_ct_rdsr_toshiba_multivaluesd.py +33 -33
  205. openrem/remapp/tests/test_import_ct_rdsr_toshiba_pixelmed.py +118 -118
  206. openrem/remapp/tests/test_import_ct_sc_philips.py +44 -44
  207. openrem/remapp/tests/test_import_dual_rdsr.py +110 -110
  208. openrem/remapp/tests/test_import_dx.py +1267 -1191
  209. openrem/remapp/tests/test_import_dx_rdsr.py +1250 -1253
  210. openrem/remapp/tests/test_import_mam.py +438 -438
  211. openrem/remapp/tests/test_import_mg_im_hol_proj.py +46 -46
  212. openrem/remapp/tests/test_import_mg_rdsr.py +586 -586
  213. openrem/remapp/tests/test_import_nm_image.py +420 -420
  214. openrem/remapp/tests/test_import_nm_siemens_rdsr.py +396 -396
  215. openrem/remapp/tests/test_import_px.py +161 -161
  216. openrem/remapp/tests/test_import_rf_rdsr.py +420 -418
  217. openrem/remapp/tests/test_missing_date.py +42 -42
  218. openrem/remapp/tests/test_not_patient.py +60 -60
  219. openrem/remapp/tests/test_openskin.py +272 -272
  220. openrem/remapp/tests/test_patient_id_settings.py +72 -72
  221. openrem/remapp/tests/test_pt_size_import.py +232 -232
  222. openrem/remapp/tests/test_rf_detail.py +113 -113
  223. openrem/remapp/tests/test_rf_high_dose_alert.py +361 -361
  224. openrem/remapp/tools/background.py +361 -361
  225. openrem/remapp/tools/check_standard_name_status.py +47 -0
  226. openrem/remapp/tools/check_uid.py +70 -70
  227. openrem/remapp/tools/dcmdatetime.py +248 -248
  228. openrem/remapp/tools/default_import.py +44 -47
  229. openrem/remapp/tools/get_values.py +230 -230
  230. openrem/remapp/tools/hash_id.py +58 -58
  231. openrem/remapp/tools/make_skin_map.py +448 -406
  232. openrem/remapp/tools/not_patient_indicators.py +72 -72
  233. openrem/remapp/tools/openskin/calc_exp_map.py +173 -173
  234. openrem/remapp/tools/openskin/geomclass.py +475 -475
  235. openrem/remapp/tools/openskin/geomfunc.py +433 -432
  236. openrem/remapp/tools/openskin/skinmap.py +417 -417
  237. openrem/remapp/tools/populate_summary.py +185 -193
  238. openrem/remapp/tools/save_skin_map_structure.py +73 -73
  239. openrem/remapp/tools/send_high_dose_alert_emails.py +238 -207
  240. openrem/remapp/urls.py +456 -448
  241. openrem/remapp/version.py +11 -11
  242. openrem/remapp/views.py +1147 -1052
  243. openrem/remapp/views_admin.py +3876 -3936
  244. openrem/remapp/views_charts_ct.py +2110 -2058
  245. openrem/remapp/views_charts_dx.py +1906 -1836
  246. openrem/remapp/views_charts_mg.py +1349 -1196
  247. openrem/remapp/views_charts_nm.py +535 -535
  248. openrem/remapp/views_charts_rf.py +1219 -1241
  249. openrem/remapp/views_openskin.py +379 -384
  250. openrem/sample-config/openrem-consumer.service +12 -12
  251. openrem/sample-config/openrem-gunicorn.service +13 -13
  252. openrem/sample-config/openrem-server +14 -13
  253. openrem/sample-config/openrem_orthanc_config_linux.lua +454 -454
  254. openrem/sample-config/openrem_orthanc_config_windows.lua +455 -455
  255. openrem/sample-config/queue-init.bat +73 -73
  256. openrem/scripts/openrem_ctphilips.py +25 -25
  257. openrem/scripts/openrem_cttoshiba.py +28 -28
  258. openrem/scripts/openrem_dx.py +22 -22
  259. openrem/scripts/openrem_mg.py +22 -22
  260. openrem/scripts/openrem_nm.py +22 -22
  261. openrem/scripts/openrem_ptsizecsv.py +17 -17
  262. openrem/scripts/openrem_qr.py +12 -12
  263. openrem/scripts/openrem_rdsr.py +25 -25
  264. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/METADATA +39 -29
  265. openrem-1.0.0b3.dist-info/RECORD +379 -0
  266. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/WHEEL +1 -1
  267. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/COPYING-GPLv3 +674 -674
  268. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/LICENSE +22 -22
  269. OpenREM-1.0.0b2.dist-info/RECORD +0 -373
  270. openrem/remapp/static/js/charts/plotly-2.17.1.min.js +0 -8
  271. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ctphilips.py +0 -0
  272. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_cttoshiba.py +0 -0
  273. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_dx.py +0 -0
  274. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_mg.py +0 -0
  275. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_nm.py +0 -0
  276. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ptsizecsv.py +0 -0
  277. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_qr.py +0 -0
  278. {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_rdsr.py +0 -0
  279. {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/top_level.txt +0 -0
openrem/remapp/views.py CHANGED
@@ -1,1052 +1,1147 @@
1
- # pylint: disable=too-many-lines
2
- # OpenREM - Radiation Exposure Monitoring tools for the physicist
3
- # Copyright (C) 2012,2013 The Royal Marsden NHS Foundation Trust
4
- #
5
- # This program is free software: you can redistribute it and/or modify
6
- # it under the terms of the GNU General Public License as published by
7
- # the Free Software Foundation, either version 3 of the License, or
8
- # (at your option) any later version.
9
- #
10
- # This program is distributed in the hope that it will be useful,
11
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
12
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13
- # GNU General Public License for more details.
14
- #
15
- # Additional permission under section 7 of GPLv3:
16
- # You shall not make any use of the name of The Royal Marsden NHS
17
- # Foundation trust in connection with this Program in any press or
18
- # other public announcement without the prior written consent of
19
- # The Royal Marsden NHS Foundation Trust.
20
- #
21
- # You should have received a copy of the GNU General Public License
22
- # along with this program. If not, see <http://www.gnu.org/licenses/>.
23
- #
24
- # 8/10/2014: DJP added new DX section and added DX to home page.
25
- # 9/10/2014: DJP changed DX to CR
26
- #
27
- """
28
- .. module:: views.
29
- :synopsis: Module to render appropriate content according to request.
30
-
31
- .. moduleauthor:: Ed McDonagh
32
-
33
- """
34
-
35
- import os
36
- import gzip
37
- import json
38
- import logging
39
- from datetime import datetime, timedelta
40
- from decimal import Decimal
41
- import pickle # nosec
42
- from collections import OrderedDict
43
-
44
- from django.db.models import (
45
- Sum,
46
- Q,
47
- Max,
48
- Count,
49
- )
50
- from django.contrib import messages
51
- from django.contrib.auth import logout
52
- from django.contrib.auth.decorators import login_required
53
- from django.contrib.auth.models import Group
54
- from django.core.exceptions import ObjectDoesNotExist
55
- from django.core.paginator import Paginator, EmptyPage, PageNotAnInteger
56
- from django.http import HttpResponseRedirect, HttpResponse, JsonResponse
57
- from django.shortcuts import render, redirect
58
- from django.template.defaultfilters import register
59
- from django.urls import reverse_lazy
60
- from django.utils.translation import gettext as _
61
- from django.views.decorators.csrf import csrf_exempt
62
- from django.conf import settings
63
- import numpy as np
64
-
65
- from .forms import itemsPerPageForm
66
- from .interface.mod_filters import (
67
- RFSummaryListFilter,
68
- RFFilterPlusStdNames,
69
- RFFilterPlusPid,
70
- RFFilterPlusPidPlusStdNames,
71
- dx_acq_filter,
72
- ct_acq_filter,
73
- MGSummaryListFilter,
74
- MGFilterPlusPid,
75
- MGFilterPlusStdNames,
76
- MGFilterPlusPidPlusStdNames,
77
- nm_filter,
78
- )
79
- from .tools.make_skin_map import make_skin_map
80
- from .views_charts_ct import (
81
- generate_required_ct_charts_list,
82
- ct_chart_form_processing,
83
- )
84
- from .views_charts_dx import (
85
- generate_required_dx_charts_list,
86
- dx_chart_form_processing,
87
- )
88
- from .views_charts_mg import (
89
- generate_required_mg_charts_list,
90
- mg_chart_form_processing,
91
- )
92
- from .views_charts_rf import (
93
- generate_required_rf_charts_list,
94
- rf_chart_form_processing,
95
- )
96
- from .views_charts_nm import nm_chart_form_processing, generate_required_nm_charts_list
97
- from .models import (
98
- GeneralStudyModuleAttr,
99
- create_user_profile,
100
- HighDoseMetricAlertSettings,
101
- SkinDoseMapCalcSettings,
102
- PatientIDSettings,
103
- DicomDeleteSettings,
104
- AdminTaskQuestions,
105
- HomePageAdminSettings,
106
- UpgradeStatus,
107
- StandardNameSettings,
108
- )
109
- from .version import __version__, __docs_version__, __skin_map_version__
110
-
111
- os.environ["DJANGO_SETTINGS_MODULE"] = "openremproject.settings"
112
-
113
-
114
- logger = logging.getLogger(__name__)
115
-
116
-
117
- @register.filter
118
- def multiply(value, arg):
119
- """
120
- Return multiplication within Django templates
121
-
122
- :param value: the value to multiply
123
- :param arg: the second value to multiply
124
- :return: the multiplication
125
- """
126
- try:
127
- value = float(value)
128
- arg = float(arg)
129
- return value * arg
130
- except ValueError:
131
- return None
132
-
133
-
134
- def logout_page(request):
135
- """Log users out and re-direct them to the main page."""
136
- logout(request)
137
- return HttpResponseRedirect(reverse_lazy("home"))
138
-
139
-
140
- def update_items_per_page_form(request, user_profile):
141
- # Obtain the number of items per page from the request
142
- items_per_page_form = itemsPerPageForm(request.GET)
143
- # check whether the form data is valid
144
- if items_per_page_form.is_valid():
145
- # Use the form data if the user clicked on the submit button
146
- if "submit" in request.GET:
147
- # process the data in form.cleaned_data as required
148
- user_profile.itemsPerPage = items_per_page_form.cleaned_data["itemsPerPage"]
149
- user_profile.save()
150
-
151
- # If submit was not clicked then use the settings already stored in the user's profile
152
- else:
153
- form_data = {"itemsPerPage": user_profile.itemsPerPage}
154
- items_per_page_form = itemsPerPageForm(form_data)
155
- return items_per_page_form
156
-
157
-
158
- def get_or_create_user(request):
159
- try:
160
- # See if the user has plot settings in userprofile
161
- user_profile = request.user.userprofile
162
- except ObjectDoesNotExist:
163
- # Create a default userprofile for the user if one doesn't exist
164
- create_user_profile(sender=request.user, instance=request.user, created=True)
165
- user_profile = request.user.userprofile
166
- return user_profile
167
-
168
-
169
- def create_admin_info(request):
170
- admin = {
171
- "openremversion": __version__,
172
- "docsversion": __docs_version__,
173
- }
174
-
175
- for group in request.user.groups.all():
176
- admin[group.name] = True
177
- return admin
178
-
179
-
180
- def standard_name_settings():
181
- """Obtain the system-level enable_standard_names setting."""
182
- try:
183
- StandardNameSettings.objects.get()
184
- except ObjectDoesNotExist:
185
- StandardNameSettings.objects.create()
186
- return StandardNameSettings.objects.values_list("enable_standard_names", flat=True)[
187
- 0
188
- ]
189
-
190
-
191
- def create_paginated_study_list(request, f, user_profile):
192
- paginator = Paginator(f.qs, user_profile.itemsPerPage)
193
- page = request.GET.get("page")
194
- try:
195
- study_list = paginator.page(page)
196
- except PageNotAnInteger:
197
- study_list = paginator.page(1)
198
- except EmptyPage:
199
- study_list = paginator.page(paginator.num_pages)
200
- return study_list
201
-
202
-
203
- def generate_return_structure(request, f):
204
- user_profile = get_or_create_user(request)
205
- items_per_page_form = update_items_per_page_form(request, user_profile)
206
- admin = create_admin_info(request)
207
- study_list = create_paginated_study_list(request, f, user_profile)
208
- enable_standard_names = standard_name_settings()
209
- return_structure = {
210
- "filter": f,
211
- "study_list": study_list,
212
- "admin": admin,
213
- "itemsPerPageForm": items_per_page_form,
214
- "showStandardNames": enable_standard_names,
215
- }
216
- return user_profile, return_structure
217
-
218
-
219
- @login_required
220
- def dx_summary_list_filter(request):
221
- """Obtain data for radiographic summary view."""
222
- pid = bool(request.user.groups.filter(name="pidgroup"))
223
- f = dx_acq_filter(request.GET, pid=pid)
224
-
225
- user_profile, return_structure = generate_return_structure(request, f)
226
- chart_options_form = dx_chart_form_processing(request, user_profile)
227
- return_structure["chartOptionsForm"] = chart_options_form
228
-
229
- if user_profile.plotCharts:
230
- return_structure["required_charts"] = generate_required_dx_charts_list(
231
- user_profile
232
- )
233
-
234
- return render(request, "remapp/dxfiltered.html", return_structure)
235
-
236
-
237
- @login_required
238
- def dx_detail_view(request, pk=None):
239
- """Detail view for a DX study."""
240
-
241
- try:
242
- study = GeneralStudyModuleAttr.objects.get(pk=pk)
243
- except:
244
- messages.error(request, "That study was not found")
245
- return redirect(reverse_lazy("dx_summary_list_filter"))
246
-
247
- admin = create_admin_info(request)
248
- enable_standard_names = standard_name_settings()
249
-
250
- projection_set = study.projectionxrayradiationdose_set.get()
251
- events_all = projection_set.irradeventxraydata_set.select_related(
252
- "anatomical_structure",
253
- "laterality",
254
- "target_region",
255
- "image_view",
256
- "patient_orientation_modifier_cid",
257
- "acquisition_plane",
258
- ).all()
259
-
260
- accum_set = projection_set.accumxraydose_set.all()
261
- # accum_integrated = projection_set.accumxraydose_set.get().accumintegratedprojradiogdose_set.get()
262
-
263
- return render(
264
- request,
265
- "remapp/dxdetail.html",
266
- {
267
- "generalstudymoduleattr": study,
268
- "admin": admin,
269
- "projection_set": projection_set,
270
- "events_all": events_all,
271
- "accum_set": accum_set,
272
- "showStandardNames": enable_standard_names,
273
- },
274
- )
275
-
276
-
277
- @login_required
278
- def rf_summary_list_filter(request):
279
- """Obtain data for radiographic summary view."""
280
-
281
- enable_standard_names = standard_name_settings()
282
- queryset = (
283
- GeneralStudyModuleAttr.objects.filter(modality_type__exact="RF")
284
- .order_by("-study_date", "-study_time")
285
- .distinct()
286
- )
287
-
288
- if request.user.groups.filter(name="pidgroup"):
289
- if enable_standard_names:
290
- f = RFFilterPlusPidPlusStdNames(
291
- request.GET,
292
- queryset=queryset,
293
- )
294
- else:
295
- f = RFFilterPlusPid(
296
- request.GET,
297
- queryset=queryset,
298
- )
299
- else:
300
- if enable_standard_names:
301
- f = RFFilterPlusStdNames(
302
- request.GET,
303
- queryset=queryset,
304
- )
305
- else:
306
- f = RFSummaryListFilter(
307
- request.GET,
308
- queryset=queryset,
309
- )
310
-
311
- user_profile, return_structure = generate_return_structure(request, f)
312
- chart_options_form = rf_chart_form_processing(request, user_profile)
313
-
314
- # Import total DAP and total dose at reference point alert levels. Create with default values if not found.
315
- try:
316
- HighDoseMetricAlertSettings.objects.get()
317
- except ObjectDoesNotExist:
318
- HighDoseMetricAlertSettings.objects.create()
319
- alert_levels = HighDoseMetricAlertSettings.objects.values(
320
- "show_accum_dose_over_delta_weeks",
321
- "alert_total_dap_rf",
322
- "alert_total_rp_dose_rf",
323
- "accum_dose_delta_weeks",
324
- )[0]
325
-
326
- return_structure["chartOptionsForm"] = chart_options_form
327
- return_structure["alertLevels"] = alert_levels
328
-
329
- if user_profile.plotCharts:
330
- return_structure["required_charts"] = generate_required_rf_charts_list(
331
- user_profile
332
- )
333
-
334
- return render(request, "remapp/rffiltered.html", return_structure)
335
-
336
-
337
- @login_required
338
- def rf_detail_view(request, pk=None):
339
- """Detail view for an RF study."""
340
-
341
- enable_standard_names = standard_name_settings()
342
-
343
- try:
344
- study = GeneralStudyModuleAttr.objects.get(pk=pk)
345
- except ObjectDoesNotExist:
346
- messages.error(request, "That study was not found")
347
- return redirect(reverse_lazy("rf_summary_list_filter"))
348
-
349
- # get the totals
350
- irradiation_types = [("Fluoroscopy",), ("Acquisition",)]
351
- fluoro_dap_total = Decimal(0)
352
- fluoro_rp_total = Decimal(0)
353
- acq_dap_total = Decimal(0)
354
- acq_rp_total = Decimal(0)
355
- stu_dose_totals = [(0, 0), (0, 0)]
356
- stu_time_totals = [0, 0]
357
- total_dap = 0
358
- total_dose = 0
359
- # Iterate over the planes (for bi-plane systems, for single plane systems there is only one)
360
- projection_xray_dose_set = study.projectionxrayradiationdose_set.get()
361
- accumxraydose_set_all_planes = (
362
- projection_xray_dose_set.accumxraydose_set.select_related(
363
- "acquisition_plane"
364
- ).all()
365
- )
366
- events_all = projection_xray_dose_set.irradeventxraydata_set.select_related(
367
- "irradiation_event_type",
368
- "patient_table_relationship_cid",
369
- "patient_orientation_cid",
370
- "patient_orientation_modifier_cid",
371
- "acquisition_plane",
372
- ).all()
373
-
374
- for dose_ds in accumxraydose_set_all_planes:
375
- accum_dose_ds = dose_ds.accumprojxraydose_set.get()
376
- try:
377
- fluoro_dap_total += accum_dose_ds.fluoro_gym2_to_cgycm2()
378
- except TypeError:
379
- pass
380
- try:
381
- fluoro_rp_total += accum_dose_ds.fluoro_dose_rp_total
382
- except TypeError:
383
- pass
384
- try:
385
- acq_dap_total += accum_dose_ds.acq_gym2_to_cgycm2()
386
- except TypeError:
387
- pass
388
- try:
389
- acq_rp_total += accum_dose_ds.acquisition_dose_rp_total
390
- except TypeError:
391
- pass
392
- stu_dose_totals[0] = (fluoro_dap_total, fluoro_rp_total)
393
- stu_dose_totals[1] = (acq_dap_total, acq_rp_total)
394
- try:
395
- stu_time_totals[0] = stu_time_totals[0] + accum_dose_ds.total_fluoro_time
396
- except TypeError:
397
- pass
398
- try:
399
- stu_time_totals[1] = (
400
- stu_time_totals[1] + accum_dose_ds.total_acquisition_time
401
- )
402
- except TypeError:
403
- pass
404
- accum_integrated = (
405
- accum_dose_ds.accumulated_xray_dose.accumintegratedprojradiogdose_set.get()
406
- )
407
- try:
408
- total_dap = total_dap + accum_integrated.dose_area_product_total
409
- except TypeError:
410
- pass
411
- try:
412
- total_dose = total_dose + accum_dose_ds.dose_rp_total
413
- except TypeError:
414
- pass
415
-
416
- # get info for different Acquisition Types
417
- stu_inc_totals = ( # pylint: disable=line-too-long
418
- GeneralStudyModuleAttr.objects.filter(
419
- pk=pk,
420
- projectionxrayradiationdose__irradeventxraydata__irradiation_event_type__code_meaning__contains="Acquisition",
421
- )
422
- .annotate(
423
- sum_dap=Sum(
424
- "projectionxrayradiationdose__irradeventxraydata__dose_area_product"
425
- )
426
- * 1000000,
427
- sum_dose_rp=Sum(
428
- "projectionxrayradiationdose__irradeventxraydata__irradeventxraysourcedata__dose_rp"
429
- ),
430
- )
431
- .order_by(
432
- "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type"
433
- )
434
- )
435
- stu_dose_totals.extend(
436
- stu_inc_totals.values_list("sum_dap", "sum_dose_rp").order_by(
437
- "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type"
438
- )
439
- )
440
- acq_irr_types = (
441
- stu_inc_totals.values_list(
442
- "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type__code_meaning"
443
- )
444
- .order_by(
445
- "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type"
446
- )
447
- .distinct()
448
- )
449
- # stu_time_totals = [None] * len(stu_irr_types)
450
- for _, irr_type in enumerate(acq_irr_types):
451
- stu_time_totals.append( # pylint: disable=line-too-long
452
- list(
453
- GeneralStudyModuleAttr.objects.filter(
454
- pk=pk,
455
- projectionxrayradiationdose__irradeventxraydata__irradiation_event_type__code_meaning=irr_type[
456
- 0
457
- ],
458
- )
459
- .aggregate(
460
- Sum(
461
- "projectionxrayradiationdose__irradeventxraydata__irradeventxraysourcedata__irradiation_duration"
462
- )
463
- )
464
- .values()
465
- )[0]
466
- )
467
- irradiation_types.extend([("- " + acq_type[0],) for acq_type in acq_irr_types])
468
-
469
- # Add the study totals
470
- irradiation_types.append(("Total",))
471
- stu_dose_totals.append((total_dap * 1000000, total_dose))
472
- # does total duration (summed over fluoroscopy and acquisitions) means something?
473
- stu_time_totals.append(stu_time_totals[0] + stu_time_totals[1])
474
-
475
- study_totals = np.column_stack(
476
- (irradiation_types, stu_dose_totals, stu_time_totals)
477
- ).tolist()
478
-
479
- try:
480
- SkinDoseMapCalcSettings.objects.get()
481
- except ObjectDoesNotExist:
482
- SkinDoseMapCalcSettings.objects.create()
483
-
484
- # Import total DAP and total dose at reference point alert levels. Create with default values if not found.
485
- try:
486
- HighDoseMetricAlertSettings.objects.get()
487
- except ObjectDoesNotExist:
488
- HighDoseMetricAlertSettings.objects.create()
489
- alert_levels = HighDoseMetricAlertSettings.objects.values(
490
- "show_accum_dose_over_delta_weeks",
491
- "alert_total_dap_rf",
492
- "alert_total_rp_dose_rf",
493
- "accum_dose_delta_weeks",
494
- )[0]
495
-
496
- # Obtain the studies that are within delta weeks if needed
497
- if alert_levels["show_accum_dose_over_delta_weeks"]:
498
- patient_id = study.patientmoduleattr_set.values_list("patient_id", flat=True)[0]
499
- if patient_id:
500
- study_date = study.study_date
501
- week_delta = HighDoseMetricAlertSettings.objects.values_list(
502
- "accum_dose_delta_weeks", flat=True
503
- )[0]
504
- oldest_date = study_date - timedelta(weeks=week_delta)
505
- included_studies = GeneralStudyModuleAttr.objects.filter(
506
- modality_type__exact="RF",
507
- patientmoduleattr__patient_id__exact=patient_id,
508
- study_date__range=[oldest_date, study_date],
509
- )
510
- else:
511
- included_studies = None
512
- else:
513
- included_studies = None
514
-
515
- admin = create_admin_info(request)
516
- admin["enable_skin_dose_maps"] = SkinDoseMapCalcSettings.objects.values_list(
517
- "enable_skin_dose_maps", flat=True
518
- )[0]
519
-
520
- for group in request.user.groups.all():
521
- admin[group.name] = True
522
-
523
- return render(
524
- request,
525
- "remapp/rfdetail.html",
526
- {
527
- "generalstudymoduleattr": study,
528
- "admin": admin,
529
- "study_totals": study_totals,
530
- "projection_xray_dose_set": projection_xray_dose_set,
531
- "accumxraydose_set_all_planes": accumxraydose_set_all_planes,
532
- "events_all": events_all,
533
- "alert_levels": alert_levels,
534
- "studies_in_week_delta": included_studies,
535
- "showStandardNames": enable_standard_names,
536
- },
537
- )
538
-
539
-
540
- @login_required
541
- def rf_detail_view_skin_map(request, pk=None):
542
- """View to calculate a skin dose map. Currently just a copy of rf_detail_view."""
543
- try:
544
- GeneralStudyModuleAttr.objects.get(pk=pk)
545
- except ObjectDoesNotExist:
546
- messages.error(request, "That study was not found")
547
- return redirect(reverse_lazy("rf_summary_list_filter"))
548
-
549
- # Check to see if there is already a skin map pickle with the same study ID.
550
- try:
551
- study_date = GeneralStudyModuleAttr.objects.get(pk=pk).study_date
552
- if study_date:
553
- skin_map_path = os.path.join(
554
- settings.MEDIA_ROOT,
555
- "skin_maps",
556
- "{0:0>4}".format(study_date.year),
557
- "{0:0>2}".format(study_date.month),
558
- "{0:0>2}".format(study_date.day),
559
- "skin_map_" + str(pk) + ".p",
560
- )
561
- else:
562
- skin_map_path = os.path.join(
563
- settings.MEDIA_ROOT, "skin_maps", "skin_map_" + str(pk) + ".p"
564
- )
565
- except:
566
- skin_map_path = os.path.join(
567
- settings.MEDIA_ROOT, "skin_maps", "skin_map_" + str(pk) + ".p"
568
- )
569
-
570
- # If patient weight is missing from the database then db_pat_mass will be undefined
571
- try:
572
- db_pat_mass = float(
573
- GeneralStudyModuleAttr.objects.get(pk=pk)
574
- .patientstudymoduleattr_set.get()
575
- .patient_weight
576
- )
577
- except (ValueError, TypeError):
578
- db_pat_mass = 73.2
579
- if not db_pat_mass:
580
- db_pat_mass = 73.2
581
-
582
- # If patient weight is missing from the database then db_pat_mass will be undefined
583
- try:
584
- db_pat_height = (
585
- float(
586
- GeneralStudyModuleAttr.objects.get(pk=pk)
587
- .patientstudymoduleattr_set.get()
588
- .patient_size
589
- )
590
- * 100
591
- )
592
- except (ValueError, TypeError):
593
- db_pat_height = 178.6
594
- if not db_pat_height:
595
- db_pat_height = 178.6
596
-
597
- loaded_existing_data = False
598
- pat_mass_unchanged = False
599
- pat_height_unchanged = False
600
- if os.path.exists(skin_map_path):
601
- with gzip.open(skin_map_path, "rb") as f:
602
- existing_skin_map_data = pickle.load(f)
603
- try:
604
- if existing_skin_map_data["skin_map_version"] == __skin_map_version__:
605
- # Round the float values to 1 decimal place and convert to string before comparing
606
- if str(round(existing_skin_map_data["patient_height"], 1)) == str(
607
- round(db_pat_height, 1)
608
- ):
609
- pat_height_unchanged = True
610
-
611
- # Round the float values to 1 decimal place and convert to string before comparing
612
- if str(round(existing_skin_map_data["patient_mass"], 1)) == str(
613
- round(db_pat_mass, 1)
614
- ):
615
- pat_mass_unchanged = True
616
-
617
- if pat_height_unchanged and pat_mass_unchanged:
618
- return_structure = existing_skin_map_data
619
- loaded_existing_data = True
620
- except KeyError:
621
- pass
622
-
623
- if not loaded_existing_data:
624
- make_skin_map(pk)
625
- with gzip.open(skin_map_path, "rb") as f:
626
- return_structure = pickle.load(f)
627
-
628
- return_structure["primary_key"] = pk
629
- return JsonResponse(return_structure, safe=False)
630
-
631
-
632
- @login_required
633
- def nm_summary_list_filter(request):
634
- """Obtain data for NM summary view."""
635
- pid = bool(request.user.groups.filter(name="pidgroup"))
636
- f = nm_filter(request.GET, pid=pid)
637
-
638
- user_profile, return_structure = generate_return_structure(request, f)
639
- chart_options_form = nm_chart_form_processing(request, user_profile)
640
- return_structure["chartOptionsForm"] = chart_options_form
641
-
642
- if user_profile.plotCharts:
643
- return_structure["required_charts"] = generate_required_nm_charts_list(
644
- user_profile
645
- )
646
-
647
- return render(request, "remapp/nmfiltered.html", return_structure)
648
-
649
-
650
- @login_required
651
- def nm_detail_view(request, pk=None):
652
- """Detail view for a NM study."""
653
- try:
654
- study = GeneralStudyModuleAttr.objects.get(pk=pk)
655
- except ObjectDoesNotExist:
656
- messages.error(request, "That study was not found")
657
- return redirect(reverse_lazy("nm_summary_list_filter"))
658
-
659
- associated_ct = GeneralStudyModuleAttr.objects.filter(
660
- Q(study_instance_uid__exact=study.study_instance_uid)
661
- & Q(modality_type__exact="CT")
662
- ).first()
663
-
664
- admin = create_admin_info(request)
665
- enable_standard_names = standard_name_settings()
666
-
667
- return render(
668
- request,
669
- "remapp/nmdetail.html",
670
- {
671
- "generalstudymoduleattr": study,
672
- "admin": admin,
673
- "associated_ct": associated_ct,
674
- "showStandardNames": enable_standard_names,
675
- },
676
- )
677
-
678
-
679
- @login_required
680
- def ct_summary_list_filter(request):
681
- """Obtain data for CT summary view."""
682
- pid = bool(request.user.groups.filter(name="pidgroup"))
683
- f = ct_acq_filter(request.GET, pid=pid)
684
-
685
- user_profile, return_structure = generate_return_structure(request, f)
686
- chart_options_form = ct_chart_form_processing(request, user_profile)
687
- return_structure["chartOptionsForm"] = chart_options_form
688
-
689
- if user_profile.plotCharts:
690
- return_structure["required_charts"] = generate_required_ct_charts_list(
691
- user_profile
692
- )
693
-
694
- return render(request, "remapp/ctfiltered.html", return_structure)
695
-
696
-
697
- @login_required
698
- def ct_detail_view(request, pk=None):
699
- """Detail view for a CT study."""
700
-
701
- enable_standard_names = standard_name_settings()
702
-
703
- try:
704
- study = GeneralStudyModuleAttr.objects.get(pk=pk)
705
- except ObjectDoesNotExist:
706
- messages.error(request, "That study was not found")
707
- return redirect(reverse_lazy("ct_summary_list_filter"))
708
-
709
- events_all = (
710
- study.ctradiationdose_set.get()
711
- .ctirradiationeventdata_set.select_related(
712
- "ct_acquisition_type", "ctdiw_phantom_type"
713
- )
714
- .order_by("pk")
715
- )
716
-
717
- associated_nm = GeneralStudyModuleAttr.objects.filter(
718
- Q(study_instance_uid__exact=study.study_instance_uid)
719
- & Q(modality_type__exact="NM")
720
- ).first()
721
-
722
- admin = create_admin_info(request)
723
-
724
- return render(
725
- request,
726
- "remapp/ctdetail.html",
727
- {
728
- "generalstudymoduleattr": study,
729
- "admin": admin,
730
- "events_all": events_all,
731
- "associated_nm": associated_nm,
732
- "showStandardNames": enable_standard_names,
733
- },
734
- )
735
-
736
-
737
- @login_required
738
- def mg_summary_list_filter(request):
739
- """Mammography data for summary view."""
740
-
741
- enable_standard_names = standard_name_settings()
742
- filter_data = request.GET.copy()
743
- if "page" in filter_data:
744
- del filter_data["page"]
745
-
746
- queryset = (
747
- GeneralStudyModuleAttr.objects.filter(modality_type__exact="MG")
748
- .order_by("-study_date", "-study_time")
749
- .distinct()
750
- )
751
-
752
- if request.user.groups.filter(name="pidgroup"):
753
- if enable_standard_names:
754
- f = MGFilterPlusPidPlusStdNames(
755
- filter_data,
756
- queryset=queryset,
757
- )
758
- else:
759
- f = MGFilterPlusPid(
760
- filter_data,
761
- queryset=queryset,
762
- )
763
- else:
764
- if enable_standard_names:
765
- f = MGFilterPlusStdNames(
766
- filter_data,
767
- queryset=queryset,
768
- )
769
- else:
770
- f = MGSummaryListFilter(
771
- filter_data,
772
- queryset=queryset,
773
- )
774
-
775
- user_profile, return_structure = generate_return_structure(request, f)
776
- chart_options_form = mg_chart_form_processing(request, user_profile)
777
- return_structure["chartOptionsForm"] = chart_options_form
778
-
779
- if user_profile.plotCharts:
780
- return_structure["required_charts"] = generate_required_mg_charts_list(
781
- user_profile
782
- )
783
-
784
- return render(request, "remapp/mgfiltered.html", return_structure)
785
-
786
-
787
- @login_required
788
- def mg_detail_view(request, pk=None):
789
- """Detail view for a CT study."""
790
-
791
- enable_standard_names = standard_name_settings()
792
-
793
- try:
794
- study = GeneralStudyModuleAttr.objects.get(pk=pk)
795
- except:
796
- messages.error(request, "That study was not found")
797
- return redirect(reverse_lazy("mg_summary_list_filter"))
798
-
799
- admin = create_admin_info(request)
800
-
801
- projection_xray_dose_set = study.projectionxrayradiationdose_set.get()
802
- accum_mammo_set = (
803
- projection_xray_dose_set.accumxraydose_set.get()
804
- .accummammographyxraydose_set.select_related("laterality")
805
- .all()
806
- )
807
- events_all = projection_xray_dose_set.irradeventxraydata_set.select_related(
808
- "laterality", "image_view"
809
- ).all()
810
-
811
- return render(
812
- request,
813
- "remapp/mgdetail.html",
814
- {
815
- "generalstudymoduleattr": study,
816
- "admin": admin,
817
- "projection_xray_dose_set": projection_xray_dose_set,
818
- "accum_mammo_set": accum_mammo_set,
819
- "events_all": events_all,
820
- "showStandardNames": enable_standard_names,
821
- },
822
- )
823
-
824
-
825
- def openrem_home(request):
826
- try:
827
- HomePageAdminSettings.objects.get()
828
- except ObjectDoesNotExist:
829
- HomePageAdminSettings.objects.create()
830
-
831
- test_dicom_store_settings = DicomDeleteSettings.objects.all()
832
- if not test_dicom_store_settings:
833
- DicomDeleteSettings.objects.create()
834
-
835
- if not Group.objects.filter(name="viewgroup"):
836
- vg = Group(name="viewgroup")
837
- vg.save()
838
- if not Group.objects.filter(name="exportgroup"):
839
- eg = Group(name="exportgroup")
840
- eg.save()
841
- if not Group.objects.filter(name="admingroup"):
842
- ag = Group(name="admingroup")
843
- ag.save()
844
- if not Group.objects.filter(name="pidgroup"):
845
- pg = Group(name="pidgroup")
846
- pg.save()
847
- if not Group.objects.filter(name="importsizegroup"):
848
- sg = Group(name="importsizegroup")
849
- sg.save()
850
- if not Group.objects.filter(name="importqrgroup"):
851
- qg = Group(name="importqrgroup")
852
- qg.save()
853
-
854
- id_settings = PatientIDSettings.objects.all()
855
- if not id_settings:
856
- PatientIDSettings.objects.create()
857
-
858
- users_in_groups = {"any": False, "admin": False}
859
- for g in Group.objects.all():
860
- if Group.objects.get(name=g).user_set.all():
861
- users_in_groups["any"] = True
862
- if g.name == "admingroup":
863
- users_in_groups["admin"] = True
864
-
865
- try:
866
- # See if the user has plot settings in userprofile
867
- user_profile = request.user.userprofile
868
- except (ObjectDoesNotExist, AttributeError):
869
- # Attribute error needed for AnonymousUser, who doesn't have a userprofile attribute
870
- if request.user.is_authenticated:
871
- # Create a default userprofile for the user if one doesn't exist
872
- create_user_profile(
873
- sender=request.user, instance=request.user, created=True
874
- )
875
- user_profile = request.user.userprofile
876
-
877
- allstudies = GeneralStudyModuleAttr.objects.all()
878
-
879
- study_counts = allstudies.aggregate(
880
- all_count=Count("pk"),
881
- ct_count=Count("pk", filter=Q(modality_type="CT")),
882
- rf_count=Count("pk", filter=Q(modality_type="RF")),
883
- mg_count=Count("pk", filter=Q(modality_type="MG")),
884
- nm_count=Count("pk", filter=Q(modality_type="NM")),
885
- dx_count=Count("pk", filter=Q(modality_type__in=["DX", "CR", "PX"])),
886
- )
887
-
888
- modalities = OrderedDict()
889
- if study_counts["ct_count"]:
890
- modalities["CT"] = {"name": _("CT"), "count": study_counts["ct_count"]}
891
- if study_counts["rf_count"]:
892
- modalities["RF"] = {"name": _("Fluoroscopy"), "count": study_counts["rf_count"]}
893
- if study_counts["mg_count"]:
894
- modalities["MG"] = {"name": _("Mammography"), "count": study_counts["mg_count"]}
895
- if study_counts["dx_count"]:
896
- modalities["DX"] = {"name": _("Radiography"), "count": study_counts["dx_count"]}
897
- if study_counts["nm_count"]:
898
- modalities["NM"] = {"name": _("Nuclear Medicine"), "count": study_counts["nm_count"]}
899
-
900
- homedata = {"total": study_counts["all_count"]}
901
-
902
- # Determine whether to calculate workload settings
903
- display_workload_stats = HomePageAdminSettings.objects.values_list(
904
- "enable_workload_stats", flat=True
905
- )[0]
906
- home_config = {"display_workload_stats": display_workload_stats}
907
- if display_workload_stats:
908
- if request.user.is_authenticated:
909
- home_config["day_delta_a"] = user_profile.summaryWorkloadDaysA
910
- home_config["day_delta_b"] = user_profile.summaryWorkloadDaysB
911
- else:
912
- home_config["day_delta_a"] = 7
913
- home_config["day_delta_b"] = 28
914
-
915
- admin = dict(openremversion=__version__, docsversion=__docs_version__)
916
-
917
- for group in request.user.groups.all():
918
- admin[group.name] = True
919
-
920
- admin_questions = {}
921
- admin_questions_true = False
922
- if request.user.groups.filter(name="admingroup"):
923
- not_patient_indicator_question = (
924
- AdminTaskQuestions.get_solo().ask_revert_to_074_question
925
- )
926
- admin_questions[
927
- "not_patient_indicator_question"
928
- ] = not_patient_indicator_question
929
- # if any(value for value in admin_questions.itervalues()):
930
- # admin_questions_true = True # Don't know why this doesn't work
931
- if not_patient_indicator_question:
932
- admin_questions_true = True # Doing this instead
933
-
934
- upgrade_status = UpgradeStatus.get_solo()
935
- migration_complete = upgrade_status.from_0_9_1_summary_fields
936
- if not migration_complete and homedata["total"] == 0:
937
- upgrade_status.from_0_9_1_summary_fields = True
938
- upgrade_status.save()
939
- migration_complete = True
940
-
941
- # from remapp.tools.send_high_dose_alert_emails import send_rf_high_dose_alert_email
942
- # send_rf_high_dose_alert_email(881397)
943
- # send_rf_high_dose_alert_email(417973)
944
- # # Send a test e-mail
945
- # from django.core.mail import send_mail
946
- # from openremproject import settings
947
- # from remapp.models import HighDoseMetricAlertSettings
948
- # from django.contrib.auth.models import User
949
- #
950
- # try:
951
- # HighDoseMetricAlertSettings.objects.get()
952
- # except ObjectDoesNotExist:
953
- # HighDoseMetricAlertSettings.objects.create()
954
- #
955
- # send_alert_emails = HighDoseMetricAlertSettings.objects.values_list(
956
- # 'send_high_dose_metric_alert_emails', flat=True
957
- # )[0]
958
- # if send_alert_emails:
959
- # recipients = User.objects.filter(
960
- # highdosemetricalertrecipients__receive_high_dose_metric_alerts__exact=True
961
- # ).values_list('email', flat=True)
962
- # send_mail('OpenREM high dose alert test',
963
- # 'This is a test for high dose alert e-mails from OpenREM',
964
- # settings.EMAIL_DOSE_ALERT_SENDER,
965
- # recipients,
966
- # fail_silently=False)
967
- # # End of sending a test e-mail
968
-
969
- return render(
970
- request,
971
- "remapp/home.html",
972
- {
973
- "homedata": homedata,
974
- "admin": admin,
975
- "users_in_groups": users_in_groups,
976
- "admin_questions": admin_questions,
977
- "admin_questions_true": admin_questions_true,
978
- "modalities": modalities,
979
- "home_config": home_config,
980
- "migration_complete": migration_complete,
981
- },
982
- )
983
-
984
-
985
- @csrf_exempt
986
- def update_latest_studies(request):
987
- """
988
- AJAX function to calculate the latest studies for each display name for a particular modality.
989
-
990
- :param request: Request object
991
- :return: HTML table of modalities
992
- """
993
- if request.is_ajax():
994
- data = request.POST
995
- modality = data.get("modality")
996
- if modality == "DX":
997
- studies = GeneralStudyModuleAttr.objects.filter(
998
- Q(modality_type__exact="DX")
999
- | Q(modality_type__exact="CR")
1000
- | Q(modality_type__exact="PX")
1001
- ).all()
1002
- else:
1003
- studies = GeneralStudyModuleAttr.objects.filter(
1004
- modality_type__exact=modality
1005
- ).all()
1006
-
1007
- today = datetime.now()
1008
- study_data = studies.values("generalequipmentmoduleattr__unique_equipment_name__display_name").annotate(
1009
- num_studies=Count("pk"),
1010
- latest_entry_date_time=Max("test_date_time"),
1011
- # timedelta=ExpressionWrapper(today - F("latest_entry_date_time"), output_field=DurationField()),
1012
- ).order_by("-latest_entry_date_time")
1013
-
1014
- display_workload_stats = HomePageAdminSettings.objects.values_list("enable_workload_stats", flat=True)[0]
1015
- if request.user.is_authenticated:
1016
- day_delta_a = request.user.userprofile.summaryWorkloadDaysA
1017
- day_delta_b = request.user.userprofile.summaryWorkloadDaysB
1018
- else:
1019
- day_delta_a = 7
1020
- day_delta_b = 28
1021
- date_a = today.date() - timedelta(days=day_delta_a)
1022
- date_b = today.date() - timedelta(days=day_delta_b)
1023
- if display_workload_stats:
1024
- study_data = study_data.annotate(
1025
- studies_since_delta_a=Count("pk", filter=Q(test_date_time__gte=date_a)),
1026
- studies_since_delta_b=Count("pk", filter=Q(test_date_time__gte=date_b))
1027
- ).order_by("-latest_entry_date_time")
1028
-
1029
- admin = {}
1030
- for group in request.user.groups.all():
1031
- admin[group.name] = True
1032
-
1033
- template = "remapp/home-list-modalities.html"
1034
-
1035
- home_config = {
1036
- "display_workload_stats": display_workload_stats,
1037
- "day_delta_a": day_delta_a,
1038
- "day_delta_b": day_delta_b,
1039
- "date_a": datetime.strftime(date_a, "%Y-%m-%d"),
1040
- "date_b": datetime.strftime(date_b, "%Y-%m-%d"),
1041
- }
1042
-
1043
- return render(
1044
- request,
1045
- template,
1046
- {
1047
- "study_data": study_data,
1048
- "modality": modality.lower(),
1049
- "home_config": home_config,
1050
- "admin": admin,
1051
- },
1052
- )
1
+ # pylint: disable=too-many-lines
2
+ # OpenREM - Radiation Exposure Monitoring tools for the physicist
3
+ # Copyright (C) 2012,2013 The Royal Marsden NHS Foundation Trust
4
+ #
5
+ # This program is free software: you can redistribute it and/or modify
6
+ # it under the terms of the GNU General Public License as published by
7
+ # the Free Software Foundation, either version 3 of the License, or
8
+ # (at your option) any later version.
9
+ #
10
+ # This program is distributed in the hope that it will be useful,
11
+ # but WITHOUT ANY WARRANTY; without even the implied warranty of
12
+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13
+ # GNU General Public License for more details.
14
+ #
15
+ # Additional permission under section 7 of GPLv3:
16
+ # You shall not make any use of the name of The Royal Marsden NHS
17
+ # Foundation trust in connection with this Program in any press or
18
+ # other public announcement without the prior written consent of
19
+ # The Royal Marsden NHS Foundation Trust.
20
+ #
21
+ # You should have received a copy of the GNU General Public License
22
+ # along with this program. If not, see <http://www.gnu.org/licenses/>.
23
+ #
24
+ # 8/10/2014: DJP added new DX section and added DX to home page.
25
+ # 9/10/2014: DJP changed DX to CR
26
+ #
27
+ """
28
+ .. module:: views.
29
+ :synopsis: Module to render appropriate content according to request.
30
+
31
+ .. moduleauthor:: Ed McDonagh
32
+
33
+ """
34
+
35
+ import os
36
+ import gzip
37
+ import json
38
+ import logging
39
+ from datetime import datetime, timedelta
40
+ from decimal import Decimal
41
+ import pickle # nosec
42
+ from collections import OrderedDict
43
+
44
+ from django.db.models import (
45
+ Sum,
46
+ Q,
47
+ Max,
48
+ Count,
49
+ )
50
+ from django.contrib import messages
51
+ from django.contrib.auth import logout
52
+ from django.contrib.auth.decorators import login_required
53
+ from django.contrib.auth.models import Group
54
+ from django.core.exceptions import ObjectDoesNotExist
55
+ from django.core.paginator import Paginator, EmptyPage, PageNotAnInteger
56
+ from django.http import HttpResponseRedirect, HttpResponse, JsonResponse
57
+ from django.shortcuts import render, redirect
58
+ from django.template.defaultfilters import register
59
+ from django.urls import reverse_lazy
60
+ from django.utils.translation import gettext as _
61
+ from django.views.decorators.csrf import csrf_exempt
62
+ from django.conf import settings
63
+ import numpy as np
64
+
65
+ from .forms import itemsPerPageForm
66
+ from .interface.mod_filters import (
67
+ RFSummaryListFilter,
68
+ RFFilterPlusStdNames,
69
+ RFFilterPlusPid,
70
+ RFFilterPlusPidPlusStdNames,
71
+ dx_acq_filter,
72
+ ct_acq_filter,
73
+ MGSummaryListFilter,
74
+ MGFilterPlusPid,
75
+ MGFilterPlusStdNames,
76
+ MGFilterPlusPidPlusStdNames,
77
+ nm_filter,
78
+ )
79
+ from .tools.make_skin_map import (
80
+ make_skin_map,
81
+ skin_dose_maps_enabled_for_xray_system,
82
+ )
83
+ from .tools.background import run_in_background_with_limits
84
+ from .tools.check_standard_name_status import are_standard_names_enabled
85
+ from .views_charts_ct import (
86
+ generate_required_ct_charts_list,
87
+ ct_chart_form_processing,
88
+ )
89
+ from .views_charts_dx import (
90
+ generate_required_dx_charts_list,
91
+ dx_chart_form_processing,
92
+ )
93
+ from .views_charts_mg import (
94
+ generate_required_mg_charts_list,
95
+ mg_chart_form_processing,
96
+ )
97
+ from .views_charts_rf import (
98
+ generate_required_rf_charts_list,
99
+ rf_chart_form_processing,
100
+ )
101
+ from .views_charts_nm import nm_chart_form_processing, generate_required_nm_charts_list
102
+ from .models import (
103
+ GeneralStudyModuleAttr,
104
+ create_user_profile,
105
+ HighDoseMetricAlertSettings,
106
+ SkinDoseMapCalcSettings,
107
+ PatientIDSettings,
108
+ DicomDeleteSettings,
109
+ AdminTaskQuestions,
110
+ HomePageAdminSettings,
111
+ UpgradeStatus,
112
+ StandardNameSettings,
113
+ BackgroundTask,
114
+ )
115
+ from .version import __version__, __docs_version__, __skin_map_version__
116
+
117
+ os.environ["DJANGO_SETTINGS_MODULE"] = "openremproject.settings"
118
+
119
+
120
+ logger = logging.getLogger(__name__)
121
+
122
+
123
+ @register.filter
124
+ def multiply(value, arg):
125
+ """
126
+ Return multiplication within Django templates
127
+
128
+ :param value: the value to multiply
129
+ :param arg: the second value to multiply
130
+ :return: the multiplication
131
+ """
132
+ try:
133
+ value = float(value)
134
+ arg = float(arg)
135
+ return value * arg
136
+ except ValueError:
137
+ return None
138
+
139
+
140
+ def logout_page(request):
141
+ """Log users out and re-direct them to the main page."""
142
+ logout(request)
143
+ return HttpResponseRedirect(reverse_lazy("home"))
144
+
145
+
146
+ def update_items_per_page_form(request, user_profile):
147
+ # Obtain the number of items per page from the request
148
+ items_per_page_form = itemsPerPageForm(request.GET)
149
+ # check whether the form data is valid
150
+ if items_per_page_form.is_valid():
151
+ # Use the form data if the user clicked on the submit button
152
+ if "submit" in request.GET:
153
+ # process the data in form.cleaned_data as required
154
+ user_profile.itemsPerPage = items_per_page_form.cleaned_data["itemsPerPage"]
155
+ user_profile.save()
156
+
157
+ # If submit was not clicked then use the settings already stored in the user's profile
158
+ else:
159
+ form_data = {"itemsPerPage": user_profile.itemsPerPage}
160
+ items_per_page_form = itemsPerPageForm(form_data)
161
+ return items_per_page_form
162
+
163
+
164
+ def get_or_create_user(request):
165
+ try:
166
+ # See if the user has plot settings in userprofile
167
+ user_profile = request.user.userprofile
168
+ except ObjectDoesNotExist:
169
+ # Create a default userprofile for the user if one doesn't exist
170
+ create_user_profile(sender=request.user, instance=request.user, created=True)
171
+ user_profile = request.user.userprofile
172
+ return user_profile
173
+
174
+
175
+ def create_admin_info(request):
176
+ admin = {
177
+ "openremversion": __version__,
178
+ "docsversion": __docs_version__,
179
+ }
180
+
181
+ for group in request.user.groups.all():
182
+ admin[group.name] = True
183
+ return admin
184
+
185
+
186
+ def create_paginated_study_list(request, f, user_profile):
187
+ paginator = Paginator(f.qs, user_profile.itemsPerPage)
188
+ page = request.GET.get("page")
189
+ try:
190
+ study_list = paginator.page(page)
191
+ except PageNotAnInteger:
192
+ study_list = paginator.page(1)
193
+ except EmptyPage:
194
+ study_list = paginator.page(paginator.num_pages)
195
+ return study_list
196
+
197
+
198
+ def generate_return_structure(request, f):
199
+ user_profile = get_or_create_user(request)
200
+ items_per_page_form = update_items_per_page_form(request, user_profile)
201
+ admin = create_admin_info(request)
202
+ study_list = create_paginated_study_list(request, f, user_profile)
203
+ enable_standard_names = are_standard_names_enabled()
204
+ return_structure = {
205
+ "filter": f,
206
+ "study_list": study_list,
207
+ "admin": admin,
208
+ "itemsPerPageForm": items_per_page_form,
209
+ "showStandardNames": enable_standard_names,
210
+ }
211
+ return user_profile, return_structure
212
+
213
+
214
+ @login_required
215
+ def dx_summary_list_filter(request):
216
+ """Obtain data for radiographic summary view."""
217
+ pid = bool(request.user.groups.filter(name="pidgroup"))
218
+ f = dx_acq_filter(request.GET, pid=pid)
219
+
220
+ user_profile, return_structure = generate_return_structure(request, f)
221
+ chart_options_form = dx_chart_form_processing(request, user_profile)
222
+ return_structure["chartOptionsForm"] = chart_options_form
223
+
224
+ if user_profile.plotCharts:
225
+ return_structure["required_charts"] = generate_required_dx_charts_list(
226
+ user_profile
227
+ )
228
+
229
+ return render(request, "remapp/dxfiltered.html", return_structure)
230
+
231
+
232
+ @login_required
233
+ def dx_detail_view(request, pk=None):
234
+ """Detail view for a DX study."""
235
+
236
+ try:
237
+ study = GeneralStudyModuleAttr.objects.get(pk=pk)
238
+ except:
239
+ messages.error(request, "That study was not found")
240
+ return redirect(reverse_lazy("dx_summary_list_filter"))
241
+
242
+ admin = create_admin_info(request)
243
+ enable_standard_names = are_standard_names_enabled()
244
+
245
+ projection_set = study.projectionxrayradiationdose_set.get()
246
+ events_all = projection_set.irradeventxraydata_set.select_related(
247
+ "anatomical_structure",
248
+ "laterality",
249
+ "target_region",
250
+ "image_view",
251
+ "patient_orientation_modifier_cid",
252
+ "acquisition_plane",
253
+ ).all()
254
+
255
+ accum_set = projection_set.accumxraydose_set.all()
256
+ # accum_integrated = projection_set.accumxraydose_set.get().accumintegratedprojradiogdose_set.get()
257
+
258
+ return render(
259
+ request,
260
+ "remapp/dxdetail.html",
261
+ {
262
+ "generalstudymoduleattr": study,
263
+ "admin": admin,
264
+ "projection_set": projection_set,
265
+ "events_all": events_all,
266
+ "accum_set": accum_set,
267
+ "showStandardNames": enable_standard_names,
268
+ },
269
+ )
270
+
271
+
272
+ @login_required
273
+ def rf_summary_list_filter(request):
274
+ """Obtain data for radiographic summary view."""
275
+
276
+ enable_standard_names = are_standard_names_enabled()
277
+ queryset = (
278
+ GeneralStudyModuleAttr.objects.filter(modality_type="RF")
279
+ .order_by("-study_date", "-study_time")
280
+ .distinct()
281
+ )
282
+
283
+ if request.user.groups.filter(name="pidgroup"):
284
+ if enable_standard_names:
285
+ f = RFFilterPlusPidPlusStdNames(
286
+ request.GET,
287
+ queryset=queryset,
288
+ )
289
+ else:
290
+ f = RFFilterPlusPid(
291
+ request.GET,
292
+ queryset=queryset,
293
+ )
294
+ else:
295
+ if enable_standard_names:
296
+ f = RFFilterPlusStdNames(
297
+ request.GET,
298
+ queryset=queryset,
299
+ )
300
+ else:
301
+ f = RFSummaryListFilter(
302
+ request.GET,
303
+ queryset=queryset,
304
+ )
305
+
306
+ user_profile, return_structure = generate_return_structure(request, f)
307
+ chart_options_form = rf_chart_form_processing(request, user_profile)
308
+
309
+ # Import total DAP and total dose at reference point alert levels. Create with default values if not found.
310
+ try:
311
+ HighDoseMetricAlertSettings.objects.get()
312
+ except ObjectDoesNotExist:
313
+ HighDoseMetricAlertSettings.objects.create()
314
+ alert_levels = HighDoseMetricAlertSettings.objects.values(
315
+ "show_accum_dose_over_delta_weeks",
316
+ "alert_total_dap_rf",
317
+ "alert_total_rp_dose_rf",
318
+ "accum_dose_delta_weeks",
319
+ )[0]
320
+
321
+ return_structure["chartOptionsForm"] = chart_options_form
322
+ return_structure["alertLevels"] = alert_levels
323
+
324
+ if user_profile.plotCharts:
325
+ return_structure["required_charts"] = generate_required_rf_charts_list(
326
+ user_profile
327
+ )
328
+
329
+ return render(request, "remapp/rffiltered.html", return_structure)
330
+
331
+
332
+ @login_required
333
+ def rf_detail_view(request, pk=None):
334
+ """Detail view for an RF study."""
335
+
336
+ enable_standard_names = are_standard_names_enabled()
337
+
338
+ try:
339
+ study = GeneralStudyModuleAttr.objects.get(pk=pk)
340
+ except ObjectDoesNotExist:
341
+ messages.error(request, "That study was not found")
342
+ return redirect(reverse_lazy("rf_summary_list_filter"))
343
+
344
+ # get the totals
345
+ irradiation_types = [("Fluoroscopy",), ("Acquisition",)]
346
+ fluoro_dap_total = Decimal(0)
347
+ fluoro_rp_total = Decimal(0)
348
+ acq_dap_total = Decimal(0)
349
+ acq_rp_total = Decimal(0)
350
+ stu_dose_totals = [(0, 0), (0, 0)]
351
+ stu_time_totals = [0, 0]
352
+ total_dap = 0
353
+ total_dose = 0
354
+ # Iterate over the planes (for bi-plane systems, for single plane systems there is only one)
355
+ projection_xray_dose_set = study.projectionxrayradiationdose_set.get()
356
+ accumxraydose_set_all_planes = (
357
+ projection_xray_dose_set.accumxraydose_set.select_related(
358
+ "acquisition_plane"
359
+ ).all()
360
+ )
361
+ events_all = projection_xray_dose_set.irradeventxraydata_set.select_related(
362
+ "irradiation_event_type",
363
+ "patient_table_relationship_cid",
364
+ "patient_orientation_cid",
365
+ "patient_orientation_modifier_cid",
366
+ "acquisition_plane",
367
+ ).all()
368
+
369
+ for dose_ds in accumxraydose_set_all_planes:
370
+ accum_dose_ds = dose_ds.accumprojxraydose_set.get()
371
+ try:
372
+ fluoro_dap_total += accum_dose_ds.fluoro_gym2_to_cgycm2()
373
+ except TypeError:
374
+ pass
375
+ try:
376
+ fluoro_rp_total += accum_dose_ds.fluoro_dose_rp_total
377
+ except TypeError:
378
+ pass
379
+ try:
380
+ acq_dap_total += accum_dose_ds.acq_gym2_to_cgycm2()
381
+ except TypeError:
382
+ pass
383
+ try:
384
+ acq_rp_total += accum_dose_ds.acquisition_dose_rp_total
385
+ except TypeError:
386
+ pass
387
+ stu_dose_totals[0] = (fluoro_dap_total, fluoro_rp_total)
388
+ stu_dose_totals[1] = (acq_dap_total, acq_rp_total)
389
+ try:
390
+ stu_time_totals[0] = stu_time_totals[0] + accum_dose_ds.total_fluoro_time
391
+ except TypeError:
392
+ pass
393
+ try:
394
+ stu_time_totals[1] = (
395
+ stu_time_totals[1] + accum_dose_ds.total_acquisition_time
396
+ )
397
+ except TypeError:
398
+ pass
399
+ accum_integrated = (
400
+ accum_dose_ds.accumulated_xray_dose.accumintegratedprojradiogdose_set.get()
401
+ )
402
+ try:
403
+ total_dap = total_dap + accum_integrated.dose_area_product_total
404
+ except TypeError:
405
+ pass
406
+ try:
407
+ total_dose = total_dose + accum_dose_ds.dose_rp_total
408
+ except TypeError:
409
+ pass
410
+
411
+ # get info for different Acquisition Types
412
+ stu_inc_totals = ( # pylint: disable=line-too-long
413
+ GeneralStudyModuleAttr.objects.filter(
414
+ pk=pk,
415
+ projectionxrayradiationdose__irradeventxraydata__irradiation_event_type__code_meaning__contains="Acquisition",
416
+ )
417
+ .annotate(
418
+ sum_dap=Sum(
419
+ "projectionxrayradiationdose__irradeventxraydata__dose_area_product"
420
+ )
421
+ * 1000000,
422
+ sum_dose_rp=Sum(
423
+ "projectionxrayradiationdose__irradeventxraydata__irradeventxraysourcedata__dose_rp"
424
+ ),
425
+ )
426
+ .order_by(
427
+ "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type"
428
+ )
429
+ )
430
+ stu_dose_totals.extend(
431
+ stu_inc_totals.values_list("sum_dap", "sum_dose_rp").order_by(
432
+ "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type"
433
+ )
434
+ )
435
+ acq_irr_types = (
436
+ stu_inc_totals.values_list(
437
+ "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type__code_meaning"
438
+ )
439
+ .order_by(
440
+ "projectionxrayradiationdose__irradeventxraydata__irradiation_event_type"
441
+ )
442
+ .distinct()
443
+ )
444
+ # stu_time_totals = [None] * len(stu_irr_types)
445
+ for _, irr_type in enumerate(acq_irr_types):
446
+ stu_time_totals.append( # pylint: disable=line-too-long
447
+ list(
448
+ GeneralStudyModuleAttr.objects.filter(
449
+ pk=pk,
450
+ projectionxrayradiationdose__irradeventxraydata__irradiation_event_type__code_meaning=irr_type[
451
+ 0
452
+ ],
453
+ )
454
+ .aggregate(
455
+ Sum(
456
+ "projectionxrayradiationdose__irradeventxraydata__irradeventxraysourcedata__irradiation_duration"
457
+ )
458
+ )
459
+ .values()
460
+ )[0]
461
+ )
462
+ irradiation_types.extend([("- " + acq_type[0],) for acq_type in acq_irr_types])
463
+
464
+ # Add the study totals
465
+ irradiation_types.append(("Total",))
466
+ stu_dose_totals.append((total_dap * 1000000, total_dose))
467
+ # does total duration (summed over fluoroscopy and acquisitions) means something?
468
+ stu_time_totals.append(stu_time_totals[0] + stu_time_totals[1])
469
+
470
+ study_totals = np.column_stack(
471
+ (irradiation_types, stu_dose_totals, stu_time_totals)
472
+ ).tolist()
473
+
474
+ try:
475
+ SkinDoseMapCalcSettings.objects.get()
476
+ except ObjectDoesNotExist:
477
+ SkinDoseMapCalcSettings.objects.create()
478
+
479
+ # Import total DAP and total dose at reference point alert levels. Create with default values if not found.
480
+ try:
481
+ HighDoseMetricAlertSettings.objects.get()
482
+ except ObjectDoesNotExist:
483
+ HighDoseMetricAlertSettings.objects.create()
484
+ alert_levels = HighDoseMetricAlertSettings.objects.values(
485
+ "show_accum_dose_over_delta_weeks",
486
+ "alert_total_dap_rf",
487
+ "alert_total_rp_dose_rf",
488
+ "accum_dose_delta_weeks",
489
+ )[0]
490
+
491
+ # Obtain the studies that are within delta weeks if needed
492
+ if alert_levels["show_accum_dose_over_delta_weeks"]:
493
+ patient_id = study.patientmoduleattr_set.values_list("patient_id", flat=True)[0]
494
+ if patient_id:
495
+ study_date = study.study_date
496
+ week_delta = HighDoseMetricAlertSettings.objects.values_list(
497
+ "accum_dose_delta_weeks", flat=True
498
+ )[0]
499
+ oldest_date = study_date - timedelta(weeks=week_delta)
500
+ included_studies = GeneralStudyModuleAttr.objects.filter(
501
+ modality_type="RF",
502
+ patientmoduleattr__patient_id=patient_id,
503
+ study_date__range=[oldest_date, study_date],
504
+ )
505
+ else:
506
+ included_studies = None
507
+ else:
508
+ included_studies = None
509
+
510
+ admin = create_admin_info(request)
511
+ admin["enable_skin_dose_maps"] = SkinDoseMapCalcSettings.objects.values_list(
512
+ "enable_skin_dose_maps", flat=True
513
+ )[0]
514
+
515
+ for group in request.user.groups.all():
516
+ admin[group.name] = True
517
+
518
+ return render(
519
+ request,
520
+ "remapp/rfdetail.html",
521
+ {
522
+ "generalstudymoduleattr": study,
523
+ "admin": admin,
524
+ "study_totals": study_totals,
525
+ "projection_xray_dose_set": projection_xray_dose_set,
526
+ "accumxraydose_set_all_planes": accumxraydose_set_all_planes,
527
+ "events_all": events_all,
528
+ "alert_levels": alert_levels,
529
+ "studies_in_week_delta": included_studies,
530
+ "showStandardNames": enable_standard_names,
531
+ },
532
+ )
533
+
534
+
535
+ @login_required
536
+ def rf_detail_view_skin_map(request, pk=None):
537
+ """View to calculate a skin dose map."""
538
+ try:
539
+ GeneralStudyModuleAttr.objects.get(pk=pk)
540
+ except ObjectDoesNotExist:
541
+ messages.error(request, "That study was not found")
542
+ return redirect(reverse_lazy("rf_summary_list_filter"))
543
+
544
+ return_structure = {}
545
+
546
+ # Get the study
547
+ study = GeneralStudyModuleAttr.objects.get(pk=pk)
548
+
549
+ # Find the latest task corresponding to this study. This is done in two
550
+ # stages because using .latest("task_type") on an empty queryset throws
551
+ # a DoesNotExist error
552
+ matching_latest_task = None
553
+ matching_tasks = BackgroundTask.objects.filter(
554
+ task_type="make_skin_map",
555
+ info__contains=pk,
556
+ )
557
+ if matching_tasks:
558
+ matching_latest_task = matching_tasks.latest("task_type")
559
+
560
+ latest_task_failed = False
561
+ if matching_latest_task:
562
+ if (
563
+ matching_latest_task.error is not None
564
+ ): # Avoid TypeError in next line if error is None
565
+ if (
566
+ matching_latest_task.completed_successfully is False
567
+ and "failed" in matching_latest_task.error
568
+ ):
569
+ latest_task_failed = True
570
+
571
+ # Check if skin dose maps are enabled for the x-ray system used for the study
572
+ skin_maps_enabled = skin_dose_maps_enabled_for_xray_system(study)
573
+ if skin_maps_enabled is False:
574
+ # Some code to return something that says they are disabled for this system
575
+ return_structure["disabled_skin_maps"] = True
576
+
577
+ elif (
578
+ latest_task_failed
579
+ and "force_recalculation" not in request.resolver_match.url_name
580
+ ):
581
+ if (
582
+ matching_latest_task.completed_successfully is False
583
+ and "failed" in matching_latest_task.error
584
+ ):
585
+ return_structure["skin_map_calculation_failed"] = True
586
+
587
+ # Find out if there is a task running to re-calculate the skin dose map for this study
588
+ matching_ongoing_task = BackgroundTask.objects.filter(
589
+ task_type="make_skin_map", info__contains=pk, complete=False
590
+ )
591
+
592
+ # Set the skin_map_progress and in_progress entries if there is a match to a running task.
593
+ if matching_ongoing_task.count() != 0:
594
+ return_structure["skin_map_progress"] = (
595
+ matching_ongoing_task.values_list("info", flat=True)[0].split(
596
+ "irradiation ", 1
597
+ )[1]
598
+ )
599
+
600
+ return_structure["in_progress"] = True
601
+
602
+ else:
603
+ # Check to see if there is already a skin map pickle with the same study ID.
604
+ try:
605
+ study_date = GeneralStudyModuleAttr.objects.get(pk=pk).study_date
606
+ if study_date:
607
+ skin_map_path = os.path.join(
608
+ settings.MEDIA_ROOT,
609
+ "skin_maps",
610
+ "{0:0>4}".format(study_date.year),
611
+ "{0:0>2}".format(study_date.month),
612
+ "{0:0>2}".format(study_date.day),
613
+ "skin_map_" + str(pk) + ".p",
614
+ )
615
+ else:
616
+ skin_map_path = os.path.join(
617
+ settings.MEDIA_ROOT, "skin_maps", "skin_map_" + str(pk) + ".p"
618
+ )
619
+ except:
620
+ skin_map_path = os.path.join(
621
+ settings.MEDIA_ROOT, "skin_maps", "skin_map_" + str(pk) + ".p"
622
+ )
623
+
624
+ # If patient weight is missing from the database then db_pat_mass will be undefined
625
+ try:
626
+ db_pat_mass = float(
627
+ GeneralStudyModuleAttr.objects.get(pk=pk)
628
+ .patientstudymoduleattr_set.get()
629
+ .patient_weight
630
+ )
631
+ except (ValueError, TypeError):
632
+ db_pat_mass = 73.2
633
+ if not db_pat_mass:
634
+ db_pat_mass = 73.2
635
+
636
+ # If patient weight is missing from the database then db_pat_mass will be undefined
637
+ try:
638
+ db_pat_height = (
639
+ float(
640
+ GeneralStudyModuleAttr.objects.get(pk=pk)
641
+ .patientstudymoduleattr_set.get()
642
+ .patient_size
643
+ )
644
+ * 100
645
+ )
646
+ except (ValueError, TypeError):
647
+ db_pat_height = 178.6
648
+ if not db_pat_height:
649
+ db_pat_height = 178.6
650
+
651
+ loaded_existing_data = False
652
+ pat_mass_unchanged = False
653
+ pat_height_unchanged = False
654
+
655
+ return_structure["in_progress"] = False
656
+
657
+ if os.path.exists(skin_map_path):
658
+ with gzip.open(skin_map_path, "rb") as f:
659
+ existing_skin_map_data = pickle.load(f) # nosec
660
+ try:
661
+ if existing_skin_map_data["skin_map_version"] == __skin_map_version__:
662
+ # Round the float values to 1 decimal place and convert to string before comparing
663
+ if str(round(existing_skin_map_data["patient_height"], 1)) == str(
664
+ round(db_pat_height, 1)
665
+ ):
666
+ pat_height_unchanged = True
667
+
668
+ # Round the float values to 1 decimal place and convert to string before comparing
669
+ if str(round(existing_skin_map_data["patient_mass"], 1)) == str(
670
+ round(db_pat_mass, 1)
671
+ ):
672
+ pat_mass_unchanged = True
673
+
674
+ if pat_height_unchanged and pat_mass_unchanged:
675
+ return_structure = existing_skin_map_data
676
+ return_structure["in_progress"] = False
677
+ loaded_existing_data = True
678
+ except KeyError:
679
+ pass
680
+
681
+ if not loaded_existing_data:
682
+ # Check to see if there is already a background task running to calculate a skin dose map for this study.
683
+ # Need to have a Django query that matches the following SQL:
684
+ # SELECT info
685
+ # FROM remapp_backgroundtask
686
+ # WHERE task_type='make_skin_map' [just make_skin_map tasks]
687
+ # AND info LIKE '%1880069%' [info contains the pk of the study, 1880069 in this case]
688
+ # AND complete=FALSE; [it is not yet complete]
689
+ #
690
+ # If there are no rows returned from the above query then there is not already a job being run to calculate
691
+ # the skin dose map for this study, and we can go ahead and create a background task to run it.
692
+
693
+ # The following line is equivalent to the above SQL:
694
+ matching_ongoing_task = BackgroundTask.objects.filter(
695
+ task_type="make_skin_map", info__contains=pk, complete=False
696
+ )
697
+
698
+ # Only run make_skin_map if matching_ongoing_task is empty.
699
+ if matching_ongoing_task.count() == 0:
700
+ run_in_background_with_limits(
701
+ make_skin_map,
702
+ "make_skin_map",
703
+ 0,
704
+ {"make_skin_map": 1},
705
+ pk,
706
+ )
707
+ else:
708
+ return_structure["skin_map_progress"] = (
709
+ matching_ongoing_task.values_list("info", flat=True)[0].split(
710
+ "irradiation ", 1
711
+ )[1]
712
+ )
713
+
714
+ return_structure["in_progress"] = True
715
+
716
+ return_structure["primary_key"] = pk
717
+ return JsonResponse(return_structure, safe=False)
718
+
719
+
720
+ @login_required
721
+ def nm_summary_list_filter(request):
722
+ """Obtain data for NM summary view."""
723
+ pid = bool(request.user.groups.filter(name="pidgroup"))
724
+ f = nm_filter(request.GET, pid=pid)
725
+
726
+ user_profile, return_structure = generate_return_structure(request, f)
727
+ chart_options_form = nm_chart_form_processing(request, user_profile)
728
+ return_structure["chartOptionsForm"] = chart_options_form
729
+
730
+ if user_profile.plotCharts:
731
+ return_structure["required_charts"] = generate_required_nm_charts_list(
732
+ user_profile
733
+ )
734
+
735
+ return render(request, "remapp/nmfiltered.html", return_structure)
736
+
737
+
738
+ @login_required
739
+ def nm_detail_view(request, pk=None):
740
+ """Detail view for a NM study."""
741
+ try:
742
+ study = GeneralStudyModuleAttr.objects.get(pk=pk)
743
+ except ObjectDoesNotExist:
744
+ messages.error(request, "That study was not found")
745
+ return redirect(reverse_lazy("nm_summary_list_filter"))
746
+
747
+ associated_ct = GeneralStudyModuleAttr.objects.filter(
748
+ Q(study_instance_uid=study.study_instance_uid) & Q(modality_type="CT")
749
+ ).first()
750
+
751
+ admin = create_admin_info(request)
752
+ enable_standard_names = are_standard_names_enabled()
753
+
754
+ return render(
755
+ request,
756
+ "remapp/nmdetail.html",
757
+ {
758
+ "generalstudymoduleattr": study,
759
+ "admin": admin,
760
+ "associated_ct": associated_ct,
761
+ "showStandardNames": enable_standard_names,
762
+ },
763
+ )
764
+
765
+
766
+ @login_required
767
+ def ct_summary_list_filter(request):
768
+ """Obtain data for CT summary view."""
769
+ pid = bool(request.user.groups.filter(name="pidgroup"))
770
+ f = ct_acq_filter(request.GET, pid=pid)
771
+
772
+ user_profile, return_structure = generate_return_structure(request, f)
773
+ chart_options_form = ct_chart_form_processing(request, user_profile)
774
+ return_structure["chartOptionsForm"] = chart_options_form
775
+
776
+ if user_profile.plotCharts:
777
+ return_structure["required_charts"] = generate_required_ct_charts_list(
778
+ user_profile
779
+ )
780
+
781
+ return render(request, "remapp/ctfiltered.html", return_structure)
782
+
783
+
784
+ @login_required
785
+ def ct_detail_view(request, pk=None):
786
+ """Detail view for a CT study."""
787
+
788
+ enable_standard_names = are_standard_names_enabled()
789
+
790
+ try:
791
+ study = GeneralStudyModuleAttr.objects.get(pk=pk)
792
+ except ObjectDoesNotExist:
793
+ messages.error(request, "That study was not found")
794
+ return redirect(reverse_lazy("ct_summary_list_filter"))
795
+
796
+ events_all = (
797
+ study.ctradiationdose_set.get()
798
+ .ctirradiationeventdata_set.select_related(
799
+ "ct_acquisition_type", "ctdiw_phantom_type"
800
+ )
801
+ .order_by("pk")
802
+ )
803
+
804
+ associated_nm = GeneralStudyModuleAttr.objects.filter(
805
+ Q(study_instance_uid=study.study_instance_uid) & Q(modality_type="NM")
806
+ ).first()
807
+
808
+ admin = create_admin_info(request)
809
+
810
+ return render(
811
+ request,
812
+ "remapp/ctdetail.html",
813
+ {
814
+ "generalstudymoduleattr": study,
815
+ "admin": admin,
816
+ "events_all": events_all,
817
+ "associated_nm": associated_nm,
818
+ "showStandardNames": enable_standard_names,
819
+ },
820
+ )
821
+
822
+
823
+ @login_required
824
+ def mg_summary_list_filter(request):
825
+ """Mammography data for summary view."""
826
+
827
+ enable_standard_names = are_standard_names_enabled()
828
+ filter_data = request.GET.copy()
829
+ if "page" in filter_data:
830
+ del filter_data["page"]
831
+
832
+ queryset = (
833
+ GeneralStudyModuleAttr.objects.filter(modality_type="MG")
834
+ .order_by("-study_date", "-study_time")
835
+ .distinct()
836
+ )
837
+
838
+ if request.user.groups.filter(name="pidgroup"):
839
+ if enable_standard_names:
840
+ f = MGFilterPlusPidPlusStdNames(
841
+ filter_data,
842
+ queryset=queryset,
843
+ )
844
+ else:
845
+ f = MGFilterPlusPid(
846
+ filter_data,
847
+ queryset=queryset,
848
+ )
849
+ else:
850
+ if enable_standard_names:
851
+ f = MGFilterPlusStdNames(
852
+ filter_data,
853
+ queryset=queryset,
854
+ )
855
+ else:
856
+ f = MGSummaryListFilter(
857
+ filter_data,
858
+ queryset=queryset,
859
+ )
860
+
861
+ user_profile, return_structure = generate_return_structure(request, f)
862
+ chart_options_form = mg_chart_form_processing(request, user_profile)
863
+ return_structure["chartOptionsForm"] = chart_options_form
864
+
865
+ if user_profile.plotCharts:
866
+ return_structure["required_charts"] = generate_required_mg_charts_list(
867
+ user_profile
868
+ )
869
+
870
+ return render(request, "remapp/mgfiltered.html", return_structure)
871
+
872
+
873
+ @login_required
874
+ def mg_detail_view(request, pk=None):
875
+ """Detail view for a CT study."""
876
+
877
+ enable_standard_names = are_standard_names_enabled()
878
+
879
+ try:
880
+ study = GeneralStudyModuleAttr.objects.get(pk=pk)
881
+ except:
882
+ messages.error(request, "That study was not found")
883
+ return redirect(reverse_lazy("mg_summary_list_filter"))
884
+
885
+ admin = create_admin_info(request)
886
+
887
+ projection_xray_dose_set = study.projectionxrayradiationdose_set.get()
888
+ accum_mammo_set = (
889
+ projection_xray_dose_set.accumxraydose_set.get()
890
+ .accummammographyxraydose_set.select_related("laterality")
891
+ .all()
892
+ )
893
+ events_all = projection_xray_dose_set.irradeventxraydata_set.select_related(
894
+ "laterality", "image_view"
895
+ ).all()
896
+
897
+ return render(
898
+ request,
899
+ "remapp/mgdetail.html",
900
+ {
901
+ "generalstudymoduleattr": study,
902
+ "admin": admin,
903
+ "projection_xray_dose_set": projection_xray_dose_set,
904
+ "accum_mammo_set": accum_mammo_set,
905
+ "events_all": events_all,
906
+ "showStandardNames": enable_standard_names,
907
+ },
908
+ )
909
+
910
+
911
+ def openrem_home(request):
912
+ try:
913
+ HomePageAdminSettings.objects.get()
914
+ except ObjectDoesNotExist:
915
+ HomePageAdminSettings.objects.create()
916
+
917
+ test_dicom_store_settings = DicomDeleteSettings.objects.all()
918
+ if not test_dicom_store_settings:
919
+ DicomDeleteSettings.objects.create()
920
+
921
+ if not Group.objects.filter(name="viewgroup"):
922
+ vg = Group(name="viewgroup")
923
+ vg.save()
924
+ if not Group.objects.filter(name="exportgroup"):
925
+ eg = Group(name="exportgroup")
926
+ eg.save()
927
+ if not Group.objects.filter(name="admingroup"):
928
+ ag = Group(name="admingroup")
929
+ ag.save()
930
+ if not Group.objects.filter(name="pidgroup"):
931
+ pg = Group(name="pidgroup")
932
+ pg.save()
933
+ if not Group.objects.filter(name="importsizegroup"):
934
+ sg = Group(name="importsizegroup")
935
+ sg.save()
936
+ if not Group.objects.filter(name="importqrgroup"):
937
+ qg = Group(name="importqrgroup")
938
+ qg.save()
939
+
940
+ id_settings = PatientIDSettings.objects.all()
941
+ if not id_settings:
942
+ PatientIDSettings.objects.create()
943
+
944
+ users_in_groups = {"any": False, "admin": False}
945
+ for g in Group.objects.all():
946
+ if Group.objects.get(name=g).user_set.all():
947
+ users_in_groups["any"] = True
948
+ if g.name == "admingroup":
949
+ users_in_groups["admin"] = True
950
+
951
+ try:
952
+ # See if the user has plot settings in userprofile
953
+ user_profile = request.user.userprofile
954
+ except (ObjectDoesNotExist, AttributeError):
955
+ # Attribute error needed for AnonymousUser, who doesn't have a userprofile attribute
956
+ if request.user.is_authenticated:
957
+ # Create a default userprofile for the user if one doesn't exist
958
+ create_user_profile(
959
+ sender=request.user, instance=request.user, created=True
960
+ )
961
+ user_profile = request.user.userprofile
962
+
963
+ allstudies = GeneralStudyModuleAttr.objects.all()
964
+ study_counts = allstudies.aggregate(
965
+ all_count=Count("pk"),
966
+ ct_count=Count("pk", filter=Q(modality_type="CT")),
967
+ rf_count=Count("pk", filter=Q(modality_type="RF")),
968
+ mg_count=Count("pk", filter=Q(modality_type="MG")),
969
+ nm_count=Count("pk", filter=Q(modality_type="NM")),
970
+ dx_count=Count("pk", filter=Q(modality_type__in=["DX", "CR", "PX"])),
971
+ )
972
+
973
+ modalities = OrderedDict()
974
+ if study_counts["ct_count"]:
975
+ modalities["CT"] = {"name": _("CT"), "count": study_counts["ct_count"]}
976
+ if study_counts["rf_count"]:
977
+ modalities["RF"] = {"name": _("Fluoroscopy"), "count": study_counts["rf_count"]}
978
+ if study_counts["mg_count"]:
979
+ modalities["MG"] = {"name": _("Mammography"), "count": study_counts["mg_count"]}
980
+ if study_counts["dx_count"]:
981
+ modalities["DX"] = {"name": _("Radiography"), "count": study_counts["dx_count"]}
982
+ if study_counts["nm_count"]:
983
+ modalities["NM"] = {
984
+ "name": _("Nuclear Medicine"),
985
+ "count": study_counts["nm_count"],
986
+ }
987
+
988
+ homedata = {"total": study_counts["all_count"]}
989
+
990
+ # Determine whether to calculate workload settings
991
+ display_workload_stats = HomePageAdminSettings.objects.values_list(
992
+ "enable_workload_stats", flat=True
993
+ )[0]
994
+ home_config = {"display_workload_stats": display_workload_stats}
995
+ if display_workload_stats:
996
+ if request.user.is_authenticated:
997
+ home_config["day_delta_a"] = user_profile.summaryWorkloadDaysA
998
+ home_config["day_delta_b"] = user_profile.summaryWorkloadDaysB
999
+ else:
1000
+ home_config["day_delta_a"] = 7
1001
+ home_config["day_delta_b"] = 28
1002
+
1003
+ admin = dict(openremversion=__version__, docsversion=__docs_version__)
1004
+
1005
+ for group in request.user.groups.all():
1006
+ admin[group.name] = True
1007
+
1008
+ admin_questions = {}
1009
+ admin_questions_true = False
1010
+ if request.user.groups.filter(name="admingroup"):
1011
+ not_patient_indicator_question = (
1012
+ AdminTaskQuestions.get_solo().ask_revert_to_074_question
1013
+ )
1014
+ admin_questions["not_patient_indicator_question"] = (
1015
+ not_patient_indicator_question
1016
+ )
1017
+ # if any(value for value in admin_questions.itervalues()):
1018
+ # admin_questions_true = True # Don't know why this doesn't work
1019
+ if not_patient_indicator_question:
1020
+ admin_questions_true = True # Doing this instead
1021
+
1022
+ upgrade_status = UpgradeStatus.get_solo()
1023
+ migration_complete = upgrade_status.from_0_9_1_summary_fields
1024
+ if not migration_complete and homedata["total"] == 0:
1025
+ upgrade_status.from_0_9_1_summary_fields = True
1026
+ upgrade_status.save()
1027
+ migration_complete = True
1028
+
1029
+ # from remapp.tools.send_high_dose_alert_emails import send_rf_high_dose_alert_email
1030
+ # send_rf_high_dose_alert_email(881397)
1031
+ # send_rf_high_dose_alert_email(417973)
1032
+ # # Send a test e-mail
1033
+ # from django.core.mail import send_mail
1034
+ # from openremproject import settings
1035
+ # from remapp.models import HighDoseMetricAlertSettings
1036
+ # from django.contrib.auth.models import User
1037
+ #
1038
+ # try:
1039
+ # HighDoseMetricAlertSettings.objects.get()
1040
+ # except ObjectDoesNotExist:
1041
+ # HighDoseMetricAlertSettings.objects.create()
1042
+ #
1043
+ # send_alert_emails = HighDoseMetricAlertSettings.objects.values_list(
1044
+ # 'send_high_dose_metric_alert_emails', flat=True
1045
+ # )[0]
1046
+ # if send_alert_emails:
1047
+ # recipients = User.objects.filter(
1048
+ # highdosemetricalertrecipients__receive_high_dose_metric_alerts=True
1049
+ # ).values_list('email', flat=True)
1050
+ # send_mail('OpenREM high dose alert test',
1051
+ # 'This is a test for high dose alert e-mails from OpenREM',
1052
+ # settings.EMAIL_DOSE_ALERT_SENDER,
1053
+ # recipients,
1054
+ # fail_silently=False)
1055
+ # # End of sending a test e-mail
1056
+
1057
+ return render(
1058
+ request,
1059
+ "remapp/home.html",
1060
+ {
1061
+ "homedata": homedata,
1062
+ "admin": admin,
1063
+ "users_in_groups": users_in_groups,
1064
+ "admin_questions": admin_questions,
1065
+ "admin_questions_true": admin_questions_true,
1066
+ "modalities": modalities,
1067
+ "home_config": home_config,
1068
+ "migration_complete": migration_complete,
1069
+ },
1070
+ )
1071
+
1072
+
1073
+ @csrf_exempt
1074
+ def update_latest_studies(request):
1075
+ """
1076
+ AJAX function to calculate the latest studies for each display name for a particular modality.
1077
+
1078
+ :param request: Request object
1079
+ :return: HTML table of modalities
1080
+ """
1081
+ if request.is_ajax():
1082
+ data = request.POST
1083
+ modality = data.get("modality")
1084
+ if modality == "DX":
1085
+ studies = GeneralStudyModuleAttr.objects.filter(
1086
+ Q(modality_type__in=["DX", "CR", "PX"])
1087
+ ).all()
1088
+ else:
1089
+ studies = GeneralStudyModuleAttr.objects.filter(
1090
+ modality_type=modality
1091
+ ).all()
1092
+
1093
+ today = datetime.now()
1094
+ study_data = (
1095
+ studies.values(
1096
+ "generalequipmentmoduleattr__unique_equipment_name__display_name"
1097
+ )
1098
+ .annotate(
1099
+ num_studies=Count("pk"),
1100
+ latest_entry_date_time=Max("test_date_time"),
1101
+ # timedelta=ExpressionWrapper(today - F("latest_entry_date_time"), output_field=DurationField()),
1102
+ )
1103
+ .order_by("-latest_entry_date_time")
1104
+ )
1105
+
1106
+ display_workload_stats = HomePageAdminSettings.objects.values_list(
1107
+ "enable_workload_stats", flat=True
1108
+ )[0]
1109
+ if request.user.is_authenticated:
1110
+ day_delta_a = request.user.userprofile.summaryWorkloadDaysA
1111
+ day_delta_b = request.user.userprofile.summaryWorkloadDaysB
1112
+ else:
1113
+ day_delta_a = 7
1114
+ day_delta_b = 28
1115
+
1116
+ date_a = today.date() - timedelta(days=day_delta_a)
1117
+ date_b = today.date() - timedelta(days=day_delta_b)
1118
+ if display_workload_stats:
1119
+ study_data = study_data.annotate(
1120
+ studies_since_delta_a=Count("pk", filter=Q(test_date_time__gte=date_a)),
1121
+ studies_since_delta_b=Count("pk", filter=Q(test_date_time__gte=date_b)),
1122
+ ).order_by("-latest_entry_date_time")
1123
+
1124
+ admin = {}
1125
+ for group in request.user.groups.all():
1126
+ admin[group.name] = True
1127
+
1128
+ template = "remapp/home-list-modalities.html"
1129
+
1130
+ home_config = {
1131
+ "display_workload_stats": display_workload_stats,
1132
+ "day_delta_a": day_delta_a,
1133
+ "day_delta_b": day_delta_b,
1134
+ "date_a": datetime.strftime(date_a, "%Y-%m-%d"),
1135
+ "date_b": datetime.strftime(date_b, "%Y-%m-%d"),
1136
+ }
1137
+
1138
+ return render(
1139
+ request,
1140
+ template,
1141
+ {
1142
+ "study_data": study_data,
1143
+ "modality": modality.lower(),
1144
+ "home_config": home_config,
1145
+ "admin": admin,
1146
+ },
1147
+ )