OpenREM 1.0.0b2__py3-none-any.whl → 1.0.0b3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- openrem/locale/de/LC_MESSAGES/django.po +1060 -1059
- openrem/locale/django.pot +973 -972
- openrem/locale/es_MX/LC_MESSAGES/django.po +1049 -1048
- openrem/locale/it/LC_MESSAGES/django.po +1044 -1043
- openrem/locale/lt/LC_MESSAGES/django.po +989 -988
- openrem/locale/nb_NO/LC_MESSAGES/django.po +985 -984
- openrem/locale/pt_BR/LC_MESSAGES/django.po +1003 -1002
- openrem/manage.py +10 -10
- openrem/openremproject/__init__.py +1 -1
- openrem/openremproject/local_settings.py.linux +128 -128
- openrem/openremproject/local_settings.py.windows +144 -144
- openrem/openremproject/local_settings.py.windows-sqlite3 +129 -129
- openrem/openremproject/settings.py +278 -278
- openrem/openremproject/urls.py +32 -32
- openrem/openremproject/wsgi.py.example +28 -28
- openrem/remapp/__init__.py +2 -2
- openrem/remapp/admin.py +31 -31
- openrem/remapp/exports/ct_export.py +780 -753
- openrem/remapp/exports/dx_export.py +817 -805
- openrem/remapp/exports/export_common.py +931 -951
- openrem/remapp/exports/export_common_pandas.py +2422 -0
- openrem/remapp/exports/exportviews.py +815 -860
- openrem/remapp/exports/mg_csv_nhsbsp.py +292 -292
- openrem/remapp/exports/mg_export.py +673 -510
- openrem/remapp/exports/nm_export.py +796 -575
- openrem/remapp/exports/rf_export.py +1418 -1431
- openrem/remapp/extractors/ct_philips.py +424 -414
- openrem/remapp/extractors/ct_toshiba.py +2116 -2108
- openrem/remapp/extractors/dx.py +1033 -952
- openrem/remapp/extractors/extract_common.py +817 -817
- openrem/remapp/extractors/import_views.py +426 -426
- openrem/remapp/extractors/mam.py +685 -672
- openrem/remapp/extractors/nm_image.py +439 -431
- openrem/remapp/extractors/ptsizecsv2db.py +368 -368
- openrem/remapp/extractors/rdsr.py +667 -654
- openrem/remapp/extractors/rdsr_methods.py +1771 -1768
- openrem/remapp/extractors/rrdsr_methods.py +630 -622
- openrem/remapp/fixtures/openskin_safelist.json +11 -11
- openrem/remapp/forms.py +2286 -2277
- openrem/remapp/interface/chart_functions.py +2412 -2393
- openrem/remapp/interface/mod_filters.py +1241 -1243
- openrem/remapp/migrations/0001_initial.py.1-0-upgrade +1043 -1043
- openrem/remapp/models.py +3418 -3407
- openrem/remapp/netdicom/dicomviews.py +681 -683
- openrem/remapp/netdicom/qrscu.py +2646 -2646
- openrem/remapp/netdicom/tools.py +134 -134
- openrem/remapp/static/css/bootstrap-theme.css +587 -587
- openrem/remapp/static/css/bootstrap-theme.min.css +4 -4
- openrem/remapp/static/css/bootstrap.css +6800 -6800
- openrem/remapp/static/css/bootstrap.min.css +4 -4
- openrem/remapp/static/css/datepicker3.css +790 -790
- openrem/remapp/static/css/jquery.qtip.min.css +2 -2
- openrem/remapp/static/css/openrem-extra.css +442 -442
- openrem/remapp/static/css/openrem.css +96 -96
- openrem/remapp/static/css/registration.css +34 -34
- openrem/remapp/static/fonts/glyphicons-halflings-regular.svg +287 -287
- openrem/remapp/static/js/bootstrap-datepicker.js +1671 -1671
- openrem/remapp/static/js/bootstrap.js +2363 -2363
- openrem/remapp/static/js/bootstrap.min.js +6 -6
- openrem/remapp/static/js/charts/chartCommonFunctions.js +75 -75
- openrem/remapp/static/js/charts/chartFullScreen.js +41 -41
- openrem/remapp/static/js/charts/ctChartAjax.js +331 -331
- openrem/remapp/static/js/charts/dxChartAjax.js +290 -290
- openrem/remapp/static/js/charts/mgChartAjax.js +144 -144
- openrem/remapp/static/js/charts/nmChartAjax.js +64 -64
- openrem/remapp/static/js/charts/plotly-2.35.2.min.js +8 -0
- openrem/remapp/static/js/charts/rfChartAjax.js +128 -128
- openrem/remapp/static/js/chroma.min.js +32 -32
- openrem/remapp/static/js/datepicker.js +5 -5
- openrem/remapp/static/js/dicom.js +115 -115
- openrem/remapp/static/js/django_reverse/reverse.js +13 -13
- openrem/remapp/static/js/formatDate.js +7 -7
- openrem/remapp/static/js/html5shiv.min.js +8 -8
- openrem/remapp/static/js/jquery-1.11.0.min.js +4 -4
- openrem/remapp/static/js/npm.js +12 -12
- openrem/remapp/static/js/respond.min.js +4 -4
- openrem/remapp/static/js/skin-dose-maps/jquery.qtip.min.js +4 -4
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dHUDObject.js +112 -112
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dObject.js +367 -367
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMap3dPersonObject.js +158 -158
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapColourScaleObject.js +153 -153
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapObject.js +367 -367
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping.js +584 -584
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMapping3d.js +255 -255
- openrem/remapp/static/js/skin-dose-maps/rfSkinDoseMappingAjax.js +267 -212
- openrem/remapp/static/js/skin-dose-maps/three.min.js +835 -835
- openrem/remapp/static/js/sorttable.js +495 -495
- openrem/remapp/templates/base.html +253 -253
- openrem/remapp/templates/registration/changepassword.html +25 -25
- openrem/remapp/templates/registration/changepassworddone.html +12 -12
- openrem/remapp/templates/registration/login.html +42 -42
- openrem/remapp/templates/remapp/backgroundtaskmaximumrows_form.html +29 -29
- openrem/remapp/templates/remapp/base.html +1 -1
- openrem/remapp/templates/remapp/ctdetail.html +235 -235
- openrem/remapp/templates/remapp/ctfiltered.html +310 -310
- openrem/remapp/templates/remapp/dicomdeletesettings_form.html +31 -31
- openrem/remapp/templates/remapp/dicomqr.html +147 -147
- openrem/remapp/templates/remapp/dicomquerydetails.html +83 -83
- openrem/remapp/templates/remapp/dicomqueryimages.html +49 -49
- openrem/remapp/templates/remapp/dicomqueryseries.html +109 -109
- openrem/remapp/templates/remapp/dicomquerysummary.html +48 -48
- openrem/remapp/templates/remapp/dicomremoteqr_confirm_delete.html +60 -60
- openrem/remapp/templates/remapp/dicomremoteqr_form.html +32 -32
- openrem/remapp/templates/remapp/dicomstorescp_confirm_delete.html +53 -53
- openrem/remapp/templates/remapp/dicomstorescp_form.html +48 -48
- openrem/remapp/templates/remapp/dicomsummary.html +257 -257
- openrem/remapp/templates/remapp/displaychartoptions.html +184 -184
- openrem/remapp/templates/remapp/displayhomepageoptions.html +57 -57
- openrem/remapp/templates/remapp/displayname-count.html +6 -6
- openrem/remapp/templates/remapp/displayname-last-date.html +3 -3
- openrem/remapp/templates/remapp/displayname-modality.html +86 -105
- openrem/remapp/templates/remapp/displayname-skinmap.html +18 -18
- openrem/remapp/templates/remapp/displaynameupdate.html +100 -100
- openrem/remapp/templates/remapp/displaynameview.html +222 -219
- openrem/remapp/templates/remapp/dxdetail.html +176 -176
- openrem/remapp/templates/remapp/dxfiltered.html +324 -324
- openrem/remapp/templates/remapp/exports-active.html +25 -25
- openrem/remapp/templates/remapp/exports-complete.html +35 -35
- openrem/remapp/templates/remapp/exports-error.html +26 -26
- openrem/remapp/templates/remapp/exports-queue.html +18 -18
- openrem/remapp/templates/remapp/exports.html +191 -191
- openrem/remapp/templates/remapp/failed_summary_list.html +27 -27
- openrem/remapp/templates/remapp/filteredbase.html +162 -162
- openrem/remapp/templates/remapp/highdosemetricalertsettings_form.html +76 -76
- openrem/remapp/templates/remapp/home-list-modalities.html +94 -94
- openrem/remapp/templates/remapp/home.html +202 -202
- openrem/remapp/templates/remapp/list_filters.html +24 -24
- openrem/remapp/templates/remapp/mgdetail.html +160 -138
- openrem/remapp/templates/remapp/mgfiltered.html +311 -311
- openrem/remapp/templates/remapp/nmdetail.html +300 -300
- openrem/remapp/templates/remapp/nmfiltered.html +255 -255
- openrem/remapp/templates/remapp/notpatient.html +190 -190
- openrem/remapp/templates/remapp/notpatientindicators_form_base.html +81 -81
- openrem/remapp/templates/remapp/notpatientindicatorsid_confirm_delete.html +54 -54
- openrem/remapp/templates/remapp/notpatientindicatorsid_form.html +23 -23
- openrem/remapp/templates/remapp/notpatientindicatorsname_confirm_delete.html +54 -54
- openrem/remapp/templates/remapp/notpatientindicatorsname_form.html +23 -23
- openrem/remapp/templates/remapp/notpatientindicatorsname_form_base.html +85 -85
- openrem/remapp/templates/remapp/openskinsafelist_add.html +130 -130
- openrem/remapp/templates/remapp/openskinsafelist_confirm_delete.html +100 -100
- openrem/remapp/templates/remapp/openskinsafelist_form.html +207 -207
- openrem/remapp/templates/remapp/patientidsettings_form.html +83 -83
- openrem/remapp/templates/remapp/populate_summary_progress.html +83 -83
- openrem/remapp/templates/remapp/populate_summary_progress_error.html +36 -36
- openrem/remapp/templates/remapp/review_failed_imports.html +157 -157
- openrem/remapp/templates/remapp/review_failed_study.html +41 -41
- openrem/remapp/templates/remapp/review_studies_delete_button.html +20 -20
- openrem/remapp/templates/remapp/review_study.html +19 -19
- openrem/remapp/templates/remapp/review_summary_list.html +245 -245
- openrem/remapp/templates/remapp/rf_dose_alert_email_template.html +14 -1
- openrem/remapp/templates/remapp/rfalertnotificationsview.html +59 -59
- openrem/remapp/templates/remapp/rfdetail.html +547 -543
- openrem/remapp/templates/remapp/rfdetailbase.html +18 -18
- openrem/remapp/templates/remapp/rffiltered.html +404 -404
- openrem/remapp/templates/remapp/sizeimports.html +119 -119
- openrem/remapp/templates/remapp/sizeprocess.html +96 -96
- openrem/remapp/templates/remapp/sizeupload.html +110 -110
- openrem/remapp/templates/remapp/skindosemapcalcsettings_form.html +28 -28
- openrem/remapp/templates/remapp/standardname-modality.html +69 -69
- openrem/remapp/templates/remapp/standardnames_confirm_delete.html +71 -71
- openrem/remapp/templates/remapp/standardnames_form.html +87 -87
- openrem/remapp/templates/remapp/standardnamesettings_form.html +41 -41
- openrem/remapp/templates/remapp/standardnamesrefreshall.html +92 -92
- openrem/remapp/templates/remapp/standardnameview.html +103 -103
- openrem/remapp/templates/remapp/study_confirm_delete.html +147 -147
- openrem/remapp/templates/remapp/task_admin.html +265 -265
- openrem/remapp/templates/remapp/tasks.html +76 -76
- openrem/remapp/templatetags/formfilters.py +13 -13
- openrem/remapp/templatetags/proper_paginate.py +38 -38
- openrem/remapp/templatetags/remappduration.py +36 -36
- openrem/remapp/templatetags/sigdig.py +38 -38
- openrem/remapp/templatetags/sort_class_property_value.py +15 -15
- openrem/remapp/templatetags/update_variable.py +20 -20
- openrem/remapp/templatetags/url_replace.py +25 -25
- openrem/remapp/tests/test_charts_common.py +202 -202
- openrem/remapp/tests/test_charts_ct.py +7111 -7111
- openrem/remapp/tests/test_charts_dx.py +3513 -3513
- openrem/remapp/tests/test_charts_mg.py +1116 -1115
- openrem/remapp/tests/test_dcmdatetime.py +189 -189
- openrem/remapp/tests/test_dicom_qr.py +2580 -2580
- openrem/remapp/tests/test_display_name.py +274 -274
- openrem/remapp/tests/test_export_ct_xlsx.py +272 -248
- openrem/remapp/tests/test_export_dx_xlsx.py +137 -134
- openrem/remapp/tests/test_export_mammo_csv.py +242 -242
- openrem/remapp/tests/test_export_rf_xlsx.py +246 -246
- openrem/remapp/tests/test_files/DX-Im-DRGEM.dcm +0 -0
- openrem/remapp/tests/test_files/MG-RDSR-GEPristina-2D.dcm +0 -0
- openrem/remapp/tests/test_files/MG-RDSR-GEPristina-DBT.dcm +0 -0
- openrem/remapp/tests/test_files/MG-RDSR-Giotto-DBT.dcm +0 -0
- openrem/remapp/tests/test_files/skin_map_alphenix.py +590 -590
- openrem/remapp/tests/test_files/skin_map_zee.py +354 -354
- openrem/remapp/tests/test_filters_ct.py +321 -321
- openrem/remapp/tests/test_filters_dx.py +92 -92
- openrem/remapp/tests/test_filters_mammo.py +183 -183
- openrem/remapp/tests/test_filters_rf.py +118 -118
- openrem/remapp/tests/test_get_values.py +72 -72
- openrem/remapp/tests/test_hash_id.py +65 -65
- openrem/remapp/tests/test_import_ct_esr_ge.py +3034 -3034
- openrem/remapp/tests/test_import_ct_philips_rdsr.py +42 -42
- openrem/remapp/tests/test_import_ct_rdsr_multiple.py +256 -256
- openrem/remapp/tests/test_import_ct_rdsr_siemens.py +827 -827
- openrem/remapp/tests/test_import_ct_rdsr_spectrumdynamics.py +91 -91
- openrem/remapp/tests/test_import_ct_rdsr_toshiba_dosecheck.py +67 -67
- openrem/remapp/tests/test_import_ct_rdsr_toshiba_multivaluesd.py +33 -33
- openrem/remapp/tests/test_import_ct_rdsr_toshiba_pixelmed.py +118 -118
- openrem/remapp/tests/test_import_ct_sc_philips.py +44 -44
- openrem/remapp/tests/test_import_dual_rdsr.py +110 -110
- openrem/remapp/tests/test_import_dx.py +1267 -1191
- openrem/remapp/tests/test_import_dx_rdsr.py +1250 -1253
- openrem/remapp/tests/test_import_mam.py +438 -438
- openrem/remapp/tests/test_import_mg_im_hol_proj.py +46 -46
- openrem/remapp/tests/test_import_mg_rdsr.py +586 -586
- openrem/remapp/tests/test_import_nm_image.py +420 -420
- openrem/remapp/tests/test_import_nm_siemens_rdsr.py +396 -396
- openrem/remapp/tests/test_import_px.py +161 -161
- openrem/remapp/tests/test_import_rf_rdsr.py +420 -418
- openrem/remapp/tests/test_missing_date.py +42 -42
- openrem/remapp/tests/test_not_patient.py +60 -60
- openrem/remapp/tests/test_openskin.py +272 -272
- openrem/remapp/tests/test_patient_id_settings.py +72 -72
- openrem/remapp/tests/test_pt_size_import.py +232 -232
- openrem/remapp/tests/test_rf_detail.py +113 -113
- openrem/remapp/tests/test_rf_high_dose_alert.py +361 -361
- openrem/remapp/tools/background.py +361 -361
- openrem/remapp/tools/check_standard_name_status.py +47 -0
- openrem/remapp/tools/check_uid.py +70 -70
- openrem/remapp/tools/dcmdatetime.py +248 -248
- openrem/remapp/tools/default_import.py +44 -47
- openrem/remapp/tools/get_values.py +230 -230
- openrem/remapp/tools/hash_id.py +58 -58
- openrem/remapp/tools/make_skin_map.py +448 -406
- openrem/remapp/tools/not_patient_indicators.py +72 -72
- openrem/remapp/tools/openskin/calc_exp_map.py +173 -173
- openrem/remapp/tools/openskin/geomclass.py +475 -475
- openrem/remapp/tools/openskin/geomfunc.py +433 -432
- openrem/remapp/tools/openskin/skinmap.py +417 -417
- openrem/remapp/tools/populate_summary.py +185 -193
- openrem/remapp/tools/save_skin_map_structure.py +73 -73
- openrem/remapp/tools/send_high_dose_alert_emails.py +238 -207
- openrem/remapp/urls.py +456 -448
- openrem/remapp/version.py +11 -11
- openrem/remapp/views.py +1147 -1052
- openrem/remapp/views_admin.py +3876 -3936
- openrem/remapp/views_charts_ct.py +2110 -2058
- openrem/remapp/views_charts_dx.py +1906 -1836
- openrem/remapp/views_charts_mg.py +1349 -1196
- openrem/remapp/views_charts_nm.py +535 -535
- openrem/remapp/views_charts_rf.py +1219 -1241
- openrem/remapp/views_openskin.py +379 -384
- openrem/sample-config/openrem-consumer.service +12 -12
- openrem/sample-config/openrem-gunicorn.service +13 -13
- openrem/sample-config/openrem-server +14 -13
- openrem/sample-config/openrem_orthanc_config_linux.lua +454 -454
- openrem/sample-config/openrem_orthanc_config_windows.lua +455 -455
- openrem/sample-config/queue-init.bat +73 -73
- openrem/scripts/openrem_ctphilips.py +25 -25
- openrem/scripts/openrem_cttoshiba.py +28 -28
- openrem/scripts/openrem_dx.py +22 -22
- openrem/scripts/openrem_mg.py +22 -22
- openrem/scripts/openrem_nm.py +22 -22
- openrem/scripts/openrem_ptsizecsv.py +17 -17
- openrem/scripts/openrem_qr.py +12 -12
- openrem/scripts/openrem_rdsr.py +25 -25
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/METADATA +39 -29
- openrem-1.0.0b3.dist-info/RECORD +379 -0
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/WHEEL +1 -1
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/COPYING-GPLv3 +674 -674
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info/licenses}/LICENSE +22 -22
- OpenREM-1.0.0b2.dist-info/RECORD +0 -373
- openrem/remapp/static/js/charts/plotly-2.17.1.min.js +0 -8
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ctphilips.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_cttoshiba.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_dx.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_mg.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_nm.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_ptsizecsv.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_qr.py +0 -0
- {OpenREM-1.0.0b2.data → openrem-1.0.0b3.data}/scripts/openrem_rdsr.py +0 -0
- {OpenREM-1.0.0b2.dist-info → openrem-1.0.0b3.dist-info}/top_level.txt +0 -0
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{% if admin.admingroup %}
|
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<a class="btn btn-default pull-right btn-sm" href="{% url 'notpatienid_add' %}" role="button">
|
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36
|
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Add ID patterns
|
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37
|
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</a>
|
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38
|
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{% endif %}
|
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|
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<h3 class="panel-title">ID matching patterns</h3>
|
|
40
|
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<div class="clearfix"></div>
|
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41
|
-
</div>
|
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42
|
-
<div class="panel-body">
|
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43
|
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{% if ids.count < 1 %}
|
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44
|
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<p>Nothing set yet, see below for examples, or to set the patterns to match the 0.7.4 release</p>
|
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45
|
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{% endif %}
|
|
46
|
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<table class="table table-bordered">
|
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47
|
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{% for id in ids %}
|
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|
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<tr>
|
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49
|
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<td> <code>{{ id.not_patient_id }}</code>
|
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50
|
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{% if admin.admingroup %}
|
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51
|
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<a href="{% url 'notpatientid_delete' pk=id.id %}" role="button" class="pull-right"> Delete</a>
|
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52
|
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<a href="{% url 'notpatientid_update' pk=id.id %}" role="button" class="pull-right">Modify </a>
|
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|
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{% endif %}
|
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|
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</td>
|
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55
|
-
</tr>
|
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|
-
{% endfor %}
|
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|
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</table>
|
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|
-
</div>
|
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59
|
-
</div>
|
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60
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</div>
|
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61
|
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<div class="col-md-5">
|
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62
|
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<div class="panel panel-primary">
|
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63
|
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<div class="panel-heading">
|
|
64
|
-
{% if admin.admingroup %}
|
|
65
|
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<a class="btn btn-default pull-right btn-sm" href="{% url 'notpatientname_add' %}" role="button">
|
|
66
|
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Add name patterns
|
|
67
|
-
</a>
|
|
68
|
-
{% endif %}
|
|
69
|
-
<h3 class="panel-title">Name matching patterns</h3>
|
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|
-
<div class="clearfix"></div>
|
|
71
|
-
</div>
|
|
72
|
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<div class="panel-body">
|
|
73
|
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{% if names.count < 1 %}
|
|
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|
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<p>Nothing set yet, see below for examples, or to set the patterns to match the 0.7.4 release</p>
|
|
75
|
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{% endif %}
|
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|
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<table class="table table-bordered">
|
|
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|
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{% for name in names %}
|
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78
|
-
<tr>
|
|
79
|
-
<td>
|
|
80
|
-
<code>{{ name.not_patient_name }}</code>
|
|
81
|
-
{% if admin.admingroup %}
|
|
82
|
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<a href="{% url 'notpatientname_delete' pk=name.id %}" role="button" class="pull-right"> Delete</a>
|
|
83
|
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<a href="{% url 'notpatientname_update' pk=name.id %}" role="button" class="pull-right">Modify </a>
|
|
84
|
-
{% endif %}
|
|
85
|
-
</td>
|
|
86
|
-
</tr>
|
|
87
|
-
{% endfor %}
|
|
88
|
-
</table>
|
|
89
|
-
</div>
|
|
90
|
-
</div>
|
|
91
|
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</div>
|
|
92
|
-
</div>
|
|
93
|
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<div class="row">
|
|
94
|
-
<div class="col-md-8 col-md-offset-2">
|
|
95
|
-
<p>
|
|
96
|
-
On import, the patient name and patient ID are compared to the matching patterns in this list. The name and ID are
|
|
97
|
-
compared in lower-case and make use of wildcards. If any of the patterns match the patient name or ID, then the
|
|
98
|
-
following things happen:
|
|
99
|
-
</p>
|
|
100
|
-
<ul>
|
|
101
|
-
<li>that pattern is placed in the <strong>not_patient_indicator</strong> database field</li>
|
|
102
|
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<li>the study is excluded from the filtered study list if <strong>Include possible test data</strong> is set to
|
|
103
|
-
<strong>No</strong></li>
|
|
104
|
-
<li>the pattern is printed on the <strong>Test patient indicators?</strong> line of the study detail page</li>
|
|
105
|
-
<li>the pattern is included in the study export XLSX or CSV files in the <strong>Test patient?</strong> column</li>
|
|
106
|
-
</ul>
|
|
107
|
-
</div>
|
|
108
|
-
</div>
|
|
109
|
-
<div class="row">
|
|
110
|
-
<div class="col-md-5 col-md-offset-1">
|
|
111
|
-
<h4>For example:</h4>
|
|
112
|
-
<table class="table table-bordered">
|
|
113
|
-
<tr>
|
|
114
|
-
<th>ID matching pattern</th>
|
|
115
|
-
<td><code>*ph*</code></td>
|
|
116
|
-
</tr>
|
|
117
|
-
<tr>
|
|
118
|
-
<th>Name matching pattern</th>
|
|
119
|
-
<td><code>*QA*</code></td>
|
|
120
|
-
</tr>
|
|
121
|
-
<tr>
|
|
122
|
-
<th>Study patient ID</th>
|
|
123
|
-
<td>PPH23148236</td>
|
|
124
|
-
</tr>
|
|
125
|
-
<tr>
|
|
126
|
-
<th>Study patient name</th>
|
|
127
|
-
<td>Srour^Saraqa</td>
|
|
128
|
-
</tr>
|
|
129
|
-
<tr>
|
|
130
|
-
<th>Resultant not-patient indicator recorded:</th>
|
|
131
|
-
<td>IDs: *ph* | Names: *qa*</td>
|
|
132
|
-
</tr>
|
|
133
|
-
</table>
|
|
134
|
-
</div>
|
|
135
|
-
<div class="col-md-5">
|
|
136
|
-
<h4>How to use the wildcards:</h4>
|
|
137
|
-
<table class="table table-bordered">
|
|
138
|
-
<tr><th>Pattern</th><th>Meaning</th></tr>
|
|
139
|
-
<tr><td><code>*</code></td><td>matches everything</td></tr>
|
|
140
|
-
<tr><td><code>?</code></td><td>matches any single character</td></tr>
|
|
141
|
-
<tr><td><code>[seq]</code></td><td>matches any character in seq</td></tr>
|
|
142
|
-
<tr><td><code>[!seq]</code></td><td>matches any character not in seq</td></tr>
|
|
143
|
-
</table>
|
|
144
|
-
</div>
|
|
145
|
-
</div>
|
|
146
|
-
<div class="row">
|
|
147
|
-
<div class="col-md-10 col-md-offset-1">
|
|
148
|
-
<div class="panel panel-warning">
|
|
149
|
-
<div class="panel-heading"><h3 class="panel-title">Warning!</h3></div>
|
|
150
|
-
<div class="panel-body">
|
|
151
|
-
<ul>
|
|
152
|
-
<li>The pattern you use to indicate test studies <strong>might match real patient names/IDs</strong></li>
|
|
153
|
-
<li>
|
|
154
|
-
Any strings in the list below will be displayed in the interface and exports, so don't include real names in
|
|
155
|
-
this list!
|
|
156
|
-
</li>
|
|
157
|
-
<li>
|
|
158
|
-
Names and IDs are matched on import - <strong>changes made here will not affect any of the studies already
|
|
159
|
-
in the database</strong>.
|
|
160
|
-
</li>
|
|
161
|
-
</ul>
|
|
162
|
-
</div>
|
|
163
|
-
</div>
|
|
164
|
-
</div>
|
|
165
|
-
</div>
|
|
166
|
-
|
|
167
|
-
|
|
168
|
-
<div class="row">
|
|
169
|
-
<div class="col-md-10 col-md-offset-1">
|
|
170
|
-
<div class="panel panel-default">
|
|
171
|
-
<div class="panel-heading">
|
|
172
|
-
<h3 class="panel-title">Replicating behaviour of release 0.7.4 and earlier</h3>
|
|
173
|
-
</div>
|
|
174
|
-
<div class="panel-body">
|
|
175
|
-
{% if not admin.admingroup %}
|
|
176
|
-
<p><i>This is only applicable to users in the 'admingroup'</i></p>
|
|
177
|
-
{% endif %}
|
|
178
|
-
{% if admin.admingroup %}
|
|
179
|
-
<p>
|
|
180
|
-
OpenREM releases before 0.8 had the not-patient identification patterns hard-coded. From release 0.8.0 the
|
|
181
|
-
patterns are (admin) user configurable, but will start with no patterns in place. To add the patterns that would
|
|
182
|
-
maintain the behaviour of previous releases, <a href="{% url 'not_patient_indicators_as_074' %}">click here</a>.
|
|
183
|
-
</p>
|
|
184
|
-
{% endif %}
|
|
185
|
-
</div>
|
|
186
|
-
</div>
|
|
187
|
-
</div>
|
|
188
|
-
</div>
|
|
189
|
-
|
|
190
|
-
|
|
1
|
+
{% extends "remapp/base.html" %}
|
|
2
|
+
|
|
3
|
+
{% block confnav %}<li class="dropdown active">{% endblock %}
|
|
4
|
+
|
|
5
|
+
{% block navhelp %}
|
|
6
|
+
<li>
|
|
7
|
+
<a
|
|
8
|
+
href="https://docs.openrem.org/en/{{ admin.docsversion }}/i_not_patient_indicator.html"
|
|
9
|
+
target="_blank" rel="noopener noreferrer"
|
|
10
|
+
data-toggle="tooltip" title="Not-patient indicators documentation - opens in a new tab">
|
|
11
|
+
Not-patient indicator documentation
|
|
12
|
+
</a>
|
|
13
|
+
</li>
|
|
14
|
+
{% endblock %}
|
|
15
|
+
|
|
16
|
+
{% block mainblock %}
|
|
17
|
+
|
|
18
|
+
<div class="row">
|
|
19
|
+
<div class="col-md-10 col-md-offset-1">
|
|
20
|
+
<h1>Not-patient indicators</h1>
|
|
21
|
+
<p>Find QA and test studies in your anonymised data by matching against strings with wildcards when the study is
|
|
22
|
+
imported into OpenREM</p>
|
|
23
|
+
{% if not admin.admingroup %}
|
|
24
|
+
<p>
|
|
25
|
+
Log in as an administrator to be able to modify the patterns.
|
|
26
|
+
</p>
|
|
27
|
+
{% endif %}
|
|
28
|
+
</div>
|
|
29
|
+
</div>
|
|
30
|
+
<div class="row">
|
|
31
|
+
<div class="col-md-5 col-md-offset-1">
|
|
32
|
+
<div class="panel panel-primary">
|
|
33
|
+
<div class="panel-heading">
|
|
34
|
+
{% if admin.admingroup %}
|
|
35
|
+
<a class="btn btn-default pull-right btn-sm" href="{% url 'notpatienid_add' %}" role="button">
|
|
36
|
+
Add ID patterns
|
|
37
|
+
</a>
|
|
38
|
+
{% endif %}
|
|
39
|
+
<h3 class="panel-title">ID matching patterns</h3>
|
|
40
|
+
<div class="clearfix"></div>
|
|
41
|
+
</div>
|
|
42
|
+
<div class="panel-body">
|
|
43
|
+
{% if ids.count < 1 %}
|
|
44
|
+
<p>Nothing set yet, see below for examples, or to set the patterns to match the 0.7.4 release</p>
|
|
45
|
+
{% endif %}
|
|
46
|
+
<table class="table table-bordered">
|
|
47
|
+
{% for id in ids %}
|
|
48
|
+
<tr>
|
|
49
|
+
<td> <code>{{ id.not_patient_id }}</code>
|
|
50
|
+
{% if admin.admingroup %}
|
|
51
|
+
<a href="{% url 'notpatientid_delete' pk=id.id %}" role="button" class="pull-right"> Delete</a>
|
|
52
|
+
<a href="{% url 'notpatientid_update' pk=id.id %}" role="button" class="pull-right">Modify </a>
|
|
53
|
+
{% endif %}
|
|
54
|
+
</td>
|
|
55
|
+
</tr>
|
|
56
|
+
{% endfor %}
|
|
57
|
+
</table>
|
|
58
|
+
</div>
|
|
59
|
+
</div>
|
|
60
|
+
</div>
|
|
61
|
+
<div class="col-md-5">
|
|
62
|
+
<div class="panel panel-primary">
|
|
63
|
+
<div class="panel-heading">
|
|
64
|
+
{% if admin.admingroup %}
|
|
65
|
+
<a class="btn btn-default pull-right btn-sm" href="{% url 'notpatientname_add' %}" role="button">
|
|
66
|
+
Add name patterns
|
|
67
|
+
</a>
|
|
68
|
+
{% endif %}
|
|
69
|
+
<h3 class="panel-title">Name matching patterns</h3>
|
|
70
|
+
<div class="clearfix"></div>
|
|
71
|
+
</div>
|
|
72
|
+
<div class="panel-body">
|
|
73
|
+
{% if names.count < 1 %}
|
|
74
|
+
<p>Nothing set yet, see below for examples, or to set the patterns to match the 0.7.4 release</p>
|
|
75
|
+
{% endif %}
|
|
76
|
+
<table class="table table-bordered">
|
|
77
|
+
{% for name in names %}
|
|
78
|
+
<tr>
|
|
79
|
+
<td>
|
|
80
|
+
<code>{{ name.not_patient_name }}</code>
|
|
81
|
+
{% if admin.admingroup %}
|
|
82
|
+
<a href="{% url 'notpatientname_delete' pk=name.id %}" role="button" class="pull-right"> Delete</a>
|
|
83
|
+
<a href="{% url 'notpatientname_update' pk=name.id %}" role="button" class="pull-right">Modify </a>
|
|
84
|
+
{% endif %}
|
|
85
|
+
</td>
|
|
86
|
+
</tr>
|
|
87
|
+
{% endfor %}
|
|
88
|
+
</table>
|
|
89
|
+
</div>
|
|
90
|
+
</div>
|
|
91
|
+
</div>
|
|
92
|
+
</div>
|
|
93
|
+
<div class="row">
|
|
94
|
+
<div class="col-md-8 col-md-offset-2">
|
|
95
|
+
<p>
|
|
96
|
+
On import, the patient name and patient ID are compared to the matching patterns in this list. The name and ID are
|
|
97
|
+
compared in lower-case and make use of wildcards. If any of the patterns match the patient name or ID, then the
|
|
98
|
+
following things happen:
|
|
99
|
+
</p>
|
|
100
|
+
<ul>
|
|
101
|
+
<li>that pattern is placed in the <strong>not_patient_indicator</strong> database field</li>
|
|
102
|
+
<li>the study is excluded from the filtered study list if <strong>Include possible test data</strong> is set to
|
|
103
|
+
<strong>No</strong></li>
|
|
104
|
+
<li>the pattern is printed on the <strong>Test patient indicators?</strong> line of the study detail page</li>
|
|
105
|
+
<li>the pattern is included in the study export XLSX or CSV files in the <strong>Test patient?</strong> column</li>
|
|
106
|
+
</ul>
|
|
107
|
+
</div>
|
|
108
|
+
</div>
|
|
109
|
+
<div class="row">
|
|
110
|
+
<div class="col-md-5 col-md-offset-1">
|
|
111
|
+
<h4>For example:</h4>
|
|
112
|
+
<table class="table table-bordered">
|
|
113
|
+
<tr>
|
|
114
|
+
<th>ID matching pattern</th>
|
|
115
|
+
<td><code>*ph*</code></td>
|
|
116
|
+
</tr>
|
|
117
|
+
<tr>
|
|
118
|
+
<th>Name matching pattern</th>
|
|
119
|
+
<td><code>*QA*</code></td>
|
|
120
|
+
</tr>
|
|
121
|
+
<tr>
|
|
122
|
+
<th>Study patient ID</th>
|
|
123
|
+
<td>PPH23148236</td>
|
|
124
|
+
</tr>
|
|
125
|
+
<tr>
|
|
126
|
+
<th>Study patient name</th>
|
|
127
|
+
<td>Srour^Saraqa</td>
|
|
128
|
+
</tr>
|
|
129
|
+
<tr>
|
|
130
|
+
<th>Resultant not-patient indicator recorded:</th>
|
|
131
|
+
<td>IDs: *ph* | Names: *qa*</td>
|
|
132
|
+
</tr>
|
|
133
|
+
</table>
|
|
134
|
+
</div>
|
|
135
|
+
<div class="col-md-5">
|
|
136
|
+
<h4>How to use the wildcards:</h4>
|
|
137
|
+
<table class="table table-bordered">
|
|
138
|
+
<tr><th>Pattern</th><th>Meaning</th></tr>
|
|
139
|
+
<tr><td><code>*</code></td><td>matches everything</td></tr>
|
|
140
|
+
<tr><td><code>?</code></td><td>matches any single character</td></tr>
|
|
141
|
+
<tr><td><code>[seq]</code></td><td>matches any character in seq</td></tr>
|
|
142
|
+
<tr><td><code>[!seq]</code></td><td>matches any character not in seq</td></tr>
|
|
143
|
+
</table>
|
|
144
|
+
</div>
|
|
145
|
+
</div>
|
|
146
|
+
<div class="row">
|
|
147
|
+
<div class="col-md-10 col-md-offset-1">
|
|
148
|
+
<div class="panel panel-warning">
|
|
149
|
+
<div class="panel-heading"><h3 class="panel-title">Warning!</h3></div>
|
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<div class="panel-body">
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<ul>
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<li>The pattern you use to indicate test studies <strong>might match real patient names/IDs</strong></li>
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<li>
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Any strings in the list below will be displayed in the interface and exports, so don't include real names in
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this list!
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</li>
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<li>
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Names and IDs are matched on import - <strong>changes made here will not affect any of the studies already
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in the database</strong>.
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</li>
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<h3 class="panel-title">Replicating behaviour of release 0.7.4 and earlier</h3>
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{% if not admin.admingroup %}
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<p><i>This is only applicable to users in the 'admingroup'</i></p>
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{% endif %}
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{% if admin.admingroup %}
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<p>
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OpenREM releases before 0.8 had the not-patient identification patterns hard-coded. From release 0.8.0 the
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patterns are (admin) user configurable, but will start with no patterns in place. To add the patterns that would
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maintain the behaviour of previous releases, <a href="{% url 'not_patient_indicators_as_074' %}">click here</a>.
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</p>
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{% endif %}
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</div>
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{% endblock %}
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@@ -1,81 +1,81 @@
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{% extends "remapp/base.html" %}
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{% block navhelp %}
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<li>
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<a
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href="https://docs.openrem.org/en/{{ admin.docsversion }}/i_not_patient_indicator.html"
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target="_blank" rel="noopener noreferrer"
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data-toggle="tooltip" title="Not-patient indicators documentation - opens in a new tab">
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Not-patient indicator documentation
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</a>
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</li>
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{% endblock %}
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{% block confnav %}<li class="dropdown active">{% endblock %}
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{% block mainblock %}
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{% block modify_pattern %}
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{% endblock %}
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<div class="row">
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<div class="col-md-offset-3 col-md-6">
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<h4>Guidelines</h4>
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<p>
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The patient name and the ID are matched against the patterns you configure. The patterns make use of wildcards as
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per the following table, and are case insensitive:
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<div class="col-md-offset-4 col-md-4">
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<table class="table table-bordered">
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<tr><th>Pattern</th><th>Meaning</th></tr>
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<tr><td><code>*</code></td><td>matches everything</td></tr>
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<tr><td><code>?</code></td><td>matches any single character</td></tr>
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<tr><td><code>[seq]</code></td><td>matches any character in seq</td></tr>
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<tr><td><code>[!seq]</code></td><td>matches any character not in seq</td></tr>
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</table>
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</div>
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</div>
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<div class="col-md-offset-3 col-md-6">
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<p>
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To match all studies where the patient name begins with <code>physics</code>, the pattern should be set to
|
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|
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<code>physics*</code>. This would match <code>Physics^RoutIQ</code> but not match <code>Testing^Physics</code>
|
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|
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because there was no wildcard at the start of the pattern. The patient name in DICOM is normally formatted
|
|
47
|
-
<code>Family name^Given name^Middle name^Prefix^Suffix</code>. Therefore to match any studies where the first name
|
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|
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is <code>Test</code>, you would set the pattern to be <code>*^test*</code> (although this would also match a
|
|
49
|
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middle name, prefix or suffix equal to <code>test</code> if they were present!
|
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|
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</p>
|
|
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|
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<p>
|
|
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|
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If your test patient name always starts with <code>PHY</code> and then a number, you might use this pattern:
|
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|
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<code>phy[0-9]*</code>. Here we have used a range for the sequence to match any number, but it will only match one
|
|
54
|
-
character per sequence, so a <code>*</code> is required to match all the characters after the first number. This
|
|
55
|
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pattern will match <code>Phy12345</code> and <code>PHY6test</code> but not <code>Phyliss</code>.
|
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|
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</p>
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|
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</div>
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</div>
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<div class="row">
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|
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<div class="col-md-offset-3 col-md-6">
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<h4>Replicating behaviour of release 0.7.4 and earlier</h4>
|
|
62
|
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<p>
|
|
63
|
-
OpenREM releases before 0.8 had the not-patient identification patterns hard-coded. From release 0.8.0 the
|
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64
|
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patterns are (admin) user configurable, but will start with no patterns in place.
|
|
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|
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</p>
|
|
66
|
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{% if admin.admingroup %}
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|
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<p>
|
|
68
|
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To add the patterns that would maintain the behaviour of previous releases,
|
|
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|
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<a href="{% url 'not_patient_indicators_as_074' %}>click here</a>.
|
|
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|
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</p>
|
|
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|
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{% endif %}
|
|
72
|
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{% if not admin.admingroup %}
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|
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<p>
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|
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Log in as an admin in order to add the patterns that would maintain the behaviour of previous releases.
|
|
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|
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</p>
|
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|
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{% endif %}
|
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|
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</div>
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|
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</div>
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|
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|
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|
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|
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{% endblock %}
|
|
1
|
+
{% extends "remapp/base.html" %}
|
|
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|
+
|
|
3
|
+
{% block navhelp %}
|
|
4
|
+
<li>
|
|
5
|
+
<a
|
|
6
|
+
href="https://docs.openrem.org/en/{{ admin.docsversion }}/i_not_patient_indicator.html"
|
|
7
|
+
target="_blank" rel="noopener noreferrer"
|
|
8
|
+
data-toggle="tooltip" title="Not-patient indicators documentation - opens in a new tab">
|
|
9
|
+
Not-patient indicator documentation
|
|
10
|
+
</a>
|
|
11
|
+
</li>
|
|
12
|
+
{% endblock %}
|
|
13
|
+
|
|
14
|
+
{% block confnav %}<li class="dropdown active">{% endblock %}
|
|
15
|
+
|
|
16
|
+
{% block mainblock %}
|
|
17
|
+
|
|
18
|
+
{% block modify_pattern %}
|
|
19
|
+
{% endblock %}
|
|
20
|
+
|
|
21
|
+
<div class="row">
|
|
22
|
+
<div class="col-md-offset-3 col-md-6">
|
|
23
|
+
<h4>Guidelines</h4>
|
|
24
|
+
<p>
|
|
25
|
+
The patient name and the ID are matched against the patterns you configure. The patterns make use of wildcards as
|
|
26
|
+
per the following table, and are case insensitive:
|
|
27
|
+
</p>
|
|
28
|
+
</div>
|
|
29
|
+
</div>
|
|
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|
+
<div class="row">
|
|
31
|
+
<div class="col-md-offset-4 col-md-4">
|
|
32
|
+
<table class="table table-bordered">
|
|
33
|
+
<tr><th>Pattern</th><th>Meaning</th></tr>
|
|
34
|
+
<tr><td><code>*</code></td><td>matches everything</td></tr>
|
|
35
|
+
<tr><td><code>?</code></td><td>matches any single character</td></tr>
|
|
36
|
+
<tr><td><code>[seq]</code></td><td>matches any character in seq</td></tr>
|
|
37
|
+
<tr><td><code>[!seq]</code></td><td>matches any character not in seq</td></tr>
|
|
38
|
+
</table>
|
|
39
|
+
</div>
|
|
40
|
+
</div>
|
|
41
|
+
<div class="row">
|
|
42
|
+
<div class="col-md-offset-3 col-md-6">
|
|
43
|
+
<p>
|
|
44
|
+
To match all studies where the patient name begins with <code>physics</code>, the pattern should be set to
|
|
45
|
+
<code>physics*</code>. This would match <code>Physics^RoutIQ</code> but not match <code>Testing^Physics</code>
|
|
46
|
+
because there was no wildcard at the start of the pattern. The patient name in DICOM is normally formatted
|
|
47
|
+
<code>Family name^Given name^Middle name^Prefix^Suffix</code>. Therefore to match any studies where the first name
|
|
48
|
+
is <code>Test</code>, you would set the pattern to be <code>*^test*</code> (although this would also match a
|
|
49
|
+
middle name, prefix or suffix equal to <code>test</code> if they were present!
|
|
50
|
+
</p>
|
|
51
|
+
<p>
|
|
52
|
+
If your test patient name always starts with <code>PHY</code> and then a number, you might use this pattern:
|
|
53
|
+
<code>phy[0-9]*</code>. Here we have used a range for the sequence to match any number, but it will only match one
|
|
54
|
+
character per sequence, so a <code>*</code> is required to match all the characters after the first number. This
|
|
55
|
+
pattern will match <code>Phy12345</code> and <code>PHY6test</code> but not <code>Phyliss</code>.
|
|
56
|
+
</p>
|
|
57
|
+
</div>
|
|
58
|
+
</div>
|
|
59
|
+
<div class="row">
|
|
60
|
+
<div class="col-md-offset-3 col-md-6">
|
|
61
|
+
<h4>Replicating behaviour of release 0.7.4 and earlier</h4>
|
|
62
|
+
<p>
|
|
63
|
+
OpenREM releases before 0.8 had the not-patient identification patterns hard-coded. From release 0.8.0 the
|
|
64
|
+
patterns are (admin) user configurable, but will start with no patterns in place.
|
|
65
|
+
</p>
|
|
66
|
+
{% if admin.admingroup %}
|
|
67
|
+
<p>
|
|
68
|
+
To add the patterns that would maintain the behaviour of previous releases,
|
|
69
|
+
<a href="{% url 'not_patient_indicators_as_074' %}>click here</a>.
|
|
70
|
+
</p>
|
|
71
|
+
{% endif %}
|
|
72
|
+
{% if not admin.admingroup %}
|
|
73
|
+
<p>
|
|
74
|
+
Log in as an admin in order to add the patterns that would maintain the behaviour of previous releases.
|
|
75
|
+
</p>
|
|
76
|
+
{% endif %}
|
|
77
|
+
</div>
|
|
78
|
+
</div>
|
|
79
|
+
|
|
80
|
+
|
|
81
|
+
{% endblock %}
|