symbiote-cli 0.1.0

package/dist/src/commands/dna.js

@@ -0,0 +1,128 @@
+import path from 'node:path';
+import * as p from '@clack/prompts';
+import pc from 'picocolors';
+import { ensureSymbioteHome } from '#utils/config.js';
+import { DnaStorage } from '#dna/storage.js';
+import { DnaEngine } from '#dna/engine.js';
+export async function cmdDna(subcommand, args, flags) {
+    const symbioteHome = ensureSymbioteHome();
+    const dnaDir = path.join(symbioteHome, 'dna');
+    const storage = new DnaStorage(dnaDir);
+    storage.ensureDirectories();
+    if (!subcommand || subcommand === 'dna') {
+        const all = storage.listEntries();
+        const approved = all.filter((e) => e.frontmatter.status === 'approved');
+        const suggested = all.filter((e) => e.frontmatter.status === 'suggested');
+        const rejected = all.filter((e) => e.frontmatter.status === 'rejected');
+        p.intro(pc.bold('Developer DNA'));
+        p.log.info(`${pc.dim('Total:')}     ${all.length}\n` +
+            `${pc.dim('Approved:')}  ${approved.length}\n` +
+            `${pc.dim('Suggested:')} ${suggested.length}\n` +
+            `${pc.dim('Rejected:')}  ${rejected.length}`);
+        if (suggested.length > 0) {
+            p.log.warn('Pending review:');
+            for (const entry of suggested) {
+                console.log(`  ${pc.yellow('[?]')} ${entry.frontmatter.id} ${pc.dim(`(confidence: ${entry.frontmatter.confidence})`)}`);
+            }
+            console.log();
+            console.log(pc.dim("  Run 'symbiote dna approve <id>' or 'symbiote dna reject <id>' to review."));
+        }
+        p.outro('');
+        return;
+    }
+    if (subcommand === 'list') {
+        const entries = storage.listEntries({
+            status: (typeof flags.status === 'string' ? flags.status : undefined),
+            category: (typeof flags.category === 'string' ? flags.category : undefined),
+        });
+        if (entries.length === 0) {
+            p.log.info('No DNA entries found.');
+            return;
+        }
+        console.log(`\n${pc.bold('Developer DNA')} ${pc.dim(`— ${entries.length} entries`)}\n`);
+        console.log(pc.dim('\u2500'.repeat(70)));
+        for (const entry of entries) {
+            const fm = entry.frontmatter;
+            const statusIcon = fm.status === 'approved'
+                ? pc.green('[+]')
+                : fm.status === 'rejected'
+                    ? pc.red('[-]')
+                    : pc.yellow('[?]');
+            console.log(`${statusIcon} ${pc.bold(fm.id)}  ${pc.dim(`(${fm.category}, confidence: ${fm.confidence}, occurrences: ${fm.occurrences})`)}`);
+            console.log(`    ${entry.content.slice(0, 100)}${entry.content.length > 100 ? '...' : ''}`);
+            console.log(pc.dim('\u2500'.repeat(70)));
+        }
+        return;
+    }
+    if (subcommand === 'show') {
+        const id = args[0];
+        if (!id) {
+            p.log.error('Usage: symbiote dna show <id>');
+            process.exit(1);
+        }
+        const entry = storage.readEntry(id);
+        if (!entry) {
+            p.log.error(`Entry not found: ${id}`);
+            process.exit(1);
+        }
+        const fm = entry.frontmatter;
+        console.log();
+        console.log(`${pc.dim('ID:')}          ${pc.bold(fm.id)}`);
+        console.log(`${pc.dim('Category:')}    ${fm.category}`);
+        console.log(`${pc.dim('Status:')}      ${fm.status}`);
+        console.log(`${pc.dim('Confidence:')}  ${fm.confidence}`);
+        console.log(`${pc.dim('Source:')}      ${fm.source}`);
+        console.log(`${pc.dim('First seen:')}  ${fm.firstSeen}`);
+        console.log(`${pc.dim('Last seen:')}   ${fm.lastSeen}`);
+        console.log(`${pc.dim('Occurrences:')} ${fm.occurrences}`);
+        console.log(`${pc.dim('Sessions:')}    ${fm.sessionIds.length}`);
+        console.log(`\n${entry.content}\n`);
+        return;
+    }
+    if (subcommand === 'approve') {
+        const id = args[0];
+        if (!id) {
+            p.log.error('Usage: symbiote dna approve <id>');
+            process.exit(1);
+        }
+        const engine = new DnaEngine(storage);
+        const entry = engine.approveEntry(id);
+        if (entry) {
+            p.log.success(`Approved: ${entry.frontmatter.id}`);
+        }
+        else {
+            p.log.error(`Entry not found: ${id}`);
+        }
+        return;
+    }
+    if (subcommand === 'reject') {
+        const id = args[0];
+        if (!id) {
+            p.log.error('Usage: symbiote dna reject <id>');
+            process.exit(1);
+        }
+        const engine = new DnaEngine(storage);
+        const entry = engine.rejectEntry(id);
+        if (entry) {
+            p.log.success(`Rejected: ${entry.frontmatter.id}`);
+        }
+        else {
+            p.log.error(`Entry not found: ${id}`);
+        }
+        return;
+    }
+    if (subcommand === 'delete') {
+        const id = args[0];
+        if (!id) {
+            p.log.error('Usage: symbiote dna delete <id>');
+            process.exit(1);
+        }
+        storage.deleteEntry(id);
+        p.log.success(`Deleted: ${id}`);
+        return;
+    }
+    p.log.error(`Unknown DNA subcommand: ${subcommand}`);
+    console.log(pc.dim('  Available: list, show, approve, reject, delete'));
+    process.exit(1);
+}
+//# sourceMappingURL=dna.js.map

package/dist/src/commands/dna.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/hooks.d.ts

@@ -0,0 +1,6 @@
+export declare function cmdHookPre(): Promise<void>;
+export declare function cmdHookPost(): Promise<void>;
+export declare function cmdHooksInstall(): Promise<void>;
+export declare function cmdHookSessionStart(): Promise<void>;
+export declare function cmdHooksUninstall(): Promise<void>;
+//# sourceMappingURL=hooks.d.ts.map

package/dist/src/commands/hooks.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/commands/hooks.js

@@ -0,0 +1,210 @@
+import path from 'node:path';
+import * as p from '@clack/prompts';
+import pc from 'picocolors';
+import { getProjectPort, SYMBIOTE_HOME } from '#utils/config.js';
+export async function cmdHookPre() {
+    process.stderr.write('[symbiote] command hooks are deprecated, run symbiote install to upgrade to HTTP hooks\n');
+    const { readStdinPayload, writeResponse, fireHookEvent } = await import('#hooks/types.js');
+    const http = await import('node:http');
+    const projectRoot = process.cwd();
+    const port = getProjectPort(projectRoot);
+    const payload = await readStdinPayload();
+    if (payload.type !== 'pre_tool_use') {
+        writeResponse({ decision: 'allow' });
+        return;
+    }
+    const filePath = payload.tool_input.file_path;
+    const FILE_TOOLS = new Set(['Read', 'Edit', 'Write']);
+    if (filePath && FILE_TOOLS.has(payload.tool_name)) {
+        try {
+            const params = new URLSearchParams({
+                file: filePath,
+                tool: payload.tool_name,
+                root: projectRoot,
+            });
+            const url = `http://127.0.0.1:${port}/internal/hook-context?${params}`;
+            const response = await new Promise((resolve) => {
+                const req = http.get(url, { timeout: 3000 }, (res) => {
+                    let data = '';
+                    res.on('data', (chunk) => {
+                        data += chunk;
+                    });
+                    res.on('end', () => {
+                        try {
+                            resolve(JSON.parse(data));
+                        }
+                        catch {
+                            resolve({ decision: 'allow' });
+                        }
+                    });
+                });
+                req.on('error', () => resolve({ decision: 'allow' }));
+                req.on('timeout', () => {
+                    req.destroy();
+                    resolve({ decision: 'allow' });
+                });
+            });
+            writeResponse({
+                decision: response.decision,
+                additionalContext: response.additionalContext,
+            });
+        }
+        catch {
+            writeResponse({ decision: 'allow' });
+        }
+    }
+    else {
+        writeResponse({ decision: 'allow' });
+    }
+    if (filePath && payload.tool_name === 'Read') {
+        const relativePath = path.relative(projectRoot, filePath);
+        await fireHookEvent('file:read', { filePath: relativePath, toolName: payload.tool_name }, port);
+    }
+}
+export async function cmdHookPost() {
+    process.stderr.write('[symbiote] command hooks are deprecated, run symbiote install to upgrade to HTTP hooks\n');
+    const { readStdinPayload, writeResponse, fireHookEvent } = await import('#hooks/types.js');
+    const projectRoot = process.cwd();
+    const port = getProjectPort(projectRoot);
+    const payload = await readStdinPayload();
+    if (payload.type !== 'post_tool_use') {
+        writeResponse({ decision: 'allow' });
+        return;
+    }
+    writeResponse({ decision: 'allow' });
+    if (payload.tool_name === 'Edit' || payload.tool_name === 'Write') {
+        const filePath = payload.tool_input.file_path;
+        if (filePath) {
+            const relativePath = path.relative(projectRoot, filePath);
+            const isCreate = payload.tool_name === 'Write';
+            await fireHookEvent(isCreate ? 'file:create' : 'file:edit', { filePath: relativePath, toolName: payload.tool_name }, port);
+        }
+    }
+}
+export async function cmdHooksInstall() {
+    const { execSync } = await import('node:child_process');
+    p.intro(pc.bold('Symbiote') + pc.dim(' — Installing Claude Code hooks'));
+    try {
+        execSync('claude hooks add pre_tool_use symbiote -- npx symbiote-cli hook pre', {
+            stdio: 'inherit',
+        });
+        p.log.success('Registered pre_tool_use hook');
+    }
+    catch {
+        p.log.error('Failed to register pre_tool_use hook');
+    }
+    try {
+        execSync('claude hooks add post_tool_use symbiote -- npx symbiote-cli hook post', {
+            stdio: 'inherit',
+        });
+        p.log.success('Registered post_tool_use hook');
+    }
+    catch {
+        p.log.error('Failed to register post_tool_use hook');
+    }
+    p.outro('Hooks installed. Symbiote will inject context on every tool call.');
+}
+export async function cmdHookSessionStart() {
+    const http = await import('node:http');
+    const projectRoot = process.cwd();
+    const port = getProjectPort(projectRoot);
+    let source = 'startup';
+    let sessionId = '';
+    try {
+        const raw = await new Promise((resolve, reject) => {
+            let data = '';
+            process.stdin.setEncoding('utf-8');
+            process.stdin.on('data', (chunk) => {
+                data += chunk;
+            });
+            process.stdin.on('end', () => resolve(data));
+            process.stdin.on('error', reject);
+        });
+        if (raw.trim()) {
+            const payload = JSON.parse(raw);
+            if (typeof payload.source === 'string')
+                source = payload.source;
+            if (typeof payload.session_id === 'string')
+                sessionId = payload.session_id;
+        }
+    }
+    catch {
+        // Proceed with defaults
+    }
+    const serverRunning = await new Promise((resolve) => {
+        const req = http.get(`http://127.0.0.1:${port}/health`, { timeout: 2000 }, (res) => {
+            res.resume();
+            resolve(res.statusCode === 200);
+        });
+        req.on('error', () => resolve(false));
+        req.on('timeout', () => {
+            req.destroy();
+            resolve(false);
+        });
+    });
+    if (serverRunning) {
+        const params = new URLSearchParams({ source, sessionId });
+        const url = `http://127.0.0.1:${port}/internal/hooks/session-start?${params}`;
+        const response = await new Promise((resolve) => {
+            const req = http.get(url, { timeout: 3000 }, (res) => {
+                let data = '';
+                res.on('data', (chunk) => {
+                    data += chunk;
+                });
+                res.on('end', () => resolve(data));
+            });
+            req.on('error', () => resolve('{}'));
+            req.on('timeout', () => {
+                req.destroy();
+                resolve('{}');
+            });
+        });
+        process.stdout.write(response + '\n');
+        return;
+    }
+    try {
+        const { DnaStorage } = await import('#dna/storage.js');
+        const dnaDir = path.join(SYMBIOTE_HOME, 'dna');
+        const dnaStorage = new DnaStorage(dnaDir);
+        const entries = dnaStorage
+            .listEntries()
+            .filter((e) => e.frontmatter.status !== 'rejected')
+            .slice(0, 5);
+        const dnaRules = entries.map((e) => e.content).join(', ');
+        const projectName = path.basename(projectRoot);
+        const lines = [`[Symbiote] Project: ${projectName}`];
+        if (dnaRules) {
+            lines.push(`DNA: ${dnaRules}`);
+        }
+        const output = JSON.stringify({
+            hookSpecificOutput: {
+                hookEventName: 'SessionStart',
+                additionalContext: lines.join('\n'),
+            },
+        });
+        process.stdout.write(output + '\n');
+    }
+    catch {
+        process.stdout.write('{}\n');
+    }
+}
+export async function cmdHooksUninstall() {
+    const { execSync } = await import('node:child_process');
+    p.intro(pc.bold('Symbiote') + pc.dim(' — Uninstalling Claude Code hooks'));
+    try {
+        execSync('claude hooks remove pre_tool_use symbiote', { stdio: 'inherit' });
+        p.log.success('Removed pre_tool_use hook');
+    }
+    catch {
+        p.log.error('Failed to remove pre_tool_use hook');
+    }
+    try {
+        execSync('claude hooks remove post_tool_use symbiote', { stdio: 'inherit' });
+        p.log.success('Removed post_tool_use hook');
+    }
+    catch {
+        p.log.error('Failed to remove post_tool_use hook');
+    }
+    p.outro('Hooks uninstalled.');
+}
+//# sourceMappingURL=hooks.js.map

package/dist/src/commands/hooks.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/impact.d.ts

@@ -0,0 +1,2 @@
+export declare function cmdImpact(): Promise<void>;
+//# sourceMappingURL=impact.d.ts.map

package/dist/src/commands/impact.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"impact.d.ts","sourceRoot":"","sources":["../../../src/commands/impact.ts"],"names":[],"mappings":"AAKA,wBAAsB,SAAS,IAAI,OAAO,CAAC,IAAI,CAAC,CA2D/C"}

package/dist/src/commands/impact.js

@@ -0,0 +1,50 @@
+import * as p from '@clack/prompts';
+import pc from 'picocolors';
+import { getBrainDbPath } from '#utils/config.js';
+import { createDatabaseWithRetry } from './shared.js';
+export async function cmdImpact() {
+    const projectRoot = process.cwd();
+    const dbPath = getBrainDbPath(projectRoot);
+    const db = await createDatabaseWithRetry(dbPath);
+    p.intro(pc.bold('Symbiote') + pc.dim(' — Impact Analysis'));
+    const s = p.spinner();
+    s.start('Loading graph...');
+    const { buildGraphFromDb } = await import('#core/graph-builder.js');
+    const graph = await buildGraphFromDb(db);
+    s.stop('Graph loaded');
+    const s2 = p.spinner();
+    s2.start('Analyzing working changes...');
+    const { GitImpactAnalyzer } = await import('#core/git-impact.js');
+    const gitImpact = new GitImpactAnalyzer(graph);
+    let result;
+    try {
+        result = await gitImpact.analyzeWorkingChanges(projectRoot);
+    }
+    catch {
+        s2.stop('No git changes detected');
+        await db.close();
+        p.outro('Working tree is clean.');
+        return;
+    }
+    s2.stop('Analysis complete');
+    await db.close();
+    if (result.changedFiles.length === 0) {
+        p.outro('Working tree is clean.');
+        return;
+    }
+    p.log.info(`${pc.dim('Changed files:')}  ${result.changedFiles.length}\n` +
+        `${pc.dim('Affected nodes:')} ${result.affectedNodes.length}\n` +
+        `${pc.dim('Affected files:')} ${result.affectedFiles.length}\n` +
+        `${pc.dim('Risk level:')}     ${result.riskLevel === 'HIGH' ? pc.red(result.riskLevel) : result.riskLevel === 'MEDIUM' ? pc.yellow(result.riskLevel) : pc.green(result.riskLevel)}`);
+    if (result.affectedFiles.length > 0) {
+        console.log();
+        console.log(pc.bold('  Affected files:'));
+        for (const file of result.affectedFiles.sort((a, b) => b.maxConfidence - a.maxConfidence)) {
+            const conf = (file.maxConfidence * 100).toFixed(0);
+            const color = file.maxConfidence > 0.7 ? pc.red : file.maxConfidence > 0.4 ? pc.yellow : pc.dim;
+            console.log(`    ${color(`${conf}%`)} ${file.filePath} ${pc.dim(`(${file.nodes.length} symbols)`)}`);
+        }
+    }
+    p.outro(result.summary);
+}
+//# sourceMappingURL=impact.js.map

package/dist/src/commands/impact.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/index.d.ts

@@ -0,0 +1,9 @@
+export { cmdInstall } from './install.js';
+export { cmdScan } from './scan.js';
+export { cmdServe } from './serve.js';
+export { cmdMcp } from './mcp.js';
+export { cmdDna } from './dna.js';
+export { cmdImpact } from './impact.js';
+export { cmdHookPre, cmdHookPost, cmdHookSessionStart, cmdHooksInstall, cmdHooksUninstall, } from './hooks.js';
+export { cmdUnbond } from './unbond.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/src/commands/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/commands/index.js

@@ -0,0 +1,9 @@
+export { cmdInstall } from './install.js';
+export { cmdScan } from './scan.js';
+export { cmdServe } from './serve.js';
+export { cmdMcp } from './mcp.js';
+export { cmdDna } from './dna.js';
+export { cmdImpact } from './impact.js';
+export { cmdHookPre, cmdHookPost, cmdHookSessionStart, cmdHooksInstall, cmdHooksUninstall, } from './hooks.js';
+export { cmdUnbond } from './unbond.js';
+//# sourceMappingURL=index.js.map

package/dist/src/commands/index.js.map

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package/dist/src/commands/init.d.ts

@@ -0,0 +1,2 @@
+export declare function cmdInit(): Promise<void>;
+//# sourceMappingURL=init.d.ts.map

package/dist/src/commands/init.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/commands/init.js

@@ -0,0 +1,132 @@
+import * as p from '@clack/prompts';
+import pc from 'picocolors';
+import { ensureBrainDir, ensureSymbioteHome, getBrainDbPath } from '#utils/config.js';
+import { createDatabaseWithRetry } from './shared.js';
+import { CortexRepository } from '#cortex/repository.js';
+import { CortexEngine } from '#cortex/engine.js';
+import { createCortexSchema, refreshSymbolsTable } from '#cortex/schema.js';
+export async function cmdInit() {
+    const { SmartInit } = await import('#init/index.js');
+    const projectRoot = process.cwd();
+    p.intro(pc.bold('Symbiote') + pc.dim(' — Initializing project brain'));
+    const symbioteHome = ensureSymbioteHome();
+    const brainDir = ensureBrainDir(projectRoot);
+    const dbPath = getBrainDbPath(projectRoot);
+    const db = await createDatabaseWithRetry(dbPath);
+    await createCortexSchema(db);
+    const cortexRepo = new CortexRepository(db);
+    const engine = new CortexEngine(cortexRepo);
+    const s1 = p.spinner();
+    s1.start('Scanning codebase (cortex pipeline)...');
+    const scanResult = await engine.run({
+        rootDir: projectRoot,
+        force: false,
+    });
+    await refreshSymbolsTable(db);
+    if (scanResult.totalFiles === 0) {
+        s1.stop(`Up to date ${pc.dim('(no changes)')}`);
+    }
+    else {
+        s1.stop(`Depth ${scanResult.maxDepth + 1}/8` +
+            pc.dim(` · ${scanResult.totalFiles} files · ${scanResult.totalNodes} nodes · ${scanResult.totalEdges} edges`));
+    }
+    const s2 = p.spinner();
+    s2.start('Analyzing project...');
+    const init = new SmartInit({
+        projectRoot,
+        symbioteHome,
+        brainDir,
+        scanResult: {
+            filesScanned: scanResult.totalFiles,
+            filesSkipped: 0,
+            nodesCreated: scanResult.totalNodes,
+            edgesCreated: scanResult.totalEdges,
+            embeddingsGenerated: 0,
+            errors: [],
+        },
+    });
+    const result = await init.run();
+    s2.stop('Project analyzed');
+    await db.close();
+    const lines = [];
+    if (result.rulesImported > 0) {
+        lines.push(`${pc.dim('Rules imported:')}   ${result.rulesImported}`);
+    }
+    if (result.techStack.length > 0) {
+        lines.push(`${pc.dim('Tech stack:')}      ${result.techStack.map((t) => t.name).join(', ')}`);
+    }
+    if (result.architectureSignals.length > 0) {
+        lines.push(`${pc.dim('Architecture:')}    ${result.architectureSignals
+            .slice(0, 3)
+            .map((s) => s.pattern)
+            .join(', ')}`);
+    }
+    if (result.intentEntriesCreated > 0) {
+        lines.push(`${pc.dim('Intent entries:')}  ${result.intentEntriesCreated} constraints/decisions`);
+    }
+    if (result.dnaEntriesImported > 0 || result.dnaEntriesLoaded > 0) {
+        lines.push(`${pc.dim('DNA entries:')}     ${result.dnaEntriesLoaded} loaded, ${result.dnaEntriesImported} imported`);
+    }
+    if (lines.length > 0) {
+        p.log.info(lines.join('\n'));
+    }
+    const { detectInstalledAgents, isBonded, connectWithHooks, ensureClaudeHooks } = await import('#init/agent-connector.js');
+    const agents = detectInstalledAgents();
+    const installed = agents.filter((a) => a.installed);
+    if (installed.length === 0) {
+        p.log.info(pc.dim('No AI agents detected. Install Claude Code, Cursor, or another supported host,\n' +
+            'then run `symbiote init` again.'));
+    }
+    else {
+        const alreadyBonded = installed.filter((a) => isBonded(a));
+        const unbonded = installed.filter((a) => !isBonded(a));
+        if (alreadyBonded.length > 0) {
+            for (const agent of alreadyBonded) {
+                if (agent.id === 'claude-code') {
+                    ensureClaudeHooks();
+                }
+                p.log.info(`${pc.green('✓')} ${agent.name} ${pc.dim('[already bonded]')}`);
+            }
+        }
+        if (unbonded.length > 0) {
+            const options = unbonded.map((a) => ({
+                value: a.id,
+                label: a.name,
+                hint: a.id === 'claude-code' ? 'MCP server + hooks' : 'MCP server',
+            }));
+            const selected = await p.multiselect({
+                message: 'Bond with detected hosts?',
+                options,
+                initialValues: unbonded.map((a) => a.id),
+                required: false,
+            });
+            if (p.isCancel(selected)) {
+                p.log.info(pc.dim('Skipped bonding.'));
+            }
+            else if (Array.isArray(selected) && selected.length > 0) {
+                const toBond = unbonded.filter((a) => selected.includes(a.id));
+                for (const agent of toBond) {
+                    const s3 = p.spinner();
+                    s3.start(`Bonding with ${agent.name}...`);
+                    const bondResult = connectWithHooks(agent);
+                    if (bondResult.mcp.success && bondResult.hooks.success) {
+                        const detail = agent.id === 'claude-code'
+                            ? 'MCP server added, hooks installed'
+                            : 'MCP config written';
+                        s3.stop(`${agent.name} — ${detail}`);
+                    }
+                    else if (bondResult.mcp.success) {
+                        s3.stop(`${agent.name} — MCP server added`);
+                        p.log.warn(`Hooks failed — run \`symbiote hooks install\` manually`);
+                    }
+                    else {
+                        s3.stop(`${agent.name} — failed`);
+                        p.log.error(bondResult.mcp.message);
+                    }
+                }
+            }
+        }
+    }
+    p.outro('Your project has a brain.');
+}
+//# sourceMappingURL=init.js.map

package/dist/src/commands/init.js.map

@@ -0,0 +1 @@
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package/dist/src/commands/install.d.ts

@@ -0,0 +1,2 @@
+export declare function cmdInstall(): Promise<void>;
+//# sourceMappingURL=install.d.ts.map

package/dist/src/commands/install.d.ts.map

@@ -0,0 +1 @@
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