symbiote-cli 0.1.0

package/dist/src/brain/embeddings.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/brain/embeddings.js

@@ -0,0 +1,24 @@
+export async function storeEmbedding(db, nodeId, vector) {
+    const arrayLiteral = `[${vector.join(',')}]`;
+    await db.run(`INSERT OR REPLACE INTO embeddings (node_id, vector) VALUES ($1, $2::FLOAT[384])`, nodeId, arrayLiteral);
+}
+export async function deleteEmbeddingsForFile(db, filePath) {
+    await db.run(`DELETE FROM embeddings WHERE node_id IN (
+            SELECT id FROM nodes WHERE file_path = $1
+        )`, filePath);
+}
+export async function semanticSearch(db, queryVector, limit = 10) {
+    const arrayLiteral = `[${queryVector.join(',')}]`;
+    const rows = await db.all(`SELECT
+            node_id,
+            array_cosine_similarity(vector, $1::FLOAT[384]) AS similarity
+         FROM embeddings
+         WHERE vector IS NOT NULL
+         ORDER BY similarity DESC
+         LIMIT $2`, arrayLiteral, limit);
+    return rows.map((r) => ({
+        nodeId: r.node_id,
+        distance: 1 - r.similarity,
+    }));
+}
+//# sourceMappingURL=embeddings.js.map

package/dist/src/brain/embeddings.js.map

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package/dist/src/brain/health/constraint-checker.d.ts

@@ -0,0 +1,16 @@
+import type { Repository } from '#storage/repository.js';
+import type { IntentStore } from '../intent.js';
+import type { ConstraintViolation, DescriptiveConstraint } from './types.js';
+export interface ConstraintCheckResult {
+    violations: ConstraintViolation[];
+    descriptive: DescriptiveConstraint[];
+}
+export declare class ConstraintChecker {
+    private repo;
+    private intent;
+    constructor(repo: Repository, intent: IntentStore);
+    check(): Promise<ConstraintCheckResult>;
+    private checkWithPattern;
+    private getFilesInScope;
+}
+//# sourceMappingURL=constraint-checker.d.ts.map

package/dist/src/brain/health/constraint-checker.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/constraint-checker.js

@@ -0,0 +1,93 @@
+import fs from 'node:fs';
+import { createRequire } from 'node:module';
+import { detectLanguage, getGrammar } from '#core/languages.js';
+const require = createRequire(import.meta.url);
+const Parser = require('tree-sitter');
+export class ConstraintChecker {
+    repo;
+    intent;
+    constructor(repo, intent) {
+        this.repo = repo;
+        this.intent = intent;
+    }
+    async check() {
+        const constraints = await this.intent.listEntries('constraint', {
+            status: 'active',
+        });
+        const violations = [];
+        const descriptive = [];
+        const allNodes = await this.repo.getAllNodes();
+        const allFilePaths = new Set();
+        for (const node of allNodes) {
+            allFilePaths.add(node.filePath);
+        }
+        for (const constraint of constraints) {
+            if (constraint.frontmatter.pattern) {
+                const found = await this.checkWithPattern(constraint, allFilePaths);
+                violations.push(...found);
+            }
+            else {
+                descriptive.push({
+                    constraintId: constraint.frontmatter.id,
+                    description: constraint.content,
+                    scope: constraint.frontmatter.scope,
+                });
+            }
+        }
+        return { violations, descriptive };
+    }
+    async checkWithPattern(constraint, allFilePaths) {
+        const pattern = constraint.frontmatter.pattern;
+        const violations = [];
+        const scope = constraint.frontmatter.scope;
+        const filePaths = this.getFilesInScope(scope, allFilePaths);
+        for (const filePath of filePaths) {
+            const lang = detectLanguage(filePath);
+            if (!lang)
+                continue;
+            const grammar = getGrammar(lang);
+            if (!grammar)
+                continue;
+            let source;
+            try {
+                source = fs.readFileSync(filePath, 'utf-8');
+            }
+            catch {
+                continue;
+            }
+            const parser = new Parser();
+            parser.setLanguage(grammar);
+            const tree = parser.parse(source);
+            const language = parser.getLanguage();
+            try {
+                const query = new Parser.Query(language, pattern);
+                const matches = query.matches(tree.rootNode);
+                for (const match of matches) {
+                    const firstCapture = match.captures[0];
+                    if (!firstCapture)
+                        continue;
+                    const node = firstCapture.node;
+                    violations.push({
+                        constraintId: constraint.frontmatter.id,
+                        constraintDescription: constraint.content,
+                        filePath,
+                        lineStart: node.startPosition.row + 1,
+                        lineEnd: node.endPosition.row + 1,
+                        matchedText: node.text.slice(0, 100),
+                    });
+                }
+            }
+            catch {
+                continue;
+            }
+        }
+        return violations;
+    }
+    getFilesInScope(scope, allFilePaths) {
+        if (scope === 'global') {
+            return [...allFilePaths];
+        }
+        return [...allFilePaths].filter((fp) => fp === scope || fp.startsWith(scope + '/') || fp.includes('/' + scope + '/'));
+    }
+}
+//# sourceMappingURL=constraint-checker.js.map

package/dist/src/brain/health/constraint-checker.js.map

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package/dist/src/brain/health/coupling-analyzer.d.ts

@@ -0,0 +1,9 @@
+import type { Repository } from '#storage/repository.js';
+import type { CouplingHotspot } from './types.js';
+import type { PreFetchedData } from './cycle-detector.js';
+export declare class CouplingAnalyzer {
+    private repo;
+    constructor(repo: Repository);
+    detect(preFetched?: PreFetchedData): Promise<CouplingHotspot[]>;
+}
+//# sourceMappingURL=coupling-analyzer.d.ts.map

package/dist/src/brain/health/coupling-analyzer.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/coupling-analyzer.js

@@ -0,0 +1,105 @@
+const EDGE_WEIGHTS = {
+    calls: 1.0,
+    extends: 1.0,
+    imports: 0.5,
+};
+const DEFAULT_EDGE_WEIGHT = 0.7;
+const MIN_THRESHOLD = 4;
+const PERCENTILE = 0.9;
+function edgeWeight(type) {
+    return EDGE_WEIGHTS[type] ?? DEFAULT_EDGE_WEIGHT;
+}
+function computeThreshold(weightedCounts) {
+    if (weightedCounts.length === 0)
+        return MIN_THRESHOLD;
+    const sorted = [...weightedCounts].sort((a, b) => a - b);
+    const idx = Math.floor(sorted.length * PERCENTILE);
+    const p90 = sorted[Math.min(idx, sorted.length - 1)];
+    return Math.max(p90, MIN_THRESHOLD);
+}
+export class CouplingAnalyzer {
+    repo;
+    constructor(repo) {
+        this.repo = repo;
+    }
+    async detect(preFetched) {
+        const allNodes = preFetched?.nodes ?? (await this.repo.getAllNodes());
+        const allEdges = preFetched?.edges ?? (await this.repo.getAllEdges());
+        if (allEdges.length === 0)
+            return [];
+        const nodeToFile = new Map();
+        for (const node of allNodes) {
+            nodeToFile.set(node.id, node.filePath);
+        }
+        const fileIncoming = new Map();
+        const fileOutgoing = new Map();
+        const fileFanIn = new Map();
+        const fileFanOut = new Map();
+        for (const edge of allEdges) {
+            const sourceFile = nodeToFile.get(edge.sourceId);
+            const targetFile = nodeToFile.get(edge.targetId);
+            if (!sourceFile || !targetFile || sourceFile === targetFile) {
+                continue;
+            }
+            const w = edgeWeight(edge.type);
+            if (!fileOutgoing.has(sourceFile)) {
+                fileOutgoing.set(sourceFile, new Set());
+            }
+            fileOutgoing.get(sourceFile).add(targetFile);
+            fileFanOut.set(sourceFile, (fileFanOut.get(sourceFile) ?? 0) + w);
+            if (!fileIncoming.has(targetFile)) {
+                fileIncoming.set(targetFile, new Set());
+            }
+            fileIncoming.get(targetFile).add(sourceFile);
+            fileFanIn.set(targetFile, (fileFanIn.get(targetFile) ?? 0) + w);
+        }
+        const allFiles = new Set([...fileIncoming.keys(), ...fileOutgoing.keys()]);
+        const weightedCounts = [];
+        for (const file of allFiles) {
+            const fanIn = fileFanIn.get(file) ?? 0;
+            const fanOut = fileFanOut.get(file) ?? 0;
+            weightedCounts.push(Math.max(fanIn, fanOut));
+        }
+        const threshold = computeThreshold(weightedCounts);
+        const hotspots = [];
+        for (const file of allFiles) {
+            const fanIn = fileFanIn.get(file) ?? 0;
+            const fanOut = fileFanOut.get(file) ?? 0;
+            const exceedsIn = fanIn >= threshold;
+            const exceedsOut = fanOut >= threshold;
+            if (!exceedsIn && !exceedsOut)
+                continue;
+            const incoming = fileIncoming.get(file)?.size ?? 0;
+            const outgoing = fileOutgoing.get(file)?.size ?? 0;
+            const coupledFiles = [
+                ...(fileIncoming.get(file) ?? []),
+                ...(fileOutgoing.get(file) ?? []),
+            ];
+            const uniqueCoupled = [...new Set(coupledFiles)];
+            let kind;
+            if (exceedsIn && exceedsOut) {
+                kind = 'both';
+            }
+            else if (exceedsIn) {
+                kind = 'fan-in';
+            }
+            else {
+                kind = 'fan-out';
+            }
+            hotspots.push({
+                filePath: file,
+                incomingEdges: incoming,
+                outgoingEdges: outgoing,
+                totalEdges: incoming + outgoing,
+                coupledFiles: uniqueCoupled,
+                fanIn,
+                fanOut,
+                weightedCount: fanIn + fanOut,
+                kind,
+            });
+        }
+        hotspots.sort((a, b) => b.totalEdges - a.totalEdges);
+        return hotspots;
+    }
+}
+//# sourceMappingURL=coupling-analyzer.js.map

package/dist/src/brain/health/coupling-analyzer.js.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/cycle-detector.d.ts

@@ -0,0 +1,12 @@
+import type { Repository, NodeRecord, EdgeRecord } from '#storage/repository.js';
+import type { CircularDep } from './types.js';
+export interface PreFetchedData {
+    nodes: NodeRecord[];
+    edges: EdgeRecord[];
+}
+export declare class CycleDetector {
+    private repo;
+    constructor(repo: Repository);
+    detect(preFetched?: PreFetchedData): Promise<CircularDep[]>;
+}
+//# sourceMappingURL=cycle-detector.d.ts.map

package/dist/src/brain/health/cycle-detector.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/cycle-detector.js

@@ -0,0 +1,79 @@
+export class CycleDetector {
+    repo;
+    constructor(repo) {
+        this.repo = repo;
+    }
+    async detect(preFetched) {
+        const allEdges = preFetched?.edges ?? (await this.repo.getAllEdges());
+        if (allEdges.length === 0)
+            return [];
+        const nodeMap = preFetched ? new Map(preFetched.nodes.map((n) => [n.id, n])) : undefined;
+        const adjacency = new Map();
+        for (const edge of allEdges) {
+            if (edge.sourceId === edge.targetId)
+                continue;
+            if (!adjacency.has(edge.sourceId)) {
+                adjacency.set(edge.sourceId, []);
+            }
+            adjacency.get(edge.sourceId).push(edge.targetId);
+        }
+        const cycles = [];
+        const visited = new Set();
+        const inStack = new Set();
+        const seen = new Set();
+        const resolveFilePaths = async (chain) => {
+            const filePaths = new Set();
+            for (const id of chain) {
+                if (nodeMap) {
+                    const node = nodeMap.get(id);
+                    if (node)
+                        filePaths.add(node.filePath);
+                }
+                else {
+                    const node = await this.repo.getNodeById(id);
+                    if (node)
+                        filePaths.add(node.filePath);
+                }
+            }
+            return filePaths;
+        };
+        const dfs = async (nodeId, nodePath) => {
+            if (inStack.has(nodeId)) {
+                const cycleStart = nodePath.indexOf(nodeId);
+                if (cycleStart < 0)
+                    return;
+                const chain = nodePath.slice(cycleStart);
+                const filePaths = await resolveFilePaths(chain);
+                if (filePaths.size <= 1)
+                    return;
+                const key = [...chain].sort().join(',');
+                if (seen.has(key))
+                    return;
+                seen.add(key);
+                cycles.push({
+                    chain,
+                    filePaths: [...filePaths],
+                });
+                return;
+            }
+            if (visited.has(nodeId))
+                return;
+            visited.add(nodeId);
+            inStack.add(nodeId);
+            const neighbors = adjacency.get(nodeId) ?? [];
+            nodePath.push(nodeId);
+            for (const neighbor of neighbors) {
+                await dfs(neighbor, nodePath);
+            }
+            nodePath.pop();
+            inStack.delete(nodeId);
+        };
+        for (const nodeId of adjacency.keys()) {
+            if (!visited.has(nodeId)) {
+                await dfs(nodeId, []);
+            }
+        }
+        return cycles;
+    }
+}
+//# sourceMappingURL=cycle-detector.js.map

package/dist/src/brain/health/cycle-detector.js.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/dead-code-detector.d.ts

@@ -0,0 +1,9 @@
+import type { Repository } from '#storage/repository.js';
+import type { DeadCodeEntry } from './types.js';
+import type { PreFetchedData } from './cycle-detector.js';
+export declare class DeadCodeDetector {
+    private repo;
+    constructor(repo: Repository);
+    detect(preFetched?: PreFetchedData): Promise<DeadCodeEntry[]>;
+}
+//# sourceMappingURL=dead-code-detector.d.ts.map

package/dist/src/brain/health/dead-code-detector.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"dead-code-detector.d.ts","sourceRoot":"","sources":["../../../../src/brain/health/dead-code-detector.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACzD,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAChD,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAU1D,qBAAa,gBAAgB;IACb,OAAO,CAAC,IAAI;gBAAJ,IAAI,EAAE,UAAU;IAE9B,MAAM,CAAC,UAAU,CAAC,EAAE,cAAc,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;CAiEtE"}

package/dist/src/brain/health/dead-code-detector.js

@@ -0,0 +1,72 @@
+const TRACKABLE_KINDS = new Set(['function', 'class', 'method', 'type', 'interface', 'variable']);
+const ENTRY_POINT_NAMES = new Set(['main', 'cli', 'handler', 'run', 'start', 'app', 'server']);
+function isTestFile(filePath) {
+    return /\/test\/|\.test\.|\.spec\./.test(filePath);
+}
+export class DeadCodeDetector {
+    repo;
+    constructor(repo) {
+        this.repo = repo;
+    }
+    async detect(preFetched) {
+        const allNodes = preFetched?.nodes ?? (await this.repo.getAllNodes());
+        if (allNodes.length === 0)
+            return [];
+        const allEdges = preFetched?.edges ?? (await this.repo.getAllEdges());
+        const nodeById = new Map(allNodes.map((n) => [n.id, n]));
+        const productionInbound = new Set();
+        const callerMap = new Map();
+        for (const edge of allEdges) {
+            if (edge.type === 'contains')
+                continue;
+            const sourceNode = nodeById.get(edge.sourceId);
+            const fromTest = sourceNode
+                ? isTestFile(sourceNode.filePath)
+                : isTestFile(edge.sourceId);
+            if (!fromTest) {
+                productionInbound.add(edge.targetId);
+            }
+            let callers = callerMap.get(edge.targetId);
+            if (!callers) {
+                callers = new Set();
+                callerMap.set(edge.targetId, callers);
+            }
+            callers.add(edge.sourceId);
+        }
+        const deadSet = new Set();
+        const dead = [];
+        for (const node of allNodes) {
+            if (!TRACKABLE_KINDS.has(node.type))
+                continue;
+            if (productionInbound.has(node.id))
+                continue;
+            if (ENTRY_POINT_NAMES.has(node.name))
+                continue;
+            deadSet.add(node.id);
+            dead.push({ node, reason: 'No dependents found' });
+        }
+        let changed = true;
+        while (changed) {
+            changed = false;
+            for (const node of allNodes) {
+                if (!TRACKABLE_KINDS.has(node.type))
+                    continue;
+                if (deadSet.has(node.id))
+                    continue;
+                if (ENTRY_POINT_NAMES.has(node.name))
+                    continue;
+                const callers = callerMap.get(node.id);
+                if (!callers)
+                    continue;
+                const allCallersDead = [...callers].every((cid) => deadSet.has(cid));
+                if (!allCallersDead)
+                    continue;
+                deadSet.add(node.id);
+                dead.push({ node, reason: 'Only referenced by dead code' });
+                changed = true;
+            }
+        }
+        return dead;
+    }
+}
+//# sourceMappingURL=dead-code-detector.js.map

package/dist/src/brain/health/dead-code-detector.js.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/history.d.ts

@@ -0,0 +1,21 @@
+import type { SymbioteDB } from '#storage/db.js';
+import type { HealthSnapshot } from './types.js';
+export interface SaveSnapshotInput {
+    score: number;
+    constraintScore: number;
+    circularDepScore: number;
+    deadCodeScore: number;
+    couplingScore: number;
+    constraintViolationCount: number;
+    circularDepCount: number;
+    deadCodeCount: number;
+    couplingHotspotCount: number;
+}
+export declare class HealthHistory {
+    private db;
+    constructor(db: SymbioteDB);
+    save(input: SaveSnapshotInput): Promise<void>;
+    list(limit: number): Promise<HealthSnapshot[]>;
+    latest(): Promise<HealthSnapshot | null>;
+}
+//# sourceMappingURL=history.d.ts.map

package/dist/src/brain/health/history.d.ts.map

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package/dist/src/brain/health/history.js

@@ -0,0 +1,35 @@
+export class HealthHistory {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    async save(input) {
+        const now = new Date().toISOString();
+        await this.db.run(`INSERT INTO health_snapshots
+             (score, constraint_score, circular_dep_score, dead_code_score, coupling_score,
+              constraint_violation_count, circular_dep_count, dead_code_count, coupling_hotspot_count,
+              created_at)
+             VALUES ($1, $2, $3, $4, $5, $6, $7, $8, $9, $10)`, input.score, input.constraintScore, input.circularDepScore, input.deadCodeScore, input.couplingScore, input.constraintViolationCount, input.circularDepCount, input.deadCodeCount, input.couplingHotspotCount, now);
+    }
+    async list(limit) {
+        const rows = await this.db.all('SELECT * FROM health_snapshots ORDER BY id DESC LIMIT $1', limit);
+        return rows.map((r) => ({
+            id: r.id,
+            score: r.score,
+            constraintScore: r.constraint_score,
+            circularDepScore: r.circular_dep_score,
+            deadCodeScore: r.dead_code_score,
+            couplingScore: r.coupling_score,
+            constraintViolationCount: r.constraint_violation_count,
+            circularDepCount: r.circular_dep_count,
+            deadCodeCount: r.dead_code_count,
+            couplingHotspotCount: r.coupling_hotspot_count,
+            createdAt: r.created_at,
+        }));
+    }
+    async latest() {
+        const rows = await this.list(1);
+        return rows.length > 0 ? rows[0] : null;
+    }
+}
+//# sourceMappingURL=history.js.map

package/dist/src/brain/health/history.js.map

@@ -0,0 +1 @@
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package/dist/src/brain/health/index.d.ts

@@ -0,0 +1,25 @@
+import type { Repository } from '#storage/repository.js';
+import type { SymbioteDB } from '#storage/db.js';
+import type { IntentStore } from '../intent.js';
+import type { HealthReport, HealthSnapshot } from './types.js';
+export declare class HealthEngine {
+    private repo;
+    private cycleDetector;
+    private deadCodeDetector;
+    private couplingAnalyzer;
+    private constraintChecker;
+    private history;
+    constructor(repo: Repository, intent: IntentStore, db: SymbioteDB);
+    analyze(): Promise<HealthReport>;
+    saveSnapshot(report: HealthReport): Promise<void>;
+    getHistory(limit: number): Promise<HealthSnapshot[]>;
+    getLatestSnapshot(): Promise<HealthSnapshot | null>;
+}
+export type { HealthReport, HealthSnapshot, ConstraintViolation, DescriptiveConstraint, CircularDep, DeadCodeEntry, CouplingHotspot, CategoryScore, } from './types.js';
+export { CycleDetector } from './cycle-detector.js';
+export { DeadCodeDetector } from './dead-code-detector.js';
+export { CouplingAnalyzer } from './coupling-analyzer.js';
+export { ConstraintChecker, type ConstraintCheckResult } from './constraint-checker.js';
+export { computeHealthScore, computeCategoryScore } from './scorer.js';
+export { HealthHistory, type SaveSnapshotInput } from './history.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/src/brain/health/index.d.ts.map

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