symbiote-cli 0.1.0

package/dist/src/storage/repository.js

@@ -0,0 +1,257 @@
+export class Repository {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    async upsertFile(path, hash) {
+        const now = new Date().toISOString();
+        await this.db.run(`INSERT INTO files (path, hash, last_scanned)
+             VALUES ($1, $2, $3)
+             ON CONFLICT(path) DO UPDATE SET hash = $2, last_scanned = $3`, path, hash, now);
+    }
+    async getFile(filePath) {
+        const rows = await this.db.all('SELECT * FROM files WHERE path = $1', filePath);
+        if (rows.length === 0)
+            return undefined;
+        const row = rows[0];
+        return {
+            path: row.path,
+            hash: row.hash,
+            lastScanned: row.last_scanned,
+        };
+    }
+    async isFileChanged(path, currentHash) {
+        const file = await this.getFile(path);
+        if (!file)
+            return true;
+        return file.hash !== currentHash;
+    }
+    async insertNodes(nodes) {
+        if (nodes.length === 0)
+            return;
+        const CHUNK_SIZE = 500;
+        await this.db.exec('BEGIN TRANSACTION');
+        try {
+            for (let i = 0; i < nodes.length; i += CHUNK_SIZE) {
+                const chunk = nodes.slice(i, i + CHUNK_SIZE);
+                const placeholders = [];
+                const params = [];
+                for (let j = 0; j < chunk.length; j++) {
+                    const offset = j * 7;
+                    placeholders.push(`($${offset + 1}, $${offset + 2}, $${offset + 3}, $${offset + 4}, $${offset + 5}, $${offset + 6}, $${offset + 7})`);
+                    const node = chunk[j];
+                    params.push(node.id, node.type, node.name, node.filePath, node.lineStart, node.lineEnd, JSON.stringify(node.metadata ?? {}));
+                }
+                await this.db.run(`INSERT OR REPLACE INTO nodes (id, type, name, file_path, line_start, line_end, metadata)
+                     VALUES ${placeholders.join(', ')}`, ...params);
+            }
+            await this.db.exec('COMMIT');
+        }
+        catch (err) {
+            await this.db.exec('ROLLBACK');
+            throw err;
+        }
+    }
+    async clearNodesForFile(filePath) {
+        await this.db.exec('BEGIN TRANSACTION');
+        try {
+            await this.db.run('DELETE FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file_path = $1)', filePath);
+            await this.db.run('DELETE FROM edges WHERE target_id IN (SELECT id FROM nodes WHERE file_path = $1)', filePath);
+            await this.db.run('DELETE FROM embeddings WHERE node_id IN (SELECT id FROM nodes WHERE file_path = $1)', filePath);
+            await this.db.run('DELETE FROM nodes WHERE file_path = $1', filePath);
+            await this.db.exec('COMMIT');
+        }
+        catch (err) {
+            await this.db.exec('ROLLBACK');
+            throw err;
+        }
+    }
+    async updateFileNodes(filePath, hash, nodes, edges) {
+        await this.db.exec('BEGIN TRANSACTION');
+        try {
+            await this.db.run('DELETE FROM edges WHERE source_id IN (SELECT id FROM nodes WHERE file_path = $1)', filePath);
+            await this.db.run('DELETE FROM nodes WHERE file_path = $1', filePath);
+            if (nodes.length > 0) {
+                const CHUNK_SIZE = 500;
+                for (let i = 0; i < nodes.length; i += CHUNK_SIZE) {
+                    const chunk = nodes.slice(i, i + CHUNK_SIZE);
+                    const placeholders = [];
+                    const params = [];
+                    for (let j = 0; j < chunk.length; j++) {
+                        const offset = j * 7;
+                        placeholders.push(`($${offset + 1}, $${offset + 2}, $${offset + 3}, $${offset + 4}, $${offset + 5}, $${offset + 6}, $${offset + 7})`);
+                        const node = chunk[j];
+                        params.push(node.id, node.type, node.name, node.filePath, node.lineStart, node.lineEnd, JSON.stringify(node.metadata ?? {}));
+                    }
+                    await this.db.run(`INSERT OR REPLACE INTO nodes (id, type, name, file_path, line_start, line_end, metadata)
+                         VALUES ${placeholders.join(', ')}`, ...params);
+                }
+            }
+            if (edges.length > 0) {
+                const CHUNK_SIZE = 500;
+                for (let i = 0; i < edges.length; i += CHUNK_SIZE) {
+                    const chunk = edges.slice(i, i + CHUNK_SIZE);
+                    const placeholders = [];
+                    const params = [];
+                    for (let j = 0; j < chunk.length; j++) {
+                        const offset = j * 3;
+                        placeholders.push(`($${offset + 1}, $${offset + 2}, $${offset + 3})`);
+                        params.push(chunk[j].sourceId, chunk[j].targetId, chunk[j].type);
+                    }
+                    await this.db.run(`INSERT INTO edges (source_id, target_id, type) VALUES ${placeholders.join(', ')}
+                         ON CONFLICT DO NOTHING`, ...params);
+                }
+            }
+            const now = new Date().toISOString();
+            await this.db.run(`INSERT INTO files (path, hash, last_scanned)
+                 VALUES ($1, $2, $3)
+                 ON CONFLICT(path) DO UPDATE SET hash = $2, last_scanned = $3`, filePath, hash, now);
+            await this.db.exec('COMMIT');
+        }
+        catch (err) {
+            await this.db.exec('ROLLBACK');
+            throw err;
+        }
+    }
+    async getNodesByFile(filePath) {
+        const rows = await this.db.all('SELECT * FROM nodes WHERE file_path = $1', filePath);
+        return rows.map(this.mapNodeRow);
+    }
+    async getNodeById(id) {
+        const rows = await this.db.all('SELECT * FROM nodes WHERE id = $1', id);
+        if (rows.length === 0)
+            return undefined;
+        return this.mapNodeRow(rows[0]);
+    }
+    async getNodesByIds(ids) {
+        if (ids.length === 0)
+            return new Map();
+        const placeholders = ids.map((_, i) => `$${i + 1}`).join(', ');
+        const rows = await this.db.all(`SELECT * FROM nodes WHERE id IN (${placeholders})`, ...ids);
+        const map = new Map();
+        for (const row of rows) {
+            map.set(row.id, this.mapNodeRow(row));
+        }
+        return map;
+    }
+    async searchNodesByName(query) {
+        const rows = await this.db.all('SELECT * FROM nodes WHERE name ILIKE $1 LIMIT 50', `%${query}%`);
+        return rows.map(this.mapNodeRow);
+    }
+    async insertEdges(edges) {
+        if (edges.length === 0)
+            return;
+        const CHUNK_SIZE = 500;
+        await this.db.exec('BEGIN TRANSACTION');
+        try {
+            for (let i = 0; i < edges.length; i += CHUNK_SIZE) {
+                const chunk = edges.slice(i, i + CHUNK_SIZE);
+                const placeholders = [];
+                const params = [];
+                for (let j = 0; j < chunk.length; j++) {
+                    const offset = j * 3;
+                    placeholders.push(`($${offset + 1}, $${offset + 2}, $${offset + 3})`);
+                    params.push(chunk[j].sourceId, chunk[j].targetId, chunk[j].type);
+                }
+                await this.db.run(`INSERT INTO edges (source_id, target_id, type) VALUES ${placeholders.join(', ')}
+                     ON CONFLICT DO NOTHING`, ...params);
+            }
+            await this.db.exec('COMMIT');
+        }
+        catch (err) {
+            await this.db.exec('ROLLBACK');
+            throw err;
+        }
+    }
+    async getDependencies(nodeId) {
+        const rows = await this.db.all('SELECT * FROM edges WHERE source_id = $1', nodeId);
+        return rows.map(this.mapEdgeRow);
+    }
+    async getDependents(nodeId) {
+        const rows = await this.db.all('SELECT * FROM edges WHERE target_id = $1', nodeId);
+        return rows.map(this.mapEdgeRow);
+    }
+    async getDependenciesBatch(nodeIds) {
+        if (nodeIds.length === 0)
+            return [];
+        const placeholders = nodeIds.map((_, i) => `$${i + 1}`).join(', ');
+        const rows = await this.db.all(`SELECT * FROM edges WHERE source_id IN (${placeholders})`, ...nodeIds);
+        return rows.map(this.mapEdgeRow);
+    }
+    async getDependentsBatch(nodeIds) {
+        if (nodeIds.length === 0)
+            return [];
+        const placeholders = nodeIds.map((_, i) => `$${i + 1}`).join(', ');
+        const rows = await this.db.all(`SELECT * FROM edges WHERE target_id IN (${placeholders})`, ...nodeIds);
+        return rows.map(this.mapEdgeRow);
+    }
+    async getStats() {
+        const rows = await this.db.all(`SELECT
+                (SELECT COUNT(*) FROM nodes) as nodes,
+                (SELECT COUNT(*) FROM edges) as edges,
+                (SELECT COUNT(*) FROM files) as files`);
+        return {
+            nodes: Number(rows[0].nodes),
+            edges: Number(rows[0].edges),
+            files: Number(rows[0].files),
+        };
+    }
+    async getNodeCountByType() {
+        const rows = await this.db.all('SELECT type, COUNT(*) as count FROM nodes GROUP BY type');
+        const result = {};
+        for (const row of rows) {
+            result[row.type] = Number(row.count);
+        }
+        return result;
+    }
+    async getHubs(limit = 20) {
+        const rows = await this.db.all(`SELECT n.*, COUNT(*) as edge_count
+             FROM nodes n
+             JOIN (
+                 SELECT source_id AS node_id FROM edges
+                 UNION ALL
+                 SELECT target_id AS node_id FROM edges
+             ) e ON e.node_id = n.id
+             GROUP BY n.id
+             ORDER BY edge_count DESC
+             LIMIT $1`, limit);
+        return rows.map((row) => ({
+            node: this.mapNodeRow(row),
+            edgeCount: Number(row.edge_count),
+        }));
+    }
+    async getAllNodes() {
+        const rows = await this.db.all('SELECT * FROM nodes');
+        return rows.map(this.mapNodeRow);
+    }
+    async getAllEdges() {
+        const rows = await this.db.all('SELECT * FROM edges');
+        return rows.map(this.mapEdgeRow);
+    }
+    mapNodeRow(row) {
+        let metadata = {};
+        try {
+            metadata = JSON.parse(row.metadata);
+        }
+        catch {
+            metadata = {};
+        }
+        return {
+            id: row.id,
+            type: row.type,
+            name: row.name,
+            filePath: row.file_path,
+            lineStart: row.line_start,
+            lineEnd: row.line_end,
+            metadata,
+        };
+    }
+    mapEdgeRow(row) {
+        return {
+            sourceId: row.source_id,
+            targetId: row.target_id,
+            type: row.type,
+        };
+    }
+}
+//# sourceMappingURL=repository.js.map

package/dist/src/storage/repository.js.map

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package/dist/src/utils/config.d.ts

@@ -0,0 +1,18 @@
+export declare const BRAIN_DIR = ".brain";
+export declare const SYMBIOTE_HOME: string;
+export interface BrainConfig {
+    version: number;
+    projectName?: string;
+}
+export interface GlobalConfig {
+    version: number;
+}
+export declare function ensureBrainDir(projectRoot: string): string;
+export declare function ensureSymbioteHome(): string;
+export declare function getBrainDbPath(projectRoot: string): string;
+export declare const DEFAULT_PORT = 3333;
+export declare function getProjectPort(projectRoot: string): number;
+export declare function writePortFile(projectRoot: string, port: number): void;
+export declare function clearPortFile(projectRoot: string): void;
+export declare function getServerPort(): number;
+//# sourceMappingURL=config.d.ts.map

package/dist/src/utils/config.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../../src/utils/config.ts"],"names":[],"mappings":"AAIA,eAAO,MAAM,SAAS,WAAW,CAAC;AAClC,eAAO,MAAM,aAAa,QAAuC,CAAC;AAElE,MAAM,WAAW,WAAW;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,CAAC,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,YAAY;IACzB,OAAO,EAAE,MAAM,CAAC;CACnB;AAED,wBAAgB,cAAc,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CA0B1D;AAED,wBAAgB,kBAAkB,IAAI,MAAM,CAqB3C;AAED,wBAAgB,cAAc,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAE1D;AAED,eAAO,MAAM,YAAY,OAAO,CAAC;AAIjC,wBAAgB,cAAc,CAAC,WAAW,EAAE,MAAM,GAAG,MAAM,CAc1D;AAED,wBAAgB,aAAa,CAAC,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAIrE;AAED,wBAAgB,aAAa,CAAC,WAAW,EAAE,MAAM,GAAG,IAAI,CAOvD;AAED,wBAAgB,aAAa,IAAI,MAAM,CAEtC"}

package/dist/src/utils/config.js

@@ -0,0 +1,93 @@
+import fs from 'node:fs';
+import path from 'node:path';
+import os from 'node:os';
+export const BRAIN_DIR = '.brain';
+export const SYMBIOTE_HOME = path.join(os.homedir(), '.symbiote');
+export function ensureBrainDir(projectRoot) {
+    const brainDir = path.join(projectRoot, BRAIN_DIR);
+    fs.mkdirSync(brainDir, { recursive: true });
+    const gitignorePath = path.join(brainDir, '.gitignore');
+    if (!fs.existsSync(gitignorePath)) {
+        fs.writeFileSync(gitignorePath, 'symbiote.db\nport\n');
+    }
+    const configPath = path.join(brainDir, 'config.json');
+    if (!fs.existsSync(configPath)) {
+        const config = {
+            version: 1,
+            projectName: path.basename(projectRoot),
+        };
+        fs.writeFileSync(configPath, JSON.stringify(config, null, 4) + '\n');
+    }
+    fs.mkdirSync(path.join(brainDir, 'intent', 'decisions'), {
+        recursive: true,
+    });
+    fs.mkdirSync(path.join(brainDir, 'intent', 'constraints'), {
+        recursive: true,
+    });
+    return brainDir;
+}
+export function ensureSymbioteHome() {
+    fs.mkdirSync(SYMBIOTE_HOME, { recursive: true });
+    const configPath = path.join(SYMBIOTE_HOME, 'config.json');
+    if (!fs.existsSync(configPath)) {
+        const config = { version: 1 };
+        fs.writeFileSync(configPath, JSON.stringify(config, null, 4) + '\n');
+    }
+    fs.mkdirSync(path.join(SYMBIOTE_HOME, 'dna', 'style'), { recursive: true });
+    fs.mkdirSync(path.join(SYMBIOTE_HOME, 'dna', 'preferences'), {
+        recursive: true,
+    });
+    fs.mkdirSync(path.join(SYMBIOTE_HOME, 'dna', 'anti-patterns'), {
+        recursive: true,
+    });
+    fs.mkdirSync(path.join(SYMBIOTE_HOME, 'dna', 'decisions'), {
+        recursive: true,
+    });
+    return SYMBIOTE_HOME;
+}
+export function getBrainDbPath(projectRoot) {
+    return path.join(projectRoot, BRAIN_DIR, 'symbiote.db');
+}
+export const DEFAULT_PORT = 3333;
+const PORT_RANGE_START = 3334;
+const PORT_RANGE_END = 9999;
+export function getProjectPort(projectRoot) {
+    const envPort = process.env.SYMBIOTE_PORT;
+    if (envPort) {
+        const parsed = parseInt(envPort, 10);
+        if (!isNaN(parsed) && parsed > 0 && parsed <= 65535)
+            return parsed;
+    }
+    const portFile = path.join(projectRoot, BRAIN_DIR, 'port');
+    if (fs.existsSync(portFile)) {
+        const stored = parseInt(fs.readFileSync(portFile, 'utf-8').trim(), 10);
+        if (!isNaN(stored) && stored > 0 && stored <= 65535)
+            return stored;
+    }
+    return portFromPath(projectRoot);
+}
+export function writePortFile(projectRoot, port) {
+    const portFile = path.join(projectRoot, BRAIN_DIR, 'port');
+    fs.mkdirSync(path.dirname(portFile), { recursive: true });
+    fs.writeFileSync(portFile, String(port) + '\n');
+}
+export function clearPortFile(projectRoot) {
+    const portFile = path.join(projectRoot, BRAIN_DIR, 'port');
+    try {
+        fs.unlinkSync(portFile);
+    }
+    catch {
+        // Already gone
+    }
+}
+export function getServerPort() {
+    return getProjectPort(process.cwd());
+}
+function portFromPath(projectRoot) {
+    let hash = 0;
+    for (let i = 0; i < projectRoot.length; i++) {
+        hash = ((hash << 5) - hash + projectRoot.charCodeAt(i)) | 0;
+    }
+    return PORT_RANGE_START + (Math.abs(hash) % (PORT_RANGE_END - PORT_RANGE_START));
+}
+//# sourceMappingURL=config.js.map

package/dist/src/utils/config.js.map

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package/dist/src/utils/files.d.ts

@@ -0,0 +1,3 @@
+export declare function walkFiles(rootDir: string, ignoreDirs?: string[]): Promise<string[]>;
+export declare function hashFileContent(filePath: string, content?: string): string;
+//# sourceMappingURL=files.d.ts.map

package/dist/src/utils/files.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"files.d.ts","sourceRoot":"","sources":["../../../src/utils/files.ts"],"names":[],"mappings":"AAqBA,wBAAsB,SAAS,CAC3B,OAAO,EAAE,MAAM,EACf,UAAU,GAAE,MAAM,EAAmB,GACtC,OAAO,CAAC,MAAM,EAAE,CAAC,CA4BnB;AAED,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAG1E"}

package/dist/src/utils/files.js

@@ -0,0 +1,52 @@
+import fs from 'node:fs/promises';
+import path from 'node:path';
+import crypto from 'node:crypto';
+import { readFileSync } from 'node:fs';
+import { detectLanguage } from '#core/languages.js';
+const DEFAULT_IGNORE = [
+    'node_modules',
+    '.git',
+    '.brain',
+    'dist',
+    'build',
+    '.next',
+    '.turbo',
+    'coverage',
+    '__pycache__',
+    '.venv',
+    'vendor',
+    'target',
+];
+export async function walkFiles(rootDir, ignoreDirs = DEFAULT_IGNORE) {
+    const files = [];
+    const ignoreSet = new Set(ignoreDirs);
+    async function walk(dir) {
+        let entries;
+        try {
+            entries = await fs.readdir(dir, { withFileTypes: true });
+        }
+        catch {
+            return;
+        }
+        for (const entry of entries) {
+            if (ignoreSet.has(entry.name))
+                continue;
+            if (entry.name.startsWith('.'))
+                continue;
+            const fullPath = path.join(dir, entry.name);
+            if (entry.isDirectory()) {
+                await walk(fullPath);
+            }
+            else if (entry.isFile() && detectLanguage(fullPath)) {
+                files.push(fullPath);
+            }
+        }
+    }
+    await walk(rootDir);
+    return files;
+}
+export function hashFileContent(filePath, content) {
+    const source = content ?? readFileSync(filePath, 'utf-8');
+    return crypto.createHash('sha256').update(source).digest('hex').slice(0, 32);
+}
+//# sourceMappingURL=files.js.map

package/dist/src/utils/files.js.map

@@ -0,0 +1 @@
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package/dist/src/utils/strings.d.ts

@@ -0,0 +1,2 @@
+export declare function slugify(text: string, maxLength?: number): string;
+//# sourceMappingURL=strings.d.ts.map

package/dist/src/utils/strings.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"strings.d.ts","sourceRoot":"","sources":["../../../src/utils/strings.ts"],"names":[],"mappings":"AAAA,wBAAgB,OAAO,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,SAAK,GAAG,MAAM,CAS5D"}

package/dist/src/utils/strings.js

@@ -0,0 +1,11 @@
+export function slugify(text, maxLength = 50) {
+    return text
+        .toLowerCase()
+        .replace(/[^a-z0-9\s-]/g, '')
+        .replace(/\s+/g, '-')
+        .replace(/-+/g, '-')
+        .replace(/^-|-$/g, '')
+        .slice(0, maxLength)
+        .replace(/-$/, '');
+}
+//# sourceMappingURL=strings.js.map

package/dist/src/utils/strings.js.map

@@ -0,0 +1 @@
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