symbiote-cli 0.1.0

package/dist/src/mcp/tools/graph-tools.js

@@ -0,0 +1,45 @@
+import { executePgqQuery } from '#cortex/pgq-queries.js';
+import { wrapResponse, getMaxDepth } from '../tool-response.js';
+export function isLegacyQueryFormat(input) {
+    return 'type' in input && typeof input.type === 'string';
+}
+export async function handleQueryGraphV2(ctx, input) {
+    const rows = await executePgqQuery(ctx.db, input.query);
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    return wrapResponse(rows, depth, false);
+}
+export async function handleGetContextForSymbol(ctx, input) {
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    const matches = await ctx.cortexRepo.getSymbolByName(input.symbol);
+    if (matches.length === 0) {
+        const byId = await ctx.cortexRepo.getSymbolById(input.symbol);
+        if (!byId) {
+            return wrapResponse({ error: `Symbol '${input.symbol}' not found` }, depth, false);
+        }
+        matches.push(byId);
+    }
+    const symbol = matches[0];
+    const refs = await ctx.cortexRepo.getReferencesForSymbol(symbol.id);
+    const callees = await ctx.cortexRepo.getCallsFrom(symbol.id);
+    const result = {
+        symbol,
+        callers: refs.callers.map((c) => ({
+            sourceId: c.sourceId,
+            line: c.line,
+            confidence: c.confidence,
+        })),
+        callees: callees.map((c) => ({
+            targetId: c.targetId,
+            line: c.line,
+            confidence: c.confidence,
+        })),
+        importers: refs.importers.map((i) => ({
+            sourceId: i.sourceId,
+            kind: i.kind,
+        })),
+        extenders: refs.extenders.map((e) => ({ sourceId: e.sourceId })),
+        implementors: refs.implementors.map((i) => ({ sourceId: i.sourceId })),
+    };
+    return wrapResponse(result, depth, false);
+}
+//# sourceMappingURL=graph-tools.js.map

package/dist/src/mcp/tools/graph-tools.js.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/health-tools.d.ts

@@ -0,0 +1,5 @@
+import type { ServerContext } from '../context.js';
+import type { HealthReport } from '#brain/health/index.js';
+import type { ToolResponse } from '#cortex/types.js';
+export declare function handleGetHealth(ctx: ServerContext): Promise<ToolResponse<HealthReport>>;
+//# sourceMappingURL=health-tools.d.ts.map

package/dist/src/mcp/tools/health-tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/health-tools.js

@@ -0,0 +1,7 @@
+import { wrapResponse, getMaxDepth } from '../tool-response.js';
+export async function handleGetHealth(ctx) {
+    const report = await ctx.health.analyze();
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    return wrapResponse(report, depth, false);
+}
+//# sourceMappingURL=health-tools.js.map

package/dist/src/mcp/tools/health-tools.js.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/impact-tools.d.ts

@@ -0,0 +1,21 @@
+import { ImpactAnalyzer } from '#core/impact.js';
+import type { ImpactResult } from '#core/impact.js';
+import type { GitImpactResult } from '#core/git-impact.js';
+import type { GraphInstance } from '#core/types.js';
+import type { CortexRepository } from '#cortex/repository.js';
+import type { ToolResponse } from '#cortex/types.js';
+export interface ImpactToolContext {
+    graph: GraphInstance;
+    impact: ImpactAnalyzer;
+    cortexRepo: CortexRepository;
+}
+export interface GetImpactInput {
+    target: string;
+    maxDepth?: number;
+}
+export declare function handleGetImpact(ctx: ImpactToolContext, input: GetImpactInput): Promise<ToolResponse<ImpactResult>>;
+export interface DetectChangesInput {
+    cwd?: string;
+}
+export declare function handleDetectChanges(ctx: ImpactToolContext, input: DetectChangesInput): Promise<ToolResponse<GitImpactResult>>;
+//# sourceMappingURL=impact-tools.d.ts.map

package/dist/src/mcp/tools/impact-tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/impact-tools.js

@@ -0,0 +1,23 @@
+import { GitImpactAnalyzer } from '#core/git-impact.js';
+import { wrapResponse, getMaxDepth } from '../tool-response.js';
+export async function handleGetImpact(ctx, input) {
+    const maxDepth = input.maxDepth ?? 3;
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    if (!ctx.graph.hasNode(input.target)) {
+        return wrapResponse({
+            depths: {
+                0: [{ node: input.target, depth: 0, path: [input.target], confidence: 1.0 }],
+            },
+            summary: { totalAffected: 0, criticalPaths: 0, riskLevel: 'LOW' },
+        }, depth, false);
+    }
+    const result = ctx.impact.getBlastRadius(input.target, maxDepth);
+    return wrapResponse(result, depth, false);
+}
+export async function handleDetectChanges(ctx, input) {
+    const gitImpact = new GitImpactAnalyzer(ctx.graph);
+    const result = await gitImpact.analyzeWorkingChanges(input.cwd);
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    return wrapResponse(result, depth, false);
+}
+//# sourceMappingURL=impact-tools.js.map

package/dist/src/mcp/tools/impact-tools.js.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/intent-tools.d.ts

@@ -0,0 +1,32 @@
+import type { ServerContext } from '../context.js';
+import type { IntentEntry } from '#brain/intent.js';
+export interface GetConstraintsInput {
+    scope?: string;
+}
+export interface GetConstraintsOutput {
+    constraints: IntentEntry[];
+}
+export declare function handleGetConstraints(ctx: ServerContext, input: GetConstraintsInput): Promise<GetConstraintsOutput>;
+export interface GetDecisionsInput {
+    scope?: string;
+}
+export interface GetDecisionsOutput {
+    decisions: IntentEntry[];
+}
+export declare function handleGetDecisions(ctx: ServerContext, input: GetDecisionsInput): Promise<GetDecisionsOutput>;
+export interface ProposeDecisionInput {
+    id: string;
+    content: string;
+    scope: string;
+}
+export interface ProposeEntryOutput {
+    entry: IntentEntry;
+}
+export declare function handleProposeDecision(ctx: ServerContext, input: ProposeDecisionInput): ProposeEntryOutput;
+export interface ProposeConstraintInput {
+    id: string;
+    content: string;
+    scope: string;
+}
+export declare function handleProposeConstraint(ctx: ServerContext, input: ProposeConstraintInput): ProposeEntryOutput;
+//# sourceMappingURL=intent-tools.d.ts.map

package/dist/src/mcp/tools/intent-tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/intent-tools.js

@@ -0,0 +1,77 @@
+const MAX_ID_LENGTH = 200;
+function validateId(id) {
+    if (id.length > MAX_ID_LENGTH) {
+        throw new Error(`Invalid id: must not exceed ${MAX_ID_LENGTH} characters`);
+    }
+    if (id.includes('/') || id.includes('\\') || id.includes('..')) {
+        throw new Error('Invalid id: must not contain path separators or ".."');
+    }
+    if (id.includes('\x00') || /[\x00-\x1f]/.test(id)) {
+        throw new Error('Invalid id: must not contain null bytes or control characters');
+    }
+}
+function validateScope(scope) {
+    if (scope.length > MAX_ID_LENGTH) {
+        throw new Error(`Invalid scope: must not exceed ${MAX_ID_LENGTH} characters`);
+    }
+    if (scope.includes('..') || scope.includes('\x00') || /[\x00-\x1f]/.test(scope)) {
+        throw new Error('Invalid scope: must not contain ".." or control characters');
+    }
+}
+export async function handleGetConstraints(ctx, input) {
+    const constraints = await ctx.intent.listEntries('constraint');
+    if (input.scope) {
+        return {
+            constraints: constraints.filter((c) => c.frontmatter.scope === 'global' ||
+                c.frontmatter.scope === '*' ||
+                input.scope.startsWith(c.frontmatter.scope)),
+        };
+    }
+    return { constraints };
+}
+export async function handleGetDecisions(ctx, input) {
+    const decisions = await ctx.intent.listEntries('decision');
+    if (input.scope) {
+        return {
+            decisions: decisions.filter((d) => d.frontmatter.scope === 'global' ||
+                d.frontmatter.scope === '*' ||
+                input.scope.startsWith(d.frontmatter.scope)),
+        };
+    }
+    return { decisions };
+}
+export function handleProposeDecision(ctx, input) {
+    validateId(input.id);
+    validateScope(input.scope);
+    const entry = {
+        frontmatter: {
+            id: input.id,
+            type: 'decision',
+            scope: input.scope,
+            status: 'proposed',
+            author: 'ai',
+            createdAt: new Date().toISOString().split('T')[0],
+        },
+        content: input.content,
+    };
+    ctx.intent.writeEntry(entry);
+    return { entry };
+}
+export function handleProposeConstraint(ctx, input) {
+    validateId(input.id);
+    validateScope(input.scope);
+    const entry = {
+        frontmatter: {
+            id: input.id,
+            type: 'constraint',
+            scope: input.scope,
+            status: 'proposed',
+            author: 'ai',
+            createdAt: new Date().toISOString().split('T')[0],
+        },
+        content: input.content,
+    };
+    ctx.intent.writeEntry(entry);
+    return { entry };
+}
+//# sourceMappingURL=intent-tools.js.map

package/dist/src/mcp/tools/intent-tools.js.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/project-tools.d.ts

@@ -0,0 +1,53 @@
+import type { ServerContext } from '../context.js';
+import type { NodeRecord } from '#storage/repository.js';
+import type { IntentEntry } from '#brain/intent.js';
+import type { ToolResponse } from '#cortex/types.js';
+export interface ProjectOverviewOutput {
+    totalNodes: number;
+    totalEdges: number;
+    totalFiles: number;
+    nodesByType: Record<string, number>;
+    constraints: IntentEntry[];
+    decisions: IntentEntry[];
+}
+export declare function handleGetProjectOverview(ctx: ServerContext): Promise<ToolResponse<ProjectOverviewOutput>>;
+export interface GetContextForFileInput {
+    filePath: string;
+}
+export interface FileContextOutput {
+    filePath: string;
+    nodes: NodeRecord[];
+    dependencies: Array<{
+        node: NodeRecord;
+        type: string;
+    }>;
+    dependents: Array<{
+        node: NodeRecord;
+        type: string;
+    }>;
+    constraints: IntentEntry[];
+    decisions: IntentEntry[];
+}
+export declare function handleGetContextForFile(ctx: ServerContext, input: GetContextForFileInput): Promise<ToolResponse<FileContextOutput>>;
+export interface QueryGraphInput {
+    query: string;
+    type: 'search' | 'dependencies' | 'dependents' | 'hubs';
+    limit?: number;
+}
+export interface QueryGraphOutput {
+    results: NodeRecord[];
+    edgeCounts?: number[];
+}
+export declare function handleQueryGraph(ctx: ServerContext, input: QueryGraphInput): Promise<ToolResponse<QueryGraphOutput>>;
+export interface SemanticSearchInput {
+    query: string;
+    limit?: number;
+}
+export interface SemanticSearchOutput {
+    results: Array<{
+        node: NodeRecord | null;
+        distance: number;
+    }>;
+}
+export declare function handleSemanticSearch(ctx: ServerContext, input: SemanticSearchInput): Promise<ToolResponse<SemanticSearchOutput>>;
+//# sourceMappingURL=project-tools.d.ts.map

package/dist/src/mcp/tools/project-tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/project-tools.js

@@ -0,0 +1,91 @@
+import { wrapResponse, getMaxDepth } from '../tool-response.js';
+export async function handleGetProjectOverview(ctx) {
+    const overview = await ctx.graph.getOverview();
+    const constraints = await ctx.intent.listEntries('constraint', {
+        status: 'active',
+    });
+    const decisions = await ctx.intent.listEntries('decision', {
+        status: 'active',
+    });
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    return wrapResponse({
+        totalNodes: overview.totalNodes,
+        totalEdges: overview.totalEdges,
+        totalFiles: overview.totalFiles,
+        nodesByType: overview.nodesByType,
+        constraints,
+        decisions,
+    }, depth, false);
+}
+export async function handleGetContextForFile(ctx, input) {
+    const fileCtx = await ctx.graph.getFileContext(input.filePath);
+    const allConstraints = await ctx.intent.listEntries('constraint');
+    const constraints = allConstraints.filter((c) => c.frontmatter.scope === 'global' || input.filePath.startsWith(c.frontmatter.scope));
+    const allDecisions = await ctx.intent.listEntries('decision');
+    const decisions = allDecisions.filter((d) => d.frontmatter.scope === 'global' || input.filePath.startsWith(d.frontmatter.scope));
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    return wrapResponse({
+        filePath: input.filePath,
+        nodes: fileCtx.nodes,
+        dependencies: fileCtx.dependencies.map((d) => ({
+            node: d.node,
+            type: d.edge.type,
+        })),
+        dependents: fileCtx.dependents.map((d) => ({
+            node: d.node,
+            type: d.edge.type,
+        })),
+        constraints,
+        decisions,
+    }, depth, false);
+}
+export async function handleQueryGraph(ctx, input) {
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    switch (input.type) {
+        case 'search': {
+            const results = await ctx.search.textSearch(input.query);
+            return wrapResponse({ results: results.map((r) => r.node) }, depth, false);
+        }
+        case 'dependencies':
+            return wrapResponse({
+                results: await ctx.graph.getDependencies(input.query),
+            }, depth, false);
+        case 'dependents':
+            return wrapResponse({
+                results: await ctx.graph.getDependents(input.query),
+            }, depth, false);
+        case 'hubs': {
+            const hubs = await ctx.graph.getHubs(input.limit ?? 20);
+            return wrapResponse({
+                results: hubs.map((h) => h.node),
+                edgeCounts: hubs.map((h) => h.edgeCount),
+            }, depth, false);
+        }
+    }
+}
+export async function handleSemanticSearch(ctx, input) {
+    const limit = input.limit ?? 10;
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    try {
+        const results = await ctx.search.search(input.query, { limit });
+        if (results.length > 0) {
+            return wrapResponse({
+                results: results.map((r) => ({
+                    node: r.node,
+                    distance: 1 - r.score,
+                })),
+            }, depth, false);
+        }
+    }
+    catch (err) {
+        console.warn('[symbiote] Semantic search failed, falling back to text:', err instanceof Error ? err.message : String(err));
+    }
+    const textResults = await ctx.search.textSearch(input.query, limit);
+    return wrapResponse({
+        results: textResults.map((r) => ({
+            node: r.node,
+            distance: 1 - r.score,
+        })),
+    }, depth, false);
+}
+//# sourceMappingURL=project-tools.js.map

package/dist/src/mcp/tools/project-tools.js.map

@@ -0,0 +1 @@
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package/dist/src/mcp/tools/rename-tool.d.ts

@@ -0,0 +1,25 @@
+import type { CortexRepository } from '#cortex/repository.js';
+import type { ToolResponse } from '#cortex/types.js';
+export interface RenameToolContext {
+    cortexRepo: CortexRepository;
+    rootDir: string;
+}
+export interface RenameSymbolInput {
+    symbol: string;
+    newName: string;
+    scope?: 'file' | 'project';
+}
+export interface RenameChange {
+    file: string;
+    line: number;
+    oldText: string;
+    newText: string;
+}
+export interface RenameResult {
+    changes: RenameChange[];
+}
+export interface RenameError {
+    error: string;
+}
+export declare function handleRenameSymbol(ctx: RenameToolContext, input: RenameSymbolInput): Promise<ToolResponse<RenameResult | RenameError>>;
+//# sourceMappingURL=rename-tool.d.ts.map

package/dist/src/mcp/tools/rename-tool.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"rename-tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp/tools/rename-tool.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAC9D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAC;AAGrD,MAAM,WAAW,iBAAiB;IAC9B,UAAU,EAAE,gBAAgB,CAAC;IAC7B,OAAO,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,iBAAiB;IAC9B,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC9B;AAED,MAAM,WAAW,YAAY;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,EAAE,MAAM,CAAC;CACnB;AAED,MAAM,WAAW,YAAY;IACzB,OAAO,EAAE,YAAY,EAAE,CAAC;CAC3B;AAED,MAAM,WAAW,WAAW;IACxB,KAAK,EAAE,MAAM,CAAC;CACjB;AAED,wBAAsB,kBAAkB,CACpC,GAAG,EAAE,iBAAiB,EACtB,KAAK,EAAE,iBAAiB,GACzB,OAAO,CAAC,YAAY,CAAC,YAAY,GAAG,WAAW,CAAC,CAAC,CAqBnD"}

package/dist/src/mcp/tools/rename-tool.js

@@ -0,0 +1,106 @@
+import { readFileSync } from 'node:fs';
+import { resolve } from 'node:path';
+import { wrapResponse, getMaxDepth } from '../tool-response.js';
+export async function handleRenameSymbol(ctx, input) {
+    const depth = await getMaxDepth(ctx.cortexRepo);
+    const matches = await ctx.cortexRepo.getSymbolByName(input.symbol);
+    if (matches.length === 0) {
+        const byId = await ctx.cortexRepo.getSymbolById(input.symbol);
+        if (!byId) {
+            return wrapResponse({ error: `Symbol '${input.symbol}' not found` }, depth, false);
+        }
+        matches.push(byId);
+    }
+    const symbol = matches[0];
+    const refs = await ctx.cortexRepo.getReferencesForSymbol(symbol.id);
+    const changes = [];
+    addDefinitionChange(ctx, symbol, input.newName, changes);
+    addCallerChanges(ctx, refs.callers, symbol.name, input.newName, changes);
+    addImportChanges(ctx, refs.importers, symbol.name, input.newName, changes);
+    return wrapResponse({ changes }, depth, false);
+}
+function addDefinitionChange(ctx, symbol, newName, changes) {
+    const content = readFileSafe(ctx.rootDir, symbol.filePath);
+    if (!content)
+        return;
+    const lines = content.split('\n');
+    const line = lines[symbol.lineStart - 1];
+    if (!line)
+        return;
+    const idx = line.indexOf(symbol.name);
+    if (idx === -1)
+        return;
+    changes.push({
+        file: symbol.filePath,
+        line: symbol.lineStart,
+        oldText: line,
+        newText: line.substring(0, idx) + newName + line.substring(idx + symbol.name.length),
+    });
+}
+function addCallerChanges(ctx, callers, oldName, newName, changes) {
+    for (const caller of callers) {
+        if (!caller.line)
+            continue;
+        const filePath = extractFilePath(caller.sourceId);
+        if (!filePath)
+            continue;
+        const content = readFileSafe(ctx.rootDir, filePath);
+        if (!content)
+            continue;
+        const lines = content.split('\n');
+        const lineText = lines[caller.line - 1];
+        if (!lineText || !lineText.includes(oldName))
+            continue;
+        changes.push({
+            file: filePath,
+            line: caller.line,
+            oldText: lineText,
+            newText: lineText.replaceAll(oldName, newName),
+        });
+    }
+}
+function addImportChanges(ctx, importers, oldName, newName, changes) {
+    for (const imp of importers) {
+        if (!imp.line)
+            continue;
+        const importerName = imp.originalName ?? oldName;
+        if (importerName !== oldName)
+            continue;
+        const filePath = extractFilePath(imp.sourceId);
+        if (!filePath)
+            continue;
+        const content = readFileSafe(ctx.rootDir, filePath);
+        if (!content)
+            continue;
+        const lines = content.split('\n');
+        const lineText = lines[imp.line - 1];
+        if (!lineText || !lineText.includes(oldName))
+            continue;
+        changes.push({
+            file: filePath,
+            line: imp.line,
+            oldText: lineText,
+            newText: lineText.replaceAll(oldName, newName),
+        });
+    }
+}
+function extractFilePath(nodeId) {
+    const prefixes = ['fn:', 'class:', 'method:', 'interface:', 'type:', 'var:', 'file:'];
+    for (const prefix of prefixes) {
+        if (nodeId.startsWith(prefix)) {
+            const rest = nodeId.slice(prefix.length);
+            const colonIdx = rest.indexOf(':');
+            return colonIdx === -1 ? rest : rest.substring(0, colonIdx);
+        }
+    }
+    return null;
+}
+function readFileSafe(rootDir, filePath) {
+    try {
+        return readFileSync(resolve(rootDir, filePath), 'utf-8');
+    }
+    catch {
+        return null;
+    }
+}
+//# sourceMappingURL=rename-tool.js.map

package/dist/src/mcp/tools/rename-tool.js.map

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package/dist/src/mcp/tools/trace-tools.d.ts

@@ -0,0 +1,4 @@
+import type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import type { CortexRepository } from '#cortex/repository.js';
+export declare function registerTraceTools(server: McpServer, repo: CortexRepository): void;
+//# sourceMappingURL=trace-tools.d.ts.map

package/dist/src/mcp/tools/trace-tools.d.ts.map

@@ -0,0 +1 @@
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