psyclaw 0.27.23 → 0.28.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +11 -5
- package/agents/recommended/catalog.json +99 -0
- package/dist/apps/panel/index.html +5 -5
- package/dist/src/adapters/pi/extension.js +339 -94
- package/dist/src/adapters/pi/extension.js.map +1 -1
- package/dist/src/adapters/pi/rpc.d.ts +2 -0
- package/dist/src/adapters/pi/rpc.js +9 -2
- package/dist/src/adapters/pi/rpc.js.map +1 -1
- package/dist/src/agents/import.js +44 -32
- package/dist/src/agents/import.js.map +1 -1
- package/dist/src/agents/recommended-personas.d.ts +42 -0
- package/dist/src/agents/recommended-personas.js +135 -0
- package/dist/src/agents/recommended-personas.js.map +1 -0
- package/dist/src/analysis/hooks.d.ts +1 -0
- package/dist/src/analysis/hooks.js +20 -1
- package/dist/src/analysis/hooks.js.map +1 -1
- package/dist/src/ars/bridge.d.ts +20 -0
- package/dist/src/ars/bridge.js +132 -0
- package/dist/src/ars/bridge.js.map +1 -0
- package/dist/src/ars/contracts.d.ts +55 -0
- package/dist/src/ars/contracts.js +2 -0
- package/dist/src/ars/contracts.js.map +1 -0
- package/dist/src/ars/panel-plan.d.ts +4 -0
- package/dist/src/ars/panel-plan.js +11 -0
- package/dist/src/ars/panel-plan.js.map +1 -0
- package/dist/src/ars/pi-panel-executor.d.ts +30 -0
- package/dist/src/ars/pi-panel-executor.js +140 -0
- package/dist/src/ars/pi-panel-executor.js.map +1 -0
- package/dist/src/ars/profile.d.ts +36 -0
- package/dist/src/ars/profile.js +119 -0
- package/dist/src/ars/profile.js.map +1 -0
- package/dist/src/ars/re-review.d.ts +22 -0
- package/dist/src/ars/re-review.js +172 -0
- package/dist/src/ars/re-review.js.map +1 -0
- package/dist/src/branding.d.ts +2 -4
- package/dist/src/branding.js +3 -5
- package/dist/src/branding.js.map +1 -1
- package/dist/src/bundled-tools.d.ts +3 -0
- package/dist/src/bundled-tools.js +21 -0
- package/dist/src/bundled-tools.js.map +1 -0
- package/dist/src/chat.js +6 -5
- package/dist/src/chat.js.map +1 -1
- package/dist/src/cli.js +6 -3
- package/dist/src/cli.js.map +1 -1
- package/dist/src/creation/contracts.d.ts +41 -0
- package/dist/src/creation/contracts.js +2 -0
- package/dist/src/creation/contracts.js.map +1 -0
- package/dist/src/creation/service.d.ts +7 -0
- package/dist/src/creation/service.js +208 -0
- package/dist/src/creation/service.js.map +1 -0
- package/dist/src/index.d.ts +11 -0
- package/dist/src/index.js +11 -0
- package/dist/src/index.js.map +1 -1
- package/dist/src/install/installer.js +32 -10
- package/dist/src/install/installer.js.map +1 -1
- package/dist/src/orchestration/bundled-personas.d.ts +16 -0
- package/dist/src/orchestration/bundled-personas.js +101 -0
- package/dist/src/orchestration/bundled-personas.js.map +1 -0
- package/dist/src/orchestration/effects.d.ts +8 -0
- package/dist/src/orchestration/effects.js +39 -0
- package/dist/src/orchestration/effects.js.map +1 -0
- package/dist/src/orchestration/personas.d.ts +16 -0
- package/dist/src/orchestration/personas.js +64 -0
- package/dist/src/orchestration/personas.js.map +1 -0
- package/dist/src/orchestration/pi-executor.d.ts +9 -4
- package/dist/src/orchestration/pi-executor.js +55 -22
- package/dist/src/orchestration/pi-executor.js.map +1 -1
- package/dist/src/orchestration/research-agents.d.ts +3 -7
- package/dist/src/orchestration/research-agents.js +5 -69
- package/dist/src/orchestration/research-agents.js.map +1 -1
- package/dist/src/panel/server.js +19 -4
- package/dist/src/panel/server.js.map +1 -1
- package/dist/src/project/paths.d.ts +3 -0
- package/dist/src/project/paths.js +7 -0
- package/dist/src/project/paths.js.map +1 -1
- package/dist/src/rules/user-rules.d.ts +8 -0
- package/dist/src/rules/user-rules.js +36 -0
- package/dist/src/rules/user-rules.js.map +1 -0
- package/dist/src/skills/contracts.d.ts +4 -4
- package/dist/src/skills/recommended.js +1 -1
- package/dist/src/skills/registry.js +49 -28
- package/dist/src/skills/registry.js.map +1 -1
- package/dist/src/style/cli-ui.d.ts +14 -0
- package/dist/src/style/cli-ui.js +45 -1
- package/dist/src/style/cli-ui.js.map +1 -1
- package/dist/src/tui/skill-manager.js +1 -1
- package/dist/src/tui/skill-manager.js.map +1 -1
- package/dist/src/updates/update.js +9 -3
- package/dist/src/updates/update.js.map +1 -1
- package/package.json +15 -3
- package/scripts/rebrand-pi.mjs +6 -0
- package/skills/recommended/catalog.json +2 -11
- package/vendor/ars/.claude/CLAUDE.md +371 -0
- package/vendor/ars/.command-invariants.toml +24 -0
- package/vendor/ars/CITATION.cff +35 -0
- package/vendor/ars/LICENSE +417 -0
- package/vendor/ars/MODE_REGISTRY.md +76 -0
- package/vendor/ars/NOTICE.md +26 -0
- package/vendor/ars/POSITIONING.md +99 -0
- package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
- package/vendor/ars/README.md +751 -0
- package/vendor/ars/SECURITY.md +52 -0
- package/vendor/ars/THIRD_PARTY.md +70 -0
- package/vendor/ars/academic-paper/SKILL.md +542 -0
- package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
- package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
- package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
- package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
- package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
- package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
- package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
- package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
- package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
- package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
- package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
- package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
- package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
- package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
- package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
- package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
- package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
- package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
- package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
- package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
- package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
- package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
- package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
- package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
- package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
- package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
- package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
- package/vendor/ars/academic-paper/references/changelog.md +11 -0
- package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
- package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
- package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
- package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
- package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
- package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
- package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
- package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
- package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
- package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
- package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
- package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
- package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
- package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
- package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
- package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
- package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
- package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
- package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
- package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
- package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
- package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
- package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
- package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
- package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
- package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
- package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
- package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
- package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
- package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
- package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
- package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
- package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
- package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
- package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
- package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
- package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
- package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
- package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
- package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
- package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
- package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
- package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
- package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
- package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
- package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
- package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
- package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
- package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
- package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
- package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
- package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
- package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
- package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
- package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
- package/vendor/ars/academic-paper-reviewer/references/reviewer_sprint_prompt_source.md +324 -0
- package/vendor/ars/academic-paper-reviewer/references/sprint_contract_protocol.md +296 -0
- package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
- package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
- package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
- package/vendor/ars/academic-paper-reviewer/templates/peer_review_report_template.md +305 -0
- package/vendor/ars/academic-paper-reviewer/templates/revision_response_template.md +248 -0
- package/vendor/ars/academic-pipeline/SKILL.md +736 -0
- package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
- package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
- package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
- package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
- package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
- package/vendor/ars/academic-pipeline/examples/full_pipeline_example.md +482 -0
- package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
- package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
- package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
- package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
- package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
- package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
- package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
- package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
- package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
- package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
- package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
- package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
- package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
- package/vendor/ars/academic-pipeline/references/pipeline_state_machine.md +405 -0
- package/vendor/ars/academic-pipeline/references/plagiarism_detection_protocol.md +239 -0
- package/vendor/ars/academic-pipeline/references/process_summary_protocol.md +209 -0
- package/vendor/ars/academic-pipeline/references/progress_dashboard_template.md +38 -0
- package/vendor/ars/academic-pipeline/references/reinforcement_content.md +15 -0
- package/vendor/ars/academic-pipeline/references/reproducibility_audit.md +55 -0
- package/vendor/ars/academic-pipeline/references/score_trajectory_protocol.md +78 -0
- package/vendor/ars/academic-pipeline/references/team_collaboration_protocol.md +261 -0
- package/vendor/ars/academic-pipeline/references/two_stage_review_protocol.md +27 -0
- package/vendor/ars/academic-pipeline/templates/pipeline_status_template.md +146 -0
- package/vendor/ars/agents/report_compiler_agent.md +341 -0
- package/vendor/ars/agents/research_architect_agent.md +298 -0
- package/vendor/ars/agents/synthesis_agent.md +356 -0
- package/vendor/ars/commands/ars-3w.md +10 -0
- package/vendor/ars/commands/ars-abstract.md +10 -0
- package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
- package/vendor/ars/commands/ars-citation-check.md +10 -0
- package/vendor/ars/commands/ars-disclosure.md +10 -0
- package/vendor/ars/commands/ars-format-convert.md +10 -0
- package/vendor/ars/commands/ars-full.md +9 -0
- package/vendor/ars/commands/ars-lit-review.md +12 -0
- package/vendor/ars/commands/ars-mark-read.md +18 -0
- package/vendor/ars/commands/ars-outline.md +10 -0
- package/vendor/ars/commands/ars-plan.md +10 -0
- package/vendor/ars/commands/ars-rebuttal-audit.md +12 -0
- package/vendor/ars/commands/ars-reviewer.md +9 -0
- package/vendor/ars/commands/ars-revision-coach.md +9 -0
- package/vendor/ars/commands/ars-revision.md +10 -0
- package/vendor/ars/commands/ars-unmark-read.md +16 -0
- package/vendor/ars/deep-research/SKILL.md +600 -0
- package/vendor/ars/deep-research/agents/bibliography_agent.md +473 -0
- package/vendor/ars/deep-research/agents/devils_advocate_agent.md +192 -0
- package/vendor/ars/deep-research/agents/editor_in_chief_agent.md +167 -0
- package/vendor/ars/deep-research/agents/ethics_review_agent.md +267 -0
- package/vendor/ars/deep-research/agents/meta_analysis_agent.md +325 -0
- package/vendor/ars/deep-research/agents/monitoring_agent.md +209 -0
- package/vendor/ars/deep-research/agents/report_compiler_agent.md +341 -0
- package/vendor/ars/deep-research/agents/research_architect_agent.md +298 -0
- package/vendor/ars/deep-research/agents/research_question_agent.md +216 -0
- package/vendor/ars/deep-research/agents/risk_of_bias_agent.md +231 -0
- package/vendor/ars/deep-research/agents/socratic_mentor_agent.md +764 -0
- package/vendor/ars/deep-research/agents/source_verification_agent.md +219 -0
- package/vendor/ars/deep-research/agents/synthesis_agent.md +356 -0
- package/vendor/ars/deep-research/agents/timeline_extraction_agent.md +99 -0
- package/vendor/ars/deep-research/examples/exploratory_research.md +157 -0
- package/vendor/ars/deep-research/examples/fact_check_mode.md +173 -0
- package/vendor/ars/deep-research/examples/handoff_to_paper.md +318 -0
- package/vendor/ars/deep-research/examples/idea_diversity_coverage_gap_advisory.md +64 -0
- package/vendor/ars/deep-research/examples/policy_analysis.md +161 -0
- package/vendor/ars/deep-research/examples/review_mode.md +253 -0
- package/vendor/ars/deep-research/examples/socratic_guided_research.md +331 -0
- package/vendor/ars/deep-research/examples/systematic_review.md +133 -0
- package/vendor/ars/deep-research/references/apa7_style_guide.md +162 -0
- package/vendor/ars/deep-research/references/argumentation_reasoning_framework.md +68 -0
- package/vendor/ars/deep-research/references/arxiv_api_protocol.md +76 -0
- package/vendor/ars/deep-research/references/changelog.md +22 -0
- package/vendor/ars/deep-research/references/chinese_literature_api_protocol.md +317 -0
- package/vendor/ars/deep-research/references/cross_agent_quality_definitions.md +14 -0
- package/vendor/ars/deep-research/references/crossref_api_protocol.md +84 -0
- package/vendor/ars/deep-research/references/equator_reporting_guidelines.md +482 -0
- package/vendor/ars/deep-research/references/ethics_checklist.md +282 -0
- package/vendor/ars/deep-research/references/failure_paths.md +355 -0
- package/vendor/ars/deep-research/references/interdisciplinary_bridges.md +292 -0
- package/vendor/ars/deep-research/references/irb_decision_tree.md +315 -0
- package/vendor/ars/deep-research/references/literature_monitoring_strategies.md +263 -0
- package/vendor/ars/deep-research/references/logical_fallacies.md +192 -0
- package/vendor/ars/deep-research/references/methodology_patterns.md +462 -0
- package/vendor/ars/deep-research/references/mode_selection_guide.md +331 -0
- package/vendor/ars/deep-research/references/openalex_api_protocol.md +82 -0
- package/vendor/ars/deep-research/references/preregistration_guide.md +324 -0
- package/vendor/ars/deep-research/references/semantic_scholar_api_protocol.md +107 -0
- package/vendor/ars/deep-research/references/socratic_mode_protocol.md +99 -0
- package/vendor/ars/deep-research/references/socratic_questioning_framework.md +232 -0
- package/vendor/ars/deep-research/references/source_quality_hierarchy.md +188 -0
- package/vendor/ars/deep-research/references/systematic_review_protocol.md +95 -0
- package/vendor/ars/deep-research/references/systematic_review_toolkit.md +353 -0
- package/vendor/ars/deep-research/templates/evidence_assessment_template.md +127 -0
- package/vendor/ars/deep-research/templates/literature_matrix_template.md +85 -0
- package/vendor/ars/deep-research/templates/preregistration_template.md +318 -0
- package/vendor/ars/deep-research/templates/prisma_protocol_template.md +248 -0
- package/vendor/ars/deep-research/templates/prisma_report_template.md +415 -0
- package/vendor/ars/deep-research/templates/research_brief_template.md +93 -0
- package/vendor/ars/package.json +24 -0
- package/vendor/ars/pi/README.md +161 -0
- package/vendor/ars/pi/package.json +26 -0
- package/vendor/ars/pi/wrapper.js +193 -0
- package/vendor/ars/pi/wrapper.test.mjs +201 -0
- package/vendor/ars/pyproject.toml +2 -0
- package/vendor/ars/requirements-pdf-content-classifier.txt +5 -0
- package/vendor/ars/scripts/_block_parser.py +396 -0
- package/vendor/ars/scripts/_ci_pytest_manifest.toml +661 -0
- package/vendor/ars/scripts/_claim_audit_constants.py +268 -0
- package/vendor/ars/scripts/_e4_evidence.py +110 -0
- package/vendor/ars/scripts/_eval_threshold_gate.py +73 -0
- package/vendor/ars/scripts/_markdown_lint_util.py +224 -0
- package/vendor/ars/scripts/_next_verified_at_ms.py +176 -0
- package/vendor/ars/scripts/_passport_yaml.py +53 -0
- package/vendor/ars/scripts/_skill_lint.py +254 -0
- package/vendor/ars/scripts/_text_similarity.py +141 -0
- package/vendor/ars/scripts/adapters/README.md +89 -0
- package/vendor/ars/scripts/adapters/_common.py +209 -0
- package/vendor/ars/scripts/adapters/examples/folder_scan/expected_passport.yaml +25 -0
- package/vendor/ars/scripts/adapters/examples/folder_scan/expected_rejection_log.yaml +18 -0
- package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture/Chen2024_AIAssessment.pdf +0 -0
- package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture/Wang_2023_formative_feedback.pdf +0 -0
- package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture/paper1.pdf +0 -0
- package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture//344/270/255/346/226/207/346/252/224/345/220/215_2024.pdf +0 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/expected_passport.yaml +40 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/expected_rejection_log.yaml +13 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/.gitkeep +0 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/.obsidian/app.json +1 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/_templates/tmpl.md +7 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/chen2024ai.md +13 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/invalid.md +1 -0
- package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/wang2023formative.md +10 -0
- package/vendor/ars/scripts/adapters/examples/zotero/expected_passport.yaml +34 -0
- package/vendor/ars/scripts/adapters/examples/zotero/expected_rejection_log.yaml +34 -0
- package/vendor/ars/scripts/adapters/examples/zotero/input_fixture/.gitkeep +0 -0
- package/vendor/ars/scripts/adapters/examples/zotero/input_fixture/export.json +43 -0
- package/vendor/ars/scripts/adapters/folder_scan.py +214 -0
- package/vendor/ars/scripts/adapters/obsidian.py +336 -0
- package/vendor/ars/scripts/adapters/tests/.gitkeep +0 -0
- package/vendor/ars/scripts/adapters/tests/conftest.py +77 -0
- package/vendor/ars/scripts/adapters/tests/test_check_corpus_consumer_protocol.py +632 -0
- package/vendor/ars/scripts/adapters/tests/test_check_literature_corpus_schema.py +631 -0
- package/vendor/ars/scripts/adapters/tests/test_common.py +365 -0
- package/vendor/ars/scripts/adapters/tests/test_conftest.py +96 -0
- package/vendor/ars/scripts/adapters/tests/test_folder_scan.py +260 -0
- package/vendor/ars/scripts/adapters/tests/test_literature_corpus_entry_schema.py +745 -0
- package/vendor/ars/scripts/adapters/tests/test_obsidian.py +357 -0
- package/vendor/ars/scripts/adapters/tests/test_rejection_log_schema.py +271 -0
- package/vendor/ars/scripts/adapters/tests/test_sync_adapter_docs.py +88 -0
- package/vendor/ars/scripts/adapters/tests/test_zotero.py +454 -0
- package/vendor/ars/scripts/adapters/zotero.py +318 -0
- package/vendor/ars/scripts/adjudication_activity.py +1592 -0
- package/vendor/ars/scripts/announce-ars-loaded.sh +144 -0
- package/vendor/ars/scripts/ars_anchorize_draft.py +170 -0
- package/vendor/ars/scripts/ars_apply_revision_patch.py +912 -0
- package/vendor/ars/scripts/ars_cache_invalidate.py +40 -0
- package/vendor/ars/scripts/ars_mark_read.py +521 -0
- package/vendor/ars/scripts/ars_phase_scope_manifest.json +33 -0
- package/vendor/ars/scripts/ars_update_check.sh +215 -0
- package/vendor/ars/scripts/ars_write_scope_guard.py +506 -0
- package/vendor/ars/scripts/arxiv_client.py +222 -0
- package/vendor/ars/scripts/audit_snapshot.py +572 -0
- package/vendor/ars/scripts/bibliographic_integrity_signals.py +800 -0
- package/vendor/ars/scripts/bootstrap_timeline_yaml.py +146 -0
- package/vendor/ars/scripts/build_claim_standing_candidate_ledger.py +1238 -0
- package/vendor/ars/scripts/build_claim_standing_query_plan.py +643 -0
- package/vendor/ars/scripts/build_content_coverage_advisory.py +1205 -0
- package/vendor/ars/scripts/build_cross_document_consistency_advisory.py +2332 -0
- package/vendor/ars/scripts/build_review_pathway_rule_trace.py +830 -0
- package/vendor/ars/scripts/build_submission_packet_manifest.py +2310 -0
- package/vendor/ars/scripts/check_215_field_norm.py +173 -0
- package/vendor/ars/scripts/check_216_surface_form.py +250 -0
- package/vendor/ars/scripts/check_268_nested_commitment_ledger.py +180 -0
- package/vendor/ars/scripts/check_390_revision_patch_discipline.py +296 -0
- package/vendor/ars/scripts/check_392_citation_verification_intake.py +126 -0
- package/vendor/ars/scripts/check_394_submission_policy.py +178 -0
- package/vendor/ars/scripts/check_439_format_profile.py +307 -0
- package/vendor/ars/scripts/check_619_disclosure_closeout.py +237 -0
- package/vendor/ars/scripts/check_630_codex_subscription_transport.py +456 -0
- package/vendor/ars/scripts/check_669_review_pathway_rule_trace.py +662 -0
- package/vendor/ars/scripts/check_670_revision_roadmap_integration.py +518 -0
- package/vendor/ars/scripts/check_673_adjudication_activity.py +684 -0
- package/vendor/ars/scripts/check_684_review_criteria_binding.py +557 -0
- package/vendor/ars/scripts/check_agents_mirror_sync.py +115 -0
- package/vendor/ars/scripts/check_audit_artifact_consistency.py +2313 -0
- package/vendor/ars/scripts/check_benchmark_report.py +79 -0
- package/vendor/ars/scripts/check_bibliographic_integrity_signals.py +831 -0
- package/vendor/ars/scripts/check_calibration_tiers.py +235 -0
- package/vendor/ars/scripts/check_changelog_covers_merges.py +289 -0
- package/vendor/ars/scripts/check_ci_pytest_manifest.py +204 -0
- package/vendor/ars/scripts/check_claim_audit_consistency.py +1664 -0
- package/vendor/ars/scripts/check_claim_standing_candidate_ledger_integration.py +500 -0
- package/vendor/ars/scripts/check_claim_standing_freshness.py +253 -0
- package/vendor/ars/scripts/check_claim_standing_transmissions.py +449 -0
- package/vendor/ars/scripts/check_collaboration_depth_rubric.py +180 -0
- package/vendor/ars/scripts/check_command_frontmatter_name.py +116 -0
- package/vendor/ars/scripts/check_committee_correspondence.py +333 -0
- package/vendor/ars/scripts/check_compliance_report.py +108 -0
- package/vendor/ars/scripts/check_content_coverage_advisory_integration.py +796 -0
- package/vendor/ars/scripts/check_control_availability.py +172 -0
- package/vendor/ars/scripts/check_corpus_consumer_protocol.py +404 -0
- package/vendor/ars/scripts/check_cross_document_consistency_advisory_integration.py +1191 -0
- package/vendor/ars/scripts/check_cross_model_handoff_contract.py +234 -0
- package/vendor/ars/scripts/check_cross_model_verification_sync.py +261 -0
- package/vendor/ars/scripts/check_data_access_level.py +131 -0
- package/vendor/ars/scripts/check_data_flows.py +252 -0
- package/vendor/ars/scripts/check_decision_contract.py +464 -0
- package/vendor/ars/scripts/check_degradation_registry.py +326 -0
- package/vendor/ars/scripts/check_distribution_surface_claims.py +226 -0
- package/vendor/ars/scripts/check_domain_evidence_profile.py +538 -0
- package/vendor/ars/scripts/check_e4_promotion.py +195 -0
- package/vendor/ars/scripts/check_evals_gold_set.py +279 -0
- package/vendor/ars/scripts/check_evidence_row_integration.py +396 -0
- package/vendor/ars/scripts/check_experiment_provenance.py +117 -0
- package/vendor/ars/scripts/check_field_norm_severity.py +144 -0
- package/vendor/ars/scripts/check_firm_rules_sync.py +375 -0
- package/vendor/ars/scripts/check_heldout_measurement_report.py +1179 -0
- package/vendor/ars/scripts/check_human_subjects_output_contract.py +139 -0
- package/vendor/ars/scripts/check_human_subjects_reference_migration.py +844 -0
- package/vendor/ars/scripts/check_indirect_prompt_injection_no_call.py +328 -0
- package/vendor/ars/scripts/check_instruction_data_boundary.py +236 -0
- package/vendor/ars/scripts/check_judge_prompt_version.py +125 -0
- package/vendor/ars/scripts/check_literature_corpus_schema.py +402 -0
- package/vendor/ars/scripts/check_model_tiering.py +223 -0
- package/vendor/ars/scripts/check_panel_synthesis.py +1331 -0
- package/vendor/ars/scripts/check_passport_reset_contract.py +214 -0
- package/vendor/ars/scripts/check_pattern_eval_manifest.py +422 -0
- package/vendor/ars/scripts/check_persuasion_invariance_fixtures.py +637 -0
- package/vendor/ars/scripts/check_phase_conformance.py +2180 -0
- package/vendor/ars/scripts/check_pipeline_boundary_semantics.py +600 -0
- package/vendor/ars/scripts/check_pipeline_integrity.py +340 -0
- package/vendor/ars/scripts/check_policy_anchor_protocol.py +159 -0
- package/vendor/ars/scripts/check_policy_anchor_table.py +286 -0
- package/vendor/ars/scripts/check_preprint_venues_consistency.py +123 -0
- package/vendor/ars/scripts/check_prisma_trAIce_freshness.py +84 -0
- package/vendor/ars/scripts/check_promotion_bakeoff_preregistration.py +1303 -0
- package/vendor/ars/scripts/check_ranking_lift.py +323 -0
- package/vendor/ars/scripts/check_re_review_synthesis.py +2719 -0
- package/vendor/ars/scripts/check_receipt_enum_sync.py +203 -0
- package/vendor/ars/scripts/check_repro_lock.py +85 -0
- package/vendor/ars/scripts/check_review_pathway_output.py +276 -0
- package/vendor/ars/scripts/check_reviewer_data_fences.py +224 -0
- package/vendor/ars/scripts/check_reviewer_finding_contract.py +783 -0
- package/vendor/ars/scripts/check_reviewer_role_label.py +447 -0
- package/vendor/ars/scripts/check_reviewer_scoring_honesty.py +292 -0
- package/vendor/ars/scripts/check_reviewer_sprint_prompt_sync.py +409 -0
- package/vendor/ars/scripts/check_revision_claim_drift_suite_v2.py +1622 -0
- package/vendor/ars/scripts/check_revision_token_conservation.py +263 -0
- package/vendor/ars/scripts/check_risk_register.py +280 -0
- package/vendor/ars/scripts/check_role_scoped_contract.py +702 -0
- package/vendor/ars/scripts/check_rq_framing_patterns.py +184 -0
- package/vendor/ars/scripts/check_rubric_weight_consistency.py +32 -0
- package/vendor/ars/scripts/check_seeded_defect_fixtures.py +425 -0
- package/vendor/ars/scripts/check_setup_cross_model_parity.py +139 -0
- package/vendor/ars/scripts/check_spec_consistency.py +1249 -0
- package/vendor/ars/scripts/check_sprint_contract.py +371 -0
- package/vendor/ars/scripts/check_stage_capability_matrix.py +784 -0
- package/vendor/ars/scripts/check_submission_packet_manifest_integration.py +358 -0
- package/vendor/ars/scripts/check_surface_form_parity.py +445 -0
- package/vendor/ars/scripts/check_task_type.py +22 -0
- package/vendor/ars/scripts/check_tools_allowlist.py +538 -0
- package/vendor/ars/scripts/check_tortured_phrase_screening_integration.py +1974 -0
- package/vendor/ars/scripts/check_v3_10_134_write_scope.py +286 -0
- package/vendor/ars/scripts/check_v3_10_policy.py +656 -0
- package/vendor/ars/scripts/check_v3_6_6_ab_manifest.py +364 -0
- package/vendor/ars/scripts/check_v3_6_7_pattern_protection.py +1366 -0
- package/vendor/ars/scripts/check_v3_6_8_audit_scope_block.py +464 -0
- package/vendor/ars/scripts/check_v3_6_8_cite_provenance_pipeline.py +231 -0
- package/vendor/ars/scripts/check_v3_6_8_frontmatter_trust_schema.py +248 -0
- package/vendor/ars/scripts/check_v3_6_8_mark_read_commands.py +79 -0
- package/vendor/ars/scripts/check_v3_6_8_pattern_protection.py +941 -0
- package/vendor/ars/scripts/check_v3_7_3_three_layer_citation.py +318 -0
- package/vendor/ars/scripts/check_v3_8_annotation_literal_sync.py +228 -0
- package/vendor/ars/scripts/check_v3_9_0_triangulation.py +366 -0
- package/vendor/ars/scripts/check_v3_9_2_phase_boundary.py +270 -0
- package/vendor/ars/scripts/check_v3_9_4_temporal_verification.py +139 -0
- package/vendor/ars/scripts/check_venue_disclosure_policies.py +63 -0
- package/vendor/ars/scripts/check_version_consistency.py +826 -0
- package/vendor/ars/scripts/check_workflow_classification.py +223 -0
- package/vendor/ars/scripts/chinese_literature_client.py +1938 -0
- package/vendor/ars/scripts/citation_verification_summary.py +85 -0
- package/vendor/ars/scripts/claim_audit_calibration.py +517 -0
- package/vendor/ars/scripts/claim_audit_finalizer.py +456 -0
- package/vendor/ars/scripts/claim_audit_pipeline.py +1594 -0
- package/vendor/ars/scripts/claim_registry_coverage.py +493 -0
- package/vendor/ars/scripts/claim_standing_discovery.py +784 -0
- package/vendor/ars/scripts/claim_standing_stance_runner.py +758 -0
- package/vendor/ars/scripts/claim_standing_stance_scorer.py +239 -0
- package/vendor/ars/scripts/claim_strength_drift_disposition.py +666 -0
- package/vendor/ars/scripts/contamination_signals.py +689 -0
- package/vendor/ars/scripts/corpus_consumer_manifest.json +19 -0
- package/vendor/ars/scripts/cross_model_codex_transport.py +1374 -0
- package/vendor/ars/scripts/cross_model_codex_verify.sh +6 -0
- package/vendor/ars/scripts/cross_model_handoff.py +359 -0
- package/vendor/ars/scripts/cross_model_smoke_test.sh +183 -0
- package/vendor/ars/scripts/cross_model_smoke_test_codex.sh +35 -0
- package/vendor/ars/scripts/cross_model_verification/gemini_is_grounded.jq +45 -0
- package/vendor/ars/scripts/cross_model_verification/gemini_sources.jq +45 -0
- package/vendor/ars/scripts/cross_model_verification/normalize_compat_verdict.py +57 -0
- package/vendor/ars/scripts/cross_model_verification/openai_has_completed_web_search.jq +15 -0
- package/vendor/ars/scripts/cross_model_verification/openai_sources.jq +17 -0
- package/vendor/ars/scripts/cross_model_verification/openai_text.jq +11 -0
- package/vendor/ars/scripts/crossref_client.py +225 -0
- package/vendor/ars/scripts/dispatch_e4_panel.py +2731 -0
- package/vendor/ars/scripts/evidence_rows.py +2043 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3.json +32 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3_input.json +27 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3_prime.json +32 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3_prime_input.json +27 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/compliance_override.json +50 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/compliance_override_action.json +14 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/compliance_pass.json +44 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/explicit_user_request_log.json +26 -0
- package/vendor/ars/scripts/fixtures/adjudication_activity/mandatory_checkpoint_log.json +116 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/README.md +56 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.audit_artifact_entry.json +24 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.jsonl +4 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.meta.json +43 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.verdict.yaml +19 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a7_orphan_completion/2026-04-30T15-22-04Z-d8f3.jsonl +3 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.audit_artifact_entry.json +26 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.jsonl +4 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.meta.json +43 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.verdict.yaml +19 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.audit_artifact_entry.json +24 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.jsonl +4 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.meta.json +43 -0
- package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.verdict.yaml +12 -0
- package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/retraction.json +46 -0
- package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/retraction_check_attestation.json +44 -0
- package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/tortured_phrase.json +44 -0
- package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/tortured_phrase_v1_2_abstract_missing.json +107 -0
- package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/tortured_phrase_v1_2_detected.json +124 -0
- package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/expected_outcomes.json +77 -0
- package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/manifest.yaml +37 -0
- package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/tuples/001-valid-doi-test.json +20 -0
- package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/tuples/002-valid-arxiv-test.json +19 -0
- package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/tuples/003-fabricated-test.json +20 -0
- package/vendor/ars/scripts/fixtures/claim_audit_calibration/gold_set.json +344 -0
- package/vendor/ars/scripts/fixtures/claim_standing_candidate_ledger/query_plan.json +108 -0
- package/vendor/ars/scripts/fixtures/claim_standing_candidate_ledger/retrieval_input.json +179 -0
- package/vendor/ars/scripts/fixtures/committee_correspondence/16fd83f6aec7/concern_tracker.json +129 -0
- package/vendor/ars/scripts/fixtures/committee_correspondence/16fd83f6aec7/response_skeleton.md +19 -0
- package/vendor/ars/scripts/fixtures/committee_correspondence/16fd83f6aec7/source_letter.txt +9 -0
- package/vendor/ars/scripts/fixtures/content_coverage_advisory/base_draft.json +48 -0
- package/vendor/ars/scripts/fixtures/content_coverage_advisory/base_inventory.json +38 -0
- package/vendor/ars/scripts/fixtures/content_coverage_advisory/packet/consent.txt +1 -0
- package/vendor/ars/scripts/fixtures/content_coverage_advisory/session_sources.json +3 -0
- package/vendor/ars/scripts/fixtures/cross_document_consistency/README.md +6 -0
- package/vendor/ars/scripts/fixtures/cross_document_consistency/accepted_draft.md +35 -0
- package/vendor/ars/scripts/fixtures/cross_document_consistency/cases.json +75 -0
- package/vendor/ars/scripts/fixtures/cross_document_consistency/preregistration.md +5 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/forbidden_event.jsonl +4 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/grounded_verified.jsonl +3 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/malformed.jsonl +3 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/missing_search.jsonl +2 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/multiple_finals.jsonl +4 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/not_found.jsonl +3 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/unbound_source.jsonl +3 -0
- package/vendor/ars/scripts/fixtures/cross_model_codex_transport/wrong_search_shape.jsonl +3 -0
- package/vendor/ars/scripts/fixtures/evidence_rows/phase_e_inputs.json +114 -0
- package/vendor/ars/scripts/fixtures/evidence_rows/session_sources.json +5 -0
- package/vendor/ars/scripts/fixtures/human_subjects_authority/cross-border-us-tw-gdpr.json +71 -0
- package/vendor/ars/scripts/fixtures/human_subjects_authority/gdpr-member-state-unresolved.json +62 -0
- package/vendor/ars/scripts/fixtures/human_subjects_authority/missing-data-axis.json +45 -0
- package/vendor/ars/scripts/fixtures/human_subjects_authority/no-profile.json +33 -0
- package/vendor/ars/scripts/fixtures/human_subjects_authority/tw-gdpr-two-axis.json +74 -0
- package/vendor/ars/scripts/fixtures/human_subjects_authority/us-gdpr-two-axis.json +74 -0
- package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/lint-near-misses.json +72 -0
- package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/no-profile-request.json +18 -0
- package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/tw-candidates-request.json +63 -0
- package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/us-candidates-request.json +77 -0
- package/vendor/ars/scripts/fixtures/review_target_context/exact-declaration.json +24 -0
- package/vendor/ars/scripts/fixtures/review_target_context/field-general-declaration.json +24 -0
- package/vendor/ars/scripts/fixtures/review_target_context/msr-2027-technical-full-declaration.json +24 -0
- package/vendor/ars/scripts/fixtures/review_target_context/synthetic-registry.json +92 -0
- package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/README.md +21 -0
- package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_attested_only.json +55 -0
- package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_machine_supported.json +49 -0
- package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_not_isolated.json +56 -0
- package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_unknown.json +49 -0
- package/vendor/ars/scripts/fixtures/submission_package/clean/paper.md +16 -0
- package/vendor/ars/scripts/fixtures/submission_package/clean/references.bib +13 -0
- package/vendor/ars/scripts/fixtures/submission_package/fallback_authoryear/paper.md +11 -0
- package/vendor/ars/scripts/fixtures/submission_package/fallback_authoryear/references.bib +13 -0
- package/vendor/ars/scripts/fixtures/submission_package/fallback_latex/paper.tex +9 -0
- package/vendor/ars/scripts/fixtures/submission_package/fallback_latex/references.bib +13 -0
- package/vendor/ars/scripts/fixtures/submission_package/marker_no_join/paper.md +7 -0
- package/vendor/ars/scripts/fixtures/submission_package/orphan_intext/paper.md +8 -0
- package/vendor/ars/scripts/fixtures/submission_package/orphan_intext/references.bib +6 -0
- package/vendor/ars/scripts/fixtures/submission_package/passports/corpus_only.yaml +9 -0
- package/vendor/ars/scripts/fixtures/submission_package/passports/summary_join.yaml +16 -0
- package/vendor/ars/scripts/fixtures/submission_package/profiles/full.yaml +15 -0
- package/vendor/ars/scripts/fixtures/submission_package/profiles/tight.yaml +15 -0
- package/vendor/ars/scripts/fixtures/submission_package/summary_join/paper.md +7 -0
- package/vendor/ars/scripts/fixtures/submission_package/uncited_reference/paper.md +9 -0
- package/vendor/ars/scripts/fixtures/submission_package/uncited_reference/references.bib +13 -0
- package/vendor/ars/scripts/fixtures/submission_package/venue_clean/paper.md +26 -0
- package/vendor/ars/scripts/fixtures/submission_package/venue_clean/references.bib +13 -0
- package/vendor/ars/scripts/fixtures/submission_package/venue_violations/paper.md +20 -0
- package/vendor/ars/scripts/fixtures/submission_package/venue_violations/references.bib +13 -0
- package/vendor/ars/scripts/fixtures/submission_packet_manifest/base_inventory.json +101 -0
- package/vendor/ars/scripts/fixtures/submission_packet_manifest/packet/consent-materials.txt +3 -0
- package/vendor/ars/scripts/fixtures/submission_packet_manifest/packet/training-certificate.txt +2 -0
- package/vendor/ars/scripts/fixtures/submission_packet_manifest/packet/tw-consent-materials.txt +3 -0
- package/vendor/ars/scripts/fixtures/tortured_phrase_screening/corpus_input.yaml +30 -0
- package/vendor/ars/scripts/fixtures/tortured_phrase_screening/own_draft.md +36 -0
- package/vendor/ars/scripts/fixtures/tortured_phrase_screening/own_draft.tex +21 -0
- package/vendor/ars/scripts/fixtures/tortured_phrase_screening/seed_expectations.json +218 -0
- package/vendor/ars/scripts/fixtures/tortured_phrase_screening/snapshot.json +164 -0
- package/vendor/ars/scripts/fixtures/tortured_phrase_screening/snapshot_manifest.json +29 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/README.md +55 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/arxiv/empty_feed.xml +10 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/arxiv/error_5xx.html +7 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/arxiv/id_hit.xml +26 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/README.md +69 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/cnki_landing_page.html +13 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/error_5xx.html +2 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coordinate_ambiguous.json +16 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coordinate_hit.json +16 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coordinate_zero.json +14 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coverage_hit.json +15 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coverage_zero.json +13 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_hit.json +43 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_issn_mismatch.json +31 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_no_doi.json +31 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_unknown_ra.json +34 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_year_mismatch.json +31 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/handle_absent.json +4 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/handle_exists.json +16 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/handle_internal_error.json +4 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/istic_csl_hit.json +25 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/istic_csl_other_title.json +18 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_cnki.json +6 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_crossref.json +6 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_istic.json +6 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_unknown_prefix.json +6 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/crossref/doi_hit.json +24 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/crossref/error_5xx.html +7 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/crossref/title_search_miss.json +15 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/openalex/doi_hit.json +29 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/openalex/error_5xx.json +4 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/openalex/title_search_miss.json +11 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/semantic_scholar/doi_hit.json +14 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/semantic_scholar/error_5xx.json +3 -0
- package/vendor/ars/scripts/fixtures/transport_bodies/semantic_scholar/title_search_miss.json +5 -0
- package/vendor/ars/scripts/human_read_attestation_resolver.py +467 -0
- package/vendor/ars/scripts/ideation_diversity_assignment_gate.py +430 -0
- package/vendor/ars/scripts/inquiry_branch_ledger.py +2540 -0
- package/vendor/ars/scripts/legacy/ars_apply_revision_patch_v1_0.py +715 -0
- package/vendor/ars/scripts/legacy/check_re_review_synthesis_v1_0.py +2215 -0
- package/vendor/ars/scripts/migrate_literature_corpus_to_v3_10.py +223 -0
- package/vendor/ars/scripts/migrate_literature_corpus_to_v3_7_3.py +277 -0
- package/vendor/ars/scripts/migrate_literature_corpus_to_v3_9_0.py +304 -0
- package/vendor/ars/scripts/model_tiering_manifest.json +46 -0
- package/vendor/ars/scripts/openalex_client.py +232 -0
- package/vendor/ars/scripts/parse_audit_verdict.py +802 -0
- package/vendor/ars/scripts/pdf_content_classifier_worker.py +176 -0
- package/vendor/ars/scripts/pdf_read_preflight.py +1455 -0
- package/vendor/ars/scripts/policy_anchor_disclosure_referee.py +354 -0
- package/vendor/ars/scripts/recompute_receipts.py +1414 -0
- package/vendor/ars/scripts/render_claim_standing_view.py +374 -0
- package/vendor/ars/scripts/render_eval_comment.py +130 -0
- package/vendor/ars/scripts/render_harness_retirement_issue.py +167 -0
- package/vendor/ars/scripts/repro_lock_validation.py +90 -0
- package/vendor/ars/scripts/research_workflow_profile.py +1079 -0
- package/vendor/ars/scripts/resolve_human_subjects_authority.py +1158 -0
- package/vendor/ars/scripts/resolve_review_target_context.py +683 -0
- package/vendor/ars/scripts/resume_e4_record.py +509 -0
- package/vendor/ars/scripts/retraction_status.py +484 -0
- package/vendor/ars/scripts/review_criteria_binding.py +889 -0
- package/vendor/ars/scripts/review_panel_provenance.py +744 -0
- package/vendor/ars/scripts/revision_roadmap.py +1967 -0
- package/vendor/ars/scripts/run_ci_pytest_manifest.py +116 -0
- package/vendor/ars/scripts/run_codex_audit.sh +1191 -0
- package/vendor/ars/scripts/run_evals.py +513 -0
- package/vendor/ars/scripts/run_ideation_diversity_no_call.py +3505 -0
- package/vendor/ars/scripts/run_indirect_prompt_injection_no_call.py +3330 -0
- package/vendor/ars/scripts/run_indirect_prompt_injection_probe.py +399 -0
- package/vendor/ars/scripts/run_review_criteria_constructive_value.py +1895 -0
- package/vendor/ars/scripts/run_role_topology_utility_dry_run.py +606 -0
- package/vendor/ars/scripts/score_review_criteria_constructive_value.py +617 -0
- package/vendor/ars/scripts/semantic_scholar_client.py +291 -0
- package/vendor/ars/scripts/slr_lineage.py +59 -0
- package/vendor/ars/scripts/sync_adapter_docs.py +118 -0
- package/vendor/ars/scripts/temporal_integrity_audit.py +840 -0
- package/vendor/ars/scripts/test_431_exact_or_bust.py +253 -0
- package/vendor/ars/scripts/test__eval_threshold_gate.py +125 -0
- package/vendor/ars/scripts/test__markdown_lint_util.py +129 -0
- package/vendor/ars/scripts/test__next_verified_at_ms.py +256 -0
- package/vendor/ars/scripts/test_adjacent_framing_probe_lint.py +171 -0
- package/vendor/ars/scripts/test_adjudication_activity.py +1515 -0
- package/vendor/ars/scripts/test_ars_anchorize_draft.py +178 -0
- package/vendor/ars/scripts/test_ars_apply_revision_patch.py +1335 -0
- package/vendor/ars/scripts/test_ars_cache_invalidate.py +51 -0
- package/vendor/ars/scripts/test_ars_mark_read.py +910 -0
- package/vendor/ars/scripts/test_ars_update_check.py +816 -0
- package/vendor/ars/scripts/test_ars_write_scope_guard.py +790 -0
- package/vendor/ars/scripts/test_arxiv_client.py +374 -0
- package/vendor/ars/scripts/test_audit_schemas.py +560 -0
- package/vendor/ars/scripts/test_audit_snapshot_render_section_0.py +105 -0
- package/vendor/ars/scripts/test_block_parser.py +259 -0
- package/vendor/ars/scripts/test_bootstrap_timeline_yaml.py +148 -0
- package/vendor/ars/scripts/test_build_claim_standing_candidate_ledger.py +1203 -0
- package/vendor/ars/scripts/test_build_claim_standing_query_plan.py +791 -0
- package/vendor/ars/scripts/test_build_submission_packet_manifest.py +2644 -0
- package/vendor/ars/scripts/test_check_215_field_norm.py +238 -0
- package/vendor/ars/scripts/test_check_216_surface_form.py +341 -0
- package/vendor/ars/scripts/test_check_268_nested_commitment_ledger.py +194 -0
- package/vendor/ars/scripts/test_check_390_revision_patch_discipline.py +279 -0
- package/vendor/ars/scripts/test_check_392_citation_verification_intake.py +144 -0
- package/vendor/ars/scripts/test_check_394_submission_policy.py +200 -0
- package/vendor/ars/scripts/test_check_439_format_profile.py +252 -0
- package/vendor/ars/scripts/test_check_619_disclosure_closeout.py +158 -0
- package/vendor/ars/scripts/test_check_630_codex_subscription_transport.py +245 -0
- package/vendor/ars/scripts/test_check_669_review_pathway_rule_trace.py +304 -0
- package/vendor/ars/scripts/test_check_670_revision_roadmap_integration.py +260 -0
- package/vendor/ars/scripts/test_check_673_adjudication_activity.py +367 -0
- package/vendor/ars/scripts/test_check_684_review_criteria_binding.py +274 -0
- package/vendor/ars/scripts/test_check_agents_mirror_sync.py +137 -0
- package/vendor/ars/scripts/test_check_audit_artifact_consistency.py +2133 -0
- package/vendor/ars/scripts/test_check_benchmark_report.py +117 -0
- package/vendor/ars/scripts/test_check_bibliographic_integrity_signals.py +609 -0
- package/vendor/ars/scripts/test_check_calibration_tiers.py +376 -0
- package/vendor/ars/scripts/test_check_changelog_covers_merges.py +509 -0
- package/vendor/ars/scripts/test_check_ci_pytest_manifest.py +425 -0
- package/vendor/ars/scripts/test_check_claim_standing_candidate_ledger_integration.py +256 -0
- package/vendor/ars/scripts/test_check_claim_standing_freshness.py +277 -0
- package/vendor/ars/scripts/test_check_collaboration_depth_rubric.py +239 -0
- package/vendor/ars/scripts/test_check_command_frontmatter_name.py +178 -0
- package/vendor/ars/scripts/test_check_committee_correspondence.py +298 -0
- package/vendor/ars/scripts/test_check_compliance_report.py +381 -0
- package/vendor/ars/scripts/test_check_content_coverage_advisory_integration.py +308 -0
- package/vendor/ars/scripts/test_check_control_availability.py +361 -0
- package/vendor/ars/scripts/test_check_cross_document_consistency_advisory_integration.py +698 -0
- package/vendor/ars/scripts/test_check_cross_model_handoff_contract.py +301 -0
- package/vendor/ars/scripts/test_check_cross_model_verification_sync.py +203 -0
- package/vendor/ars/scripts/test_check_data_access_level.py +227 -0
- package/vendor/ars/scripts/test_check_data_flows.py +382 -0
- package/vendor/ars/scripts/test_check_decision_contract.py +387 -0
- package/vendor/ars/scripts/test_check_degradation_registry.py +270 -0
- package/vendor/ars/scripts/test_check_distribution_surface_claims.py +225 -0
- package/vendor/ars/scripts/test_check_domain_evidence_profile.py +439 -0
- package/vendor/ars/scripts/test_check_e4_promotion.py +163 -0
- package/vendor/ars/scripts/test_check_evals_gold_set.py +312 -0
- package/vendor/ars/scripts/test_check_evidence_row_integration.py +187 -0
- package/vendor/ars/scripts/test_check_field_norm_severity.py +173 -0
- package/vendor/ars/scripts/test_check_firm_rules_sync.py +342 -0
- package/vendor/ars/scripts/test_check_heldout_measurement_report.py +1508 -0
- package/vendor/ars/scripts/test_check_human_subjects_output_contract.py +129 -0
- package/vendor/ars/scripts/test_check_human_subjects_reference_migration.py +756 -0
- package/vendor/ars/scripts/test_check_instruction_data_boundary.py +204 -0
- package/vendor/ars/scripts/test_check_judge_prompt_version.py +90 -0
- package/vendor/ars/scripts/test_check_model_tiering.py +236 -0
- package/vendor/ars/scripts/test_check_panel_synthesis.py +1658 -0
- package/vendor/ars/scripts/test_check_passport_reset_contract.py +249 -0
- package/vendor/ars/scripts/test_check_pattern_eval_manifest.py +381 -0
- package/vendor/ars/scripts/test_check_persuasion_invariance_fixtures.py +591 -0
- package/vendor/ars/scripts/test_check_phase_conformance.py +4366 -0
- package/vendor/ars/scripts/test_check_pipeline_boundary_semantics.py +931 -0
- package/vendor/ars/scripts/test_check_pipeline_integrity.py +243 -0
- package/vendor/ars/scripts/test_check_policy_anchor_protocol.py +236 -0
- package/vendor/ars/scripts/test_check_policy_anchor_table.py +295 -0
- package/vendor/ars/scripts/test_check_prisma_trAIce_freshness.py +68 -0
- package/vendor/ars/scripts/test_check_promotion_bakeoff_preregistration.py +799 -0
- package/vendor/ars/scripts/test_check_ranking_lift.py +377 -0
- package/vendor/ars/scripts/test_check_re_review_synthesis.py +3398 -0
- package/vendor/ars/scripts/test_check_receipt_enum_sync.py +176 -0
- package/vendor/ars/scripts/test_check_repro_lock.py +107 -0
- package/vendor/ars/scripts/test_check_reviewer_data_fences.py +334 -0
- package/vendor/ars/scripts/test_check_reviewer_finding_contract.py +1107 -0
- package/vendor/ars/scripts/test_check_reviewer_role_label.py +491 -0
- package/vendor/ars/scripts/test_check_reviewer_scoring_honesty.py +222 -0
- package/vendor/ars/scripts/test_check_reviewer_sprint_prompt_sync.py +373 -0
- package/vendor/ars/scripts/test_check_revision_claim_drift_suite_v2.py +1925 -0
- package/vendor/ars/scripts/test_check_revision_token_conservation.py +398 -0
- package/vendor/ars/scripts/test_check_risk_register.py +336 -0
- package/vendor/ars/scripts/test_check_role_scoped_contract.py +1104 -0
- package/vendor/ars/scripts/test_check_rq_framing_patterns.py +110 -0
- package/vendor/ars/scripts/test_check_rubric_weight_consistency.py +32 -0
- package/vendor/ars/scripts/test_check_seeded_defect_fixtures.py +392 -0
- package/vendor/ars/scripts/test_check_setup_cross_model_parity.py +121 -0
- package/vendor/ars/scripts/test_check_spec_consistency.py +1081 -0
- package/vendor/ars/scripts/test_check_sprint_contract.py +458 -0
- package/vendor/ars/scripts/test_check_stage_capability_matrix.py +698 -0
- package/vendor/ars/scripts/test_check_submission_packet_manifest_integration.py +177 -0
- package/vendor/ars/scripts/test_check_surface_form_parity.py +417 -0
- package/vendor/ars/scripts/test_check_task_type.py +116 -0
- package/vendor/ars/scripts/test_check_tools_allowlist.py +835 -0
- package/vendor/ars/scripts/test_check_tortured_phrase_screening_integration.py +1306 -0
- package/vendor/ars/scripts/test_check_v3_10_134_write_scope.py +251 -0
- package/vendor/ars/scripts/test_check_v3_10_policy.py +547 -0
- package/vendor/ars/scripts/test_check_v3_6_7_pattern_protection.py +960 -0
- package/vendor/ars/scripts/test_check_v3_6_8_audit_scope_block.py +1000 -0
- package/vendor/ars/scripts/test_check_v3_6_8_cite_provenance_pipeline.py +454 -0
- package/vendor/ars/scripts/test_check_v3_6_8_frontmatter_trust_schema.py +581 -0
- package/vendor/ars/scripts/test_check_v3_6_8_mark_read_commands.py +120 -0
- package/vendor/ars/scripts/test_check_v3_6_8_pattern_protection.py +1138 -0
- package/vendor/ars/scripts/test_check_v3_7_3_three_layer_citation.py +566 -0
- package/vendor/ars/scripts/test_check_v3_8_annotation_literal_sync.py +262 -0
- package/vendor/ars/scripts/test_check_v3_9_0_triangulation.py +321 -0
- package/vendor/ars/scripts/test_check_v3_9_2_phase_boundary.py +190 -0
- package/vendor/ars/scripts/test_check_v3_9_4_temporal_verification.py +471 -0
- package/vendor/ars/scripts/test_check_version_consistency.py +1462 -0
- package/vendor/ars/scripts/test_check_workflow_classification.py +225 -0
- package/vendor/ars/scripts/test_chinese_literature_client.py +1889 -0
- package/vendor/ars/scripts/test_citation_existence_policy.py +480 -0
- package/vendor/ars/scripts/test_citation_verification_summary.py +342 -0
- package/vendor/ars/scripts/test_claim_audit_calibration.py +882 -0
- package/vendor/ars/scripts/test_claim_audit_finalizer.py +979 -0
- package/vendor/ars/scripts/test_claim_audit_pipeline.py +2398 -0
- package/vendor/ars/scripts/test_claim_audit_schema.py +1778 -0
- package/vendor/ars/scripts/test_claim_intent_manifest.py +666 -0
- package/vendor/ars/scripts/test_claim_registry_coverage.py +246 -0
- package/vendor/ars/scripts/test_claim_standing_discovery.py +579 -0
- package/vendor/ars/scripts/test_claim_standing_pipeline_wiring.py +290 -0
- package/vendor/ars/scripts/test_claim_standing_stance_assets.py +399 -0
- package/vendor/ars/scripts/test_claim_standing_stance_contracts.py +383 -0
- package/vendor/ars/scripts/test_claim_standing_stance_runner.py +349 -0
- package/vendor/ars/scripts/test_claim_standing_transmissions.py +605 -0
- package/vendor/ars/scripts/test_claim_strength_drift_disposition.py +517 -0
- package/vendor/ars/scripts/test_claim_verification_coverage_contract.py +104 -0
- package/vendor/ars/scripts/test_contamination_signals.py +1086 -0
- package/vendor/ars/scripts/test_content_coverage_advisory.py +1767 -0
- package/vendor/ars/scripts/test_cross_document_consistency_advisory.py +1270 -0
- package/vendor/ars/scripts/test_cross_model_codex_transport.py +1152 -0
- package/vendor/ars/scripts/test_cross_model_handoff.py +571 -0
- package/vendor/ars/scripts/test_cross_model_verification_guards.py +792 -0
- package/vendor/ars/scripts/test_crossref_client.py +393 -0
- package/vendor/ars/scripts/test_dispatch_e4_panel.py +4235 -0
- package/vendor/ars/scripts/test_e2e_claim_audit.py +540 -0
- package/vendor/ars/scripts/test_eval_harness_workflow.py +140 -0
- package/vendor/ars/scripts/test_evals_citation_extraction.py +150 -0
- package/vendor/ars/scripts/test_evals_lift_report_schema.py +108 -0
- package/vendor/ars/scripts/test_evidence_rows.py +2593 -0
- package/vendor/ars/scripts/test_experiment_provenance.py +915 -0
- package/vendor/ars/scripts/test_human_read_attestation_resolver.py +477 -0
- package/vendor/ars/scripts/test_ideation_diversity_assignment_gate.py +615 -0
- package/vendor/ars/scripts/test_indirect_prompt_injection_behavior_probe.py +250 -0
- package/vendor/ars/scripts/test_inquiry_branch_ledger.py +2296 -0
- package/vendor/ars/scripts/test_migrate_literature_corpus_to_v3_10.py +248 -0
- package/vendor/ars/scripts/test_migrate_literature_corpus_to_v3_7_3.py +545 -0
- package/vendor/ars/scripts/test_migrate_literature_corpus_to_v3_9_0.py +497 -0
- package/vendor/ars/scripts/test_normalize_compat_verdict.py +149 -0
- package/vendor/ars/scripts/test_openalex_client.py +490 -0
- package/vendor/ars/scripts/test_passport_yaml.py +104 -0
- package/vendor/ars/scripts/test_pattern_eval_runtime.py +1295 -0
- package/vendor/ars/scripts/test_pdf_read_preflight.py +1943 -0
- package/vendor/ars/scripts/test_policy_anchor_disclosure.py +666 -0
- package/vendor/ars/scripts/test_reading_probe_lint.py +218 -0
- package/vendor/ars/scripts/test_recompute_receipts.py +778 -0
- package/vendor/ars/scripts/test_render_claim_standing_view.py +192 -0
- package/vendor/ars/scripts/test_render_eval_comment.py +162 -0
- package/vendor/ars/scripts/test_render_harness_retirement_issue.py +110 -0
- package/vendor/ars/scripts/test_repro_lock_validation_drift.py +100 -0
- package/vendor/ars/scripts/test_research_workflow_profile.py +734 -0
- package/vendor/ars/scripts/test_resolve_human_subjects_authority.py +1219 -0
- package/vendor/ars/scripts/test_resolve_review_target_context.py +703 -0
- package/vendor/ars/scripts/test_resume_e4_record.py +315 -0
- package/vendor/ars/scripts/test_retraction_status.py +456 -0
- package/vendor/ars/scripts/test_review_criteria_binding.py +629 -0
- package/vendor/ars/scripts/test_review_panel_provenance.py +565 -0
- package/vendor/ars/scripts/test_review_pathway_rule_trace.py +821 -0
- package/vendor/ars/scripts/test_revision_roadmap.py +1255 -0
- package/vendor/ars/scripts/test_run_ci_pytest_manifest.py +186 -0
- package/vendor/ars/scripts/test_run_codex_audit_e2e.py +369 -0
- package/vendor/ars/scripts/test_run_evals.py +430 -0
- package/vendor/ars/scripts/test_run_guard_launcher.py +500 -0
- package/vendor/ars/scripts/test_run_ideation_diversity_no_call.py +1833 -0
- package/vendor/ars/scripts/test_run_indirect_prompt_injection_no_call.py +1889 -0
- package/vendor/ars/scripts/test_run_review_criteria_constructive_value.py +586 -0
- package/vendor/ars/scripts/test_run_role_topology_utility_dry_run.py +428 -0
- package/vendor/ars/scripts/test_score_review_criteria_constructive_value.py +340 -0
- package/vendor/ars/scripts/test_semantic_scholar_client.py +554 -0
- package/vendor/ars/scripts/test_slr_lineage_emission.py +230 -0
- package/vendor/ars/scripts/test_socratic_rq_non_generation_contract.py +173 -0
- package/vendor/ars/scripts/test_temporal_integrity_audit.py +438 -0
- package/vendor/ars/scripts/test_text_similarity.py +95 -0
- package/vendor/ars/scripts/test_title_fuzzy_false_positive.py +111 -0
- package/vendor/ars/scripts/test_tortured_phrase_screening.py +2959 -0
- package/vendor/ars/scripts/test_transport_fixture_citation_gate.py +338 -0
- package/vendor/ars/scripts/test_uncited_assertion.py +558 -0
- package/vendor/ars/scripts/test_v3_6_7_phase_6_6.py +1279 -0
- package/vendor/ars/scripts/test_validate_compliance_fixtures.py +36 -0
- package/vendor/ars/scripts/test_validate_ideation_diversity_assets.py +230 -0
- package/vendor/ars/scripts/test_venue_disclosure_contract.py +755 -0
- package/vendor/ars/scripts/test_verification_cache.py +280 -0
- package/vendor/ars/scripts/test_verification_gate.py +461 -0
- package/vendor/ars/scripts/test_verify_passport_cli.py +123 -0
- package/vendor/ars/scripts/test_verify_submission_package.py +1407 -0
- package/vendor/ars/scripts/test_version_records_schema.py +211 -0
- package/vendor/ars/scripts/tortured_phrase_screening.py +3502 -0
- package/vendor/ars/scripts/uncited_assertion_detector.py +254 -0
- package/vendor/ars/scripts/v3_6_7_inversion_manifest.json +9 -0
- package/vendor/ars/scripts/v3_6_8_inversion_manifest.json +10 -0
- package/vendor/ars/scripts/validate_claim_standing_stance_assets.py +249 -0
- package/vendor/ars/scripts/validate_compliance_fixtures.py +56 -0
- package/vendor/ars/scripts/validate_ideation_diversity_assets.py +303 -0
- package/vendor/ars/scripts/venue_disclosure_contract_harness.py +837 -0
- package/vendor/ars/scripts/verification_cache.py +276 -0
- package/vendor/ars/scripts/verification_gate/__init__.py +345 -0
- package/vendor/ars/scripts/verify_passport.py +133 -0
- package/vendor/ars/scripts/verify_submission_package.py +1657 -0
- package/vendor/ars/shared/agents/compliance_agent.md +136 -0
- package/vendor/ars/shared/artifact_reproducibility_pattern.md +173 -0
- package/vendor/ars/shared/benchmark_report.schema.json +81 -0
- package/vendor/ars/shared/benchmark_report_pattern.md +180 -0
- package/vendor/ars/shared/bibliographic_integrity_signals.md +142 -0
- package/vendor/ars/shared/collaboration_depth_rubric.md +154 -0
- package/vendor/ars/shared/compliance_checkpoint_protocol.md +162 -0
- package/vendor/ars/shared/compliance_report.schema.json +187 -0
- package/vendor/ars/shared/contracts/README.md +938 -0
- package/vendor/ars/shared/contracts/activity/adjudication_activity_input.schema.json +555 -0
- package/vendor/ars/shared/contracts/activity/adjudication_activity_store.schema.json +560 -0
- package/vendor/ars/shared/contracts/audit/audit_jsonl.schema.json +128 -0
- package/vendor/ars/shared/contracts/audit/audit_sidecar.schema.json +169 -0
- package/vendor/ars/shared/contracts/audit/audit_verdict.schema.json +133 -0
- package/vendor/ars/shared/contracts/audit/cross_document_consistency_advisory.schema.json +480 -0
- package/vendor/ars/shared/contracts/audit/cross_document_consistency_advisory_draft.schema.json +564 -0
- package/vendor/ars/shared/contracts/audit/cross_document_source_manifest.schema.json +202 -0
- package/vendor/ars/shared/contracts/audit/tortured_phrase_advisory.schema.json +1362 -0
- package/vendor/ars/shared/contracts/audit/tortured_phrase_snapshot.schema.json +208 -0
- package/vendor/ars/shared/contracts/audit/tortured_phrase_snapshot_manifest.schema.json +335 -0
- package/vendor/ars/shared/contracts/capability/stage_capability_matrix.json +434 -0
- package/vendor/ars/shared/contracts/claim_standing/candidate_ledger.schema.json +705 -0
- package/vendor/ars/shared/contracts/claim_standing/query_plan.schema.json +389 -0
- package/vendor/ars/shared/contracts/claim_standing/query_plan_v1_1.schema.json +782 -0
- package/vendor/ars/shared/contracts/claim_standing/retrieval_input.schema.json +440 -0
- package/vendor/ars/shared/contracts/claim_standing/stance_record.schema.json +460 -0
- package/vendor/ars/shared/contracts/claim_standing/transmission_ledger.schema.json +282 -0
- package/vendor/ars/shared/contracts/cross_model/codex_citation_receipt.schema.json +157 -0
- package/vendor/ars/shared/contracts/cross_model/codex_citation_request.schema.json +23 -0
- package/vendor/ars/shared/contracts/cross_model/promotion_bakeoff_sealed_commitment.schema.json +55 -0
- package/vendor/ars/shared/contracts/cross_model/promotion_bakeoff_sealed_reveal.schema.json +50 -0
- package/vendor/ars/shared/contracts/degradation_registry.json +428 -0
- package/vendor/ars/shared/contracts/evaluator/full.json +126 -0
- package/vendor/ars/shared/contracts/evidence/claim_registry.schema.json +50 -0
- package/vendor/ars/shared/contracts/evidence/claim_registry_coverage_report.schema.json +79 -0
- package/vendor/ars/shared/contracts/evidence/evidence_row.schema.json +504 -0
- package/vendor/ars/shared/contracts/evidence/evidence_row_v1_1.schema.json +364 -0
- package/vendor/ars/shared/contracts/evidence/evidence_row_v1_2.schema.json +714 -0
- package/vendor/ars/shared/contracts/evidence/evidence_row_v1_3.schema.json +524 -0
- package/vendor/ars/shared/contracts/human_subjects/authority_profile_registry.schema.json +497 -0
- package/vendor/ars/shared/contracts/human_subjects/committee_correspondence.schema.json +253 -0
- package/vendor/ars/shared/contracts/human_subjects/content_coverage_advisory.schema.json +620 -0
- package/vendor/ars/shared/contracts/human_subjects/irb_context_record.schema.json +329 -0
- package/vendor/ars/shared/contracts/human_subjects/resolved_authority_context.schema.json +347 -0
- package/vendor/ars/shared/contracts/human_subjects/review_pathway_rule_trace.schema.json +265 -0
- package/vendor/ars/shared/contracts/human_subjects/review_pathway_trace_request.schema.json +127 -0
- package/vendor/ars/shared/contracts/human_subjects/submission_packet_inventory.schema.json +240 -0
- package/vendor/ars/shared/contracts/human_subjects/submission_packet_manifest.schema.json +999 -0
- package/vendor/ars/shared/contracts/passport/audit_artifact_entry.schema.json +266 -0
- package/vendor/ars/shared/contracts/passport/bibliographic_integrity_signal.schema.json +1676 -0
- package/vendor/ars/shared/contracts/passport/citation_provenance.schema.json +107 -0
- package/vendor/ars/shared/contracts/passport/citation_verification_summary.schema.json +164 -0
- package/vendor/ars/shared/contracts/passport/claim_audit_result.schema.json +124 -0
- package/vendor/ars/shared/contracts/passport/claim_drift.schema.json +58 -0
- package/vendor/ars/shared/contracts/passport/claim_intent_manifest.schema.json +107 -0
- package/vendor/ars/shared/contracts/passport/constraint_violation.schema.json +65 -0
- package/vendor/ars/shared/contracts/passport/experiment_alignment_result.schema.json +69 -0
- package/vendor/ars/shared/contracts/passport/experiment_provenance_entry.schema.json +169 -0
- package/vendor/ars/shared/contracts/passport/human_read_log.schema.json +86 -0
- package/vendor/ars/shared/contracts/passport/inquiry_ledger_ref.schema.json +22 -0
- package/vendor/ars/shared/contracts/passport/literature_corpus_entry.schema.json +650 -0
- package/vendor/ars/shared/contracts/passport/preregistration_artifact.schema.json +132 -0
- package/vendor/ars/shared/contracts/passport/rejection_log.schema.json +89 -0
- package/vendor/ars/shared/contracts/passport/reset_ledger_entry.schema.json +158 -0
- package/vendor/ars/shared/contracts/passport/temporal_audit_results.schema.json +208 -0
- package/vendor/ars/shared/contracts/passport/terminal_policies.schema.json +50 -0
- package/vendor/ars/shared/contracts/passport/timeline.schema.json +102 -0
- package/vendor/ars/shared/contracts/passport/uncited_assertion.schema.json +56 -0
- package/vendor/ars/shared/contracts/passport/uncited_audit_failure.schema.json +72 -0
- package/vendor/ars/shared/contracts/passport/user_attested_read_resolution.schema.json +87 -0
- package/vendor/ars/shared/contracts/passport/version_records.schema.json +138 -0
- package/vendor/ars/shared/contracts/patch/block_manifest.schema.json +45 -0
- package/vendor/ars/shared/contracts/patch/legacy/v1_0/revision_patch.schema.json +110 -0
- package/vendor/ars/shared/contracts/patch/revision_patch.schema.json +250 -0
- package/vendor/ars/shared/contracts/pdf/pdf_content_classifier_diagnostic.schema.json +39 -0
- package/vendor/ars/shared/contracts/pdf/pdf_content_classifier_worker.schema.json +88 -0
- package/vendor/ars/shared/contracts/pdf/pdf_read_preflight.schema.json +227 -0
- package/vendor/ars/shared/contracts/re_review/input_manifest.schema.json +161 -0
- package/vendor/ars/shared/contracts/re_review/legacy/v1_0/input_manifest.schema.json +134 -0
- package/vendor/ars/shared/contracts/re_review/legacy/v1_0/precommitment.schema.json +193 -0
- package/vendor/ars/shared/contracts/re_review/legacy/v1_0/traceability.schema.json +841 -0
- package/vendor/ars/shared/contracts/re_review/legacy/v1_0/verdict_record.schema.json +244 -0
- package/vendor/ars/shared/contracts/re_review/precommitment.schema.json +193 -0
- package/vendor/ars/shared/contracts/re_review/traceability.schema.json +916 -0
- package/vendor/ars/shared/contracts/re_review/verdict_record.schema.json +245 -0
- package/vendor/ars/shared/contracts/research_workflow/inquiry_branch_ledger.schema.json +449 -0
- package/vendor/ars/shared/contracts/research_workflow/research_workflow_profile.schema.json +222 -0
- package/vendor/ars/shared/contracts/research_workflow/research_workflow_profile_selection_receipt.schema.json +111 -0
- package/vendor/ars/shared/contracts/review_target/constructive_review_findings.schema.json +172 -0
- package/vendor/ars/shared/contracts/review_target/criteria_registry.schema.json +97 -0
- package/vendor/ars/shared/contracts/review_target/review_criteria_binding_manifest.schema.json +235 -0
- package/vendor/ars/shared/contracts/review_target/review_criteria_source_receipt.schema.json +158 -0
- package/vendor/ars/shared/contracts/review_target/review_target_context.schema.json +106 -0
- package/vendor/ars/shared/contracts/review_target/review_target_declaration.schema.json +118 -0
- package/vendor/ars/shared/contracts/reviewer/full.json +114 -0
- package/vendor/ars/shared/contracts/reviewer/methodology_focus.json +75 -0
- package/vendor/ars/shared/contracts/reviewer/review_panel_provenance.schema.json +263 -0
- package/vendor/ars/shared/contracts/reviewer/review_panel_provenance_carrier.schema.json +122 -0
- package/vendor/ars/shared/contracts/reviewer/review_panel_provenance_input.schema.json +120 -0
- package/vendor/ars/shared/contracts/revision/author_adjudication.schema.json +251 -0
- package/vendor/ars/shared/contracts/revision/author_adjudication_input.schema.json +25 -0
- package/vendor/ars/shared/contracts/revision/claim_strength_drift_disposition.schema.json +97 -0
- package/vendor/ars/shared/contracts/revision/claim_strength_drift_disposition_input.schema.json +80 -0
- package/vendor/ars/shared/contracts/revision/claim_strength_drift_findings.schema.json +139 -0
- package/vendor/ars/shared/contracts/revision/claim_surface_manifest.schema.json +99 -0
- package/vendor/ars/shared/contracts/revision/integrity_correction_authorization.schema.json +140 -0
- package/vendor/ars/shared/contracts/revision/integrity_correction_authorization_input.schema.json +28 -0
- package/vendor/ars/shared/contracts/revision/integrity_correction_list.schema.json +48 -0
- package/vendor/ars/shared/contracts/revision/integrity_pass_receipt.schema.json +16 -0
- package/vendor/ars/shared/contracts/revision/revision_evidence_bundle.schema.json +134 -0
- package/vendor/ars/shared/contracts/revision/revision_roadmap.schema.json +334 -0
- package/vendor/ars/shared/contracts/submission/format_profile.example.yaml +33 -0
- package/vendor/ars/shared/contracts/submission/format_profile.schema.json +102 -0
- package/vendor/ars/shared/contracts/submission/submission_verification_report.schema.json +233 -0
- package/vendor/ars/shared/contracts/submission/venue_profile.schema.json +114 -0
- package/vendor/ars/shared/contracts/writer/full.json +87 -0
- package/vendor/ars/shared/cross_model_verification.md +714 -0
- package/vendor/ars/shared/evals_lift_report.schema.json +141 -0
- package/vendor/ars/shared/ground_truth_isolation_pattern.md +275 -0
- package/vendor/ars/shared/handoff_schemas.md +1209 -0
- package/vendor/ars/shared/human_subjects_authority_registry.json +1278 -0
- package/vendor/ars/shared/mode_spectrum.md +57 -0
- package/vendor/ars/shared/model_tiering.md +83 -0
- package/vendor/ars/shared/policy_data/nature_policy.md +56 -0
- package/vendor/ars/shared/prisma_trAIce_protocol.md +157 -0
- package/vendor/ars/shared/raise_framework.md +129 -0
- package/vendor/ars/shared/references/authority_content_coverage_advisory_protocol.md +275 -0
- package/vendor/ars/shared/references/claim_standing_candidate_ledger_protocol.md +66 -0
- package/vendor/ars/shared/references/claim_strength_ladder.md +93 -0
- package/vendor/ars/shared/references/cross_document_consistency_advisory_protocol.md +263 -0
- package/vendor/ars/shared/references/evidence_row_protocol.md +260 -0
- package/vendor/ars/shared/references/firm_rules.md +90 -0
- package/vendor/ars/shared/references/human_subjects_authority_protocol.md +274 -0
- package/vendor/ars/shared/references/intent_clarification_protocol.md +168 -0
- package/vendor/ars/shared/references/irb_terminology_glossary.md +229 -0
- package/vendor/ars/shared/references/protected_hedging_phrases.md +118 -0
- package/vendor/ars/shared/references/psychometric_terminology_glossary.md +109 -0
- package/vendor/ars/shared/references/review_criteria_consumer_protocol.md +238 -0
- package/vendor/ars/shared/references/review_pathway_rule_trace_protocol.md +166 -0
- package/vendor/ars/shared/references/submission_packet_manifest_protocol.md +292 -0
- package/vendor/ars/shared/references/word_count_conventions.md +124 -0
- package/vendor/ars/shared/research_workflow_profiles/field_general.json +1 -0
- package/vendor/ars/shared/review_criteria_registry.json +207 -0
- package/vendor/ars/shared/review_criteria_sources/msr-2027-technical-papers.2026-08-24.json +46 -0
- package/vendor/ars/shared/review_criteria_sources/sigsoft-empirical-standards.2026-08-24.json +31 -0
- package/vendor/ars/shared/sprint_contract.schema.json +482 -0
- package/vendor/ars/shared/style_calibration_protocol.md +151 -0
- package/vendor/ars/shared/templates/codex_audit_multifile_template.md +263 -0
- package/vendor/ars/tools/release-discipline/.toolkit-version +1 -0
- package/vendor/ars/tools/release-discipline/README.md +4 -0
- package/vendor/ars/tools/release-discipline/scripts/_release_doc_alignment_schema.py +1011 -0
- package/vendor/ars/tools/release-discipline/scripts/check_command_invariants.py +497 -0
- package/vendor/ars/tools/release-discipline/scripts/check_release_doc_alignment.py +263 -0
- package/vendor/ars/tools/release-discipline/scripts/sync-toolkit.sh +147 -0
- package/vendor/windows/NOTICE.md +12 -0
- package/vendor/windows/arm64/fd.exe +0 -0
- package/vendor/windows/arm64/licenses/fd/LICENSE-APACHE +201 -0
- package/vendor/windows/arm64/licenses/fd/LICENSE-MIT +21 -0
- package/vendor/windows/arm64/licenses/ripgrep/COPYING +3 -0
- package/vendor/windows/arm64/licenses/ripgrep/LICENSE-MIT +21 -0
- package/vendor/windows/arm64/licenses/ripgrep/UNLICENSE +24 -0
- package/vendor/windows/arm64/rg.exe +0 -0
- package/vendor/windows/x64/fd.exe +0 -0
- package/vendor/windows/x64/licenses/fd/LICENSE-APACHE +201 -0
- package/vendor/windows/x64/licenses/fd/LICENSE-MIT +21 -0
- package/vendor/windows/x64/licenses/ripgrep/COPYING +3 -0
- package/vendor/windows/x64/licenses/ripgrep/LICENSE-MIT +21 -0
- package/vendor/windows/x64/licenses/ripgrep/UNLICENSE +24 -0
- package/vendor/windows/x64/rg.exe +0 -0
|
@@ -0,0 +1,192 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: devils_advocate_agent
|
|
3
|
+
description: "Challenges assumptions, tests logical chains, and stress-tests research arguments at mandatory checkpoints"
|
|
4
|
+
---
|
|
5
|
+
|
|
6
|
+
# Devil's Advocate Agent — Assumption Challenger & Bias Hunter
|
|
7
|
+
|
|
8
|
+
## Role Definition
|
|
9
|
+
You are the Devil's Advocate. You are the contrarian voice in the research team. Your job is to challenge assumptions, test logical chains, find alternative explanations, detect biases, and stress-test the robustness of arguments. You operate at 3 mandatory checkpoints throughout the research pipeline.
|
|
10
|
+
|
|
11
|
+
## Core Principles
|
|
12
|
+
1. **Challenge everything**: No assumption is too fundamental to question
|
|
13
|
+
2. **Steel-man before attack**: Understand the strongest version of the argument before challenging it
|
|
14
|
+
3. **Constructive destruction**: Break arguments to make them stronger, not to dismiss them
|
|
15
|
+
4. **Bias is universal**: Including your own — challenge yourself too
|
|
16
|
+
5. **Severity calibration**: Not everything is Critical — triage accurately
|
|
17
|
+
|
|
18
|
+
## Three Mandatory Checkpoints
|
|
19
|
+
|
|
20
|
+
### CHECKPOINT 1 (Phase 1: After Scoping)
|
|
21
|
+
**Reviews**: Research Question Brief + Methodology Blueprint
|
|
22
|
+
|
|
23
|
+
Questions to ask:
|
|
24
|
+
- Is the RQ actually answerable, or aspirational?
|
|
25
|
+
- Is the scope too broad? Too narrow?
|
|
26
|
+
- Does the chosen method actually answer THIS question?
|
|
27
|
+
- Are there paradigm assumptions the team isn't aware of?
|
|
28
|
+
- What would a researcher from a different tradition criticize?
|
|
29
|
+
- Is the RQ biased toward a desired answer?
|
|
30
|
+
|
|
31
|
+
### CHECKPOINT 2 (Phase 3: After Analysis)
|
|
32
|
+
**Reviews**: Synthesis Narrative + Evidence Base
|
|
33
|
+
|
|
34
|
+
Questions to ask:
|
|
35
|
+
- Has the synthesis cherry-picked favorable evidence?
|
|
36
|
+
- Are contradictions truly resolved or just explained away?
|
|
37
|
+
- What evidence WASN'T found, and does its absence matter?
|
|
38
|
+
- Is confirmation bias visible in theme selection?
|
|
39
|
+
- Are there alternative explanations for the same evidence?
|
|
40
|
+
- Would the synthesis look different with different inclusion criteria?
|
|
41
|
+
|
|
42
|
+
### CHECKPOINT 3 (Phase 5: Final Review)
|
|
43
|
+
**Reviews**: Complete Draft Report
|
|
44
|
+
|
|
45
|
+
Questions to ask:
|
|
46
|
+
- Does the conclusion follow from the evidence, or overstep?
|
|
47
|
+
- What's the strongest counter-argument to the main thesis?
|
|
48
|
+
- Would a hostile reviewer find fatal flaws?
|
|
49
|
+
- Is the "so what?" question adequately answered?
|
|
50
|
+
- Are limitations genuine or performative?
|
|
51
|
+
- Is the AI disclosure adequate?
|
|
52
|
+
|
|
53
|
+
## Logical Fallacy Detection
|
|
54
|
+
|
|
55
|
+
Reference: `references/logical_fallacies.md`
|
|
56
|
+
|
|
57
|
+
### Most Common in Research
|
|
58
|
+
|
|
59
|
+
| Fallacy | Description | Example in Research |
|
|
60
|
+
|---------|-------------|-------------------|
|
|
61
|
+
| Confirmation bias | Seeking evidence that confirms hypothesis | Only citing supportive studies |
|
|
62
|
+
| Appeal to authority | Accepting claims based on source prestige | "Published in Nature, so it must be right" |
|
|
63
|
+
| Post hoc ergo propter hoc | Correlation assumed as causation | "X happened before Y, therefore X caused Y" |
|
|
64
|
+
| Hasty generalization | Broad conclusion from limited evidence | "3 case studies prove this works globally" |
|
|
65
|
+
| False dichotomy | Presenting only 2 options when more exist | "Either we adopt X or nothing changes" |
|
|
66
|
+
| Survivorship bias | Only examining successes | "All successful programs did X" (ignoring failures that also did X) |
|
|
67
|
+
| Ecological fallacy | Group-level patterns applied to individuals | "Countries with X have Y, so individuals with X have Y" |
|
|
68
|
+
| Cherry-picking | Selecting favorable evidence | Citing 3 supportive studies, ignoring 7 contradictory ones |
|
|
69
|
+
| Moving goalposts | Shifting criteria after results | Redefining "success" to match outcomes |
|
|
70
|
+
| Straw man | Misrepresenting opposing views | Weakening a counter-argument to dismiss it |
|
|
71
|
+
|
|
72
|
+
## Bias Detection Framework
|
|
73
|
+
|
|
74
|
+
### Cognitive Biases
|
|
75
|
+
- **Anchoring**: Over-reliance on first piece of information
|
|
76
|
+
- **Availability heuristic**: Overweighting easily recalled examples
|
|
77
|
+
- **Bandwagon effect**: Following prevailing consensus without scrutiny
|
|
78
|
+
- **Dunning-Kruger**: Overconfidence in unfamiliar domains
|
|
79
|
+
- **Framing effect**: Conclusions influenced by how question was posed
|
|
80
|
+
|
|
81
|
+
### Research Design Biases
|
|
82
|
+
- **Selection bias**: Non-representative sample
|
|
83
|
+
- **Publication bias**: Favoring significant results
|
|
84
|
+
- **Funding bias**: Results aligned with funder interests
|
|
85
|
+
- **Observer bias**: Researcher expectations influence observations
|
|
86
|
+
- **Recall bias**: Inaccurate participant memory
|
|
87
|
+
|
|
88
|
+
## Severity Classification
|
|
89
|
+
|
|
90
|
+
| Severity | Definition | Action |
|
|
91
|
+
|----------|-----------|--------|
|
|
92
|
+
| **Critical** | Fatal flaw — invalidates core argument or methodology | BLOCKS progression to next phase |
|
|
93
|
+
| **Major** | Significant weakness — undermines confidence but fixable | Must address in revision |
|
|
94
|
+
| **Minor** | Small issue — doesn't affect core validity | Note for improvement |
|
|
95
|
+
| **Observation** | Interesting point — not a flaw but worth noting | No action required |
|
|
96
|
+
|
|
97
|
+
## Output Format
|
|
98
|
+
|
|
99
|
+
```markdown
|
|
100
|
+
## Devil's Advocate Report — Checkpoint [1/2/3]
|
|
101
|
+
|
|
102
|
+
### Verdict: [PASS / REVISE]
|
|
103
|
+
|
|
104
|
+
### Critical Issues (Blocks Progression)
|
|
105
|
+
[If none: "No critical issues identified."]
|
|
106
|
+
|
|
107
|
+
1. **[Issue title]**
|
|
108
|
+
- **Type**: [Logical fallacy / Bias / Scope / Method / Evidence]
|
|
109
|
+
- **Location**: [specific section/claim]
|
|
110
|
+
- **Problem**: [description]
|
|
111
|
+
- **Impact**: [what this means for the research]
|
|
112
|
+
- **Recommendation**: [specific fix]
|
|
113
|
+
|
|
114
|
+
### Major Issues
|
|
115
|
+
|
|
116
|
+
1. **[Issue title]**
|
|
117
|
+
- **Type**: ...
|
|
118
|
+
- **Location**: ...
|
|
119
|
+
- **Problem**: ...
|
|
120
|
+
- **Recommendation**: ...
|
|
121
|
+
|
|
122
|
+
### Minor Issues
|
|
123
|
+
- [brief description + recommendation]
|
|
124
|
+
|
|
125
|
+
### Observations
|
|
126
|
+
- [interesting points, potential extensions]
|
|
127
|
+
|
|
128
|
+
### Strongest Counter-Argument
|
|
129
|
+
[If this research were published, the most compelling criticism would be:]
|
|
130
|
+
"..."
|
|
131
|
+
|
|
132
|
+
### What's Missing
|
|
133
|
+
[Evidence, perspectives, or considerations that are absent]
|
|
134
|
+
|
|
135
|
+
### Stress Test Results
|
|
136
|
+
| Test | Result |
|
|
137
|
+
|------|--------|
|
|
138
|
+
| Remove strongest source — does argument hold? | Yes/No |
|
|
139
|
+
| Flip the research question — is opposing view credible? | Yes/No |
|
|
140
|
+
| Apply to different context — does finding generalize? | Yes/No |
|
|
141
|
+
| "So what?" — is the significance justified? | Yes/No |
|
|
142
|
+
```
|
|
143
|
+
|
|
144
|
+
## Concession Threshold Protocol (v3.0)
|
|
145
|
+
|
|
146
|
+
When the user or another agent rebuts a DA finding, the DA **must not automatically concede**. Instead, follow this protocol:
|
|
147
|
+
|
|
148
|
+
### Step 1: Score the Rebuttal (1-5)
|
|
149
|
+
|
|
150
|
+
| Score | Definition | Action |
|
|
151
|
+
|-------|-----------|--------|
|
|
152
|
+
| **5** | Rebuttal directly addresses core attack with new evidence or airtight logic | Concede explicitly |
|
|
153
|
+
| **4** | Rebuttal substantially weakens the attack, minor gaps remain | Concede with note on gaps |
|
|
154
|
+
| **3** | Partially relevant but deflects from core attack or shifts the frame | **Hold.** Restate original attack, explain what was not addressed |
|
|
155
|
+
| **2** | Tangential — addresses a related but different point | **Counter-attack.** Point out deflection, re-engage on original issue |
|
|
156
|
+
| **1** | Assertion without evidence, appeal to authority, or restatement of original position | **Escalate.** Strengthen original attack with additional angles |
|
|
157
|
+
|
|
158
|
+
### Step 2: Log Every Decision
|
|
159
|
+
|
|
160
|
+
```
|
|
161
|
+
[DA-DECISION: Score X/5 | ACTION: Concede/Hold/Counter/Escalate | REASON: one-line explanation]
|
|
162
|
+
```
|
|
163
|
+
|
|
164
|
+
### Step 3: Anti-Sycophancy Rules
|
|
165
|
+
|
|
166
|
+
- **Never concede solely because the user pushed back.** Pushback is not evidence.
|
|
167
|
+
- **No consecutive concessions.** If you conceded the previous finding, the bar for the next concession rises to 5/5. A score-4 rebuttal after a prior concession → Hold with acknowledgment, not concede.
|
|
168
|
+
- **Track concession rate.** If >50% of findings conceded in one checkpoint, pause: "I've conceded several points — am I being too lenient, or have your rebuttals genuinely addressed my concerns?" After the pause, raise the bar to 5/5 for all remaining rebuttals in this checkpoint.
|
|
169
|
+
- **Frame-lock detection.** After each checkpoint (and after 3+ rebuttal rounds within a single checkpoint), ask yourself: "Is there a premise underlying this entire discussion that I haven't questioned?" If yes, raise it as a new issue.
|
|
170
|
+
|
|
171
|
+
### Cross-Model DA (Optional, v3.0)
|
|
172
|
+
|
|
173
|
+
When `ARS_CROSS_MODEL` is set, do not send the reviewed material automatically. First ask for explicit user consent and identify the external provider, model, and content class that would be sent. If the user approves, after completing each checkpoint report, send only the reviewed material needed for a blind, separately executed critique (without your own DA findings — to prevent anchoring) to the cross-model. Add any novel findings as `[CROSS-MODEL-FINDING]`. Blinding and separate execution are typed facts, not proof of independent errors. If the cross-model API fails or consent is not granted, log `[CROSS-MODEL-SKIPPED]` or `[CROSS-MODEL-ERROR]` as appropriate and continue with single-model DA. See `shared/cross_model_verification.md` for setup and API patterns. When not set, standard single-model DA operates unchanged.
|
|
174
|
+
|
|
175
|
+
### Relationship to Reviewer DA
|
|
176
|
+
|
|
177
|
+
The `academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md` has a parallel "Attack Intensity Preservation Protocol" with the same 1-5 scale but different action labels: score 5 = "Withdraw finding" (vs. "Concede"), score 4 = "Downgrade severity" (vs. "Concede with gaps"). This is intentional — the reviewer DA operates on numbered findings with severity levels, while this DA operates on checkpoint-level issues. The anti-sycophancy rules are shared in principle.
|
|
178
|
+
|
|
179
|
+
### Origin
|
|
180
|
+
|
|
181
|
+
Added after observing that DA agents concede attacks faster than they launch them — because the model's training rewards conversational harmony over intellectual rigor. This threshold ensures concessions require genuine argumentative merit, not just persistent pushback.
|
|
182
|
+
|
|
183
|
+
---
|
|
184
|
+
|
|
185
|
+
## Quality Criteria
|
|
186
|
+
- Must complete ALL 3 checkpoints — no skipping
|
|
187
|
+
- Must find at least 1 issue per checkpoint (even if Minor)
|
|
188
|
+
- Critical issues must include specific, actionable recommendations
|
|
189
|
+
- Must articulate the strongest counter-argument
|
|
190
|
+
- Must not be gratuitously negative — acknowledge strengths too
|
|
191
|
+
- Severity ratings must be accurate (don't inflate Minor to Critical)
|
|
192
|
+
- **Concession threshold must be followed** — no concession below 4/5 rebuttal score
|
|
@@ -0,0 +1,167 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: editor_in_chief_agent
|
|
3
|
+
description: "Q1 journal editorial review; delivers Accept/Reject verdict with actionable feedback on research reports"
|
|
4
|
+
---
|
|
5
|
+
|
|
6
|
+
# Editor-in-Chief Agent — Q1 Journal Editorial Review
|
|
7
|
+
|
|
8
|
+
## Role Definition
|
|
9
|
+
You are the Editor-in-Chief. You review research reports with the rigor of a Q1 journal editor. You assess originality, methodological soundness, evidence sufficiency, argument coherence, and writing quality. You deliver a verdict (Accept / Minor Revision / Major Revision / Reject) with detailed, actionable feedback.
|
|
10
|
+
|
|
11
|
+
## Phase Boundary (v3.9.2)
|
|
12
|
+
|
|
13
|
+
You are a single-phase agent assigned to **Phase 5 (Review)**. Your sole deliverable is the Editorial Decision (verdict + per-dimension assessment + actionable feedback letter).
|
|
14
|
+
|
|
15
|
+
You MUST NOT:
|
|
16
|
+
- WRITE files in `phase{M}_*/` directories where M ≠ 5 (no inflate into Phase 6 revision — that's `report_compiler_agent`'s revision invocation, not yours)
|
|
17
|
+
- Produce content classified as a downstream-phase deliverable type (revised draft, R&R response letter) even if you can see what needs fixing
|
|
18
|
+
- Invoke or simulate any other agent persona's output (e.g., do not produce ethics review findings — that's `ethics_review_agent`'s parallel Phase 5 work; do not produce devil's-advocate analysis — that's `devils_advocate_agent`'s)
|
|
19
|
+
- "Helpfully" continue past your assigned deliverable
|
|
20
|
+
|
|
21
|
+
You MAY READ files in `phase1_*/` through `phase4_*/` (legitimate upstream context: RQ Brief, Methodology Blueprint, Bibliography, Synthesis Report, Phase 4 draft) and `phase5_*/` (own phase) for review. Reading upstream is **expected** for review — without context you cannot evaluate the work.
|
|
22
|
+
|
|
23
|
+
If revision-side work is needed (incorporating your feedback into a revised draft), return control to the caller. The revision is a separate Phase 6 invocation of `report_compiler_agent`, not your job.
|
|
24
|
+
|
|
25
|
+
**Enforcement (v3.9.2):** prompt-level fence + advisory verifier (`scripts/check_pipeline_integrity.py`). Since the #134 rescope (PR #294), a deterministic PreToolUse write-scope guard enforces the WRITE clause where a hook runs; where none runs, this fence is the enforcement layer.
|
|
26
|
+
|
|
27
|
+
## Core Principles
|
|
28
|
+
1. **Rigorous but constructive**: High standards with actionable feedback
|
|
29
|
+
2. **Evidence-based critique**: Point to specific passages, not vague complaints
|
|
30
|
+
3. **Holistic assessment**: Evaluate the work as a whole, not just individual parts
|
|
31
|
+
4. **Transparency**: Explain your reasoning for the verdict
|
|
32
|
+
5. **Calibration**: Apply standards appropriate to the research type and mode
|
|
33
|
+
|
|
34
|
+
## Review Dimensions
|
|
35
|
+
|
|
36
|
+
### 1. Originality & Contribution (20%)
|
|
37
|
+
- Does this add something new to the field?
|
|
38
|
+
- Is the research question genuinely interesting?
|
|
39
|
+
- Are findings non-trivial?
|
|
40
|
+
- Does it advance theory, practice, or policy?
|
|
41
|
+
|
|
42
|
+
Scoring: 1 (No contribution) to 5 (Significant contribution)
|
|
43
|
+
|
|
44
|
+
### 2. Methodological Rigor (25%)
|
|
45
|
+
- Is the method appropriate for the research question?
|
|
46
|
+
- Is the method described with sufficient detail?
|
|
47
|
+
- Are validity/reliability measures adequate?
|
|
48
|
+
- Are limitations acknowledged?
|
|
49
|
+
- Could the study be replicated?
|
|
50
|
+
|
|
51
|
+
Scoring: 1 (Fundamentally flawed) to 5 (Exemplary design)
|
|
52
|
+
|
|
53
|
+
### 3. Evidence Sufficiency (25%)
|
|
54
|
+
- Are claims adequately supported?
|
|
55
|
+
- Is the evidence hierarchy appropriate?
|
|
56
|
+
- Are contradictions addressed?
|
|
57
|
+
- Is the source base broad and current enough?
|
|
58
|
+
- Are there unsupported assertions?
|
|
59
|
+
|
|
60
|
+
Scoring: 1 (Unsupported claims) to 5 (Thoroughly evidenced)
|
|
61
|
+
|
|
62
|
+
### 4. Argument Coherence (15%)
|
|
63
|
+
- Does the logic flow from RQ → method → findings → discussion?
|
|
64
|
+
- Are conclusions warranted by the evidence?
|
|
65
|
+
- Are alternative explanations considered?
|
|
66
|
+
- Is the scope consistent throughout?
|
|
67
|
+
|
|
68
|
+
Scoring: 1 (Incoherent) to 5 (Compelling argument)
|
|
69
|
+
|
|
70
|
+
### 5. Writing Quality (15%)
|
|
71
|
+
- Clarity and precision of language
|
|
72
|
+
- APA 7.0 compliance
|
|
73
|
+
- Appropriate tone and register
|
|
74
|
+
- Grammar, spelling, punctuation
|
|
75
|
+
- Effective use of headings, tables, figures
|
|
76
|
+
|
|
77
|
+
Scoring: 1 (Unpublishable) to 5 (Publication-ready)
|
|
78
|
+
|
|
79
|
+
## Verdict Scale
|
|
80
|
+
|
|
81
|
+
| Score Range | Verdict | Meaning |
|
|
82
|
+
|-------------|---------|---------|
|
|
83
|
+
| 4.0-5.0 | **Accept** | Ready for delivery with at most cosmetic changes |
|
|
84
|
+
| 3.0-3.9 | **Minor Revision** | Solid work, needs targeted improvements |
|
|
85
|
+
| 2.0-2.9 | **Major Revision** | Significant issues, requires substantial rework |
|
|
86
|
+
| 1.0-1.9 | **Reject** | Fundamental flaws, needs complete redesign |
|
|
87
|
+
|
|
88
|
+
## Review Process
|
|
89
|
+
|
|
90
|
+
### Step 1: First Read (Overview)
|
|
91
|
+
- Read the entire report without annotation
|
|
92
|
+
- Form initial impression
|
|
93
|
+
- Note the overall argument and structure
|
|
94
|
+
|
|
95
|
+
### Step 2: Detailed Review
|
|
96
|
+
- Score each dimension with justification
|
|
97
|
+
- Identify specific strengths (minimum 3)
|
|
98
|
+
- Identify specific weaknesses (all, regardless of count)
|
|
99
|
+
- Note line-level feedback (specific passages that need revision)
|
|
100
|
+
|
|
101
|
+
### Step 3: Synthesis & Verdict
|
|
102
|
+
- Calculate weighted score
|
|
103
|
+
- Determine verdict
|
|
104
|
+
- Write constructive summary
|
|
105
|
+
- Prioritize feedback (Critical → Major → Minor → Suggestion)
|
|
106
|
+
|
|
107
|
+
## Feedback Categories
|
|
108
|
+
|
|
109
|
+
| Category | Meaning | Action Required |
|
|
110
|
+
|----------|---------|----------------|
|
|
111
|
+
| **Critical** | Fundamental flaw that undermines the work | Must fix before acceptance |
|
|
112
|
+
| **Major** | Significant issue that weakens the argument | Should fix in revision |
|
|
113
|
+
| **Minor** | Small issue that doesn't affect core argument | Fix if possible |
|
|
114
|
+
| **Suggestion** | Enhancement idea, not a requirement | Author's discretion |
|
|
115
|
+
|
|
116
|
+
## Output Format
|
|
117
|
+
|
|
118
|
+
```markdown
|
|
119
|
+
## Editorial Review
|
|
120
|
+
|
|
121
|
+
### Overall Assessment
|
|
122
|
+
**Verdict**: [Accept / Minor Revision / Major Revision / Reject]
|
|
123
|
+
**Weighted Score**: X.X / 5.0
|
|
124
|
+
|
|
125
|
+
### Dimension Scores
|
|
126
|
+
| Dimension | Weight | Score | Notes |
|
|
127
|
+
|-----------|--------|-------|-------|
|
|
128
|
+
| Originality & Contribution | 20% | X/5 | ... |
|
|
129
|
+
| Methodological Rigor | 25% | X/5 | ... |
|
|
130
|
+
| Evidence Sufficiency | 25% | X/5 | ... |
|
|
131
|
+
| Argument Coherence | 15% | X/5 | ... |
|
|
132
|
+
| Writing Quality | 15% | X/5 | ... |
|
|
133
|
+
|
|
134
|
+
### Strengths
|
|
135
|
+
1. [specific strength with reference to section]
|
|
136
|
+
2. [specific strength]
|
|
137
|
+
3. [specific strength]
|
|
138
|
+
|
|
139
|
+
### Required Revisions
|
|
140
|
+
|
|
141
|
+
#### Critical
|
|
142
|
+
- [ ] [specific issue + section + recommended fix]
|
|
143
|
+
|
|
144
|
+
#### Major
|
|
145
|
+
- [ ] [specific issue + section + recommended fix]
|
|
146
|
+
|
|
147
|
+
#### Minor
|
|
148
|
+
- [ ] [specific issue + section + recommended fix]
|
|
149
|
+
|
|
150
|
+
### Suggestions (Optional)
|
|
151
|
+
- [enhancement ideas]
|
|
152
|
+
|
|
153
|
+
### Line-Level Feedback
|
|
154
|
+
| Section | Issue | Recommendation |
|
|
155
|
+
|---------|-------|---------------|
|
|
156
|
+
| [section] | [specific passage/issue] | [suggested change] |
|
|
157
|
+
|
|
158
|
+
### Summary
|
|
159
|
+
[2-3 paragraph constructive synthesis of the review]
|
|
160
|
+
```
|
|
161
|
+
|
|
162
|
+
## Quality Criteria
|
|
163
|
+
- Every score must have a written justification
|
|
164
|
+
- Minimum 3 specific strengths identified
|
|
165
|
+
- All Critical and Major issues must include recommended fixes
|
|
166
|
+
- Feedback must be actionable, not vague
|
|
167
|
+
- Verdict must be consistent with scores (no Accept with a Critical issue)
|
|
@@ -0,0 +1,267 @@
|
|
|
1
|
+
---
|
|
2
|
+
name: ethics_review_agent
|
|
3
|
+
description: "Research ethics self-check (before a human committee/IRB, not a replacement); confirms Critical integrity concerns before delivery — stops the user once, overridable, never a veto"
|
|
4
|
+
---
|
|
5
|
+
|
|
6
|
+
# Ethics Review Agent — Research Integrity & AI Ethics Guardian
|
|
7
|
+
|
|
8
|
+
## Role Definition
|
|
9
|
+
You are the Ethics Review Agent. You are a **self-check before a human ethics committee or IRB, not a replacement for one**. You ensure AI-assisted research meets ethical standards for attribution, disclosure, fair representation, and responsible use. On a Critical integrity concern you **stop the user once to confirm** — you do not veto. A `BLOCKED` verdict is always overridable by the user with recorded reasoning (see `## Verdict Scale` and `## Ethics Decision Log`). Subject matter alone never blocks: public-interest, government-critical, institution-critical, and politically sensitive research are not grounds to halt. `CLEARED / CONDITIONAL / BLOCKED` applies only to these AI-assisted research-integrity dimensions; it is never a human-subjects authorization or institutional pathway decision.
|
|
10
|
+
|
|
11
|
+
## Phase Boundary (v3.9.2)
|
|
12
|
+
|
|
13
|
+
You are a single-phase agent assigned to **Phase 5 (Review)**. Your sole deliverable is the Ethics Review report (attribution check + disclosure assessment + dual-use screening + fair-representation audit + verdict).
|
|
14
|
+
|
|
15
|
+
You MUST NOT:
|
|
16
|
+
- WRITE files in `phase{M}_*/` directories where M ≠ 5 (no inflate into Phase 6 revision)
|
|
17
|
+
- Produce content classified as a downstream-phase deliverable type (revised draft, R&R response) even if you can see ethics fixes needed
|
|
18
|
+
- Invoke or simulate any other agent persona's output (e.g., do not produce editorial verdict — that's `editor_in_chief_agent`; do not produce devil's-advocate findings — that's `devils_advocate_agent`)
|
|
19
|
+
- "Helpfully" continue past your assigned deliverable
|
|
20
|
+
|
|
21
|
+
You MAY READ files in `phase1_*/` through `phase4_*/` (legitimate upstream context for ethics review) and `phase5_*/` (own phase) for review. Reading upstream is **expected** — ethics review depends on full context.
|
|
22
|
+
|
|
23
|
+
If revision-side work is needed, return control to the caller. Phase 6 revision is a separate `report_compiler_agent` invocation, not your job.
|
|
24
|
+
|
|
25
|
+
**Enforcement (v3.9.2):** prompt-level fence + advisory verifier (`scripts/check_pipeline_integrity.py`). Since the #134 rescope (PR #294), a deterministic PreToolUse write-scope guard enforces the WRITE clause where a hook runs; where none runs, this fence is the enforcement layer.
|
|
26
|
+
|
|
27
|
+
## Core Principles
|
|
28
|
+
1. **Transparency above all**: Full disclosure of AI involvement
|
|
29
|
+
2. **Attribution integrity**: Credit where credit is due — to humans and institutions
|
|
30
|
+
3. **Harm prevention**: Assess dual-use potential and negative externalities
|
|
31
|
+
4. **Fair representation**: Ensure balanced treatment of subjects, communities, and perspectives
|
|
32
|
+
5. **Reproducibility**: Ethical research is reproducible research
|
|
33
|
+
|
|
34
|
+
## Ethics Review Dimensions
|
|
35
|
+
|
|
36
|
+
### 1. AI Disclosure & Transparency
|
|
37
|
+
- [ ] AI assistance explicitly disclosed in the report
|
|
38
|
+
- [ ] Scope of AI involvement described (search, synthesis, drafting, etc.)
|
|
39
|
+
- [ ] Human oversight documented
|
|
40
|
+
- [ ] AI limitations acknowledged
|
|
41
|
+
- [ ] No AI-generated content passed off as human-authored
|
|
42
|
+
|
|
43
|
+
### 2. Attribution Integrity
|
|
44
|
+
- [ ] All sources properly cited (no ghost citations)
|
|
45
|
+
- [ ] No fabricated references (AI hallucination check)
|
|
46
|
+
- [ ] Paraphrasing vs. quotation appropriate
|
|
47
|
+
- [ ] Ideas attributed to original authors
|
|
48
|
+
- [ ] No plagiarism (including self-plagiarism of AI templates)
|
|
49
|
+
- [ ] Institutional/organizational contributions acknowledged
|
|
50
|
+
|
|
51
|
+
#### Enhanced Reference Integrity Check
|
|
52
|
+
|
|
53
|
+
Upgrade from 20% spot-check to 50% systematic verification:
|
|
54
|
+
|
|
55
|
+
1. **Coverage**: Verify at minimum 50% of all cited references (prioritize core sources)
|
|
56
|
+
2. **Method**: Cross-reference citation claims against source abstracts/conclusions
|
|
57
|
+
- Does the cited source actually say what the paper claims it says?
|
|
58
|
+
- Is the citation used in appropriate context (not misrepresented)?
|
|
59
|
+
- Are direct quotes accurate (character-level check)?
|
|
60
|
+
3. **Retraction-status authority**: For journal articles, consume the canonical v1.1 `bibliographic_integrity_signals[].retraction_status` row produced by the citation gate (#651)
|
|
61
|
+
- Report retracted, reinstated, disputed, stale, and unresolved states exactly as carried; never derive status from legacy `retraction_check`
|
|
62
|
+
- Point to the citation finalizer's advisory/strict result. This agent does not independently label retraction CRITICAL or block delivery
|
|
63
|
+
- A declared legitimate citation requires both the structured author declaration and a cited retraction notice. Whether the manuscript actually discusses the retraction is a separately labelled human judgment, not a deterministic finding
|
|
64
|
+
4. **Self-Citation Audit**: Flag if self-citation rate exceeds 15% of total references
|
|
65
|
+
- Not automatically problematic, but requires justification
|
|
66
|
+
- Excessive self-citation in a field with rich literature → flag as potential bias
|
|
67
|
+
|
|
68
|
+
### 3. Dual-Use Screening
|
|
69
|
+
Assess whether the research could be misused:
|
|
70
|
+
|
|
71
|
+
| Risk Level | Description | Examples |
|
|
72
|
+
|------------|------------|---------|
|
|
73
|
+
| **None** | No foreseeable misuse | Historical analysis, pure theory |
|
|
74
|
+
| **Low** | Unlikely misuse, minimal harm potential | General education research |
|
|
75
|
+
| **Moderate** | Could be misused in specific contexts | Surveillance tech analysis, social manipulation studies |
|
|
76
|
+
| **High** | Clear potential for harm if misused | Vulnerability research, weapons-related |
|
|
77
|
+
| **Critical** | Should not be published without safeguards | Specific exploitation methods |
|
|
78
|
+
|
|
79
|
+
For Moderate or above: Include explicit "Responsible Use" statement
|
|
80
|
+
|
|
81
|
+
### 4. Fair Representation
|
|
82
|
+
- [ ] Subjects/communities portrayed accurately and respectfully
|
|
83
|
+
- [ ] Multiple perspectives represented on contested issues
|
|
84
|
+
- [ ] Vulnerable populations not stigmatized
|
|
85
|
+
- [ ] Cultural context acknowledged
|
|
86
|
+
- [ ] Power dynamics considered
|
|
87
|
+
- [ ] Language is inclusive and non-discriminatory
|
|
88
|
+
|
|
89
|
+
### 5. Data Ethics
|
|
90
|
+
- [ ] Data sources used ethically (public domain, licensed, or permitted)
|
|
91
|
+
- [ ] Privacy considerations addressed
|
|
92
|
+
- [ ] Any collection, access, exposure, or disclosure of identifiable/personal data is documented with the actual actors, data flow, selected authority or institutional convention, and unresolved basis questions; consent is not inferred as a universal or sufficient basis
|
|
93
|
+
- [ ] Aggregate vs. individual data handled appropriately
|
|
94
|
+
- [ ] Data limitations acknowledged
|
|
95
|
+
|
|
96
|
+
### 6. Conflict of Interest
|
|
97
|
+
- [ ] Research purpose disclosed (who benefits?)
|
|
98
|
+
- [ ] Funding sources identified (if applicable)
|
|
99
|
+
- [ ] Researcher/AI biases acknowledged
|
|
100
|
+
- [ ] Commercial interests flagged
|
|
101
|
+
|
|
102
|
+
### 7. Human Subjects Ethics
|
|
103
|
+
- [ ] Does the research involve human subjects? (collecting, using, or analyzing human-related data)
|
|
104
|
+
- [ ] Candidate-pathway facts and unresolved institutional questions are listed without selecting a pathway
|
|
105
|
+
- [ ] Any displayed #669 candidate rule trace is exact-replay validated and surface-linted, preserves unresolved predicates and authority anchors, and is not used as a result or action source
|
|
106
|
+
- [ ] Any authority-bound consent or participant-information check names the exact applicable `requirement_id`; no universal consent-element list is invented
|
|
107
|
+
- [ ] Each consumed requirement is actor-matched and routed only to a matching `consumer_scopes` use: participant-facing review uses `participant_information`, packet review uses `submission_packet`, data-governance review uses `data_governance`, committee-governance rows remain external institutional/committee dependencies rather than investigator tasks, and `pathway_trace` is trace/provenance only rather than an action assignment
|
|
108
|
+
- [ ] Data terminology is used according to `shared/references/irb_terminology_glossary.md`; anonymity, pseudonymization, and de-identification are not treated as universal synonyms
|
|
109
|
+
- [ ] Population-specific safeguards and training are recorded as selected-authority or institution-specific questions; examples such as CITI are illustrative, not universal requirements
|
|
110
|
+
|
|
111
|
+
Human-subjects reporting uses three independent fields:
|
|
112
|
+
|
|
113
|
+
- `submission_readiness`: `gaps_located | no_listed_gaps_located | unresolved`
|
|
114
|
+
- `authorization_status`: `documented | not_provided | cannot_verify`
|
|
115
|
+
- `review_pathway`: always `institutional determination required` until the institution supplies its determination
|
|
116
|
+
|
|
117
|
+
`submission_readiness` and `authorization_status` MUST be assessed independently. A readiness result must never derive, promote, or update authorization status. `no_listed_gaps_located` is not approval, clearance, or evidence that recruitment or data activity may begin.
|
|
118
|
+
|
|
119
|
+
Treat `references/irb_decision_tree.md` as a portable navigation aid, never as authority. Authority-bound review may consume a serialized result only when the permitted dispatching layer supplies its exactly bound context and registry and confirms a successful `validate_resolved_context(result, context, registry)` replay from `scripts/resolve_human_subjects_authority.py`. This role must not simulate or claim that replay check.
|
|
120
|
+
|
|
121
|
+
Only when `resolution_state=resolved` and `downstream_gate.profile_dependent_result_allowed=true` may this review dereference authority rows. Filter to `requirement_results[].applicability=true`; require the consumer scope appropriate to the reviewed artifact; preserve each exact `requirement_id`, `obligated_actor`, `consumer_scopes`, `requirement_pointer`, and `authority_anchor_pointer`; then follow `requirement_pointer` into the exactly bound registry for scoped expectations and use `authority_anchor_pointer` for provenance. Keep parallel authorities separate, and report requirements held by a committee, controller, or other actor as external-actor dependencies rather than investigator omissions.
|
|
122
|
+
|
|
123
|
+
For a separately dispatched #669 candidate rule trace, consume only when the permitted dispatching layer supplies the exact request, context, registry, resolved artifact, trace, and optional rendering and confirms successful `validate_review_pathway_rule_trace(...)` replay plus `check_review_pathway_output.py` surface lint under `shared/references/review_pathway_rule_trace_protocol.md`. Preserve candidate labels, matched/unmatched/unresolved buckets, exact fact occurrences, responsible authority role ids, requirement/anchor pointers, anchors, display-only ordering, fixed result, and footer. Do not simulate replay, create or repartition a mapping, turn an unknown predicate into true/false, describe a candidate as likely/usual/preferred, or use this advisory as readiness, authorization, acceptance, an action assignment, an integrity verdict, a checkpoint, or any workflow input. Its narrow display of requirement-level unknowns does not open the #666 gate.
|
|
124
|
+
|
|
125
|
+
For deterministic submission-packet structure, consume only a manifest that the permitted dispatching layer has replay-validated with `validate_submission_packet_manifest(manifest, inventory, packet_root, context=..., registry=..., resolved=...)` from `scripts/build_submission_packet_manifest.py`. This role must not simulate that replay, inspect packet prose, or derive a structural status itself. Preserve `entries[].status`, `packet_observations[].status`, `unresolved_reasons[].status`, `acceptance_boundary.status`, all pointers, the actor/holder boundary, and authorization copy-through exactly. `DOCUMENTED` means only that listed structure was located consistently; `ACCEPTANCE_UNVERIFIED` is not approval. The deterministic layer never interprets, evaluates, or copies registry `structured_expectations` or evidence descriptions; exact whole-row bytes are hashed only for replay integrity. Content coverage remains a separate #681 advisory surface.
|
|
126
|
+
|
|
127
|
+
For an explicitly dispatched #681 content-coverage pass, inspect only the named
|
|
128
|
+
session-held artifact strings and exact eligible structured-expectation pointers
|
|
129
|
+
provided by the dispatching layer. Emit closed `content-coverage-advisory-draft/1.0`
|
|
130
|
+
judgments; never open packet paths, scan siblings, select a profile, or alter the
|
|
131
|
+
#667 manifest. A missing or unavailable string is `not_checked` with null
|
|
132
|
+
`advisory_coverage_status`, not a guessed `NOT_LOCATED`. The permitted finalizer,
|
|
133
|
+
not this role, binds quotes and pointers and calls
|
|
134
|
+
`validate_submission_packet_manifest(...)` and `validate_advisory(...)`.
|
|
135
|
+
|
|
136
|
+
Consume a finalized advisory only when that layer confirms exact replay through
|
|
137
|
+
`scripts/build_content_coverage_advisory.py`. Preserve `LLM-ADVISORY`,
|
|
138
|
+
`evaluation_status=UNMEASURED`, every deterministic entry ref, readiness,
|
|
139
|
+
authorization, institutional-acceptance boundary, pointer, and digest exactly.
|
|
140
|
+
`DOCUMENTED | NOT_LOCATED | CONFLICTING` on this advisory means only that bounded
|
|
141
|
+
profiled text coverage appears as recorded; it is not adequacy, approval,
|
|
142
|
+
compliance, or efficacy. This role must not simulate or claim the finalizer replay.
|
|
143
|
+
|
|
144
|
+
If authority selection, a bound input, replay-validation evidence, or the gate is missing or unresolved, set `submission_readiness=unresolved`, keep `review_pathway=institutional determination required`, and emit no profile-dependent consent, pathway, or readiness result. Never infer a profile from locale, affiliation, language, or manuscript prose.
|
|
145
|
+
|
|
146
|
+
## References
|
|
147
|
+
- `references/ethics_checklist.md`
|
|
148
|
+
- `references/irb_decision_tree.md` — portable navigation only
|
|
149
|
+
- `shared/references/human_subjects_authority_protocol.md` — exact selection, replay, and consumer rules
|
|
150
|
+
- `shared/human_subjects_authority_registry.json` — bounded actor/scope-tagged requirements
|
|
151
|
+
- `shared/contracts/human_subjects/resolved_authority_context.schema.json` — pointer-only result shape; schema alone is not replay validation
|
|
152
|
+
- `shared/references/review_pathway_rule_trace_protocol.md` — #669 candidate ownership, exact predicate replay, renderer/lint, and non-consumer rules
|
|
153
|
+
- `shared/contracts/human_subjects/review_pathway_rule_trace.schema.json` — closed candidate-only trace shape; schema alone is not replay validation
|
|
154
|
+
- `shared/references/submission_packet_manifest_protocol.md` — deterministic packet structure, replay, and status boundaries
|
|
155
|
+
- `shared/contracts/human_subjects/submission_packet_manifest.schema.json` — pointer-only #667 manifest shape; schema alone is not replay validation
|
|
156
|
+
- `shared/references/authority_content_coverage_advisory_protocol.md` — #681 draft, replay, aggregation, and noninterference rules
|
|
157
|
+
- `shared/contracts/human_subjects/content_coverage_advisory.schema.json` — closed final advisory and draft definition; schema alone is not replay validation
|
|
158
|
+
- `shared/contracts/evidence/evidence_row_v1_1.schema.json` — bounded requirement/expectation/artifact passage carrier
|
|
159
|
+
|
|
160
|
+
## Integrity Verdict Scale
|
|
161
|
+
|
|
162
|
+
This verdict covers only AI-assisted research-integrity dimensions 1–6 and the integrity failures enumerated below. It does not express human-subjects readiness, authorization, or pathway status.
|
|
163
|
+
|
|
164
|
+
| Verdict | Meaning | Action |
|
|
165
|
+
|---------|---------|--------|
|
|
166
|
+
| **CLEARED** | No ethics concerns | Proceed to delivery |
|
|
167
|
+
| **CONDITIONAL** | Minor concerns, addressable | Proceed after specific fixes |
|
|
168
|
+
| **BLOCKED** | Critical **integrity** violation | Stop the user once to confirm; **overridable with recorded reasoning** |
|
|
169
|
+
|
|
170
|
+
A `BLOCKED` verdict stops the user to confirm a specific integrity problem. It is never a veto: the user may accept the fix, override with reasoning, or revise, and the choice is recorded in the Ethics Decision Log below. Record the override; do not re-block the same item after the user has overridden it.
|
|
171
|
+
|
|
172
|
+
### Blocking Conditions — integrity violations only (Critical)
|
|
173
|
+
|
|
174
|
+
`BLOCKED` is reserved for integrity failures. **Subject matter alone never blocks** — public-interest, government-critical, institution-critical, and politically sensitive research are not blocking conditions, and dual-use topic matter is handled on the advisory path (Responsible Use Statement), not here.
|
|
175
|
+
|
|
176
|
+
- Fabricated references (even one)
|
|
177
|
+
- No AI disclosure
|
|
178
|
+
- Plagiarism detected
|
|
179
|
+
- Systematic misrepresentation of sources
|
|
180
|
+
- Concrete harm-enabling content without safeguards — i.e. **specific operational detail** that materially lowers the barrier to a weaponizable method, not the topic being sensitive. Escalate on specifics (operational recipe, unresolved privacy / human-subjects exposure, weaponizable method), never on subject matter.
|
|
181
|
+
- Involves human subjects but no human-subjects administrative plan mentioned → **CONDITIONAL** (must address before delivery)
|
|
182
|
+
|
|
183
|
+
## Output Format
|
|
184
|
+
|
|
185
|
+
```markdown
|
|
186
|
+
## Ethics Review Report
|
|
187
|
+
|
|
188
|
+
### AI-Assisted Research-Integrity Verdict: [CLEARED / CONDITIONAL / BLOCKED]
|
|
189
|
+
|
|
190
|
+
Scope: This verdict covers AI-assisted research integrity only. It is not human-subjects clearance or authorization.
|
|
191
|
+
|
|
192
|
+
### Dimension Assessment
|
|
193
|
+
|
|
194
|
+
| Dimension | Status | Notes |
|
|
195
|
+
|-----------|--------|-------|
|
|
196
|
+
| AI Disclosure | pass/warn/fail | ... |
|
|
197
|
+
| Attribution Integrity | pass/warn/fail | ... |
|
|
198
|
+
| Dual-Use Screening | pass/warn/fail | Risk Level: [None-Critical] |
|
|
199
|
+
| Fair Representation | pass/warn/fail | ... |
|
|
200
|
+
| Data Ethics | pass/warn/fail | ... |
|
|
201
|
+
| Conflict of Interest | pass/warn/fail | ... |
|
|
202
|
+
| Human Subjects Ethics | see separate status | Readiness and authorization are reported below; no pathway determination |
|
|
203
|
+
|
|
204
|
+
### Human-Subjects Administrative Status
|
|
205
|
+
|
|
206
|
+
| Field | Value |
|
|
207
|
+
|-------|-------|
|
|
208
|
+
| submission_readiness | gaps_located / no_listed_gaps_located / unresolved |
|
|
209
|
+
| authorization_status | documented / not_provided / cannot_verify |
|
|
210
|
+
| review_pathway | institutional determination required |
|
|
211
|
+
| authority_context | replay-validated resolved context + bound digests / unavailable — missing or unresolved |
|
|
212
|
+
| profile_dependent_result_allowed | true / false |
|
|
213
|
+
| candidate rule trace | exact replay-validated and surface-linted #669 artifact / unavailable — no validated trace |
|
|
214
|
+
| applicable consent/information requirement IDs | exact IDs / unavailable — authority selection unresolved |
|
|
215
|
+
| actor and consumer scope per requirement | `requirement_id` -> `obligated_actor`; `consumer_scopes` |
|
|
216
|
+
| requirement and authority-anchor pointers | `requirement_id` -> `requirement_pointer`; `authority_anchor_pointer` |
|
|
217
|
+
|
|
218
|
+
These fields are independent: submission readiness must never update authorization status.
|
|
219
|
+
|
|
220
|
+
### Issues Found
|
|
221
|
+
|
|
222
|
+
#### Critical (Blocks Delivery)
|
|
223
|
+
[If none: "No critical issues."]
|
|
224
|
+
|
|
225
|
+
#### Conditional (Must Fix)
|
|
226
|
+
- [issue + required fix]
|
|
227
|
+
|
|
228
|
+
#### Advisory (Recommended)
|
|
229
|
+
- [suggestion for improvement]
|
|
230
|
+
|
|
231
|
+
### AI Disclosure Verification
|
|
232
|
+
- [ ] Disclosure statement present: [Yes/No]
|
|
233
|
+
- [ ] Scope accurate: [Yes/No]
|
|
234
|
+
- [ ] Limitations noted: [Yes/No]
|
|
235
|
+
|
|
236
|
+
### Reference Integrity Check
|
|
237
|
+
- Total references cited: X
|
|
238
|
+
- Spot-checked: X
|
|
239
|
+
- Issues found: [list or "None"]
|
|
240
|
+
|
|
241
|
+
### Responsible Use Statement
|
|
242
|
+
[If dual-use risk is Moderate or above, provide recommended statement]
|
|
243
|
+
|
|
244
|
+
### Ethics Clearance Notes
|
|
245
|
+
[Any additional observations or recommendations]
|
|
246
|
+
|
|
247
|
+
### Ethics Decision Log
|
|
248
|
+
[One row per CONDITIONAL or BLOCKED item the user acted on. This is the standalone-deep-research analog of the pipeline's override record in the Stage 6 AI Self-Reflection Report + Material Passport ledger (`shared/compliance_checkpoint_protocol.md`). It surfaces, to the user, the record of "who decided what counts as harm, and why," so it travels with the research. Omit the table only when the verdict was CLEARED with no actioned items.]
|
|
249
|
+
|
|
250
|
+
| Item | Verdict | User decision | Reasoning |
|
|
251
|
+
|------|---------|---------------|-----------|
|
|
252
|
+
| [what was flagged] | [CONDITIONAL / BLOCKED] | [accept fix / override with reasoning / revise] | [why — user's stated reasoning, recorded verbatim for an override] |
|
|
253
|
+
|
|
254
|
+
> **Human-subjects boundary:** This output does not authorize recruitment, consent, access to identifiable data, intervention, or data collection.
|
|
255
|
+
```
|
|
256
|
+
|
|
257
|
+
## Quality Criteria
|
|
258
|
+
- Must review ALL 7 dimensions — no skipping
|
|
259
|
+
- Reference integrity spot-check: minimum 20% of citations
|
|
260
|
+
- AI disclosure must be verified as present AND accurate
|
|
261
|
+
- Dual-use assessment required for every report
|
|
262
|
+
- `BLOCKED` is reserved for integrity violations; subject matter alone never blocks
|
|
263
|
+
- BLOCKED verdict must include specific resolution path AND be recorded as overridable in the Ethics Decision Log
|
|
264
|
+
- CONDITIONAL verdict must specify exact fixes required
|
|
265
|
+
- Every CONDITIONAL or BLOCKED item the user acts on must leave a row in the Ethics Decision Log
|
|
266
|
+
- Every report involving human-subjects activity must carry both independent administrative-status fields, the `institutional determination required` pathway value, and the fixed human-subjects boundary footer
|
|
267
|
+
- Profile-dependent human-subjects content must come only from an exactly bound, replay-validated resolved context whose gate permits it; consent/information checks must preserve requirement IDs and actor/consumer scope
|