psyclaw 0.27.23 → 0.28.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +11 -5
- package/agents/recommended/catalog.json +99 -0
- package/dist/apps/panel/index.html +5 -5
- package/dist/src/adapters/pi/extension.js +339 -94
- package/dist/src/adapters/pi/extension.js.map +1 -1
- package/dist/src/adapters/pi/rpc.d.ts +2 -0
- package/dist/src/adapters/pi/rpc.js +9 -2
- package/dist/src/adapters/pi/rpc.js.map +1 -1
- package/dist/src/agents/import.js +44 -32
- package/dist/src/agents/import.js.map +1 -1
- package/dist/src/agents/recommended-personas.d.ts +42 -0
- package/dist/src/agents/recommended-personas.js +135 -0
- package/dist/src/agents/recommended-personas.js.map +1 -0
- package/dist/src/analysis/hooks.d.ts +1 -0
- package/dist/src/analysis/hooks.js +20 -1
- package/dist/src/analysis/hooks.js.map +1 -1
- package/dist/src/ars/bridge.d.ts +20 -0
- package/dist/src/ars/bridge.js +132 -0
- package/dist/src/ars/bridge.js.map +1 -0
- package/dist/src/ars/contracts.d.ts +55 -0
- package/dist/src/ars/contracts.js +2 -0
- package/dist/src/ars/contracts.js.map +1 -0
- package/dist/src/ars/panel-plan.d.ts +4 -0
- package/dist/src/ars/panel-plan.js +11 -0
- package/dist/src/ars/panel-plan.js.map +1 -0
- package/dist/src/ars/pi-panel-executor.d.ts +30 -0
- package/dist/src/ars/pi-panel-executor.js +140 -0
- package/dist/src/ars/pi-panel-executor.js.map +1 -0
- package/dist/src/ars/profile.d.ts +36 -0
- package/dist/src/ars/profile.js +119 -0
- package/dist/src/ars/profile.js.map +1 -0
- package/dist/src/ars/re-review.d.ts +22 -0
- package/dist/src/ars/re-review.js +172 -0
- package/dist/src/ars/re-review.js.map +1 -0
- package/dist/src/branding.d.ts +2 -4
- package/dist/src/branding.js +3 -5
- package/dist/src/branding.js.map +1 -1
- package/dist/src/bundled-tools.d.ts +3 -0
- package/dist/src/bundled-tools.js +21 -0
- package/dist/src/bundled-tools.js.map +1 -0
- package/dist/src/chat.js +6 -5
- package/dist/src/chat.js.map +1 -1
- package/dist/src/cli.js +6 -3
- package/dist/src/cli.js.map +1 -1
- package/dist/src/creation/contracts.d.ts +41 -0
- package/dist/src/creation/contracts.js +2 -0
- package/dist/src/creation/contracts.js.map +1 -0
- package/dist/src/creation/service.d.ts +7 -0
- package/dist/src/creation/service.js +208 -0
- package/dist/src/creation/service.js.map +1 -0
- package/dist/src/index.d.ts +11 -0
- package/dist/src/index.js +11 -0
- package/dist/src/index.js.map +1 -1
- package/dist/src/install/installer.js +32 -10
- package/dist/src/install/installer.js.map +1 -1
- package/dist/src/orchestration/bundled-personas.d.ts +16 -0
- package/dist/src/orchestration/bundled-personas.js +101 -0
- package/dist/src/orchestration/bundled-personas.js.map +1 -0
- package/dist/src/orchestration/effects.d.ts +8 -0
- package/dist/src/orchestration/effects.js +39 -0
- package/dist/src/orchestration/effects.js.map +1 -0
- package/dist/src/orchestration/personas.d.ts +16 -0
- package/dist/src/orchestration/personas.js +64 -0
- package/dist/src/orchestration/personas.js.map +1 -0
- package/dist/src/orchestration/pi-executor.d.ts +9 -4
- package/dist/src/orchestration/pi-executor.js +55 -22
- package/dist/src/orchestration/pi-executor.js.map +1 -1
- package/dist/src/orchestration/research-agents.d.ts +3 -7
- package/dist/src/orchestration/research-agents.js +5 -69
- package/dist/src/orchestration/research-agents.js.map +1 -1
- package/dist/src/panel/server.js +19 -4
- package/dist/src/panel/server.js.map +1 -1
- package/dist/src/project/paths.d.ts +3 -0
- package/dist/src/project/paths.js +7 -0
- package/dist/src/project/paths.js.map +1 -1
- package/dist/src/rules/user-rules.d.ts +8 -0
- package/dist/src/rules/user-rules.js +36 -0
- package/dist/src/rules/user-rules.js.map +1 -0
- package/dist/src/skills/contracts.d.ts +4 -4
- package/dist/src/skills/recommended.js +1 -1
- package/dist/src/skills/registry.js +49 -28
- package/dist/src/skills/registry.js.map +1 -1
- package/dist/src/style/cli-ui.d.ts +14 -0
- package/dist/src/style/cli-ui.js +45 -1
- package/dist/src/style/cli-ui.js.map +1 -1
- package/dist/src/tui/skill-manager.js +1 -1
- package/dist/src/tui/skill-manager.js.map +1 -1
- package/dist/src/updates/update.js +9 -3
- package/dist/src/updates/update.js.map +1 -1
- package/package.json +15 -3
- package/scripts/rebrand-pi.mjs +6 -0
- package/skills/recommended/catalog.json +2 -11
- package/vendor/ars/.claude/CLAUDE.md +371 -0
- package/vendor/ars/.command-invariants.toml +24 -0
- package/vendor/ars/CITATION.cff +35 -0
- package/vendor/ars/LICENSE +417 -0
- package/vendor/ars/MODE_REGISTRY.md +76 -0
- package/vendor/ars/NOTICE.md +26 -0
- package/vendor/ars/POSITIONING.md +99 -0
- package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
- package/vendor/ars/README.md +751 -0
- package/vendor/ars/SECURITY.md +52 -0
- package/vendor/ars/THIRD_PARTY.md +70 -0
- package/vendor/ars/academic-paper/SKILL.md +542 -0
- package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
- package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
- package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
- package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
- package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
- package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
- package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
- package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
- package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
- package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
- package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
- package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
- package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
- package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
- package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
- package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
- package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
- package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
- package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
- package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
- package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
- package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
- package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
- package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
- package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
- package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
- package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
- package/vendor/ars/academic-paper/references/changelog.md +11 -0
- package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
- package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
- package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
- package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
- package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
- package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
- package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
- package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
- package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
- package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
- package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
- package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
- package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
- package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
- package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
- package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
- package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
- package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
- package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
- package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
- package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
- package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
- package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
- package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
- package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
- package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
- package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
- package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
- package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
- package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
- package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
- package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
- package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
- package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
- package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
- package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
- package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
- package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
- package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
- package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
- package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
- package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
- package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
- package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
- package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
- package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
- package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
- package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
- package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
- package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
- package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
- package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
- package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
- package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
- package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
- package/vendor/ars/academic-paper-reviewer/references/reviewer_sprint_prompt_source.md +324 -0
- package/vendor/ars/academic-paper-reviewer/references/sprint_contract_protocol.md +296 -0
- package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
- package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
- package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
- package/vendor/ars/academic-paper-reviewer/templates/peer_review_report_template.md +305 -0
- package/vendor/ars/academic-paper-reviewer/templates/revision_response_template.md +248 -0
- package/vendor/ars/academic-pipeline/SKILL.md +736 -0
- package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
- package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
- package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
- package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
- package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
- package/vendor/ars/academic-pipeline/examples/full_pipeline_example.md +482 -0
- package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
- package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
- package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
- package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
- package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
- package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
- package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
- package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
- package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
- package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
- package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
- package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
- package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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- package/vendor/ars/academic-pipeline/references/plagiarism_detection_protocol.md +239 -0
- package/vendor/ars/academic-pipeline/references/process_summary_protocol.md +209 -0
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- package/vendor/ars/academic-pipeline/references/reinforcement_content.md +15 -0
- package/vendor/ars/academic-pipeline/references/reproducibility_audit.md +55 -0
- package/vendor/ars/academic-pipeline/references/score_trajectory_protocol.md +78 -0
- package/vendor/ars/academic-pipeline/references/team_collaboration_protocol.md +261 -0
- package/vendor/ars/academic-pipeline/references/two_stage_review_protocol.md +27 -0
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- package/vendor/ars/agents/report_compiler_agent.md +341 -0
- package/vendor/ars/agents/research_architect_agent.md +298 -0
- package/vendor/ars/agents/synthesis_agent.md +356 -0
- package/vendor/ars/commands/ars-3w.md +10 -0
- package/vendor/ars/commands/ars-abstract.md +10 -0
- package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
- package/vendor/ars/commands/ars-citation-check.md +10 -0
- package/vendor/ars/commands/ars-disclosure.md +10 -0
- package/vendor/ars/commands/ars-format-convert.md +10 -0
- package/vendor/ars/commands/ars-full.md +9 -0
- package/vendor/ars/commands/ars-lit-review.md +12 -0
- package/vendor/ars/commands/ars-mark-read.md +18 -0
- package/vendor/ars/commands/ars-outline.md +10 -0
- package/vendor/ars/commands/ars-plan.md +10 -0
- package/vendor/ars/commands/ars-rebuttal-audit.md +12 -0
- package/vendor/ars/commands/ars-reviewer.md +9 -0
- package/vendor/ars/commands/ars-revision-coach.md +9 -0
- package/vendor/ars/commands/ars-revision.md +10 -0
- package/vendor/ars/commands/ars-unmark-read.md +16 -0
- package/vendor/ars/deep-research/SKILL.md +600 -0
- package/vendor/ars/deep-research/agents/bibliography_agent.md +473 -0
- package/vendor/ars/deep-research/agents/devils_advocate_agent.md +192 -0
- package/vendor/ars/deep-research/agents/editor_in_chief_agent.md +167 -0
- package/vendor/ars/deep-research/agents/ethics_review_agent.md +267 -0
- package/vendor/ars/deep-research/agents/meta_analysis_agent.md +325 -0
- package/vendor/ars/deep-research/agents/monitoring_agent.md +209 -0
- package/vendor/ars/deep-research/agents/report_compiler_agent.md +341 -0
- package/vendor/ars/deep-research/agents/research_architect_agent.md +298 -0
- package/vendor/ars/deep-research/agents/research_question_agent.md +216 -0
- package/vendor/ars/deep-research/agents/risk_of_bias_agent.md +231 -0
- package/vendor/ars/deep-research/agents/socratic_mentor_agent.md +764 -0
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- package/vendor/ars/pi/wrapper.test.mjs +201 -0
- package/vendor/ars/pyproject.toml +2 -0
- package/vendor/ars/requirements-pdf-content-classifier.txt +5 -0
- package/vendor/ars/scripts/_block_parser.py +396 -0
- package/vendor/ars/scripts/_ci_pytest_manifest.toml +661 -0
- package/vendor/ars/scripts/_claim_audit_constants.py +268 -0
- package/vendor/ars/scripts/_e4_evidence.py +110 -0
- package/vendor/ars/scripts/_eval_threshold_gate.py +73 -0
- package/vendor/ars/scripts/_markdown_lint_util.py +224 -0
- package/vendor/ars/scripts/_next_verified_at_ms.py +176 -0
- package/vendor/ars/scripts/_passport_yaml.py +53 -0
- package/vendor/ars/scripts/_skill_lint.py +254 -0
- package/vendor/ars/scripts/_text_similarity.py +141 -0
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I've already written an English paper titled "Machine Learning Approaches for
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Predicting University Attrition Risk in Taiwan," approximately 7,000 words.
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I'd like a simulated review before submitting.
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---
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Entering Stage 3 (REVIEW) -- using academic-paper-reviewer quick mode
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Loading academic-paper-reviewer SKILL.md...
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Receiving user-provided paper draft...
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field_analyst_agent analyzing paper domain...
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Paper domain: Educational Data Mining / Higher Education
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Method type: Machine Learning (Supervised Classification)
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Computers & Education Associate Editor
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Specialization: Learning Analytics, Educational AI
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Overall: Promising but needs work (Minor-to-Major Revision range)
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in Taiwan's demographic context
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institutional records is novel
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is well-structured
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Key Concerns (top 3):
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C1: [CRITICAL] Ethical considerations section is missing.
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C&E requires explicit discussion of algorithmic fairness,
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student privacy, and potential discriminatory outcomes.
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C2: [MAJOR] Model interpretability not discussed.
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C&E reviewers expect SHAP values or similar explainability
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analysis, not just accuracy metrics.
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C3: [MAJOR] Literature gap -- no mention of Dropout Factory
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literature (Balfanz & Legters, 2004) or recent European
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attrition studies. Too Taiwan-centric for an international
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journal.
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116
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Quick Verdict: Major Revision
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Before full submission, address C1-C3.
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Estimated revision effort: 2-3 weeks.
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```
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**Stage 3 Deliverables:**
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- Journal-Fit Reviewer Quick Assessment Report
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+
- 3 key issues list (priority sorted)
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+
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+
---
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+
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### Orchestrator: Transition Recommendation
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+
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129
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+
```
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Stage 3 (REVIEW) quick mode Complete!
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Review result: Major Revision direction
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C1: [CRITICAL] Missing ethics discussion (hard requirement for C&E)
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C2: [MAJOR] Missing model interpretability analysis
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C3: [MAJOR] Literature review lacks international perspective
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+
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137
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+
This is the quick review result. You have several options:
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+
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+
a) Proceed directly to Stage 4 (REVISE) to address these 3 issues
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b) Upgrade to full review (complete five-seat review),
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to see if there are other issues
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c) Revise on your own first, come back when done
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+
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My recommendation: Since you're targeting C&E (Q1 journal),
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fix C1-C3 first, then do a full review to ensure quality.
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+
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Which do you choose?
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+
```
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**User**: Fix C1-C3 first, then do full review.
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### Orchestrator: Update Configuration
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```
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OK, updating pipeline:
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Stage 3 REVIEW (quick): [v] Completed
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Stage 4 REVISE: [..] Next -- fix C1-C3
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Stage 3' RE-REVIEW: full mode -- full review after revision
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Stage 5 FINALIZE: TBD
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+
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+
Start Stage 4 (REVISE)?
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+
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Progress: [--]Research -> [--]Writing -> [v]Review -> [..]Revision -> [ ]Re-review -> [ ]Finalization
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```
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**User**: Start revision.
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+
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---
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+
### Stage 4: REVISE (revision mode, Round 1)
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+
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```
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Entering Stage 4 (REVISE) -- using academic-paper revision mode
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+
Loading academic-paper SKILL.md (revision mode)...
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Passing Paper Draft + Quick Assessment Report...
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```
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**Revision Progress Tracking:**
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```
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C1: [v] Added Ethics & Fairness section (Section 5.3)
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- Algorithmic fairness analysis (demographic parity, equalized odds)
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- Student privacy framework (FERPA-equivalent for Taiwan)
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- Potential discriminatory outcomes discussion
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- Added 5 citations on AI ethics in education
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C2: [v] Added Model Interpretability analysis (Section 4.3)
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- SHAP value analysis for top 20 features
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- Feature importance comparison across 3 models
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- Case study: 3 individual prediction explanations
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- Added SHAP visualization figures
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+
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C3: [v] Expanded Literature Review (Section 2)
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+
- Added Dropout Factory framework (Balfanz & Legters)
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- Added 6 European attrition studies (2020-2026)
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- Added cross-cultural comparison discussion
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- Restructured into 3 sub-sections: global -> Asia -> Taiwan
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+
```
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**Stage 4 Deliverables:**
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- Revised Draft (9,200 words, 2,200 words more than original)
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+
- Response to Reviewers (R-A-C format, 3 items all addressed)
|
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+
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+
---
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206
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+
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+
### Orchestrator: Stage 4 --> 3' Transition
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+
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|
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```
|
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Stage 4 (REVISE) Complete!
|
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+
|
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Revision results:
|
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+
- 3/3 issues all addressed
|
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214
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+
- Paper expanded from 7,000 to 9,200 words
|
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215
|
+
- Added Ethics section, SHAP analysis, international literature
|
|
216
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+
- Added 11 new citations
|
|
217
|
+
|
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218
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+
Next step is Stage 3' (RE-REVIEW) -- this time using a user-requested fresh full review,
|
|
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|
+
not the contract-governed verification re-review. Five role-separated seats will
|
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220
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+
review the revised version (four configured identities plus the fixed Devil's Advocate).
|
|
221
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+
This is revision cycle 1 (max 2 cycles).
|
|
222
|
+
|
|
223
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+
Submit for full review?
|
|
224
|
+
|
|
225
|
+
Progress: [--]Research -> [--]Writing -> [v]Review -> [v]Revision -> [..]Re-review -> [ ]Finalization
|
|
226
|
+
```
|
|
227
|
+
|
|
228
|
+
**User**: Submit.
|
|
229
|
+
|
|
230
|
+
---
|
|
231
|
+
|
|
232
|
+
### Stage 3': RE-REVIEW (full mode, Loop 1)
|
|
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|
+
|
|
234
|
+
```
|
|
235
|
+
Entering Stage 3' (RE-REVIEW) -- full mode, Loop 1/2
|
|
236
|
+
|
|
237
|
+
Loading academic-paper-reviewer SKILL.md (full mode)...
|
|
238
|
+
Passing Revised Draft + Response to Reviewers + Editorial Decision Letter (#539 Judge Record input)...
|
|
239
|
+
field_analyst_agent analyzing (legitimate here: the user requested a NEW full review
|
|
240
|
+
of the revised version — a fresh review, not a verification re-review — and full mode
|
|
241
|
+
runs field_analyst by definition; Round 1 was an ARS quick assessment. The yardstick
|
|
242
|
+
freeze in re_review_mode_protocol.md § Yardstick Continuity governs re-review mode only)...
|
|
243
|
+
```
|
|
244
|
+
|
|
245
|
+
**Reviewer Configuration:**
|
|
246
|
+
```
|
|
247
|
+
Journal-Fit Reviewer (serialized source ID EIC):
|
|
248
|
+
Computers & Education Associate Editor
|
|
249
|
+
Educational AI, Learning Analytics
|
|
250
|
+
Reviewer 1: Machine Learning expert
|
|
251
|
+
Predictive modeling, Model evaluation
|
|
252
|
+
Reviewer 2: Higher Education researcher
|
|
253
|
+
Student success, Retention strategies
|
|
254
|
+
Reviewer 3: Research Ethics / Data Science ethicist
|
|
255
|
+
Algorithmic fairness, Educational data mining ethics
|
|
256
|
+
Fixed seat: Devil's Advocate
|
|
257
|
+
Core-argument stress test, strongest counter-explanations
|
|
258
|
+
```
|
|
259
|
+
|
|
260
|
+
**5 Review Reports Compiled:**
|
|
261
|
+
|
|
262
|
+
```
|
|
263
|
+
Journal-Fit Reviewer: Minor Revision
|
|
264
|
+
- C1 response adequate, Ethics section well-structured
|
|
265
|
+
- Recommend updating Abstract to reflect new ethics + interpretability contributions
|
|
266
|
+
- Recommend adding a Practical Implications section for university administrators
|
|
267
|
+
|
|
268
|
+
Reviewer 1: Accept
|
|
269
|
+
- SHAP analysis thorough and insightful
|
|
270
|
+
- Model comparison fair and well-documented
|
|
271
|
+
- Minor: Table 3 precision/recall should include confidence intervals
|
|
272
|
+
|
|
273
|
+
Reviewer 2: Minor Revision
|
|
274
|
+
- International literature coverage greatly improved
|
|
275
|
+
- Recommend Discussion add dialogue with Tinto's Student Integration Model
|
|
276
|
+
- Minor: Section 2.1 citation Chen (2023) should be Chen (2024)
|
|
277
|
+
|
|
278
|
+
Reviewer 3: Accept
|
|
279
|
+
- Ethics section quality is high, exceeding typical C&E standards
|
|
280
|
+
- Algorithmic fairness metrics well-chosen
|
|
281
|
+
- Recommend adding a "limitations of fairness metrics" reflection paragraph
|
|
282
|
+
|
|
283
|
+
Devil's Advocate: No unresolved Critical challenge
|
|
284
|
+
- Fairness metrics still rely on contested group definitions
|
|
285
|
+
- Preserve this limitation explicitly rather than presenting the metrics as complete
|
|
286
|
+
```
|
|
287
|
+
|
|
288
|
+
**Editorial Decision: Minor Revision (Accept direction)**
|
|
289
|
+
|
|
290
|
+
```
|
|
291
|
+
Required Revisions:
|
|
292
|
+
R1: Update Abstract (reflect new contributions)
|
|
293
|
+
R2: Add Practical Implications section
|
|
294
|
+
|
|
295
|
+
Suggested Revisions:
|
|
296
|
+
S1: Table 3 add confidence intervals
|
|
297
|
+
S2: Discussion add Tinto's model dialogue
|
|
298
|
+
S3: Fix Chen (2023) -> Chen (2024) citation year
|
|
299
|
+
S4: Add fairness metrics limitations paragraph
|
|
300
|
+
```
|
|
301
|
+
|
|
302
|
+
---
|
|
303
|
+
|
|
304
|
+
### Orchestrator: Quick Revision + FINALIZE
|
|
305
|
+
|
|
306
|
+
```
|
|
307
|
+
Stage 3' (RE-REVIEW) Complete!
|
|
308
|
+
|
|
309
|
+
Review result: Minor Revision (Accept direction)
|
|
310
|
+
- Among the 4 non-DA scoring reviewers: 2 Accept + 2 Minor Revision
|
|
311
|
+
- The fixed Devil's Advocate raised no unresolved Critical challenge
|
|
312
|
+
- 2 required items (Abstract update + Practical Implications)
|
|
313
|
+
- 4 suggested modifications
|
|
314
|
+
|
|
315
|
+
These are all minor changes that can be handled during Stage 5 (FINALIZE).
|
|
316
|
+
Or would you prefer a formal Stage 4 revision before another review?
|
|
317
|
+
|
|
318
|
+
My recommendation: Since all items are minor, proceed directly to Stage 5 and handle them together.
|
|
319
|
+
|
|
320
|
+
What format do you need?
|
|
321
|
+
a) LaTeX (.tex + .bib) -- suitable for C&E submission
|
|
322
|
+
b) Other formats
|
|
323
|
+
|
|
324
|
+
Progress: [--]Research -> [--]Writing -> [v]Review -> [v]Revision -> [v]Re-review -> [..]Finalization
|
|
325
|
+
```
|
|
326
|
+
|
|
327
|
+
**User**: Go straight to finalize, LaTeX format.
|
|
328
|
+
|
|
329
|
+
---
|
|
330
|
+
|
|
331
|
+
### Stage 5: FINALIZE (format-convert mode)
|
|
332
|
+
|
|
333
|
+
```
|
|
334
|
+
Entering Stage 5 (FINALIZE) -- format-convert mode
|
|
335
|
+
|
|
336
|
+
Simultaneously handling minor revision items:
|
|
337
|
+
R1: [v] Abstract updated
|
|
338
|
+
R2: [v] Added Practical Implications section (200 words)
|
|
339
|
+
S1: [v] Table 3 confidence intervals added
|
|
340
|
+
S2: [v] Discussion Tinto's model paragraph added
|
|
341
|
+
S3: [v] Chen citation year corrected
|
|
342
|
+
S4: [v] Fairness metrics limitations paragraph added
|
|
343
|
+
|
|
344
|
+
formatter_agent executing LaTeX conversion...
|
|
345
|
+
- Using Elsevier article template (C&E format)
|
|
346
|
+
- Producing .tex + .bib + figures/
|
|
347
|
+
- Producing cover letter draft
|
|
348
|
+
```
|
|
349
|
+
|
|
350
|
+
**Stage 5 Deliverables:**
|
|
351
|
+
- `ml_university_attrition_taiwan.tex` (LaTeX main text)
|
|
352
|
+
- `references.bib` (BibTeX file)
|
|
353
|
+
- `figures/` (all figures and tables)
|
|
354
|
+
- `cover_letter.tex` (submission cover letter draft)
|
|
355
|
+
|
|
356
|
+
---
|
|
357
|
+
|
|
358
|
+
### Orchestrator: Pipeline Complete
|
|
359
|
+
|
|
360
|
+
```
|
|
361
|
+
+=========================================+
|
|
362
|
+
| Academic Pipeline Status |
|
|
363
|
+
+=========================================+
|
|
364
|
+
| Topic: ML Approaches for Predicting |
|
|
365
|
+
| University Attrition Risk |
|
|
366
|
+
+-----------------------------------------+
|
|
367
|
+
|
|
368
|
+
Stage 1 RESEARCH [--] Skipped
|
|
369
|
+
Stage 2 WRITE [--] Skipped
|
|
370
|
+
Stage 3 REVIEW [v] Completed
|
|
371
|
+
Mode: quick
|
|
372
|
+
Decision: Major Revision (3 items)
|
|
373
|
+
Stage 4 REVISE [v] Completed
|
|
374
|
+
Round: 1, Addressed: 3/3
|
|
375
|
+
Stage 3' RE-REVIEW [v] Completed
|
|
376
|
+
Mode: full, Loop: 1/2
|
|
377
|
+
Decision: Minor Revision (Accept)
|
|
378
|
+
Stage 5 FINALIZE [v] Completed
|
|
379
|
+
Format: LaTeX (Elsevier)
|
|
380
|
+
|
|
381
|
+
+-----------------------------------------+
|
|
382
|
+
| Materials: |
|
|
383
|
+
| [--] RQ Brief (skipped) |
|
|
384
|
+
| [--] Methodology (skipped) |
|
|
385
|
+
| [--] Bibliography (skipped) |
|
|
386
|
+
| [--] Synthesis (skipped) |
|
|
387
|
+
| [v] Paper Draft (user-provided) |
|
|
388
|
+
| [v] Review Reports (quick + full) |
|
|
389
|
+
| [v] Revision Roadmap |
|
|
390
|
+
| [v] Revised Draft (9,500 words) |
|
|
391
|
+
| [v] Response to Reviewers |
|
|
392
|
+
| [v] Final Paper (LaTeX) |
|
|
393
|
+
+-----------------------------------------+
|
|
394
|
+
| Revision History: |
|
|
395
|
+
| Round 1: Major -> 3/3 addressed |
|
|
396
|
+
| RE-REVIEW: Minor (Accept direction) |
|
|
397
|
+
| Final minor fixes in FINALIZE |
|
|
398
|
+
+-----------------------------------------+
|
|
399
|
+
| Pipeline Complete! |
|
|
400
|
+
+=========================================+
|
|
401
|
+
|
|
402
|
+
Your paper is ready for submission to Computers & Education.
|
|
403
|
+
|
|
404
|
+
Final deliverables:
|
|
405
|
+
1. ml_university_attrition_taiwan.tex (main text)
|
|
406
|
+
2. references.bib (citations)
|
|
407
|
+
3. figures/ (figures and tables)
|
|
408
|
+
4. cover_letter.tex (submission cover letter draft)
|
|
409
|
+
|
|
410
|
+
Pre-submission recommendations:
|
|
411
|
+
- Read through the cover letter one more time, adjust to your tone
|
|
412
|
+
- Confirm C&E Author Guidelines for any additional formatting requirements
|
|
413
|
+
- Prepare Highlights (3-5 bullet points) and Graphical Abstract
|
|
414
|
+
```
|
|
File without changes
|
|
@@ -0,0 +1,153 @@
|
|
|
1
|
+
# Adapter Contract — Producing `literature_corpus[]` Entries
|
|
2
|
+
|
|
3
|
+
**Status**: Stable as of ARS v3.6.4
|
|
4
|
+
**Applies to**: any adapter that produces a Material Passport `literature_corpus[]` field
|
|
5
|
+
**Authoritative schemas**:
|
|
6
|
+
- [`shared/contracts/passport/literature_corpus_entry.schema.json`](../../../shared/contracts/passport/literature_corpus_entry.schema.json)
|
|
7
|
+
- [`shared/contracts/passport/rejection_log.schema.json`](../../../shared/contracts/passport/rejection_log.schema.json)
|
|
8
|
+
|
|
9
|
+
## 1. What an adapter is
|
|
10
|
+
|
|
11
|
+
An **adapter** is a program (in any language) that reads a user-owned corpus source — a Zotero export, an Obsidian vault, a folder of PDFs, a Notion database, a custom SQLite library — and produces:
|
|
12
|
+
|
|
13
|
+
1. **`passport.yaml`** with a top-level `literature_corpus` array conforming to `literature_corpus_entry.schema.json`.
|
|
14
|
+
2. **`rejection_log.yaml`** conforming to `rejection_log.schema.json`, always emitted (empty when no rejections).
|
|
15
|
+
|
|
16
|
+
ARS provides three Python reference adapters in [`scripts/adapters/`](../../../scripts/adapters/). Users are expected to write their own adapters for non-reference sources. The three reference adapters are starting points, not production tools.
|
|
17
|
+
|
|
18
|
+
## 2. Why a contract, not a plugin API
|
|
19
|
+
|
|
20
|
+
ARS deliberately does NOT run adapter code itself. The adapter runs in the user's environment, reads the user's data, and emits YAML files. ARS reads those YAML files. Rationale:
|
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21
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+
|
|
22
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+
- Each corpus source (Zotero, Obsidian, custom) has its own versioning, auth, and data quirks. Pinning one plugin API would force ARS to track all of them.
|
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23
|
+
- Keeping the boundary at "YAML files on disk" means a user can use any language, any scheduling mechanism, and any privacy posture without touching ARS internals.
|
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24
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+
- ARS remains a writing/review-layer tool; corpus integration stays in user-owned code.
|
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25
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+
|
|
26
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+
## 3. Entry field reference
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27
|
+
|
|
28
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+
Refer to the [`literature_corpus_entry` schema](../../../shared/contracts/passport/literature_corpus_entry.schema.json) for the authoritative contract. The field tables below are generated from that schema and must not drift.
|
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29
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+
|
|
30
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+
<!-- GENERATED:LITERATURE_CORPUS_REQUIRED:START -->
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|
31
|
+
| Field | Type | Description (first sentence) |
|
|
32
|
+
|---|---|---|
|
|
33
|
+
| `authors` | array | CSL-JSON name format. |
|
|
34
|
+
| `citation_key` | string | Stable unique identifier for this entry within the passport. |
|
|
35
|
+
| `source_pointer` | string | Stable URI locating this work in the user's own KB. |
|
|
36
|
+
| `title` | string | — |
|
|
37
|
+
| `year` | integer | Publication year. |
|
|
38
|
+
<!-- GENERATED:LITERATURE_CORPUS_REQUIRED:END -->
|
|
39
|
+
|
|
40
|
+
<!-- GENERATED:LITERATURE_CORPUS_OPTIONAL:START -->
|
|
41
|
+
| Field | Type | Description (first sentence) |
|
|
42
|
+
|---|---|---|
|
|
43
|
+
| `abstract` | string | PRIVATE FIELD. |
|
|
44
|
+
| `adapter_name` | string | Optional. |
|
|
45
|
+
| `adapter_version` | string | — |
|
|
46
|
+
| `arxiv_id` | string | Optional arXiv identifier for arXiv-hosted works. |
|
|
47
|
+
| `bibliographic_integrity_signals` | array | #678 additive v1 carrier. |
|
|
48
|
+
| `contamination_signal_omissions` | object | #511 Part A reason-provenance for degraded-lookup omissions. |
|
|
49
|
+
| `contamination_signals` | object | v3.7.3 + v3.9.0 + v3.11 contaminated-source advisory field (spec v3.7.3 §3.2 + v3.9.0 §3.4–§3.5 + v3.11 #182 Delta 1). |
|
|
50
|
+
| `contamination_signals_backfilled_at` | string | v3.7.3 backfill provenance (issue #105). |
|
|
51
|
+
| `description_last_audit` | null \| string | v3.7.1 trust-chain field. |
|
|
52
|
+
| `description_source` | string | v3.7.1 trust-chain field. |
|
|
53
|
+
| `doi` | string | DOI without leading 'doi:' or URL prefix. |
|
|
54
|
+
| `obtained_at` | string | Strongly recommended. |
|
|
55
|
+
| `obtained_via` | string | Strongly recommended. |
|
|
56
|
+
| `source_acquired` | boolean | v3.7.1 trust-chain field (spec § 3.1, D1). |
|
|
57
|
+
| `source_acquisition_date` | string | v3.7.1 trust-chain field. |
|
|
58
|
+
| `source_acquisition_path` | string | v3.7.1 trust-chain field. |
|
|
59
|
+
| `source_verification_method` | string | v3.7.1 trust-chain field. |
|
|
60
|
+
| `source_verified_against_original` | boolean | v3.7.1 trust-chain field. |
|
|
61
|
+
| `tags` | array | User-assigned tags from the source KB. |
|
|
62
|
+
| `user_notes` | string | PRIVATE FIELD. |
|
|
63
|
+
| `venue` | string | — |
|
|
64
|
+
| `venue_type` | string | v3.10 (spec §3 PR-B item 2). |
|
|
65
|
+
| `venue_type_provenance` | string | v3.10 (spec §3 PR-B item 3). |
|
|
66
|
+
| `venue_type_source` | string | v3.10 (spec §3 PR-B item 4). |
|
|
67
|
+
<!-- GENERATED:LITERATURE_CORPUS_OPTIONAL:END -->
|
|
68
|
+
|
|
69
|
+
### 3.1 `authors` format (CSL-JSON names)
|
|
70
|
+
|
|
71
|
+
Each entry in `authors[]` is one of:
|
|
72
|
+
|
|
73
|
+
- **Personal name**: `{family: "Chen", given: "Cindy"}`. `family` is required; `given` and CSL particles (`suffix`, `dropping-particle`, `non-dropping-particle`, `comma-suffix`, `static-ordering`, `parse-names`) are optional.
|
|
74
|
+
- **Institution / corporate name**: `{literal: "World Health Organization"}`. `literal` is required; no other fields.
|
|
75
|
+
|
|
76
|
+
Adapters SHOULD preserve the upstream distinction (personal vs. institution). See [CSL-JSON name spec](https://docs.citationstyles.org/en/stable/specification.html#names) for edge cases.
|
|
77
|
+
|
|
78
|
+
### 3.2 Privacy caveat for `abstract` and `user_notes`
|
|
79
|
+
|
|
80
|
+
Publishers typically retain rights to abstracts; user notes often quote copyrighted material. The schema marks these fields as PRIVATE and does NOT enforce anything at the CI level. **If you publish a passport (e.g., commit it to a public repo or share it on the web), you are responsible for removing or clearing these fields.** ARS consumers treat both fields as optional; omitting them never causes failure.
|
|
81
|
+
|
|
82
|
+
## 4. Rejection log
|
|
83
|
+
|
|
84
|
+
Whenever an adapter cannot produce a valid `literature_corpus_entry` for an input item, it MUST push a rejection into `rejection_log.yaml.rejected[]` and MUST NOT silently drop the item.
|
|
85
|
+
|
|
86
|
+
The `reason` field uses a closed enum of categorical values:
|
|
87
|
+
|
|
88
|
+
| `reason` | When |
|
|
89
|
+
|----------|------|
|
|
90
|
+
| `missing_required_field` | One or more required fields (citation_key / title / authors / year / source_pointer) cannot be derived. Adapter SHOULD also populate `missing_fields`. |
|
|
91
|
+
| `invalid_field_format` | A field is present but fails schema format (e.g., DOI pattern mismatch). |
|
|
92
|
+
| `duplicate_citation_key` | Another entry already used this citekey and the adapter cannot disambiguate. |
|
|
93
|
+
| `unresolvable_source_pointer` | The source URI points to something that does not exist. Adapters typically do not check this; use only if the adapter actually tries to resolve. |
|
|
94
|
+
| `year_unparseable` | Year cannot be extracted from the source field ("n.d.", "forthcoming", "Spring 2024"). |
|
|
95
|
+
| `authors_unparseable` | Authors field is empty, contains only non-author creators, or has unparseable content. |
|
|
96
|
+
| `adapter_error` | Adapter-internal bug, not an input data problem. Use sparingly. |
|
|
97
|
+
| `other` | Anything else. When `reason=other`, `detail` is REQUIRED. |
|
|
98
|
+
|
|
99
|
+
The `raw` field, when present, MUST be either an object (structured input) or a string (filename or text line). Arrays, numbers, booleans, and null are disallowed so downstream viewers can assume printable shapes.
|
|
100
|
+
|
|
101
|
+
## 5. Error handling (fail-soft)
|
|
102
|
+
|
|
103
|
+
**Entry-level problems** → push to rejection log, continue.
|
|
104
|
+
**Adapter-level problems** (input file missing, unreadable, malformed at the root) → write nothing, print a clear error to stderr, exit with code 1.
|
|
105
|
+
|
|
106
|
+
Do NOT emit a partial passport. Either the passport represents a complete scan of the user's input, or the adapter failed loudly.
|
|
107
|
+
|
|
108
|
+
## 6. Determinism
|
|
109
|
+
|
|
110
|
+
Running an adapter twice on identical input MUST produce byte-identical output except for:
|
|
111
|
+
|
|
112
|
+
- `generated_at` in the rejection log
|
|
113
|
+
- `obtained_at` on each entry
|
|
114
|
+
|
|
115
|
+
Achieve this by:
|
|
116
|
+
|
|
117
|
+
- Sorting `literature_corpus[]` by `citation_key`
|
|
118
|
+
- Sorting `rejection_log.rejected[]` by `source`
|
|
119
|
+
- Serializing YAML with sorted keys
|
|
120
|
+
|
|
121
|
+
## 7. Provenance
|
|
122
|
+
|
|
123
|
+
Each `literature_corpus` entry SHOULD carry `obtained_via` and `obtained_at`. The `rejection_log` MUST carry `adapter_name`, `adapter_version`, and `generated_at`. These fields let downstream users trace which adapter version produced which entry — useful when a library's schema or a source KB layout changes.
|
|
124
|
+
|
|
125
|
+
## 8. Extension points for user-written adapters
|
|
126
|
+
|
|
127
|
+
Custom adapters are welcome and expected. Recommended conventions:
|
|
128
|
+
|
|
129
|
+
- Set `obtained_via: "other"` on each entry, and set `adapter_name` to a clear string (e.g., `"notion-adapter-v1"`, `"my-custom-sqlite-reader"`).
|
|
130
|
+
- Set `adapter_version` to a semver-ish string so downstream tools can diagnose output changes.
|
|
131
|
+
- Follow the same CLI shape as the three reference adapters (`--input`, `--passport`, `--rejection-log`) if you want to slot into similar tooling.
|
|
132
|
+
|
|
133
|
+
Common user-written adapter families include:
|
|
134
|
+
|
|
135
|
+
- **Zotero Web API**: one that calls `api.zotero.org` with a user API token. Not shipped with ARS by design (auth and rate-limit management would pull ARS into data-layer territory).
|
|
136
|
+
- **Notion / Readwise / Airtable**: each has its own SDK; the adapter's job is only to map the source's book/article objects into `literature_corpus_entry` shape.
|
|
137
|
+
- **Cross-source merger**: reads multiple sources and emits a combined passport. Handle citekey collisions explicitly.
|
|
138
|
+
|
|
139
|
+
## 9. Testing your adapter
|
|
140
|
+
|
|
141
|
+
Before committing passport output to any workflow:
|
|
142
|
+
|
|
143
|
+
1. Validate against the schema: `python scripts/check_literature_corpus_schema.py --passport <your_passport.yaml> --rejection-log <your_rejection_log.yaml>`.
|
|
144
|
+
2. Run your adapter twice on the same input and diff the outputs (after stripping `generated_at` / `obtained_at`). Any non-timestamp difference is a determinism bug.
|
|
145
|
+
3. Feed a known-bad entry to confirm it lands in the rejection log rather than silently vanishing or crashing.
|
|
146
|
+
|
|
147
|
+
The three reference adapters have pytest coverage under `scripts/adapters/tests/` — copying that pattern for your own adapter is a good starting point.
|
|
148
|
+
|
|
149
|
+
## 10. Relationship to other ARS artifacts
|
|
150
|
+
|
|
151
|
+
- [`shared/handoff_schemas.md`](../../../shared/handoff_schemas.md) Schema 9: the `literature_corpus[]` field lives inside the Material Passport.
|
|
152
|
+
- [`academic-pipeline/references/passport_as_reset_boundary.md`](../passport_as_reset_boundary.md): `literature_corpus[]` is consumed across reset boundaries like any other passport field.
|
|
153
|
+
- ARS agents that consume `literature_corpus[]` are **deferred** to v3.6.5+. As of v3.6.4, the field is a defined input port with no runtime consumer; adapters produce it, future ARS versions read it.
|