psyclaw 0.27.23 → 0.28.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1069) hide show
  1. package/README.md +11 -5
  2. package/agents/recommended/catalog.json +99 -0
  3. package/dist/apps/panel/index.html +5 -5
  4. package/dist/src/adapters/pi/extension.js +339 -94
  5. package/dist/src/adapters/pi/extension.js.map +1 -1
  6. package/dist/src/adapters/pi/rpc.d.ts +2 -0
  7. package/dist/src/adapters/pi/rpc.js +9 -2
  8. package/dist/src/adapters/pi/rpc.js.map +1 -1
  9. package/dist/src/agents/import.js +44 -32
  10. package/dist/src/agents/import.js.map +1 -1
  11. package/dist/src/agents/recommended-personas.d.ts +42 -0
  12. package/dist/src/agents/recommended-personas.js +135 -0
  13. package/dist/src/agents/recommended-personas.js.map +1 -0
  14. package/dist/src/analysis/hooks.d.ts +1 -0
  15. package/dist/src/analysis/hooks.js +20 -1
  16. package/dist/src/analysis/hooks.js.map +1 -1
  17. package/dist/src/ars/bridge.d.ts +20 -0
  18. package/dist/src/ars/bridge.js +132 -0
  19. package/dist/src/ars/bridge.js.map +1 -0
  20. package/dist/src/ars/contracts.d.ts +55 -0
  21. package/dist/src/ars/contracts.js +2 -0
  22. package/dist/src/ars/contracts.js.map +1 -0
  23. package/dist/src/ars/panel-plan.d.ts +4 -0
  24. package/dist/src/ars/panel-plan.js +11 -0
  25. package/dist/src/ars/panel-plan.js.map +1 -0
  26. package/dist/src/ars/pi-panel-executor.d.ts +30 -0
  27. package/dist/src/ars/pi-panel-executor.js +140 -0
  28. package/dist/src/ars/pi-panel-executor.js.map +1 -0
  29. package/dist/src/ars/profile.d.ts +36 -0
  30. package/dist/src/ars/profile.js +119 -0
  31. package/dist/src/ars/profile.js.map +1 -0
  32. package/dist/src/ars/re-review.d.ts +22 -0
  33. package/dist/src/ars/re-review.js +172 -0
  34. package/dist/src/ars/re-review.js.map +1 -0
  35. package/dist/src/branding.d.ts +2 -4
  36. package/dist/src/branding.js +3 -5
  37. package/dist/src/branding.js.map +1 -1
  38. package/dist/src/bundled-tools.d.ts +3 -0
  39. package/dist/src/bundled-tools.js +21 -0
  40. package/dist/src/bundled-tools.js.map +1 -0
  41. package/dist/src/chat.js +6 -5
  42. package/dist/src/chat.js.map +1 -1
  43. package/dist/src/cli.js +6 -3
  44. package/dist/src/cli.js.map +1 -1
  45. package/dist/src/creation/contracts.d.ts +41 -0
  46. package/dist/src/creation/contracts.js +2 -0
  47. package/dist/src/creation/contracts.js.map +1 -0
  48. package/dist/src/creation/service.d.ts +7 -0
  49. package/dist/src/creation/service.js +208 -0
  50. package/dist/src/creation/service.js.map +1 -0
  51. package/dist/src/index.d.ts +11 -0
  52. package/dist/src/index.js +11 -0
  53. package/dist/src/index.js.map +1 -1
  54. package/dist/src/install/installer.js +32 -10
  55. package/dist/src/install/installer.js.map +1 -1
  56. package/dist/src/orchestration/bundled-personas.d.ts +16 -0
  57. package/dist/src/orchestration/bundled-personas.js +101 -0
  58. package/dist/src/orchestration/bundled-personas.js.map +1 -0
  59. package/dist/src/orchestration/effects.d.ts +8 -0
  60. package/dist/src/orchestration/effects.js +39 -0
  61. package/dist/src/orchestration/effects.js.map +1 -0
  62. package/dist/src/orchestration/personas.d.ts +16 -0
  63. package/dist/src/orchestration/personas.js +64 -0
  64. package/dist/src/orchestration/personas.js.map +1 -0
  65. package/dist/src/orchestration/pi-executor.d.ts +9 -4
  66. package/dist/src/orchestration/pi-executor.js +55 -22
  67. package/dist/src/orchestration/pi-executor.js.map +1 -1
  68. package/dist/src/orchestration/research-agents.d.ts +3 -7
  69. package/dist/src/orchestration/research-agents.js +5 -69
  70. package/dist/src/orchestration/research-agents.js.map +1 -1
  71. package/dist/src/panel/server.js +19 -4
  72. package/dist/src/panel/server.js.map +1 -1
  73. package/dist/src/project/paths.d.ts +3 -0
  74. package/dist/src/project/paths.js +7 -0
  75. package/dist/src/project/paths.js.map +1 -1
  76. package/dist/src/rules/user-rules.d.ts +8 -0
  77. package/dist/src/rules/user-rules.js +36 -0
  78. package/dist/src/rules/user-rules.js.map +1 -0
  79. package/dist/src/skills/contracts.d.ts +4 -4
  80. package/dist/src/skills/recommended.js +1 -1
  81. package/dist/src/skills/registry.js +49 -28
  82. package/dist/src/skills/registry.js.map +1 -1
  83. package/dist/src/style/cli-ui.d.ts +14 -0
  84. package/dist/src/style/cli-ui.js +45 -1
  85. package/dist/src/style/cli-ui.js.map +1 -1
  86. package/dist/src/tui/skill-manager.js +1 -1
  87. package/dist/src/tui/skill-manager.js.map +1 -1
  88. package/dist/src/updates/update.js +9 -3
  89. package/dist/src/updates/update.js.map +1 -1
  90. package/package.json +15 -3
  91. package/scripts/rebrand-pi.mjs +6 -0
  92. package/skills/recommended/catalog.json +2 -11
  93. package/vendor/ars/.claude/CLAUDE.md +371 -0
  94. package/vendor/ars/.command-invariants.toml +24 -0
  95. package/vendor/ars/CITATION.cff +35 -0
  96. package/vendor/ars/LICENSE +417 -0
  97. package/vendor/ars/MODE_REGISTRY.md +76 -0
  98. package/vendor/ars/NOTICE.md +26 -0
  99. package/vendor/ars/POSITIONING.md +99 -0
  100. package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
  101. package/vendor/ars/README.md +751 -0
  102. package/vendor/ars/SECURITY.md +52 -0
  103. package/vendor/ars/THIRD_PARTY.md +70 -0
  104. package/vendor/ars/academic-paper/SKILL.md +542 -0
  105. package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
  106. package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
  107. package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
  108. package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
  109. package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
  110. package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
  111. package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
  112. package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
  113. package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
  114. package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
  115. package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
  116. package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
  117. package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
  118. package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
  119. package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
  120. package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
  121. package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
  122. package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
  123. package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
  124. package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
  125. package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
  126. package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
  127. package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
  128. package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
  129. package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
  130. package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
  131. package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
  132. package/vendor/ars/academic-paper/references/changelog.md +11 -0
  133. package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
  134. package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
  135. package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
  136. package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
  137. package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
  138. package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
  139. package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
  140. package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
  141. package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
  142. package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
  143. package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
  144. package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
  145. package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
  146. package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
  147. package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
  148. package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
  149. package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
  150. package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
  151. package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
  152. package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
  153. package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
  154. package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
  155. package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
  156. package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
  157. package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
  158. package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
  159. package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
  160. package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
  161. package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
  162. package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
  163. package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
  164. package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
  165. package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
  166. package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
  167. package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
  168. package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
  169. package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
  170. package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
  171. package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
  172. package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
  173. package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
  174. package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
  175. package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
  176. package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
  177. package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
  178. package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
  179. package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
  180. package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
  181. package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
  182. package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
  183. package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
  184. package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
  185. package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
  186. package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
  187. package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
  188. package/vendor/ars/academic-paper-reviewer/references/reviewer_sprint_prompt_source.md +324 -0
  189. package/vendor/ars/academic-paper-reviewer/references/sprint_contract_protocol.md +296 -0
  190. package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
  191. package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
  192. package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
  193. package/vendor/ars/academic-paper-reviewer/templates/peer_review_report_template.md +305 -0
  194. package/vendor/ars/academic-paper-reviewer/templates/revision_response_template.md +248 -0
  195. package/vendor/ars/academic-pipeline/SKILL.md +736 -0
  196. package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
  197. package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
  198. package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
  199. package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
  200. package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
  201. package/vendor/ars/academic-pipeline/examples/full_pipeline_example.md +482 -0
  202. package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
  203. package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
  204. package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
  205. package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
  206. package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
  207. package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
  208. package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
  209. package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
  210. package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
  211. package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
  212. package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
  213. package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
  214. package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
  215. package/vendor/ars/academic-pipeline/references/pipeline_state_machine.md +405 -0
  216. package/vendor/ars/academic-pipeline/references/plagiarism_detection_protocol.md +239 -0
  217. package/vendor/ars/academic-pipeline/references/process_summary_protocol.md +209 -0
  218. package/vendor/ars/academic-pipeline/references/progress_dashboard_template.md +38 -0
  219. package/vendor/ars/academic-pipeline/references/reinforcement_content.md +15 -0
  220. package/vendor/ars/academic-pipeline/references/reproducibility_audit.md +55 -0
  221. package/vendor/ars/academic-pipeline/references/score_trajectory_protocol.md +78 -0
  222. package/vendor/ars/academic-pipeline/references/team_collaboration_protocol.md +261 -0
  223. package/vendor/ars/academic-pipeline/references/two_stage_review_protocol.md +27 -0
  224. package/vendor/ars/academic-pipeline/templates/pipeline_status_template.md +146 -0
  225. package/vendor/ars/agents/report_compiler_agent.md +341 -0
  226. package/vendor/ars/agents/research_architect_agent.md +298 -0
  227. package/vendor/ars/agents/synthesis_agent.md +356 -0
  228. package/vendor/ars/commands/ars-3w.md +10 -0
  229. package/vendor/ars/commands/ars-abstract.md +10 -0
  230. package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
  231. package/vendor/ars/commands/ars-citation-check.md +10 -0
  232. package/vendor/ars/commands/ars-disclosure.md +10 -0
  233. package/vendor/ars/commands/ars-format-convert.md +10 -0
  234. package/vendor/ars/commands/ars-full.md +9 -0
  235. package/vendor/ars/commands/ars-lit-review.md +12 -0
  236. package/vendor/ars/commands/ars-mark-read.md +18 -0
  237. package/vendor/ars/commands/ars-outline.md +10 -0
  238. package/vendor/ars/commands/ars-plan.md +10 -0
  239. package/vendor/ars/commands/ars-rebuttal-audit.md +12 -0
  240. package/vendor/ars/commands/ars-reviewer.md +9 -0
  241. package/vendor/ars/commands/ars-revision-coach.md +9 -0
  242. package/vendor/ars/commands/ars-revision.md +10 -0
  243. package/vendor/ars/commands/ars-unmark-read.md +16 -0
  244. package/vendor/ars/deep-research/SKILL.md +600 -0
  245. package/vendor/ars/deep-research/agents/bibliography_agent.md +473 -0
  246. package/vendor/ars/deep-research/agents/devils_advocate_agent.md +192 -0
  247. package/vendor/ars/deep-research/agents/editor_in_chief_agent.md +167 -0
  248. package/vendor/ars/deep-research/agents/ethics_review_agent.md +267 -0
  249. package/vendor/ars/deep-research/agents/meta_analysis_agent.md +325 -0
  250. package/vendor/ars/deep-research/agents/monitoring_agent.md +209 -0
  251. package/vendor/ars/deep-research/agents/report_compiler_agent.md +341 -0
  252. package/vendor/ars/deep-research/agents/research_architect_agent.md +298 -0
  253. package/vendor/ars/deep-research/agents/research_question_agent.md +216 -0
  254. package/vendor/ars/deep-research/agents/risk_of_bias_agent.md +231 -0
  255. package/vendor/ars/deep-research/agents/socratic_mentor_agent.md +764 -0
  256. package/vendor/ars/deep-research/agents/source_verification_agent.md +219 -0
  257. package/vendor/ars/deep-research/agents/synthesis_agent.md +356 -0
  258. package/vendor/ars/deep-research/agents/timeline_extraction_agent.md +99 -0
  259. package/vendor/ars/deep-research/examples/exploratory_research.md +157 -0
  260. package/vendor/ars/deep-research/examples/fact_check_mode.md +173 -0
  261. package/vendor/ars/deep-research/examples/handoff_to_paper.md +318 -0
  262. package/vendor/ars/deep-research/examples/idea_diversity_coverage_gap_advisory.md +64 -0
  263. package/vendor/ars/deep-research/examples/policy_analysis.md +161 -0
  264. package/vendor/ars/deep-research/examples/review_mode.md +253 -0
  265. package/vendor/ars/deep-research/examples/socratic_guided_research.md +331 -0
  266. package/vendor/ars/deep-research/examples/systematic_review.md +133 -0
  267. package/vendor/ars/deep-research/references/apa7_style_guide.md +162 -0
  268. package/vendor/ars/deep-research/references/argumentation_reasoning_framework.md +68 -0
  269. package/vendor/ars/deep-research/references/arxiv_api_protocol.md +76 -0
  270. package/vendor/ars/deep-research/references/changelog.md +22 -0
  271. package/vendor/ars/deep-research/references/chinese_literature_api_protocol.md +317 -0
  272. package/vendor/ars/deep-research/references/cross_agent_quality_definitions.md +14 -0
  273. package/vendor/ars/deep-research/references/crossref_api_protocol.md +84 -0
  274. package/vendor/ars/deep-research/references/equator_reporting_guidelines.md +482 -0
  275. package/vendor/ars/deep-research/references/ethics_checklist.md +282 -0
  276. package/vendor/ars/deep-research/references/failure_paths.md +355 -0
  277. package/vendor/ars/deep-research/references/interdisciplinary_bridges.md +292 -0
  278. package/vendor/ars/deep-research/references/irb_decision_tree.md +315 -0
  279. package/vendor/ars/deep-research/references/literature_monitoring_strategies.md +263 -0
  280. package/vendor/ars/deep-research/references/logical_fallacies.md +192 -0
  281. package/vendor/ars/deep-research/references/methodology_patterns.md +462 -0
  282. package/vendor/ars/deep-research/references/mode_selection_guide.md +331 -0
  283. package/vendor/ars/deep-research/references/openalex_api_protocol.md +82 -0
  284. package/vendor/ars/deep-research/references/preregistration_guide.md +324 -0
  285. package/vendor/ars/deep-research/references/semantic_scholar_api_protocol.md +107 -0
  286. package/vendor/ars/deep-research/references/socratic_mode_protocol.md +99 -0
  287. package/vendor/ars/deep-research/references/socratic_questioning_framework.md +232 -0
  288. package/vendor/ars/deep-research/references/source_quality_hierarchy.md +188 -0
  289. package/vendor/ars/deep-research/references/systematic_review_protocol.md +95 -0
  290. package/vendor/ars/deep-research/references/systematic_review_toolkit.md +353 -0
  291. package/vendor/ars/deep-research/templates/evidence_assessment_template.md +127 -0
  292. package/vendor/ars/deep-research/templates/literature_matrix_template.md +85 -0
  293. package/vendor/ars/deep-research/templates/preregistration_template.md +318 -0
  294. package/vendor/ars/deep-research/templates/prisma_protocol_template.md +248 -0
  295. package/vendor/ars/deep-research/templates/prisma_report_template.md +415 -0
  296. package/vendor/ars/deep-research/templates/research_brief_template.md +93 -0
  297. package/vendor/ars/package.json +24 -0
  298. package/vendor/ars/pi/README.md +161 -0
  299. package/vendor/ars/pi/package.json +26 -0
  300. package/vendor/ars/pi/wrapper.js +193 -0
  301. package/vendor/ars/pi/wrapper.test.mjs +201 -0
  302. package/vendor/ars/pyproject.toml +2 -0
  303. package/vendor/ars/requirements-pdf-content-classifier.txt +5 -0
  304. package/vendor/ars/scripts/_block_parser.py +396 -0
  305. package/vendor/ars/scripts/_ci_pytest_manifest.toml +661 -0
  306. package/vendor/ars/scripts/_claim_audit_constants.py +268 -0
  307. package/vendor/ars/scripts/_e4_evidence.py +110 -0
  308. package/vendor/ars/scripts/_eval_threshold_gate.py +73 -0
  309. package/vendor/ars/scripts/_markdown_lint_util.py +224 -0
  310. package/vendor/ars/scripts/_next_verified_at_ms.py +176 -0
  311. package/vendor/ars/scripts/_passport_yaml.py +53 -0
  312. package/vendor/ars/scripts/_skill_lint.py +254 -0
  313. package/vendor/ars/scripts/_text_similarity.py +141 -0
  314. package/vendor/ars/scripts/adapters/README.md +89 -0
  315. package/vendor/ars/scripts/adapters/_common.py +209 -0
  316. package/vendor/ars/scripts/adapters/examples/folder_scan/expected_passport.yaml +25 -0
  317. package/vendor/ars/scripts/adapters/examples/folder_scan/expected_rejection_log.yaml +18 -0
  318. package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture/Chen2024_AIAssessment.pdf +0 -0
  319. package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture/Wang_2023_formative_feedback.pdf +0 -0
  320. package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture/paper1.pdf +0 -0
  321. package/vendor/ars/scripts/adapters/examples/folder_scan/input_fixture//344/270/255/346/226/207/346/252/224/345/220/215_2024.pdf +0 -0
  322. package/vendor/ars/scripts/adapters/examples/obsidian/expected_passport.yaml +40 -0
  323. package/vendor/ars/scripts/adapters/examples/obsidian/expected_rejection_log.yaml +13 -0
  324. package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/.gitkeep +0 -0
  325. package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/.obsidian/app.json +1 -0
  326. package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/_templates/tmpl.md +7 -0
  327. package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/chen2024ai.md +13 -0
  328. package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/invalid.md +1 -0
  329. package/vendor/ars/scripts/adapters/examples/obsidian/input_fixture/vault/wang2023formative.md +10 -0
  330. package/vendor/ars/scripts/adapters/examples/zotero/expected_passport.yaml +34 -0
  331. package/vendor/ars/scripts/adapters/examples/zotero/expected_rejection_log.yaml +34 -0
  332. package/vendor/ars/scripts/adapters/examples/zotero/input_fixture/.gitkeep +0 -0
  333. package/vendor/ars/scripts/adapters/examples/zotero/input_fixture/export.json +43 -0
  334. package/vendor/ars/scripts/adapters/folder_scan.py +214 -0
  335. package/vendor/ars/scripts/adapters/obsidian.py +336 -0
  336. package/vendor/ars/scripts/adapters/tests/.gitkeep +0 -0
  337. package/vendor/ars/scripts/adapters/tests/conftest.py +77 -0
  338. package/vendor/ars/scripts/adapters/tests/test_check_corpus_consumer_protocol.py +632 -0
  339. package/vendor/ars/scripts/adapters/tests/test_check_literature_corpus_schema.py +631 -0
  340. package/vendor/ars/scripts/adapters/tests/test_common.py +365 -0
  341. package/vendor/ars/scripts/adapters/tests/test_conftest.py +96 -0
  342. package/vendor/ars/scripts/adapters/tests/test_folder_scan.py +260 -0
  343. package/vendor/ars/scripts/adapters/tests/test_literature_corpus_entry_schema.py +745 -0
  344. package/vendor/ars/scripts/adapters/tests/test_obsidian.py +357 -0
  345. package/vendor/ars/scripts/adapters/tests/test_rejection_log_schema.py +271 -0
  346. package/vendor/ars/scripts/adapters/tests/test_sync_adapter_docs.py +88 -0
  347. package/vendor/ars/scripts/adapters/tests/test_zotero.py +454 -0
  348. package/vendor/ars/scripts/adapters/zotero.py +318 -0
  349. package/vendor/ars/scripts/adjudication_activity.py +1592 -0
  350. package/vendor/ars/scripts/announce-ars-loaded.sh +144 -0
  351. package/vendor/ars/scripts/ars_anchorize_draft.py +170 -0
  352. package/vendor/ars/scripts/ars_apply_revision_patch.py +912 -0
  353. package/vendor/ars/scripts/ars_cache_invalidate.py +40 -0
  354. package/vendor/ars/scripts/ars_mark_read.py +521 -0
  355. package/vendor/ars/scripts/ars_phase_scope_manifest.json +33 -0
  356. package/vendor/ars/scripts/ars_update_check.sh +215 -0
  357. package/vendor/ars/scripts/ars_write_scope_guard.py +506 -0
  358. package/vendor/ars/scripts/arxiv_client.py +222 -0
  359. package/vendor/ars/scripts/audit_snapshot.py +572 -0
  360. package/vendor/ars/scripts/bibliographic_integrity_signals.py +800 -0
  361. package/vendor/ars/scripts/bootstrap_timeline_yaml.py +146 -0
  362. package/vendor/ars/scripts/build_claim_standing_candidate_ledger.py +1238 -0
  363. package/vendor/ars/scripts/build_claim_standing_query_plan.py +643 -0
  364. package/vendor/ars/scripts/build_content_coverage_advisory.py +1205 -0
  365. package/vendor/ars/scripts/build_cross_document_consistency_advisory.py +2332 -0
  366. package/vendor/ars/scripts/build_review_pathway_rule_trace.py +830 -0
  367. package/vendor/ars/scripts/build_submission_packet_manifest.py +2310 -0
  368. package/vendor/ars/scripts/check_215_field_norm.py +173 -0
  369. package/vendor/ars/scripts/check_216_surface_form.py +250 -0
  370. package/vendor/ars/scripts/check_268_nested_commitment_ledger.py +180 -0
  371. package/vendor/ars/scripts/check_390_revision_patch_discipline.py +296 -0
  372. package/vendor/ars/scripts/check_392_citation_verification_intake.py +126 -0
  373. package/vendor/ars/scripts/check_394_submission_policy.py +178 -0
  374. package/vendor/ars/scripts/check_439_format_profile.py +307 -0
  375. package/vendor/ars/scripts/check_619_disclosure_closeout.py +237 -0
  376. package/vendor/ars/scripts/check_630_codex_subscription_transport.py +456 -0
  377. package/vendor/ars/scripts/check_669_review_pathway_rule_trace.py +662 -0
  378. package/vendor/ars/scripts/check_670_revision_roadmap_integration.py +518 -0
  379. package/vendor/ars/scripts/check_673_adjudication_activity.py +684 -0
  380. package/vendor/ars/scripts/check_684_review_criteria_binding.py +557 -0
  381. package/vendor/ars/scripts/check_agents_mirror_sync.py +115 -0
  382. package/vendor/ars/scripts/check_audit_artifact_consistency.py +2313 -0
  383. package/vendor/ars/scripts/check_benchmark_report.py +79 -0
  384. package/vendor/ars/scripts/check_bibliographic_integrity_signals.py +831 -0
  385. package/vendor/ars/scripts/check_calibration_tiers.py +235 -0
  386. package/vendor/ars/scripts/check_changelog_covers_merges.py +289 -0
  387. package/vendor/ars/scripts/check_ci_pytest_manifest.py +204 -0
  388. package/vendor/ars/scripts/check_claim_audit_consistency.py +1664 -0
  389. package/vendor/ars/scripts/check_claim_standing_candidate_ledger_integration.py +500 -0
  390. package/vendor/ars/scripts/check_claim_standing_freshness.py +253 -0
  391. package/vendor/ars/scripts/check_claim_standing_transmissions.py +449 -0
  392. package/vendor/ars/scripts/check_collaboration_depth_rubric.py +180 -0
  393. package/vendor/ars/scripts/check_command_frontmatter_name.py +116 -0
  394. package/vendor/ars/scripts/check_committee_correspondence.py +333 -0
  395. package/vendor/ars/scripts/check_compliance_report.py +108 -0
  396. package/vendor/ars/scripts/check_content_coverage_advisory_integration.py +796 -0
  397. package/vendor/ars/scripts/check_control_availability.py +172 -0
  398. package/vendor/ars/scripts/check_corpus_consumer_protocol.py +404 -0
  399. package/vendor/ars/scripts/check_cross_document_consistency_advisory_integration.py +1191 -0
  400. package/vendor/ars/scripts/check_cross_model_handoff_contract.py +234 -0
  401. package/vendor/ars/scripts/check_cross_model_verification_sync.py +261 -0
  402. package/vendor/ars/scripts/check_data_access_level.py +131 -0
  403. package/vendor/ars/scripts/check_data_flows.py +252 -0
  404. package/vendor/ars/scripts/check_decision_contract.py +464 -0
  405. package/vendor/ars/scripts/check_degradation_registry.py +326 -0
  406. package/vendor/ars/scripts/check_distribution_surface_claims.py +226 -0
  407. package/vendor/ars/scripts/check_domain_evidence_profile.py +538 -0
  408. package/vendor/ars/scripts/check_e4_promotion.py +195 -0
  409. package/vendor/ars/scripts/check_evals_gold_set.py +279 -0
  410. package/vendor/ars/scripts/check_evidence_row_integration.py +396 -0
  411. package/vendor/ars/scripts/check_experiment_provenance.py +117 -0
  412. package/vendor/ars/scripts/check_field_norm_severity.py +144 -0
  413. package/vendor/ars/scripts/check_firm_rules_sync.py +375 -0
  414. package/vendor/ars/scripts/check_heldout_measurement_report.py +1179 -0
  415. package/vendor/ars/scripts/check_human_subjects_output_contract.py +139 -0
  416. package/vendor/ars/scripts/check_human_subjects_reference_migration.py +844 -0
  417. package/vendor/ars/scripts/check_indirect_prompt_injection_no_call.py +328 -0
  418. package/vendor/ars/scripts/check_instruction_data_boundary.py +236 -0
  419. package/vendor/ars/scripts/check_judge_prompt_version.py +125 -0
  420. package/vendor/ars/scripts/check_literature_corpus_schema.py +402 -0
  421. package/vendor/ars/scripts/check_model_tiering.py +223 -0
  422. package/vendor/ars/scripts/check_panel_synthesis.py +1331 -0
  423. package/vendor/ars/scripts/check_passport_reset_contract.py +214 -0
  424. package/vendor/ars/scripts/check_pattern_eval_manifest.py +422 -0
  425. package/vendor/ars/scripts/check_persuasion_invariance_fixtures.py +637 -0
  426. package/vendor/ars/scripts/check_phase_conformance.py +2180 -0
  427. package/vendor/ars/scripts/check_pipeline_boundary_semantics.py +600 -0
  428. package/vendor/ars/scripts/check_pipeline_integrity.py +340 -0
  429. package/vendor/ars/scripts/check_policy_anchor_protocol.py +159 -0
  430. package/vendor/ars/scripts/check_policy_anchor_table.py +286 -0
  431. package/vendor/ars/scripts/check_preprint_venues_consistency.py +123 -0
  432. package/vendor/ars/scripts/check_prisma_trAIce_freshness.py +84 -0
  433. package/vendor/ars/scripts/check_promotion_bakeoff_preregistration.py +1303 -0
  434. package/vendor/ars/scripts/check_ranking_lift.py +323 -0
  435. package/vendor/ars/scripts/check_re_review_synthesis.py +2719 -0
  436. package/vendor/ars/scripts/check_receipt_enum_sync.py +203 -0
  437. package/vendor/ars/scripts/check_repro_lock.py +85 -0
  438. package/vendor/ars/scripts/check_review_pathway_output.py +276 -0
  439. package/vendor/ars/scripts/check_reviewer_data_fences.py +224 -0
  440. package/vendor/ars/scripts/check_reviewer_finding_contract.py +783 -0
  441. package/vendor/ars/scripts/check_reviewer_role_label.py +447 -0
  442. package/vendor/ars/scripts/check_reviewer_scoring_honesty.py +292 -0
  443. package/vendor/ars/scripts/check_reviewer_sprint_prompt_sync.py +409 -0
  444. package/vendor/ars/scripts/check_revision_claim_drift_suite_v2.py +1622 -0
  445. package/vendor/ars/scripts/check_revision_token_conservation.py +263 -0
  446. package/vendor/ars/scripts/check_risk_register.py +280 -0
  447. package/vendor/ars/scripts/check_role_scoped_contract.py +702 -0
  448. package/vendor/ars/scripts/check_rq_framing_patterns.py +184 -0
  449. package/vendor/ars/scripts/check_rubric_weight_consistency.py +32 -0
  450. package/vendor/ars/scripts/check_seeded_defect_fixtures.py +425 -0
  451. package/vendor/ars/scripts/check_setup_cross_model_parity.py +139 -0
  452. package/vendor/ars/scripts/check_spec_consistency.py +1249 -0
  453. package/vendor/ars/scripts/check_sprint_contract.py +371 -0
  454. package/vendor/ars/scripts/check_stage_capability_matrix.py +784 -0
  455. package/vendor/ars/scripts/check_submission_packet_manifest_integration.py +358 -0
  456. package/vendor/ars/scripts/check_surface_form_parity.py +445 -0
  457. package/vendor/ars/scripts/check_task_type.py +22 -0
  458. package/vendor/ars/scripts/check_tools_allowlist.py +538 -0
  459. package/vendor/ars/scripts/check_tortured_phrase_screening_integration.py +1974 -0
  460. package/vendor/ars/scripts/check_v3_10_134_write_scope.py +286 -0
  461. package/vendor/ars/scripts/check_v3_10_policy.py +656 -0
  462. package/vendor/ars/scripts/check_v3_6_6_ab_manifest.py +364 -0
  463. package/vendor/ars/scripts/check_v3_6_7_pattern_protection.py +1366 -0
  464. package/vendor/ars/scripts/check_v3_6_8_audit_scope_block.py +464 -0
  465. package/vendor/ars/scripts/check_v3_6_8_cite_provenance_pipeline.py +231 -0
  466. package/vendor/ars/scripts/check_v3_6_8_frontmatter_trust_schema.py +248 -0
  467. package/vendor/ars/scripts/check_v3_6_8_mark_read_commands.py +79 -0
  468. package/vendor/ars/scripts/check_v3_6_8_pattern_protection.py +941 -0
  469. package/vendor/ars/scripts/check_v3_7_3_three_layer_citation.py +318 -0
  470. package/vendor/ars/scripts/check_v3_8_annotation_literal_sync.py +228 -0
  471. package/vendor/ars/scripts/check_v3_9_0_triangulation.py +366 -0
  472. package/vendor/ars/scripts/check_v3_9_2_phase_boundary.py +270 -0
  473. package/vendor/ars/scripts/check_v3_9_4_temporal_verification.py +139 -0
  474. package/vendor/ars/scripts/check_venue_disclosure_policies.py +63 -0
  475. package/vendor/ars/scripts/check_version_consistency.py +826 -0
  476. package/vendor/ars/scripts/check_workflow_classification.py +223 -0
  477. package/vendor/ars/scripts/chinese_literature_client.py +1938 -0
  478. package/vendor/ars/scripts/citation_verification_summary.py +85 -0
  479. package/vendor/ars/scripts/claim_audit_calibration.py +517 -0
  480. package/vendor/ars/scripts/claim_audit_finalizer.py +456 -0
  481. package/vendor/ars/scripts/claim_audit_pipeline.py +1594 -0
  482. package/vendor/ars/scripts/claim_registry_coverage.py +493 -0
  483. package/vendor/ars/scripts/claim_standing_discovery.py +784 -0
  484. package/vendor/ars/scripts/claim_standing_stance_runner.py +758 -0
  485. package/vendor/ars/scripts/claim_standing_stance_scorer.py +239 -0
  486. package/vendor/ars/scripts/claim_strength_drift_disposition.py +666 -0
  487. package/vendor/ars/scripts/contamination_signals.py +689 -0
  488. package/vendor/ars/scripts/corpus_consumer_manifest.json +19 -0
  489. package/vendor/ars/scripts/cross_model_codex_transport.py +1374 -0
  490. package/vendor/ars/scripts/cross_model_codex_verify.sh +6 -0
  491. package/vendor/ars/scripts/cross_model_handoff.py +359 -0
  492. package/vendor/ars/scripts/cross_model_smoke_test.sh +183 -0
  493. package/vendor/ars/scripts/cross_model_smoke_test_codex.sh +35 -0
  494. package/vendor/ars/scripts/cross_model_verification/gemini_is_grounded.jq +45 -0
  495. package/vendor/ars/scripts/cross_model_verification/gemini_sources.jq +45 -0
  496. package/vendor/ars/scripts/cross_model_verification/normalize_compat_verdict.py +57 -0
  497. package/vendor/ars/scripts/cross_model_verification/openai_has_completed_web_search.jq +15 -0
  498. package/vendor/ars/scripts/cross_model_verification/openai_sources.jq +17 -0
  499. package/vendor/ars/scripts/cross_model_verification/openai_text.jq +11 -0
  500. package/vendor/ars/scripts/crossref_client.py +225 -0
  501. package/vendor/ars/scripts/dispatch_e4_panel.py +2731 -0
  502. package/vendor/ars/scripts/evidence_rows.py +2043 -0
  503. package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3.json +32 -0
  504. package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3_input.json +27 -0
  505. package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3_prime.json +32 -0
  506. package/vendor/ars/scripts/fixtures/adjudication_activity/author_stage3_prime_input.json +27 -0
  507. package/vendor/ars/scripts/fixtures/adjudication_activity/compliance_override.json +50 -0
  508. package/vendor/ars/scripts/fixtures/adjudication_activity/compliance_override_action.json +14 -0
  509. package/vendor/ars/scripts/fixtures/adjudication_activity/compliance_pass.json +44 -0
  510. package/vendor/ars/scripts/fixtures/adjudication_activity/explicit_user_request_log.json +26 -0
  511. package/vendor/ars/scripts/fixtures/adjudication_activity/mandatory_checkpoint_log.json +116 -0
  512. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/README.md +56 -0
  513. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.audit_artifact_entry.json +24 -0
  514. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.jsonl +4 -0
  515. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.meta.json +43 -0
  516. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a1_pass_with_p1/2026-04-30T15-22-04Z-d8f3.verdict.yaml +19 -0
  517. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/negative/a7_orphan_completion/2026-04-30T15-22-04Z-d8f3.jsonl +3 -0
  518. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.audit_artifact_entry.json +26 -0
  519. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.jsonl +4 -0
  520. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.meta.json +43 -0
  521. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/persisted_minor/2026-04-30T15-22-04Z-d8f3.verdict.yaml +19 -0
  522. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.audit_artifact_entry.json +24 -0
  523. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.jsonl +4 -0
  524. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.meta.json +43 -0
  525. package/vendor/ars/scripts/fixtures/audit_artifact_consistency/positive/proposal_pass/2026-04-30T15-22-04Z-d8f3.verdict.yaml +12 -0
  526. package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/retraction.json +46 -0
  527. package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/retraction_check_attestation.json +44 -0
  528. package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/tortured_phrase.json +44 -0
  529. package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/tortured_phrase_v1_2_abstract_missing.json +107 -0
  530. package/vendor/ars/scripts/fixtures/bibliographic_integrity_signals/tortured_phrase_v1_2_detected.json +124 -0
  531. package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/expected_outcomes.json +77 -0
  532. package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/manifest.yaml +37 -0
  533. package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/tuples/001-valid-doi-test.json +20 -0
  534. package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/tuples/002-valid-arxiv-test.json +19 -0
  535. package/vendor/ars/scripts/fixtures/check_evals_gold_set/clean/tuples/003-fabricated-test.json +20 -0
  536. package/vendor/ars/scripts/fixtures/claim_audit_calibration/gold_set.json +344 -0
  537. package/vendor/ars/scripts/fixtures/claim_standing_candidate_ledger/query_plan.json +108 -0
  538. package/vendor/ars/scripts/fixtures/claim_standing_candidate_ledger/retrieval_input.json +179 -0
  539. package/vendor/ars/scripts/fixtures/committee_correspondence/16fd83f6aec7/concern_tracker.json +129 -0
  540. package/vendor/ars/scripts/fixtures/committee_correspondence/16fd83f6aec7/response_skeleton.md +19 -0
  541. package/vendor/ars/scripts/fixtures/committee_correspondence/16fd83f6aec7/source_letter.txt +9 -0
  542. package/vendor/ars/scripts/fixtures/content_coverage_advisory/base_draft.json +48 -0
  543. package/vendor/ars/scripts/fixtures/content_coverage_advisory/base_inventory.json +38 -0
  544. package/vendor/ars/scripts/fixtures/content_coverage_advisory/packet/consent.txt +1 -0
  545. package/vendor/ars/scripts/fixtures/content_coverage_advisory/session_sources.json +3 -0
  546. package/vendor/ars/scripts/fixtures/cross_document_consistency/README.md +6 -0
  547. package/vendor/ars/scripts/fixtures/cross_document_consistency/accepted_draft.md +35 -0
  548. package/vendor/ars/scripts/fixtures/cross_document_consistency/cases.json +75 -0
  549. package/vendor/ars/scripts/fixtures/cross_document_consistency/preregistration.md +5 -0
  550. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/forbidden_event.jsonl +4 -0
  551. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/grounded_verified.jsonl +3 -0
  552. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/malformed.jsonl +3 -0
  553. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/missing_search.jsonl +2 -0
  554. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/multiple_finals.jsonl +4 -0
  555. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/not_found.jsonl +3 -0
  556. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/unbound_source.jsonl +3 -0
  557. package/vendor/ars/scripts/fixtures/cross_model_codex_transport/wrong_search_shape.jsonl +3 -0
  558. package/vendor/ars/scripts/fixtures/evidence_rows/phase_e_inputs.json +114 -0
  559. package/vendor/ars/scripts/fixtures/evidence_rows/session_sources.json +5 -0
  560. package/vendor/ars/scripts/fixtures/human_subjects_authority/cross-border-us-tw-gdpr.json +71 -0
  561. package/vendor/ars/scripts/fixtures/human_subjects_authority/gdpr-member-state-unresolved.json +62 -0
  562. package/vendor/ars/scripts/fixtures/human_subjects_authority/missing-data-axis.json +45 -0
  563. package/vendor/ars/scripts/fixtures/human_subjects_authority/no-profile.json +33 -0
  564. package/vendor/ars/scripts/fixtures/human_subjects_authority/tw-gdpr-two-axis.json +74 -0
  565. package/vendor/ars/scripts/fixtures/human_subjects_authority/us-gdpr-two-axis.json +74 -0
  566. package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/lint-near-misses.json +72 -0
  567. package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/no-profile-request.json +18 -0
  568. package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/tw-candidates-request.json +63 -0
  569. package/vendor/ars/scripts/fixtures/review_pathway_rule_trace/us-candidates-request.json +77 -0
  570. package/vendor/ars/scripts/fixtures/review_target_context/exact-declaration.json +24 -0
  571. package/vendor/ars/scripts/fixtures/review_target_context/field-general-declaration.json +24 -0
  572. package/vendor/ars/scripts/fixtures/review_target_context/msr-2027-technical-full-declaration.json +24 -0
  573. package/vendor/ars/scripts/fixtures/review_target_context/synthetic-registry.json +92 -0
  574. package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/README.md +21 -0
  575. package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_attested_only.json +55 -0
  576. package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_machine_supported.json +49 -0
  577. package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_not_isolated.json +56 -0
  578. package/vendor/ars/scripts/fixtures/revision_claim_drift_v2/subject_context_unknown.json +49 -0
  579. package/vendor/ars/scripts/fixtures/submission_package/clean/paper.md +16 -0
  580. package/vendor/ars/scripts/fixtures/submission_package/clean/references.bib +13 -0
  581. package/vendor/ars/scripts/fixtures/submission_package/fallback_authoryear/paper.md +11 -0
  582. package/vendor/ars/scripts/fixtures/submission_package/fallback_authoryear/references.bib +13 -0
  583. package/vendor/ars/scripts/fixtures/submission_package/fallback_latex/paper.tex +9 -0
  584. package/vendor/ars/scripts/fixtures/submission_package/fallback_latex/references.bib +13 -0
  585. package/vendor/ars/scripts/fixtures/submission_package/marker_no_join/paper.md +7 -0
  586. package/vendor/ars/scripts/fixtures/submission_package/orphan_intext/paper.md +8 -0
  587. package/vendor/ars/scripts/fixtures/submission_package/orphan_intext/references.bib +6 -0
  588. package/vendor/ars/scripts/fixtures/submission_package/passports/corpus_only.yaml +9 -0
  589. package/vendor/ars/scripts/fixtures/submission_package/passports/summary_join.yaml +16 -0
  590. package/vendor/ars/scripts/fixtures/submission_package/profiles/full.yaml +15 -0
  591. package/vendor/ars/scripts/fixtures/submission_package/profiles/tight.yaml +15 -0
  592. package/vendor/ars/scripts/fixtures/submission_package/summary_join/paper.md +7 -0
  593. package/vendor/ars/scripts/fixtures/submission_package/uncited_reference/paper.md +9 -0
  594. package/vendor/ars/scripts/fixtures/submission_package/uncited_reference/references.bib +13 -0
  595. package/vendor/ars/scripts/fixtures/submission_package/venue_clean/paper.md +26 -0
  596. package/vendor/ars/scripts/fixtures/submission_package/venue_clean/references.bib +13 -0
  597. package/vendor/ars/scripts/fixtures/submission_package/venue_violations/paper.md +20 -0
  598. package/vendor/ars/scripts/fixtures/submission_package/venue_violations/references.bib +13 -0
  599. package/vendor/ars/scripts/fixtures/submission_packet_manifest/base_inventory.json +101 -0
  600. package/vendor/ars/scripts/fixtures/submission_packet_manifest/packet/consent-materials.txt +3 -0
  601. package/vendor/ars/scripts/fixtures/submission_packet_manifest/packet/training-certificate.txt +2 -0
  602. package/vendor/ars/scripts/fixtures/submission_packet_manifest/packet/tw-consent-materials.txt +3 -0
  603. package/vendor/ars/scripts/fixtures/tortured_phrase_screening/corpus_input.yaml +30 -0
  604. package/vendor/ars/scripts/fixtures/tortured_phrase_screening/own_draft.md +36 -0
  605. package/vendor/ars/scripts/fixtures/tortured_phrase_screening/own_draft.tex +21 -0
  606. package/vendor/ars/scripts/fixtures/tortured_phrase_screening/seed_expectations.json +218 -0
  607. package/vendor/ars/scripts/fixtures/tortured_phrase_screening/snapshot.json +164 -0
  608. package/vendor/ars/scripts/fixtures/tortured_phrase_screening/snapshot_manifest.json +29 -0
  609. package/vendor/ars/scripts/fixtures/transport_bodies/README.md +55 -0
  610. package/vendor/ars/scripts/fixtures/transport_bodies/arxiv/empty_feed.xml +10 -0
  611. package/vendor/ars/scripts/fixtures/transport_bodies/arxiv/error_5xx.html +7 -0
  612. package/vendor/ars/scripts/fixtures/transport_bodies/arxiv/id_hit.xml +26 -0
  613. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/README.md +69 -0
  614. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/cnki_landing_page.html +13 -0
  615. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/error_5xx.html +2 -0
  616. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coordinate_ambiguous.json +16 -0
  617. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coordinate_hit.json +16 -0
  618. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coordinate_zero.json +14 -0
  619. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coverage_hit.json +15 -0
  620. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esearch_coverage_zero.json +13 -0
  621. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_hit.json +43 -0
  622. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_issn_mismatch.json +31 -0
  623. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_no_doi.json +31 -0
  624. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_unknown_ra.json +34 -0
  625. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/esummary_year_mismatch.json +31 -0
  626. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/handle_absent.json +4 -0
  627. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/handle_exists.json +16 -0
  628. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/handle_internal_error.json +4 -0
  629. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/istic_csl_hit.json +25 -0
  630. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/istic_csl_other_title.json +18 -0
  631. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_cnki.json +6 -0
  632. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_crossref.json +6 -0
  633. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_istic.json +6 -0
  634. package/vendor/ars/scripts/fixtures/transport_bodies/chinese_literature/ra_unknown_prefix.json +6 -0
  635. package/vendor/ars/scripts/fixtures/transport_bodies/crossref/doi_hit.json +24 -0
  636. package/vendor/ars/scripts/fixtures/transport_bodies/crossref/error_5xx.html +7 -0
  637. package/vendor/ars/scripts/fixtures/transport_bodies/crossref/title_search_miss.json +15 -0
  638. package/vendor/ars/scripts/fixtures/transport_bodies/openalex/doi_hit.json +29 -0
  639. package/vendor/ars/scripts/fixtures/transport_bodies/openalex/error_5xx.json +4 -0
  640. package/vendor/ars/scripts/fixtures/transport_bodies/openalex/title_search_miss.json +11 -0
  641. package/vendor/ars/scripts/fixtures/transport_bodies/semantic_scholar/doi_hit.json +14 -0
  642. package/vendor/ars/scripts/fixtures/transport_bodies/semantic_scholar/error_5xx.json +3 -0
  643. package/vendor/ars/scripts/fixtures/transport_bodies/semantic_scholar/title_search_miss.json +5 -0
  644. package/vendor/ars/scripts/human_read_attestation_resolver.py +467 -0
  645. package/vendor/ars/scripts/ideation_diversity_assignment_gate.py +430 -0
  646. package/vendor/ars/scripts/inquiry_branch_ledger.py +2540 -0
  647. package/vendor/ars/scripts/legacy/ars_apply_revision_patch_v1_0.py +715 -0
  648. package/vendor/ars/scripts/legacy/check_re_review_synthesis_v1_0.py +2215 -0
  649. package/vendor/ars/scripts/migrate_literature_corpus_to_v3_10.py +223 -0
  650. package/vendor/ars/scripts/migrate_literature_corpus_to_v3_7_3.py +277 -0
  651. package/vendor/ars/scripts/migrate_literature_corpus_to_v3_9_0.py +304 -0
  652. package/vendor/ars/scripts/model_tiering_manifest.json +46 -0
  653. package/vendor/ars/scripts/openalex_client.py +232 -0
  654. package/vendor/ars/scripts/parse_audit_verdict.py +802 -0
  655. package/vendor/ars/scripts/pdf_content_classifier_worker.py +176 -0
  656. package/vendor/ars/scripts/pdf_read_preflight.py +1455 -0
  657. package/vendor/ars/scripts/policy_anchor_disclosure_referee.py +354 -0
  658. package/vendor/ars/scripts/recompute_receipts.py +1414 -0
  659. package/vendor/ars/scripts/render_claim_standing_view.py +374 -0
  660. package/vendor/ars/scripts/render_eval_comment.py +130 -0
  661. package/vendor/ars/scripts/render_harness_retirement_issue.py +167 -0
  662. package/vendor/ars/scripts/repro_lock_validation.py +90 -0
  663. package/vendor/ars/scripts/research_workflow_profile.py +1079 -0
  664. package/vendor/ars/scripts/resolve_human_subjects_authority.py +1158 -0
  665. package/vendor/ars/scripts/resolve_review_target_context.py +683 -0
  666. package/vendor/ars/scripts/resume_e4_record.py +509 -0
  667. package/vendor/ars/scripts/retraction_status.py +484 -0
  668. package/vendor/ars/scripts/review_criteria_binding.py +889 -0
  669. package/vendor/ars/scripts/review_panel_provenance.py +744 -0
  670. package/vendor/ars/scripts/revision_roadmap.py +1967 -0
  671. package/vendor/ars/scripts/run_ci_pytest_manifest.py +116 -0
  672. package/vendor/ars/scripts/run_codex_audit.sh +1191 -0
  673. package/vendor/ars/scripts/run_evals.py +513 -0
  674. package/vendor/ars/scripts/run_ideation_diversity_no_call.py +3505 -0
  675. package/vendor/ars/scripts/run_indirect_prompt_injection_no_call.py +3330 -0
  676. package/vendor/ars/scripts/run_indirect_prompt_injection_probe.py +399 -0
  677. package/vendor/ars/scripts/run_review_criteria_constructive_value.py +1895 -0
  678. package/vendor/ars/scripts/run_role_topology_utility_dry_run.py +606 -0
  679. package/vendor/ars/scripts/score_review_criteria_constructive_value.py +617 -0
  680. package/vendor/ars/scripts/semantic_scholar_client.py +291 -0
  681. package/vendor/ars/scripts/slr_lineage.py +59 -0
  682. package/vendor/ars/scripts/sync_adapter_docs.py +118 -0
  683. package/vendor/ars/scripts/temporal_integrity_audit.py +840 -0
  684. package/vendor/ars/scripts/test_431_exact_or_bust.py +253 -0
  685. package/vendor/ars/scripts/test__eval_threshold_gate.py +125 -0
  686. package/vendor/ars/scripts/test__markdown_lint_util.py +129 -0
  687. package/vendor/ars/scripts/test__next_verified_at_ms.py +256 -0
  688. package/vendor/ars/scripts/test_adjacent_framing_probe_lint.py +171 -0
  689. package/vendor/ars/scripts/test_adjudication_activity.py +1515 -0
  690. package/vendor/ars/scripts/test_ars_anchorize_draft.py +178 -0
  691. package/vendor/ars/scripts/test_ars_apply_revision_patch.py +1335 -0
  692. package/vendor/ars/scripts/test_ars_cache_invalidate.py +51 -0
  693. package/vendor/ars/scripts/test_ars_mark_read.py +910 -0
  694. package/vendor/ars/scripts/test_ars_update_check.py +816 -0
  695. package/vendor/ars/scripts/test_ars_write_scope_guard.py +790 -0
  696. package/vendor/ars/scripts/test_arxiv_client.py +374 -0
  697. package/vendor/ars/scripts/test_audit_schemas.py +560 -0
  698. package/vendor/ars/scripts/test_audit_snapshot_render_section_0.py +105 -0
  699. package/vendor/ars/scripts/test_block_parser.py +259 -0
  700. package/vendor/ars/scripts/test_bootstrap_timeline_yaml.py +148 -0
  701. package/vendor/ars/scripts/test_build_claim_standing_candidate_ledger.py +1203 -0
  702. package/vendor/ars/scripts/test_build_claim_standing_query_plan.py +791 -0
  703. package/vendor/ars/scripts/test_build_submission_packet_manifest.py +2644 -0
  704. package/vendor/ars/scripts/test_check_215_field_norm.py +238 -0
  705. package/vendor/ars/scripts/test_check_216_surface_form.py +341 -0
  706. package/vendor/ars/scripts/test_check_268_nested_commitment_ledger.py +194 -0
  707. package/vendor/ars/scripts/test_check_390_revision_patch_discipline.py +279 -0
  708. package/vendor/ars/scripts/test_check_392_citation_verification_intake.py +144 -0
  709. package/vendor/ars/scripts/test_check_394_submission_policy.py +200 -0
  710. package/vendor/ars/scripts/test_check_439_format_profile.py +252 -0
  711. package/vendor/ars/scripts/test_check_619_disclosure_closeout.py +158 -0
  712. package/vendor/ars/scripts/test_check_630_codex_subscription_transport.py +245 -0
  713. package/vendor/ars/scripts/test_check_669_review_pathway_rule_trace.py +304 -0
  714. package/vendor/ars/scripts/test_check_670_revision_roadmap_integration.py +260 -0
  715. package/vendor/ars/scripts/test_check_673_adjudication_activity.py +367 -0
  716. package/vendor/ars/scripts/test_check_684_review_criteria_binding.py +274 -0
  717. package/vendor/ars/scripts/test_check_agents_mirror_sync.py +137 -0
  718. package/vendor/ars/scripts/test_check_audit_artifact_consistency.py +2133 -0
  719. package/vendor/ars/scripts/test_check_benchmark_report.py +117 -0
  720. package/vendor/ars/scripts/test_check_bibliographic_integrity_signals.py +609 -0
  721. package/vendor/ars/scripts/test_check_calibration_tiers.py +376 -0
  722. package/vendor/ars/scripts/test_check_changelog_covers_merges.py +509 -0
  723. package/vendor/ars/scripts/test_check_ci_pytest_manifest.py +425 -0
  724. package/vendor/ars/scripts/test_check_claim_standing_candidate_ledger_integration.py +256 -0
  725. package/vendor/ars/scripts/test_check_claim_standing_freshness.py +277 -0
  726. package/vendor/ars/scripts/test_check_collaboration_depth_rubric.py +239 -0
  727. package/vendor/ars/scripts/test_check_command_frontmatter_name.py +178 -0
  728. package/vendor/ars/scripts/test_check_committee_correspondence.py +298 -0
  729. package/vendor/ars/scripts/test_check_compliance_report.py +381 -0
  730. package/vendor/ars/scripts/test_check_content_coverage_advisory_integration.py +308 -0
  731. package/vendor/ars/scripts/test_check_control_availability.py +361 -0
  732. package/vendor/ars/scripts/test_check_cross_document_consistency_advisory_integration.py +698 -0
  733. package/vendor/ars/scripts/test_check_cross_model_handoff_contract.py +301 -0
  734. package/vendor/ars/scripts/test_check_cross_model_verification_sync.py +203 -0
  735. package/vendor/ars/scripts/test_check_data_access_level.py +227 -0
  736. package/vendor/ars/scripts/test_check_data_flows.py +382 -0
  737. package/vendor/ars/scripts/test_check_decision_contract.py +387 -0
  738. package/vendor/ars/scripts/test_check_degradation_registry.py +270 -0
  739. package/vendor/ars/scripts/test_check_distribution_surface_claims.py +225 -0
  740. package/vendor/ars/scripts/test_check_domain_evidence_profile.py +439 -0
  741. package/vendor/ars/scripts/test_check_e4_promotion.py +163 -0
  742. package/vendor/ars/scripts/test_check_evals_gold_set.py +312 -0
  743. package/vendor/ars/scripts/test_check_evidence_row_integration.py +187 -0
  744. package/vendor/ars/scripts/test_check_field_norm_severity.py +173 -0
  745. package/vendor/ars/scripts/test_check_firm_rules_sync.py +342 -0
  746. package/vendor/ars/scripts/test_check_heldout_measurement_report.py +1508 -0
  747. package/vendor/ars/scripts/test_check_human_subjects_output_contract.py +129 -0
  748. package/vendor/ars/scripts/test_check_human_subjects_reference_migration.py +756 -0
  749. package/vendor/ars/scripts/test_check_instruction_data_boundary.py +204 -0
  750. package/vendor/ars/scripts/test_check_judge_prompt_version.py +90 -0
  751. package/vendor/ars/scripts/test_check_model_tiering.py +236 -0
  752. package/vendor/ars/scripts/test_check_panel_synthesis.py +1658 -0
  753. package/vendor/ars/scripts/test_check_passport_reset_contract.py +249 -0
  754. package/vendor/ars/scripts/test_check_pattern_eval_manifest.py +381 -0
  755. package/vendor/ars/scripts/test_check_persuasion_invariance_fixtures.py +591 -0
  756. package/vendor/ars/scripts/test_check_phase_conformance.py +4366 -0
  757. package/vendor/ars/scripts/test_check_pipeline_boundary_semantics.py +931 -0
  758. package/vendor/ars/scripts/test_check_pipeline_integrity.py +243 -0
  759. package/vendor/ars/scripts/test_check_policy_anchor_protocol.py +236 -0
  760. package/vendor/ars/scripts/test_check_policy_anchor_table.py +295 -0
  761. package/vendor/ars/scripts/test_check_prisma_trAIce_freshness.py +68 -0
  762. package/vendor/ars/scripts/test_check_promotion_bakeoff_preregistration.py +799 -0
  763. package/vendor/ars/scripts/test_check_ranking_lift.py +377 -0
  764. package/vendor/ars/scripts/test_check_re_review_synthesis.py +3398 -0
  765. package/vendor/ars/scripts/test_check_receipt_enum_sync.py +176 -0
  766. package/vendor/ars/scripts/test_check_repro_lock.py +107 -0
  767. package/vendor/ars/scripts/test_check_reviewer_data_fences.py +334 -0
  768. package/vendor/ars/scripts/test_check_reviewer_finding_contract.py +1107 -0
  769. package/vendor/ars/scripts/test_check_reviewer_role_label.py +491 -0
  770. package/vendor/ars/scripts/test_check_reviewer_scoring_honesty.py +222 -0
  771. package/vendor/ars/scripts/test_check_reviewer_sprint_prompt_sync.py +373 -0
  772. package/vendor/ars/scripts/test_check_revision_claim_drift_suite_v2.py +1925 -0
  773. package/vendor/ars/scripts/test_check_revision_token_conservation.py +398 -0
  774. package/vendor/ars/scripts/test_check_risk_register.py +336 -0
  775. package/vendor/ars/scripts/test_check_role_scoped_contract.py +1104 -0
  776. package/vendor/ars/scripts/test_check_rq_framing_patterns.py +110 -0
  777. package/vendor/ars/scripts/test_check_rubric_weight_consistency.py +32 -0
  778. package/vendor/ars/scripts/test_check_seeded_defect_fixtures.py +392 -0
  779. package/vendor/ars/scripts/test_check_setup_cross_model_parity.py +121 -0
  780. package/vendor/ars/scripts/test_check_spec_consistency.py +1081 -0
  781. package/vendor/ars/scripts/test_check_sprint_contract.py +458 -0
  782. package/vendor/ars/scripts/test_check_stage_capability_matrix.py +698 -0
  783. package/vendor/ars/scripts/test_check_submission_packet_manifest_integration.py +177 -0
  784. package/vendor/ars/scripts/test_check_surface_form_parity.py +417 -0
  785. package/vendor/ars/scripts/test_check_task_type.py +116 -0
  786. package/vendor/ars/scripts/test_check_tools_allowlist.py +835 -0
  787. package/vendor/ars/scripts/test_check_tortured_phrase_screening_integration.py +1306 -0
  788. package/vendor/ars/scripts/test_check_v3_10_134_write_scope.py +251 -0
  789. package/vendor/ars/scripts/test_check_v3_10_policy.py +547 -0
  790. package/vendor/ars/scripts/test_check_v3_6_7_pattern_protection.py +960 -0
  791. package/vendor/ars/scripts/test_check_v3_6_8_audit_scope_block.py +1000 -0
  792. package/vendor/ars/scripts/test_check_v3_6_8_cite_provenance_pipeline.py +454 -0
  793. package/vendor/ars/scripts/test_check_v3_6_8_frontmatter_trust_schema.py +581 -0
  794. package/vendor/ars/scripts/test_check_v3_6_8_mark_read_commands.py +120 -0
  795. package/vendor/ars/scripts/test_check_v3_6_8_pattern_protection.py +1138 -0
  796. package/vendor/ars/scripts/test_check_v3_7_3_three_layer_citation.py +566 -0
  797. package/vendor/ars/scripts/test_check_v3_8_annotation_literal_sync.py +262 -0
  798. package/vendor/ars/scripts/test_check_v3_9_0_triangulation.py +321 -0
  799. package/vendor/ars/scripts/test_check_v3_9_2_phase_boundary.py +190 -0
  800. package/vendor/ars/scripts/test_check_v3_9_4_temporal_verification.py +471 -0
  801. package/vendor/ars/scripts/test_check_version_consistency.py +1462 -0
  802. package/vendor/ars/scripts/test_check_workflow_classification.py +225 -0
  803. package/vendor/ars/scripts/test_chinese_literature_client.py +1889 -0
  804. package/vendor/ars/scripts/test_citation_existence_policy.py +480 -0
  805. package/vendor/ars/scripts/test_citation_verification_summary.py +342 -0
  806. package/vendor/ars/scripts/test_claim_audit_calibration.py +882 -0
  807. package/vendor/ars/scripts/test_claim_audit_finalizer.py +979 -0
  808. package/vendor/ars/scripts/test_claim_audit_pipeline.py +2398 -0
  809. package/vendor/ars/scripts/test_claim_audit_schema.py +1778 -0
  810. package/vendor/ars/scripts/test_claim_intent_manifest.py +666 -0
  811. package/vendor/ars/scripts/test_claim_registry_coverage.py +246 -0
  812. package/vendor/ars/scripts/test_claim_standing_discovery.py +579 -0
  813. package/vendor/ars/scripts/test_claim_standing_pipeline_wiring.py +290 -0
  814. package/vendor/ars/scripts/test_claim_standing_stance_assets.py +399 -0
  815. package/vendor/ars/scripts/test_claim_standing_stance_contracts.py +383 -0
  816. package/vendor/ars/scripts/test_claim_standing_stance_runner.py +349 -0
  817. package/vendor/ars/scripts/test_claim_standing_transmissions.py +605 -0
  818. package/vendor/ars/scripts/test_claim_strength_drift_disposition.py +517 -0
  819. package/vendor/ars/scripts/test_claim_verification_coverage_contract.py +104 -0
  820. package/vendor/ars/scripts/test_contamination_signals.py +1086 -0
  821. package/vendor/ars/scripts/test_content_coverage_advisory.py +1767 -0
  822. package/vendor/ars/scripts/test_cross_document_consistency_advisory.py +1270 -0
  823. package/vendor/ars/scripts/test_cross_model_codex_transport.py +1152 -0
  824. package/vendor/ars/scripts/test_cross_model_handoff.py +571 -0
  825. package/vendor/ars/scripts/test_cross_model_verification_guards.py +792 -0
  826. package/vendor/ars/scripts/test_crossref_client.py +393 -0
  827. package/vendor/ars/scripts/test_dispatch_e4_panel.py +4235 -0
  828. package/vendor/ars/scripts/test_e2e_claim_audit.py +540 -0
  829. package/vendor/ars/scripts/test_eval_harness_workflow.py +140 -0
  830. package/vendor/ars/scripts/test_evals_citation_extraction.py +150 -0
  831. package/vendor/ars/scripts/test_evals_lift_report_schema.py +108 -0
  832. package/vendor/ars/scripts/test_evidence_rows.py +2593 -0
  833. package/vendor/ars/scripts/test_experiment_provenance.py +915 -0
  834. package/vendor/ars/scripts/test_human_read_attestation_resolver.py +477 -0
  835. package/vendor/ars/scripts/test_ideation_diversity_assignment_gate.py +615 -0
  836. package/vendor/ars/scripts/test_indirect_prompt_injection_behavior_probe.py +250 -0
  837. package/vendor/ars/scripts/test_inquiry_branch_ledger.py +2296 -0
  838. package/vendor/ars/scripts/test_migrate_literature_corpus_to_v3_10.py +248 -0
  839. package/vendor/ars/scripts/test_migrate_literature_corpus_to_v3_7_3.py +545 -0
  840. package/vendor/ars/scripts/test_migrate_literature_corpus_to_v3_9_0.py +497 -0
  841. package/vendor/ars/scripts/test_normalize_compat_verdict.py +149 -0
  842. package/vendor/ars/scripts/test_openalex_client.py +490 -0
  843. package/vendor/ars/scripts/test_passport_yaml.py +104 -0
  844. package/vendor/ars/scripts/test_pattern_eval_runtime.py +1295 -0
  845. package/vendor/ars/scripts/test_pdf_read_preflight.py +1943 -0
  846. package/vendor/ars/scripts/test_policy_anchor_disclosure.py +666 -0
  847. package/vendor/ars/scripts/test_reading_probe_lint.py +218 -0
  848. package/vendor/ars/scripts/test_recompute_receipts.py +778 -0
  849. package/vendor/ars/scripts/test_render_claim_standing_view.py +192 -0
  850. package/vendor/ars/scripts/test_render_eval_comment.py +162 -0
  851. package/vendor/ars/scripts/test_render_harness_retirement_issue.py +110 -0
  852. package/vendor/ars/scripts/test_repro_lock_validation_drift.py +100 -0
  853. package/vendor/ars/scripts/test_research_workflow_profile.py +734 -0
  854. package/vendor/ars/scripts/test_resolve_human_subjects_authority.py +1219 -0
  855. package/vendor/ars/scripts/test_resolve_review_target_context.py +703 -0
  856. package/vendor/ars/scripts/test_resume_e4_record.py +315 -0
  857. package/vendor/ars/scripts/test_retraction_status.py +456 -0
  858. package/vendor/ars/scripts/test_review_criteria_binding.py +629 -0
  859. package/vendor/ars/scripts/test_review_panel_provenance.py +565 -0
  860. package/vendor/ars/scripts/test_review_pathway_rule_trace.py +821 -0
  861. package/vendor/ars/scripts/test_revision_roadmap.py +1255 -0
  862. package/vendor/ars/scripts/test_run_ci_pytest_manifest.py +186 -0
  863. package/vendor/ars/scripts/test_run_codex_audit_e2e.py +369 -0
  864. package/vendor/ars/scripts/test_run_evals.py +430 -0
  865. package/vendor/ars/scripts/test_run_guard_launcher.py +500 -0
  866. package/vendor/ars/scripts/test_run_ideation_diversity_no_call.py +1833 -0
  867. package/vendor/ars/scripts/test_run_indirect_prompt_injection_no_call.py +1889 -0
  868. package/vendor/ars/scripts/test_run_review_criteria_constructive_value.py +586 -0
  869. package/vendor/ars/scripts/test_run_role_topology_utility_dry_run.py +428 -0
  870. package/vendor/ars/scripts/test_score_review_criteria_constructive_value.py +340 -0
  871. package/vendor/ars/scripts/test_semantic_scholar_client.py +554 -0
  872. package/vendor/ars/scripts/test_slr_lineage_emission.py +230 -0
  873. package/vendor/ars/scripts/test_socratic_rq_non_generation_contract.py +173 -0
  874. package/vendor/ars/scripts/test_temporal_integrity_audit.py +438 -0
  875. package/vendor/ars/scripts/test_text_similarity.py +95 -0
  876. package/vendor/ars/scripts/test_title_fuzzy_false_positive.py +111 -0
  877. package/vendor/ars/scripts/test_tortured_phrase_screening.py +2959 -0
  878. package/vendor/ars/scripts/test_transport_fixture_citation_gate.py +338 -0
  879. package/vendor/ars/scripts/test_uncited_assertion.py +558 -0
  880. package/vendor/ars/scripts/test_v3_6_7_phase_6_6.py +1279 -0
  881. package/vendor/ars/scripts/test_validate_compliance_fixtures.py +36 -0
  882. package/vendor/ars/scripts/test_validate_ideation_diversity_assets.py +230 -0
  883. package/vendor/ars/scripts/test_venue_disclosure_contract.py +755 -0
  884. package/vendor/ars/scripts/test_verification_cache.py +280 -0
  885. package/vendor/ars/scripts/test_verification_gate.py +461 -0
  886. package/vendor/ars/scripts/test_verify_passport_cli.py +123 -0
  887. package/vendor/ars/scripts/test_verify_submission_package.py +1407 -0
  888. package/vendor/ars/scripts/test_version_records_schema.py +211 -0
  889. package/vendor/ars/scripts/tortured_phrase_screening.py +3502 -0
  890. package/vendor/ars/scripts/uncited_assertion_detector.py +254 -0
  891. package/vendor/ars/scripts/v3_6_7_inversion_manifest.json +9 -0
  892. package/vendor/ars/scripts/v3_6_8_inversion_manifest.json +10 -0
  893. package/vendor/ars/scripts/validate_claim_standing_stance_assets.py +249 -0
  894. package/vendor/ars/scripts/validate_compliance_fixtures.py +56 -0
  895. package/vendor/ars/scripts/validate_ideation_diversity_assets.py +303 -0
  896. package/vendor/ars/scripts/venue_disclosure_contract_harness.py +837 -0
  897. package/vendor/ars/scripts/verification_cache.py +276 -0
  898. package/vendor/ars/scripts/verification_gate/__init__.py +345 -0
  899. package/vendor/ars/scripts/verify_passport.py +133 -0
  900. package/vendor/ars/scripts/verify_submission_package.py +1657 -0
  901. package/vendor/ars/shared/agents/compliance_agent.md +136 -0
  902. package/vendor/ars/shared/artifact_reproducibility_pattern.md +173 -0
  903. package/vendor/ars/shared/benchmark_report.schema.json +81 -0
  904. package/vendor/ars/shared/benchmark_report_pattern.md +180 -0
  905. package/vendor/ars/shared/bibliographic_integrity_signals.md +142 -0
  906. package/vendor/ars/shared/collaboration_depth_rubric.md +154 -0
  907. package/vendor/ars/shared/compliance_checkpoint_protocol.md +162 -0
  908. package/vendor/ars/shared/compliance_report.schema.json +187 -0
  909. package/vendor/ars/shared/contracts/README.md +938 -0
  910. package/vendor/ars/shared/contracts/activity/adjudication_activity_input.schema.json +555 -0
  911. package/vendor/ars/shared/contracts/activity/adjudication_activity_store.schema.json +560 -0
  912. package/vendor/ars/shared/contracts/audit/audit_jsonl.schema.json +128 -0
  913. package/vendor/ars/shared/contracts/audit/audit_sidecar.schema.json +169 -0
  914. package/vendor/ars/shared/contracts/audit/audit_verdict.schema.json +133 -0
  915. package/vendor/ars/shared/contracts/audit/cross_document_consistency_advisory.schema.json +480 -0
  916. package/vendor/ars/shared/contracts/audit/cross_document_consistency_advisory_draft.schema.json +564 -0
  917. package/vendor/ars/shared/contracts/audit/cross_document_source_manifest.schema.json +202 -0
  918. package/vendor/ars/shared/contracts/audit/tortured_phrase_advisory.schema.json +1362 -0
  919. package/vendor/ars/shared/contracts/audit/tortured_phrase_snapshot.schema.json +208 -0
  920. package/vendor/ars/shared/contracts/audit/tortured_phrase_snapshot_manifest.schema.json +335 -0
  921. package/vendor/ars/shared/contracts/capability/stage_capability_matrix.json +434 -0
  922. package/vendor/ars/shared/contracts/claim_standing/candidate_ledger.schema.json +705 -0
  923. package/vendor/ars/shared/contracts/claim_standing/query_plan.schema.json +389 -0
  924. package/vendor/ars/shared/contracts/claim_standing/query_plan_v1_1.schema.json +782 -0
  925. package/vendor/ars/shared/contracts/claim_standing/retrieval_input.schema.json +440 -0
  926. package/vendor/ars/shared/contracts/claim_standing/stance_record.schema.json +460 -0
  927. package/vendor/ars/shared/contracts/claim_standing/transmission_ledger.schema.json +282 -0
  928. package/vendor/ars/shared/contracts/cross_model/codex_citation_receipt.schema.json +157 -0
  929. package/vendor/ars/shared/contracts/cross_model/codex_citation_request.schema.json +23 -0
  930. package/vendor/ars/shared/contracts/cross_model/promotion_bakeoff_sealed_commitment.schema.json +55 -0
  931. package/vendor/ars/shared/contracts/cross_model/promotion_bakeoff_sealed_reveal.schema.json +50 -0
  932. package/vendor/ars/shared/contracts/degradation_registry.json +428 -0
  933. package/vendor/ars/shared/contracts/evaluator/full.json +126 -0
  934. package/vendor/ars/shared/contracts/evidence/claim_registry.schema.json +50 -0
  935. package/vendor/ars/shared/contracts/evidence/claim_registry_coverage_report.schema.json +79 -0
  936. package/vendor/ars/shared/contracts/evidence/evidence_row.schema.json +504 -0
  937. package/vendor/ars/shared/contracts/evidence/evidence_row_v1_1.schema.json +364 -0
  938. package/vendor/ars/shared/contracts/evidence/evidence_row_v1_2.schema.json +714 -0
  939. package/vendor/ars/shared/contracts/evidence/evidence_row_v1_3.schema.json +524 -0
  940. package/vendor/ars/shared/contracts/human_subjects/authority_profile_registry.schema.json +497 -0
  941. package/vendor/ars/shared/contracts/human_subjects/committee_correspondence.schema.json +253 -0
  942. package/vendor/ars/shared/contracts/human_subjects/content_coverage_advisory.schema.json +620 -0
  943. package/vendor/ars/shared/contracts/human_subjects/irb_context_record.schema.json +329 -0
  944. package/vendor/ars/shared/contracts/human_subjects/resolved_authority_context.schema.json +347 -0
  945. package/vendor/ars/shared/contracts/human_subjects/review_pathway_rule_trace.schema.json +265 -0
  946. package/vendor/ars/shared/contracts/human_subjects/review_pathway_trace_request.schema.json +127 -0
  947. package/vendor/ars/shared/contracts/human_subjects/submission_packet_inventory.schema.json +240 -0
  948. package/vendor/ars/shared/contracts/human_subjects/submission_packet_manifest.schema.json +999 -0
  949. package/vendor/ars/shared/contracts/passport/audit_artifact_entry.schema.json +266 -0
  950. package/vendor/ars/shared/contracts/passport/bibliographic_integrity_signal.schema.json +1676 -0
  951. package/vendor/ars/shared/contracts/passport/citation_provenance.schema.json +107 -0
  952. package/vendor/ars/shared/contracts/passport/citation_verification_summary.schema.json +164 -0
  953. package/vendor/ars/shared/contracts/passport/claim_audit_result.schema.json +124 -0
  954. package/vendor/ars/shared/contracts/passport/claim_drift.schema.json +58 -0
  955. package/vendor/ars/shared/contracts/passport/claim_intent_manifest.schema.json +107 -0
  956. package/vendor/ars/shared/contracts/passport/constraint_violation.schema.json +65 -0
  957. package/vendor/ars/shared/contracts/passport/experiment_alignment_result.schema.json +69 -0
  958. package/vendor/ars/shared/contracts/passport/experiment_provenance_entry.schema.json +169 -0
  959. package/vendor/ars/shared/contracts/passport/human_read_log.schema.json +86 -0
  960. package/vendor/ars/shared/contracts/passport/inquiry_ledger_ref.schema.json +22 -0
  961. package/vendor/ars/shared/contracts/passport/literature_corpus_entry.schema.json +650 -0
  962. package/vendor/ars/shared/contracts/passport/preregistration_artifact.schema.json +132 -0
  963. package/vendor/ars/shared/contracts/passport/rejection_log.schema.json +89 -0
  964. package/vendor/ars/shared/contracts/passport/reset_ledger_entry.schema.json +158 -0
  965. package/vendor/ars/shared/contracts/passport/temporal_audit_results.schema.json +208 -0
  966. package/vendor/ars/shared/contracts/passport/terminal_policies.schema.json +50 -0
  967. package/vendor/ars/shared/contracts/passport/timeline.schema.json +102 -0
  968. package/vendor/ars/shared/contracts/passport/uncited_assertion.schema.json +56 -0
  969. package/vendor/ars/shared/contracts/passport/uncited_audit_failure.schema.json +72 -0
  970. package/vendor/ars/shared/contracts/passport/user_attested_read_resolution.schema.json +87 -0
  971. package/vendor/ars/shared/contracts/passport/version_records.schema.json +138 -0
  972. package/vendor/ars/shared/contracts/patch/block_manifest.schema.json +45 -0
  973. package/vendor/ars/shared/contracts/patch/legacy/v1_0/revision_patch.schema.json +110 -0
  974. package/vendor/ars/shared/contracts/patch/revision_patch.schema.json +250 -0
  975. package/vendor/ars/shared/contracts/pdf/pdf_content_classifier_diagnostic.schema.json +39 -0
  976. package/vendor/ars/shared/contracts/pdf/pdf_content_classifier_worker.schema.json +88 -0
  977. package/vendor/ars/shared/contracts/pdf/pdf_read_preflight.schema.json +227 -0
  978. package/vendor/ars/shared/contracts/re_review/input_manifest.schema.json +161 -0
  979. package/vendor/ars/shared/contracts/re_review/legacy/v1_0/input_manifest.schema.json +134 -0
  980. package/vendor/ars/shared/contracts/re_review/legacy/v1_0/precommitment.schema.json +193 -0
  981. package/vendor/ars/shared/contracts/re_review/legacy/v1_0/traceability.schema.json +841 -0
  982. package/vendor/ars/shared/contracts/re_review/legacy/v1_0/verdict_record.schema.json +244 -0
  983. package/vendor/ars/shared/contracts/re_review/precommitment.schema.json +193 -0
  984. package/vendor/ars/shared/contracts/re_review/traceability.schema.json +916 -0
  985. package/vendor/ars/shared/contracts/re_review/verdict_record.schema.json +245 -0
  986. package/vendor/ars/shared/contracts/research_workflow/inquiry_branch_ledger.schema.json +449 -0
  987. package/vendor/ars/shared/contracts/research_workflow/research_workflow_profile.schema.json +222 -0
  988. package/vendor/ars/shared/contracts/research_workflow/research_workflow_profile_selection_receipt.schema.json +111 -0
  989. package/vendor/ars/shared/contracts/review_target/constructive_review_findings.schema.json +172 -0
  990. package/vendor/ars/shared/contracts/review_target/criteria_registry.schema.json +97 -0
  991. package/vendor/ars/shared/contracts/review_target/review_criteria_binding_manifest.schema.json +235 -0
  992. package/vendor/ars/shared/contracts/review_target/review_criteria_source_receipt.schema.json +158 -0
  993. package/vendor/ars/shared/contracts/review_target/review_target_context.schema.json +106 -0
  994. package/vendor/ars/shared/contracts/review_target/review_target_declaration.schema.json +118 -0
  995. package/vendor/ars/shared/contracts/reviewer/full.json +114 -0
  996. package/vendor/ars/shared/contracts/reviewer/methodology_focus.json +75 -0
  997. package/vendor/ars/shared/contracts/reviewer/review_panel_provenance.schema.json +263 -0
  998. package/vendor/ars/shared/contracts/reviewer/review_panel_provenance_carrier.schema.json +122 -0
  999. package/vendor/ars/shared/contracts/reviewer/review_panel_provenance_input.schema.json +120 -0
  1000. package/vendor/ars/shared/contracts/revision/author_adjudication.schema.json +251 -0
  1001. package/vendor/ars/shared/contracts/revision/author_adjudication_input.schema.json +25 -0
  1002. package/vendor/ars/shared/contracts/revision/claim_strength_drift_disposition.schema.json +97 -0
  1003. package/vendor/ars/shared/contracts/revision/claim_strength_drift_disposition_input.schema.json +80 -0
  1004. package/vendor/ars/shared/contracts/revision/claim_strength_drift_findings.schema.json +139 -0
  1005. package/vendor/ars/shared/contracts/revision/claim_surface_manifest.schema.json +99 -0
  1006. package/vendor/ars/shared/contracts/revision/integrity_correction_authorization.schema.json +140 -0
  1007. package/vendor/ars/shared/contracts/revision/integrity_correction_authorization_input.schema.json +28 -0
  1008. package/vendor/ars/shared/contracts/revision/integrity_correction_list.schema.json +48 -0
  1009. package/vendor/ars/shared/contracts/revision/integrity_pass_receipt.schema.json +16 -0
  1010. package/vendor/ars/shared/contracts/revision/revision_evidence_bundle.schema.json +134 -0
  1011. package/vendor/ars/shared/contracts/revision/revision_roadmap.schema.json +334 -0
  1012. package/vendor/ars/shared/contracts/submission/format_profile.example.yaml +33 -0
  1013. package/vendor/ars/shared/contracts/submission/format_profile.schema.json +102 -0
  1014. package/vendor/ars/shared/contracts/submission/submission_verification_report.schema.json +233 -0
  1015. package/vendor/ars/shared/contracts/submission/venue_profile.schema.json +114 -0
  1016. package/vendor/ars/shared/contracts/writer/full.json +87 -0
  1017. package/vendor/ars/shared/cross_model_verification.md +714 -0
  1018. package/vendor/ars/shared/evals_lift_report.schema.json +141 -0
  1019. package/vendor/ars/shared/ground_truth_isolation_pattern.md +275 -0
  1020. package/vendor/ars/shared/handoff_schemas.md +1209 -0
  1021. package/vendor/ars/shared/human_subjects_authority_registry.json +1278 -0
  1022. package/vendor/ars/shared/mode_spectrum.md +57 -0
  1023. package/vendor/ars/shared/model_tiering.md +83 -0
  1024. package/vendor/ars/shared/policy_data/nature_policy.md +56 -0
  1025. package/vendor/ars/shared/prisma_trAIce_protocol.md +157 -0
  1026. package/vendor/ars/shared/raise_framework.md +129 -0
  1027. package/vendor/ars/shared/references/authority_content_coverage_advisory_protocol.md +275 -0
  1028. package/vendor/ars/shared/references/claim_standing_candidate_ledger_protocol.md +66 -0
  1029. package/vendor/ars/shared/references/claim_strength_ladder.md +93 -0
  1030. package/vendor/ars/shared/references/cross_document_consistency_advisory_protocol.md +263 -0
  1031. package/vendor/ars/shared/references/evidence_row_protocol.md +260 -0
  1032. package/vendor/ars/shared/references/firm_rules.md +90 -0
  1033. package/vendor/ars/shared/references/human_subjects_authority_protocol.md +274 -0
  1034. package/vendor/ars/shared/references/intent_clarification_protocol.md +168 -0
  1035. package/vendor/ars/shared/references/irb_terminology_glossary.md +229 -0
  1036. package/vendor/ars/shared/references/protected_hedging_phrases.md +118 -0
  1037. package/vendor/ars/shared/references/psychometric_terminology_glossary.md +109 -0
  1038. package/vendor/ars/shared/references/review_criteria_consumer_protocol.md +238 -0
  1039. package/vendor/ars/shared/references/review_pathway_rule_trace_protocol.md +166 -0
  1040. package/vendor/ars/shared/references/submission_packet_manifest_protocol.md +292 -0
  1041. package/vendor/ars/shared/references/word_count_conventions.md +124 -0
  1042. package/vendor/ars/shared/research_workflow_profiles/field_general.json +1 -0
  1043. package/vendor/ars/shared/review_criteria_registry.json +207 -0
  1044. package/vendor/ars/shared/review_criteria_sources/msr-2027-technical-papers.2026-08-24.json +46 -0
  1045. package/vendor/ars/shared/review_criteria_sources/sigsoft-empirical-standards.2026-08-24.json +31 -0
  1046. package/vendor/ars/shared/sprint_contract.schema.json +482 -0
  1047. package/vendor/ars/shared/style_calibration_protocol.md +151 -0
  1048. package/vendor/ars/shared/templates/codex_audit_multifile_template.md +263 -0
  1049. package/vendor/ars/tools/release-discipline/.toolkit-version +1 -0
  1050. package/vendor/ars/tools/release-discipline/README.md +4 -0
  1051. package/vendor/ars/tools/release-discipline/scripts/_release_doc_alignment_schema.py +1011 -0
  1052. package/vendor/ars/tools/release-discipline/scripts/check_command_invariants.py +497 -0
  1053. package/vendor/ars/tools/release-discipline/scripts/check_release_doc_alignment.py +263 -0
  1054. package/vendor/ars/tools/release-discipline/scripts/sync-toolkit.sh +147 -0
  1055. package/vendor/windows/NOTICE.md +12 -0
  1056. package/vendor/windows/arm64/fd.exe +0 -0
  1057. package/vendor/windows/arm64/licenses/fd/LICENSE-APACHE +201 -0
  1058. package/vendor/windows/arm64/licenses/fd/LICENSE-MIT +21 -0
  1059. package/vendor/windows/arm64/licenses/ripgrep/COPYING +3 -0
  1060. package/vendor/windows/arm64/licenses/ripgrep/LICENSE-MIT +21 -0
  1061. package/vendor/windows/arm64/licenses/ripgrep/UNLICENSE +24 -0
  1062. package/vendor/windows/arm64/rg.exe +0 -0
  1063. package/vendor/windows/x64/fd.exe +0 -0
  1064. package/vendor/windows/x64/licenses/fd/LICENSE-APACHE +201 -0
  1065. package/vendor/windows/x64/licenses/fd/LICENSE-MIT +21 -0
  1066. package/vendor/windows/x64/licenses/ripgrep/COPYING +3 -0
  1067. package/vendor/windows/x64/licenses/ripgrep/LICENSE-MIT +21 -0
  1068. package/vendor/windows/x64/licenses/ripgrep/UNLICENSE +24 -0
  1069. package/vendor/windows/x64/rg.exe +0 -0
@@ -0,0 +1,2644 @@
1
+ #!/usr/bin/env python3
2
+ """Hermetic contract, replay, and adversarial tests for issue #667."""
3
+ from __future__ import annotations
4
+
5
+ import ast
6
+ import copy
7
+ import hashlib
8
+ import json
9
+ import os
10
+ import shutil
11
+ import socket
12
+ import subprocess
13
+ import sys
14
+ from pathlib import Path
15
+ from typing import Any, Callable
16
+
17
+ import pytest
18
+ from jsonschema import Draft202012Validator, FormatChecker
19
+
20
+ import build_submission_packet_manifest as packet_runtime
21
+ from build_submission_packet_manifest import (
22
+ ContractError,
23
+ build_submission_packet_manifest,
24
+ observe_submission_packet,
25
+ render_submission_packet_manifest,
26
+ validate_submission_packet_inventory,
27
+ validate_submission_packet_manifest,
28
+ )
29
+ from resolve_human_subjects_authority import digest, resolve
30
+
31
+
32
+ REPO_ROOT = Path(__file__).resolve().parents[1]
33
+ FIXTURES = REPO_ROOT / "scripts" / "fixtures" / "submission_packet_manifest"
34
+ PACKET_ROOT = FIXTURES / "packet"
35
+ BASE_INVENTORY = FIXTURES / "base_inventory.json"
36
+ AUTHORITY_FIXTURES = REPO_ROOT / "scripts" / "fixtures" / "human_subjects_authority"
37
+ REGISTRY_PATH = REPO_ROOT / "shared" / "human_subjects_authority_registry.json"
38
+ CONTRACTS = REPO_ROOT / "shared" / "contracts" / "human_subjects"
39
+ RUNTIME = REPO_ROOT / "scripts" / "build_submission_packet_manifest.py"
40
+
41
+ INVENTORY_SCHEMA = "submission_packet_inventory.schema.json"
42
+ MANIFEST_SCHEMA = "submission_packet_manifest.schema.json"
43
+ BOUNDARY_FOOTER = (
44
+ "Human-subjects boundary: This output does not authorize recruitment, "
45
+ "consent, access to identifiable data, intervention, or data collection."
46
+ )
47
+ RENDERED_BOUNDARY = (
48
+ "> **Human-subjects boundary:** This output does not authorize recruitment, "
49
+ "consent, access to identifiable data, intervention, or data collection."
50
+ )
51
+ ENVELOPE_EXPECTED = {
52
+ "packet_v1.non_clinical": True,
53
+ "packet_v1.single_institution": True,
54
+ "packet_v1.competent_adults_only": True,
55
+ "packet_v1.biospecimens_involved": False,
56
+ "packet_v1.regulated_clinical_trial": False,
57
+ "packet_v1.cross_border_material_transfer": False,
58
+ "packet_v1.multisite_reliance": False,
59
+ }
60
+
61
+
62
+ def _json(path: Path) -> dict[str, Any]:
63
+ value = json.loads(path.read_text(encoding="utf-8"))
64
+ assert isinstance(value, dict)
65
+ return value
66
+
67
+
68
+ def _write_json(path: Path, value: dict[str, Any]) -> None:
69
+ path.write_text(
70
+ json.dumps(value, ensure_ascii=False, sort_keys=True, indent=2) + "\n",
71
+ encoding="utf-8",
72
+ )
73
+
74
+
75
+ def _inventory() -> dict[str, Any]:
76
+ return _json(BASE_INVENTORY)
77
+
78
+
79
+ def _registry() -> dict[str, Any]:
80
+ return _json(REGISTRY_PATH)
81
+
82
+
83
+ def _context(name: str = "us-gdpr-two-axis.json") -> dict[str, Any]:
84
+ context = _json(AUTHORITY_FIXTURES / name)
85
+ known = {row["fact_id"] for row in context["declared_facts"]}
86
+ for fact_id, value in ENVELOPE_EXPECTED.items():
87
+ if fact_id not in known:
88
+ context["declared_facts"].append(
89
+ {
90
+ "fact_id": fact_id,
91
+ "value_type": "boolean",
92
+ "state": "declared",
93
+ "value": value,
94
+ "provenance": "author_declared",
95
+ }
96
+ )
97
+ return context
98
+
99
+
100
+ def _authority(
101
+ name: str = "us-gdpr-two-axis.json",
102
+ ) -> tuple[dict[str, Any], dict[str, Any], dict[str, Any]]:
103
+ context = _context(name)
104
+ registry = _registry()
105
+ return context, registry, resolve(context, registry)
106
+
107
+
108
+ def _build(
109
+ inventory: dict[str, Any] | None = None,
110
+ packet_root: Path = PACKET_ROOT,
111
+ context: dict[str, Any] | None = None,
112
+ registry: dict[str, Any] | None = None,
113
+ resolved: dict[str, Any] | None = None,
114
+ ) -> dict[str, Any]:
115
+ if context is None and registry is None and resolved is None:
116
+ context, registry, resolved = _authority()
117
+ return build_submission_packet_manifest(
118
+ _inventory() if inventory is None else inventory,
119
+ packet_root,
120
+ context=context,
121
+ registry=registry,
122
+ resolved=resolved,
123
+ )
124
+
125
+
126
+ def _validator(name: str) -> Draft202012Validator:
127
+ schema = _json(CONTRACTS / name)
128
+ return Draft202012Validator(schema, format_checker=FormatChecker())
129
+
130
+
131
+ def _artifact(inventory: dict[str, Any], artifact_id: str) -> dict[str, Any]:
132
+ return next(row for row in inventory["artifacts"] if row["artifact_id"] == artifact_id)
133
+
134
+
135
+ def _entry(
136
+ manifest: dict[str, Any], requirement_id: str, evidence_id: str | None = None
137
+ ) -> dict[str, Any]:
138
+ matches = [
139
+ row
140
+ for row in manifest["entries"]
141
+ if row["requirement_ref"]["requirement_id"] == requirement_id
142
+ and (
143
+ evidence_id is None
144
+ or row["evidence_ref"]["evidence_id"] == evidence_id
145
+ )
146
+ ]
147
+ assert len(matches) == 1, (requirement_id, evidence_id, matches)
148
+ return matches[0]
149
+
150
+
151
+ def _all_keys(value: Any) -> set[str]:
152
+ if isinstance(value, dict):
153
+ return set(value) | set().union(*(_all_keys(item) for item in value.values()), set())
154
+ if isinstance(value, list):
155
+ return set().union(*(_all_keys(item) for item in value), set())
156
+ return set()
157
+
158
+
159
+ def _repin_manifest(manifest: dict[str, Any]) -> None:
160
+ manifest.pop("manifest_digest", None)
161
+ manifest["manifest_digest"] = digest(manifest)
162
+
163
+
164
+ def _repin_overlay(context: dict[str, Any], overlay: dict[str, Any]) -> None:
165
+ unsigned = copy.deepcopy(overlay)
166
+ unsigned.pop("overlay_digest", None)
167
+ overlay["overlay_digest"] = digest(unsigned)
168
+ selected = next(
169
+ row
170
+ for row in context["selected_overlays"]
171
+ if row["overlay_id"] == overlay["overlay_id"]
172
+ )
173
+ selected["overlay_digest"] = overlay["overlay_digest"]
174
+ display = next(
175
+ row
176
+ for axis in context["display_precedence"]
177
+ for row in axis["ordered_authorities"]
178
+ if row["authority_id"] == overlay["overlay_id"]
179
+ )
180
+ display["authority_digest"] = overlay["overlay_digest"]
181
+
182
+
183
+ def _repin_profile(context: dict[str, Any], profile: dict[str, Any]) -> None:
184
+ unsigned = copy.deepcopy(profile)
185
+ unsigned.pop("profile_digest", None)
186
+ profile["profile_digest"] = digest(unsigned)
187
+ selected = next(
188
+ row
189
+ for row in context["selected_profiles"]
190
+ if row["profile_id"] == profile["profile_id"]
191
+ )
192
+ selected["profile_digest"] = profile["profile_digest"]
193
+ display = next(
194
+ row
195
+ for axis in context["display_precedence"]
196
+ for row in axis["ordered_authorities"]
197
+ if row["authority_kind"] == "profile"
198
+ and row["authority_id"] == profile["profile_id"]
199
+ )
200
+ display["authority_digest"] = profile["profile_digest"]
201
+
202
+
203
+ def _packet_copy(tmp_path: Path) -> Path:
204
+ target = tmp_path / "packet"
205
+ shutil.copytree(PACKET_ROOT, target)
206
+ return target
207
+
208
+
209
+ def _reason_codes(manifest: dict[str, Any]) -> set[str]:
210
+ return {row["code"] for row in manifest["unresolved_reasons"]}
211
+
212
+
213
+ def _synthetic_overlay_authority() -> tuple[
214
+ dict[str, Any], dict[str, Any], dict[str, Any], dict[str, Any]
215
+ ]:
216
+ """Add test-only certificate and exactly profiled waiver rows."""
217
+ context = _context()
218
+ registry = _registry()
219
+ us_profile = next(
220
+ row
221
+ for row in registry["profiles"]
222
+ if row["profile_id"] == "us.hhs.45-cfr-46.subpart-a"
223
+ )
224
+ template = next(
225
+ row
226
+ for row in us_profile["requirements"]
227
+ if row["requirement_id"] == "us.45cfr46.116.informed-consent"
228
+ )
229
+ base = copy.deepcopy(template)
230
+ base.update(
231
+ {
232
+ "requirement_id": "synthetic.packet.base-consent",
233
+ "title": "Synthetic packet base attachment",
234
+ "summary": "Test-only structural attachment row.",
235
+ "obligated_actor": "investigator",
236
+ "consumer_scopes": ["submission_packet"],
237
+ "applies_if": {
238
+ "op": "fact_equals",
239
+ "fact_id": "activity.human_subjects",
240
+ "value": True,
241
+ },
242
+ "structured_expectations": [
243
+ {
244
+ "field_id": "synthetic.prose-meaning-must-never-be-read",
245
+ "operator": "present",
246
+ "value": True,
247
+ }
248
+ ],
249
+ "evidence_expected": [
250
+ {
251
+ "evidence_id": "synthetic.base-consent",
252
+ "held_by": "investigator",
253
+ "artifact_type": "consent_materials",
254
+ "description": "Test-only base attachment.",
255
+ }
256
+ ],
257
+ "waiver_or_exception_route": {
258
+ "state": "profiled",
259
+ "requirement_ids": ["synthetic.packet.waiver-route"],
260
+ "decision_maker_role": "institutional_review_office",
261
+ },
262
+ "interaction": {
263
+ "collision_key": "synthetic.packet.base",
264
+ "policy": "parallel_authorities",
265
+ },
266
+ }
267
+ )
268
+ route = copy.deepcopy(template)
269
+ route.update(
270
+ {
271
+ "requirement_id": "synthetic.packet.waiver-route",
272
+ "title": "Synthetic profiled route record",
273
+ "summary": "Test-only route evidence row.",
274
+ "obligated_actor": "investigator",
275
+ "consumer_scopes": ["submission_packet"],
276
+ "applies_if": {
277
+ "op": "fact_equals",
278
+ "fact_id": "activity.human_subjects",
279
+ "value": True,
280
+ },
281
+ "structured_expectations": [],
282
+ "evidence_expected": [
283
+ {
284
+ "evidence_id": "synthetic.waiver-decision",
285
+ "held_by": "investigator",
286
+ "artifact_type": "training_certificate",
287
+ "description": "Test-only located decision artifact.",
288
+ }
289
+ ],
290
+ "waiver_or_exception_route": {
291
+ "state": "not_applicable",
292
+ "requirement_ids": [],
293
+ "decision_maker_role": None,
294
+ },
295
+ "interaction": {
296
+ "collision_key": "synthetic.packet.route",
297
+ "policy": "parallel_authorities",
298
+ },
299
+ }
300
+ )
301
+ overlay = {
302
+ "overlay_id": "synthetic.institution.packet-routes",
303
+ "overlay_version": "1.0",
304
+ "overlay_digest": "0" * 64,
305
+ "overlay_kind": "institutional",
306
+ "axis": "review_ethics",
307
+ "issuer": "Synthetic Institution",
308
+ "title": "Synthetic packet route overlay",
309
+ "authority_scope_ids": list(us_profile["authority_scope_ids"]),
310
+ "target_profiles": [
311
+ {
312
+ "axis": us_profile["axis"],
313
+ "profile_id": us_profile["profile_id"],
314
+ "profile_version": us_profile["profile_version"],
315
+ "profile_digest": us_profile["profile_digest"],
316
+ }
317
+ ],
318
+ "source_ids": list(us_profile["source_ids"]),
319
+ "operation": "add",
320
+ "requirements_removed": False,
321
+ "requirements": [base, route],
322
+ }
323
+ unsigned = copy.deepcopy(overlay)
324
+ unsigned.pop("overlay_digest")
325
+ overlay["overlay_digest"] = digest(unsigned)
326
+ registry["overlays"].append(overlay)
327
+ context["overlay_selection_state"]["institutional"] = "selected"
328
+ context["selected_overlays"].append(
329
+ {
330
+ "overlay_kind": "institutional",
331
+ "axis": "review_ethics",
332
+ "overlay_id": overlay["overlay_id"],
333
+ "overlay_version": overlay["overlay_version"],
334
+ "overlay_digest": overlay["overlay_digest"],
335
+ }
336
+ )
337
+ review = next(
338
+ row for row in context["display_precedence"] if row["axis"] == "review_ethics"
339
+ )
340
+ review["ordered_authorities"].append(
341
+ {
342
+ "authority_kind": "institutional_overlay",
343
+ "axis": "review_ethics",
344
+ "authority_id": overlay["overlay_id"],
345
+ "authority_version": overlay["overlay_version"],
346
+ "authority_digest": overlay["overlay_digest"],
347
+ }
348
+ )
349
+ return context, registry, resolve(context, registry), overlay
350
+
351
+
352
+ def _waiver_inventory() -> dict[str, Any]:
353
+ inventory = _inventory()
354
+ inventory["waiver_or_exception_claims"] = [
355
+ {
356
+ "requirement_id": "synthetic.packet.base-consent",
357
+ "route_requirement_ids": ["synthetic.packet.waiver-route"],
358
+ "decision_artifact_id": "fixture.training-certificate",
359
+ "declared_by": "author",
360
+ }
361
+ ]
362
+ return inventory
363
+
364
+
365
+ def test_schemas_and_base_inventory_are_closed_and_valid() -> None:
366
+ for name in (INVENTORY_SCHEMA, MANIFEST_SCHEMA):
367
+ Draft202012Validator.check_schema(_json(CONTRACTS / name))
368
+ inventory = _inventory()
369
+ _validator(INVENTORY_SCHEMA).validate(inventory)
370
+ validate_submission_packet_inventory(inventory)
371
+
372
+
373
+ def test_all_seven_capability_facts_are_registry_catalogued_booleans() -> None:
374
+ definitions = {row["fact_id"]: row for row in _registry()["fact_definitions"]}
375
+ assert set(ENVELOPE_EXPECTED) <= set(definitions)
376
+ for fact_id in ENVELOPE_EXPECTED:
377
+ assert definitions[fact_id]["value_type"] == "boolean"
378
+ assert definitions[fact_id]["allowed_values"] is None
379
+
380
+
381
+ def test_base_fixture_observation_is_explicit_and_scan_free() -> None:
382
+ observed = observe_submission_packet(_inventory(), PACKET_ROOT)
383
+ assert {row["artifact_id"] for row in observed} == {
384
+ "fixture.us-consent",
385
+ "fixture.tw-consent",
386
+ "fixture.training-certificate",
387
+ }
388
+
389
+
390
+ def test_manifest_schema_and_deterministic_replay_pass() -> None:
391
+ inventory = _inventory()
392
+ context, registry, resolved = _authority()
393
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
394
+ _validator(MANIFEST_SCHEMA).validate(manifest)
395
+ validate_submission_packet_manifest(
396
+ manifest,
397
+ inventory,
398
+ PACKET_ROOT,
399
+ context=context,
400
+ registry=registry,
401
+ resolved=resolved,
402
+ )
403
+
404
+
405
+ @pytest.mark.parametrize(
406
+ "mutate",
407
+ [
408
+ lambda value: value.__setitem__("unknown", True),
409
+ lambda value: value["artifacts"].append(copy.deepcopy(value["artifacts"][0])),
410
+ lambda value: value["artifacts"][1].__setitem__(
411
+ "relative_path", value["artifacts"][0]["relative_path"]
412
+ ),
413
+ lambda value: value["artifacts"][0]["evidence_bindings"].append(
414
+ copy.deepcopy(value["artifacts"][0]["evidence_bindings"][0])
415
+ ),
416
+ lambda value: value["packet_responsibility_role_ids"].append(
417
+ value["packet_responsibility_role_ids"][0]
418
+ ),
419
+ lambda value: value["authorization_status_input"].update(
420
+ {"value": "not_provided", "source_reference": "invented.source"}
421
+ ),
422
+ lambda value: value["artifacts"][0]["declared_structure"].update(
423
+ {"document_date": "2026-02-30"}
424
+ ),
425
+ lambda value: value["artifacts"][0].update({"declared_size_bytes": True}),
426
+ ],
427
+ )
428
+ def test_inventory_closed_shape_and_semantic_duplicates_fail(
429
+ mutate: Callable[[dict[str, Any]], None]
430
+ ) -> None:
431
+ inventory = _inventory()
432
+ mutate(inventory)
433
+ with pytest.raises(ContractError):
434
+ validate_submission_packet_inventory(inventory)
435
+
436
+
437
+ @pytest.mark.parametrize(
438
+ "relative_path",
439
+ [
440
+ "/absolute.txt",
441
+ "../escape.txt",
442
+ "a/../escape.txt",
443
+ "a/./file.txt",
444
+ "a//file.txt",
445
+ "a\\file.txt",
446
+ "C:/drive.txt",
447
+ ".",
448
+ "folder/",
449
+ "\u202efile.txt",
450
+ ],
451
+ )
452
+ def test_inventory_paths_must_be_normalized_relative_posix(
453
+ relative_path: str,
454
+ ) -> None:
455
+ inventory = _inventory()
456
+ inventory["artifacts"][0]["relative_path"] = relative_path
457
+ with pytest.raises(ContractError):
458
+ validate_submission_packet_inventory(inventory)
459
+
460
+
461
+ @pytest.mark.parametrize(
462
+ "mutate",
463
+ [
464
+ lambda value: value.__setitem__("inventory_id", "valid.id\n"),
465
+ lambda value: value["artifacts"][0]["declared_structure"].__setitem__(
466
+ "version_id", "v1\n"
467
+ ),
468
+ lambda value: value["artifacts"][0].__setitem__(
469
+ "declared_sha256", "0" * 64 + "\n"
470
+ ),
471
+ lambda value: value["artifacts"][0].__setitem__(
472
+ "relative_path", "consent-materials.txt\n"
473
+ ),
474
+ lambda value: value["artifacts"][0].__setitem__(
475
+ "media_type", "text/plain\n"
476
+ ),
477
+ lambda value: value["artifacts"][0]["declared_structure"].__setitem__(
478
+ "document_date", "2026-W01-1"
479
+ ),
480
+ ],
481
+ )
482
+ def test_inventory_schema_runtime_absolute_end_parity(
483
+ mutate: Callable[[dict[str, Any]], None]
484
+ ) -> None:
485
+ inventory = _inventory()
486
+ mutate(inventory)
487
+ assert list(_validator(INVENTORY_SCHEMA).iter_errors(inventory))
488
+ with pytest.raises(ContractError):
489
+ validate_submission_packet_inventory(inventory)
490
+
491
+
492
+ def test_lone_surrogate_path_fails_schema_public_validation_and_context_free_build() -> None:
493
+ inventory = _inventory()
494
+ inventory["artifacts"][0]["relative_path"] = "surrogate-\ud800.txt"
495
+ assert list(_validator(INVENTORY_SCHEMA).iter_errors(inventory))
496
+ with pytest.raises(ContractError, match="surrogate"):
497
+ validate_submission_packet_inventory(inventory)
498
+ with pytest.raises(ContractError, match="surrogate"):
499
+ build_submission_packet_manifest(inventory, PACKET_ROOT)
500
+ manifest = _build()
501
+ manifest["packet_observations"][0]["relative_path"] = "surrogate-\ud800.txt"
502
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
503
+ with pytest.raises(ContractError, match="canonical JSON"):
504
+ render_submission_packet_manifest(manifest)
505
+
506
+
507
+ def test_reserved_format_control_fails_schema_and_runtime_on_both_contracts() -> None:
508
+ reserved_format_control = "\U00013439"
509
+ inventory = _inventory()
510
+ inventory["artifacts"][0]["relative_path"] = (
511
+ f"reserved-{reserved_format_control}.txt"
512
+ )
513
+ assert list(_validator(INVENTORY_SCHEMA).iter_errors(inventory))
514
+ with pytest.raises(ContractError, match="format"):
515
+ validate_submission_packet_inventory(inventory)
516
+ with pytest.raises(ContractError, match="format"):
517
+ build_submission_packet_manifest(inventory, PACKET_ROOT)
518
+
519
+ manifest = _build()
520
+ manifest["packet_observations"][0]["relative_path"] = (
521
+ f"reserved-{reserved_format_control}.txt"
522
+ )
523
+ _repin_manifest(manifest)
524
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
525
+ with pytest.raises(ContractError, match="format"):
526
+ render_submission_packet_manifest(manifest)
527
+
528
+
529
+ def test_missing_explicit_attachment_is_observed_not_located(tmp_path: Path) -> None:
530
+ packet = _packet_copy(tmp_path)
531
+ (packet / "consent-materials.txt").unlink()
532
+ rows = observe_submission_packet(_inventory(), packet)
533
+ row = next(item for item in rows if item["artifact_id"] == "fixture.us-consent")
534
+ assert row == {
535
+ "artifact_id": "fixture.us-consent",
536
+ "relative_path": "consent-materials.txt",
537
+ "state": "not_located",
538
+ "observed_sha256": None,
539
+ "observed_size_bytes": None,
540
+ "status": "CONFLICTING",
541
+ "reason_codes": ["DECLARED_ATTACHMENT_NOT_LOCATED"],
542
+ }
543
+
544
+
545
+ @pytest.mark.parametrize(
546
+ ("mutation", "expected_reasons"),
547
+ [
548
+ ("missing", ["DECLARED_ATTACHMENT_NOT_LOCATED"]),
549
+ ("digest", ["ARTIFACT_DIGEST_MISMATCH"]),
550
+ ("certificate_holder", ["CERTIFICATE_HOLDER_MISMATCH"]),
551
+ ],
552
+ )
553
+ def test_unbound_declared_conflict_stays_visible_without_changing_readiness(
554
+ tmp_path: Path, mutation: str, expected_reasons: list[str]
555
+ ) -> None:
556
+ packet = _packet_copy(tmp_path)
557
+ inventory = _inventory()
558
+ artifact = _artifact(inventory, "fixture.training-certificate")
559
+ path = packet / artifact["relative_path"]
560
+ if mutation == "missing":
561
+ path.unlink()
562
+ elif mutation == "digest":
563
+ original = path.read_bytes()
564
+ replacement = bytes([original[0] ^ 1]) + original[1:]
565
+ assert len(replacement) == len(original)
566
+ path.write_bytes(replacement)
567
+ else:
568
+ certificate = artifact["declared_structure"]["certificate"]
569
+ assert certificate is not None
570
+ certificate["holder_role_id"] = "principal_investigator"
571
+ manifest = _build(inventory, packet)
572
+ observation = next(
573
+ row
574
+ for row in manifest["packet_observations"]
575
+ if row["artifact_id"] == artifact["artifact_id"]
576
+ )
577
+ assert observation["status"] == "CONFLICTING"
578
+ assert observation["reason_codes"] == expected_reasons
579
+ assert not any(
580
+ artifact["artifact_id"] in row["matched_artifact_ids"]
581
+ for row in manifest["entries"]
582
+ )
583
+ assert manifest["administrative_status"]["submission_readiness"] == (
584
+ "no_listed_gaps_located"
585
+ )
586
+
587
+
588
+ def test_packet_root_symlink_is_rejected(tmp_path: Path) -> None:
589
+ packet = _packet_copy(tmp_path)
590
+ redirected = tmp_path / "redirected"
591
+ packet.rename(redirected)
592
+ packet.symlink_to(redirected, target_is_directory=True)
593
+ with pytest.raises(ContractError, match="symlink"):
594
+ observe_submission_packet(_inventory(), packet)
595
+
596
+
597
+ def test_packet_root_with_symlinked_ancestor_is_rejected(tmp_path: Path) -> None:
598
+ real_parent = tmp_path / "real-parent"
599
+ real_parent.mkdir()
600
+ _packet_copy(real_parent)
601
+ linked_parent = tmp_path / "linked-parent"
602
+ linked_parent.symlink_to(real_parent, target_is_directory=True)
603
+ with pytest.raises(ContractError, match="symlink"):
604
+ observe_submission_packet(_inventory(), linked_parent / "packet")
605
+
606
+
607
+ @pytest.mark.parametrize("link_parent", [False, True])
608
+ def test_packet_member_or_parent_symlink_is_rejected(
609
+ tmp_path: Path, link_parent: bool
610
+ ) -> None:
611
+ inventory = _inventory()
612
+ packet = _packet_copy(tmp_path)
613
+ if link_parent:
614
+ real = tmp_path / "real-subdir"
615
+ real.mkdir()
616
+ shutil.copy2(packet / "consent-materials.txt", real / "consent-materials.txt")
617
+ (packet / "linked").symlink_to(real, target_is_directory=True)
618
+ _artifact(inventory, "fixture.us-consent")["relative_path"] = (
619
+ "linked/consent-materials.txt"
620
+ )
621
+ else:
622
+ original = packet / "consent-materials.txt"
623
+ real = packet / "consent-real.txt"
624
+ original.rename(real)
625
+ original.symlink_to(real.name)
626
+ with pytest.raises(ContractError, match="symlink"):
627
+ observe_submission_packet(inventory, packet)
628
+
629
+
630
+ def test_broken_symlink_is_rejected_not_folded_into_absence(tmp_path: Path) -> None:
631
+ packet = _packet_copy(tmp_path)
632
+ path = packet / "consent-materials.txt"
633
+ path.unlink()
634
+ path.symlink_to("missing-target.txt")
635
+ with pytest.raises(ContractError, match="symlink"):
636
+ observe_submission_packet(_inventory(), packet)
637
+
638
+
639
+ def test_final_member_swap_to_symlink_cannot_escape_anchored_root(
640
+ tmp_path: Path, monkeypatch: pytest.MonkeyPatch
641
+ ) -> None:
642
+ inventory = _inventory()
643
+ packet = _packet_copy(tmp_path)
644
+ artifact = _artifact(inventory, "fixture.us-consent")
645
+ target = packet / artifact["relative_path"]
646
+ outside = tmp_path / "outside-secret.txt"
647
+ outside.write_bytes(b"OUTSIDE-SYMLINK-TARGET-667\n")
648
+ original_open = os.open
649
+ swapped = False
650
+
651
+ def racing_open(
652
+ path: str | bytes | os.PathLike[str] | os.PathLike[bytes],
653
+ flags: int,
654
+ mode: int = 0o777,
655
+ *,
656
+ dir_fd: int | None = None,
657
+ ) -> int:
658
+ nonlocal swapped
659
+ if (
660
+ not swapped
661
+ and dir_fd is not None
662
+ and not flags & os.O_DIRECTORY
663
+ and os.fsdecode(path) == target.name
664
+ ):
665
+ swapped = True
666
+ target.unlink()
667
+ target.symlink_to(outside)
668
+ return original_open(path, flags, mode, dir_fd=dir_fd)
669
+
670
+ monkeypatch.setattr(os, "open", racing_open)
671
+ with pytest.raises(ContractError, match="symlink"):
672
+ observe_submission_packet(inventory, packet)
673
+ assert swapped is True
674
+ assert target.is_symlink()
675
+
676
+
677
+ def test_member_parent_swap_after_open_stays_on_anchored_directory(
678
+ tmp_path: Path, monkeypatch: pytest.MonkeyPatch
679
+ ) -> None:
680
+ inventory = _inventory()
681
+ packet = _packet_copy(tmp_path)
682
+ artifact = _artifact(inventory, "fixture.us-consent")
683
+ original_path = packet / artifact["relative_path"]
684
+ expected = original_path.read_bytes()
685
+ member_parent = packet / "nested"
686
+ member_parent.mkdir()
687
+ original_path.rename(member_parent / original_path.name)
688
+ artifact["relative_path"] = f"nested/{original_path.name}"
689
+
690
+ outside_parent = tmp_path / "outside-parent"
691
+ outside_parent.mkdir()
692
+ (outside_parent / original_path.name).write_bytes(b"OUTSIDE-PARENT-TARGET-667\n")
693
+ moved_parent = packet / "opened-parent"
694
+ original_open_directory = packet_runtime._open_directory_at
695
+ swapped = False
696
+
697
+ def swap_after_open(
698
+ parent_fd: int,
699
+ component: str,
700
+ contract_path: str,
701
+ *,
702
+ missing_ok: bool,
703
+ ) -> int | None:
704
+ nonlocal swapped
705
+ opened = original_open_directory(
706
+ parent_fd,
707
+ component,
708
+ contract_path,
709
+ missing_ok=missing_ok,
710
+ )
711
+ if component == "nested" and opened is not None and not swapped:
712
+ swapped = True
713
+ member_parent.rename(moved_parent)
714
+ member_parent.symlink_to(outside_parent, target_is_directory=True)
715
+ return opened
716
+
717
+ monkeypatch.setattr(packet_runtime, "_open_directory_at", swap_after_open)
718
+ observations = observe_submission_packet(inventory, packet)
719
+ row = next(
720
+ item for item in observations if item["artifact_id"] == artifact["artifact_id"]
721
+ )
722
+ assert swapped is True
723
+ assert member_parent.is_symlink()
724
+ assert row["observed_sha256"] == hashlib.sha256(expected).hexdigest()
725
+ assert row["observed_sha256"] != hashlib.sha256(
726
+ (outside_parent / original_path.name).read_bytes()
727
+ ).hexdigest()
728
+
729
+
730
+ def test_descriptor_safe_open_has_no_unsafe_platform_fallback(
731
+ monkeypatch: pytest.MonkeyPatch,
732
+ ) -> None:
733
+ monkeypatch.delattr(packet_runtime.os, "O_NOFOLLOW")
734
+ with pytest.raises(ContractError, match="descriptor-relative O_NOFOLLOW"):
735
+ observe_submission_packet(_inventory(), PACKET_ROOT)
736
+
737
+
738
+ @pytest.mark.parametrize("kind", ["directory", "fifo"])
739
+ def test_non_regular_explicit_attachment_is_rejected(tmp_path: Path, kind: str) -> None:
740
+ packet = _packet_copy(tmp_path)
741
+ path = packet / "consent-materials.txt"
742
+ path.unlink()
743
+ if kind == "directory":
744
+ path.mkdir()
745
+ else:
746
+ if not hasattr(os, "mkfifo"):
747
+ pytest.skip("FIFO creation is unavailable")
748
+ os.mkfifo(path)
749
+ with pytest.raises(ContractError, match="regular file"):
750
+ observe_submission_packet(_inventory(), packet)
751
+
752
+
753
+ def test_observer_opens_only_inventory_paths_and_ignores_sibling_sentinel(
754
+ tmp_path: Path, monkeypatch: pytest.MonkeyPatch
755
+ ) -> None:
756
+ packet = _packet_copy(tmp_path)
757
+ sentinel = packet / "consent-final-approved-secret.txt"
758
+ sentinel.write_text("UNLISTED-SENTINEL-667", encoding="utf-8")
759
+ inventory = _inventory()
760
+ opened: list[str] = []
761
+ original_open = os.open
762
+
763
+ def tracked_open(
764
+ path: str | bytes | os.PathLike[str] | os.PathLike[bytes],
765
+ flags: int,
766
+ mode: int = 0o777,
767
+ *,
768
+ dir_fd: int | None = None,
769
+ ) -> int:
770
+ if dir_fd is not None and not flags & os.O_DIRECTORY:
771
+ opened.append(os.fsdecode(path))
772
+ return original_open(path, flags, mode, dir_fd=dir_fd)
773
+
774
+ monkeypatch.setattr(os, "open", tracked_open)
775
+ rows = observe_submission_packet(inventory, packet)
776
+ expected = {row["relative_path"] for row in inventory["artifacts"]}
777
+ assert set(opened) == expected
778
+ assert sentinel.name not in opened
779
+ assert "UNLISTED-SENTINEL-667" not in json.dumps(rows)
780
+
781
+
782
+ def test_observer_limits_are_enforced_without_large_fixture(
783
+ monkeypatch: pytest.MonkeyPatch,
784
+ ) -> None:
785
+ inventory = _inventory()
786
+ for artifact in inventory["artifacts"]:
787
+ artifact["declared_size_bytes"] = 0
788
+ monkeypatch.setattr(packet_runtime, "MAX_ARTIFACT_BYTES", 32)
789
+ with pytest.raises(ContractError, match="observation limit"):
790
+ observe_submission_packet(inventory, PACKET_ROOT)
791
+
792
+
793
+ def test_total_observer_limit_is_enforced_without_large_fixture(
794
+ monkeypatch: pytest.MonkeyPatch,
795
+ ) -> None:
796
+ inventory = _inventory()
797
+ declared_total = sum(
798
+ artifact["declared_size_bytes"] for artifact in inventory["artifacts"]
799
+ )
800
+ monkeypatch.setattr(packet_runtime, "MAX_TOTAL_BYTES", declared_total - 1)
801
+ with pytest.raises(ContractError, match="total limit"):
802
+ observe_submission_packet(inventory, PACKET_ROOT)
803
+
804
+
805
+ def test_runtime_has_no_directory_scan_network_or_model_client() -> None:
806
+ tree = ast.parse(RUNTIME.read_text(encoding="utf-8"))
807
+ imported: set[str] = set()
808
+ forbidden_calls = {
809
+ "glob",
810
+ "iglob",
811
+ "rglob",
812
+ "iterdir",
813
+ "listdir",
814
+ "scandir",
815
+ "walk",
816
+ "fwalk",
817
+ }
818
+ calls: set[str] = set()
819
+ for node in ast.walk(tree):
820
+ if isinstance(node, ast.Import):
821
+ imported.update(alias.name.split(".")[0] for alias in node.names)
822
+ elif isinstance(node, ast.ImportFrom) and node.module:
823
+ imported.add(node.module.split(".")[0])
824
+ elif isinstance(node, ast.Call) and isinstance(node.func, ast.Attribute):
825
+ calls.add(node.func.attr)
826
+ assert imported.isdisjoint(
827
+ {
828
+ "socket",
829
+ "urllib",
830
+ "http",
831
+ "requests",
832
+ "httpx",
833
+ "openai",
834
+ "anthropic",
835
+ "subprocess",
836
+ }
837
+ )
838
+ assert calls.isdisjoint(forbidden_calls)
839
+
840
+
841
+ def test_in_process_builder_never_opens_a_socket(
842
+ monkeypatch: pytest.MonkeyPatch,
843
+ ) -> None:
844
+ def fail_connect(*args: Any, **kwargs: Any) -> None:
845
+ raise AssertionError("packet manifest attempted network access")
846
+
847
+ monkeypatch.setattr(socket.socket, "connect", fail_connect)
848
+ _build()
849
+
850
+
851
+ def test_no_authority_triplet_returns_explicit_unresolved_manifest() -> None:
852
+ manifest = build_submission_packet_manifest(_inventory(), PACKET_ROOT)
853
+ assert manifest["authority_binding"]["state"] == "not_provided"
854
+ assert manifest["entries"] == []
855
+ assert manifest["excluded_requirements"] == []
856
+ assert manifest["administrative_status"]["submission_readiness"] == "unresolved"
857
+ assert "AUTHORITY_INPUT_NOT_PROVIDED" in _reason_codes(manifest)
858
+ assert "V1_ENVELOPE_FACT_MISSING" in _reason_codes(manifest)
859
+
860
+
861
+ @pytest.mark.parametrize("provided", [(True, False, False), (False, True, False), (False, False, True), (True, True, False), (True, False, True), (False, True, True)])
862
+ def test_partial_authority_triplet_fails_closed(
863
+ provided: tuple[bool, bool, bool]
864
+ ) -> None:
865
+ context, registry, resolved = _authority()
866
+ values = (context, registry, resolved)
867
+ args = [value if use else None for value, use in zip(values, provided)]
868
+ with pytest.raises(ContractError, match="all-or-none"):
869
+ build_submission_packet_manifest(
870
+ _inventory(),
871
+ PACKET_ROOT,
872
+ context=args[0],
873
+ registry=args[1],
874
+ resolved=args[2],
875
+ )
876
+
877
+
878
+ def test_schema_shaped_resolved_tamper_is_rejected_with_or_without_resigning() -> None:
879
+ context, registry, resolved = _authority()
880
+ for resign in (False, True):
881
+ tampered = copy.deepcopy(resolved)
882
+ tampered["requirement_results"][0]["consumer_scopes"].append(
883
+ "submission_packet"
884
+ )
885
+ if resign:
886
+ tampered.pop("resolved_digest")
887
+ tampered["resolved_digest"] = digest(tampered)
888
+ with pytest.raises(ContractError):
889
+ _build(_inventory(), PACKET_ROOT, context, registry, tampered)
890
+
891
+
892
+ def test_upstream_week_date_residue_cannot_escape_the_667_date_contract() -> None:
893
+ context = _context()
894
+ registry = _registry()
895
+ registry["as_of"] = "2026-W52-7"
896
+ resolved = resolve(context, registry)
897
+ with pytest.raises(ContractError, match="real ISO 8601 date"):
898
+ _build(_inventory(), PACKET_ROOT, context, registry, resolved)
899
+
900
+
901
+ def test_replayed_closed_authority_gate_stays_unresolved_without_default_profile() -> None:
902
+ context = _context("no-profile.json")
903
+ registry = _registry()
904
+ resolved = resolve(context, registry)
905
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
906
+ assert manifest["authority_binding"]["state"] == "replay_validated"
907
+ assert manifest["authority_binding"]["resolution_state"] == "jurisdiction_unresolved"
908
+ assert manifest["entries"] == []
909
+ assert manifest["administrative_status"]["submission_readiness"] == "unresolved"
910
+ assert "AUTHORITY_RESOLUTION_NOT_PERMITTED" in _reason_codes(manifest)
911
+
912
+
913
+ @pytest.mark.parametrize("fact_id", tuple(ENVELOPE_EXPECTED))
914
+ @pytest.mark.parametrize("case", ["missing", "unknown", "outside"])
915
+ def test_each_v1_envelope_fact_is_load_bearing(
916
+ fact_id: str, case: str
917
+ ) -> None:
918
+ context = _context()
919
+ rows = context["declared_facts"]
920
+ row = next(item for item in rows if item["fact_id"] == fact_id)
921
+ if case == "missing":
922
+ rows.remove(row)
923
+ expected_code = "V1_ENVELOPE_FACT_MISSING"
924
+ elif case == "unknown":
925
+ row["state"] = "unknown"
926
+ row["value"] = None
927
+ expected_code = "V1_ENVELOPE_FACT_UNKNOWN"
928
+ else:
929
+ row["value"] = not ENVELOPE_EXPECTED[fact_id]
930
+ expected_code = "V1_ENVELOPE_OUTSIDE"
931
+ registry = _registry()
932
+ resolved = resolve(context, registry)
933
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
934
+ assert manifest["capability_envelope"]["state"] == "unresolved"
935
+ assert manifest["entries"] == []
936
+ assert manifest["administrative_status"]["submission_readiness"] == "unresolved"
937
+ assert any(
938
+ reason["code"] == expected_code and reason["fact_id"] == fact_id
939
+ for reason in manifest["unresolved_reasons"]
940
+ )
941
+
942
+
943
+ def test_all_seven_v1_envelope_facts_pass_together() -> None:
944
+ manifest = _build()
945
+ assert manifest["capability_envelope"]["state"] == "within_v1"
946
+ assert manifest["capability_envelope"]["reason_codes"] == []
947
+ assert {
948
+ row["fact_id"]: (row["required_value"], row["declared_value"])
949
+ for row in manifest["capability_envelope"]["facts"]
950
+ } == {key: (value, value) for key, value in ENVELOPE_EXPECTED.items()}
951
+
952
+
953
+ @pytest.mark.parametrize("overlay_kind", ["institutional", "funder"])
954
+ def test_not_provided_overlay_remains_visible_and_readiness_unresolved(
955
+ overlay_kind: str,
956
+ ) -> None:
957
+ context = _context()
958
+ context["overlay_selection_state"][overlay_kind] = "not_provided"
959
+ registry = _registry()
960
+ resolved = resolve(context, registry)
961
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
962
+ assert manifest["overlay_selection_state"][overlay_kind] == "not_provided"
963
+ assert manifest["administrative_status"]["submission_readiness"] == "unresolved"
964
+ assert any(
965
+ reason["code"] == "OVERLAY_SELECTION_NOT_PROVIDED"
966
+ and reason["overlay_kind"] == overlay_kind
967
+ for reason in manifest["unresolved_reasons"]
968
+ )
969
+
970
+
971
+ def test_us_packet_rows_respect_actor_scope_and_evidence_holder_boundaries() -> None:
972
+ manifest = _build()
973
+ participant = _entry(
974
+ manifest,
975
+ "us.45cfr46.116.informed-consent",
976
+ "consent.participant-materials",
977
+ )
978
+ determination = _entry(
979
+ manifest,
980
+ "us.45cfr46.116.informed-consent",
981
+ "consent.irb-determination",
982
+ )
983
+ assert participant["responsibility"] == "packet_owned"
984
+ assert participant["status"] == "DOCUMENTED"
985
+ assert participant["reason_codes"] == ["STRUCTURE_DOCUMENTED"]
986
+ assert participant["matched_artifact_ids"] == ["fixture.us-consent"]
987
+ assert determination["responsibility"] == "external_dependency"
988
+ assert determination["status"] == "ACCEPTANCE_UNVERIFIED"
989
+ assert determination["readiness_effect"] == "none"
990
+ assert determination["matched_artifact_ids"] == []
991
+ requirement_ids = {
992
+ row["requirement_ref"]["requirement_id"] for row in manifest["entries"]
993
+ }
994
+ assert "us.45cfr46.107.irb-composition" not in requirement_ids
995
+ assert not any(item.startswith("eu.gdpr") for item in requirement_ids)
996
+ assert manifest["administrative_status"]["submission_readiness"] == (
997
+ "no_listed_gaps_located"
998
+ )
999
+
1000
+
1001
+ def test_exact_obligated_actor_match_is_required_before_packet_ownership() -> None:
1002
+ inventory = _inventory()
1003
+ inventory["packet_responsibility_role_ids"].remove("investigator_and_irb")
1004
+ manifest = _build(inventory)
1005
+ participant = _entry(
1006
+ manifest,
1007
+ "us.45cfr46.116.informed-consent",
1008
+ "consent.participant-materials",
1009
+ )
1010
+ assert participant["responsibility"] == "external_dependency"
1011
+ assert participant["status"] == "ACCEPTANCE_UNVERIFIED"
1012
+ assert participant["readiness_effect"] == "none"
1013
+
1014
+
1015
+ def test_same_packet_inventory_produces_distinct_exact_us_and_tw_manifests() -> None:
1016
+ inventory = _inventory()
1017
+ us_context, registry, us_resolved = _authority("us-gdpr-two-axis.json")
1018
+ tw_context = _context("tw-gdpr-two-axis.json")
1019
+ tw_resolved = resolve(tw_context, registry)
1020
+ us = _build(inventory, PACKET_ROOT, us_context, registry, us_resolved)
1021
+ tw = _build(inventory, PACKET_ROOT, tw_context, registry, tw_resolved)
1022
+ us_row = _entry(
1023
+ us,
1024
+ "us.45cfr46.116.informed-consent",
1025
+ "consent.participant-materials",
1026
+ )
1027
+ tw_row = _entry(
1028
+ tw,
1029
+ "tw.hsra.article-14.consent-information",
1030
+ "consent.article-14-materials",
1031
+ )
1032
+ assert us_row["status"] == tw_row["status"] == "DOCUMENTED"
1033
+ assert us_row["matched_artifact_ids"] == ["fixture.us-consent"]
1034
+ assert tw_row["matched_artifact_ids"] == ["fixture.tw-consent"]
1035
+ assert us["manifest_digest"] != tw["manifest_digest"]
1036
+ assert not any(
1037
+ row["requirement_ref"]["requirement_id"].startswith("tw.")
1038
+ for row in us["entries"]
1039
+ )
1040
+ assert not any(
1041
+ row["requirement_ref"]["requirement_id"].startswith("us.")
1042
+ for row in tw["entries"]
1043
+ )
1044
+
1045
+
1046
+ def test_same_packet_conditional_fact_true_false_unknown_is_not_inferred() -> None:
1047
+ context, registry, _resolved, overlay = _synthetic_overlay_authority()
1048
+ base = next(
1049
+ row
1050
+ for row in overlay["requirements"]
1051
+ if row["requirement_id"] == "synthetic.packet.base-consent"
1052
+ )
1053
+ base["applies_if"] = {
1054
+ "op": "fact_equals",
1055
+ "fact_id": "data.special_category",
1056
+ "value": True,
1057
+ }
1058
+ _repin_overlay(context, overlay)
1059
+ special = next(
1060
+ row
1061
+ for row in context["declared_facts"]
1062
+ if row["fact_id"] == "data.special_category"
1063
+ )
1064
+
1065
+ special["state"], special["value"] = "declared", False
1066
+ false_manifest = _build(
1067
+ _inventory(), PACKET_ROOT, context, registry, resolve(context, registry)
1068
+ )
1069
+ assert any(
1070
+ row["requirement_ref"]["requirement_id"]
1071
+ == "synthetic.packet.base-consent"
1072
+ for row in false_manifest["excluded_requirements"]
1073
+ )
1074
+
1075
+ special["value"] = True
1076
+ true_manifest = _build(
1077
+ _inventory(), PACKET_ROOT, context, registry, resolve(context, registry)
1078
+ )
1079
+ assert _entry(
1080
+ true_manifest,
1081
+ "synthetic.packet.base-consent",
1082
+ "synthetic.base-consent",
1083
+ )["status"] == "NOT_LOCATED"
1084
+
1085
+ special["state"], special["value"] = "unknown", None
1086
+ unknown_manifest = _build(
1087
+ _inventory(), PACKET_ROOT, context, registry, resolve(context, registry)
1088
+ )
1089
+ assert unknown_manifest["entries"] == []
1090
+ assert unknown_manifest["excluded_requirements"] == []
1091
+ assert "AUTHORITY_RESOLUTION_NOT_PERMITTED" in _reason_codes(unknown_manifest)
1092
+ assert len(
1093
+ {
1094
+ false_manifest["manifest_digest"],
1095
+ true_manifest["manifest_digest"],
1096
+ unknown_manifest["manifest_digest"],
1097
+ }
1098
+ ) == 3
1099
+
1100
+
1101
+ def test_parallel_collision_entries_survive_display_precedence_changes() -> None:
1102
+ context, registry, _resolved, overlay = _synthetic_overlay_authority()
1103
+ base = next(
1104
+ row
1105
+ for row in overlay["requirements"]
1106
+ if row["requirement_id"] == "synthetic.packet.base-consent"
1107
+ )
1108
+ base["interaction"]["collision_key"] = "participant.information"
1109
+ _repin_overlay(context, overlay)
1110
+ first_resolved = resolve(context, registry)
1111
+ collision = next(
1112
+ row
1113
+ for row in first_resolved["collisions"]
1114
+ if row["collision_key"] == "participant.information"
1115
+ )
1116
+ assert {
1117
+ "us.45cfr46.116.informed-consent",
1118
+ "synthetic.packet.base-consent",
1119
+ } <= set(collision["requirement_ids"])
1120
+ first = _build(_inventory(), PACKET_ROOT, context, registry, first_resolved)
1121
+ live = _entry(
1122
+ first,
1123
+ "us.45cfr46.116.informed-consent",
1124
+ "consent.participant-materials",
1125
+ )
1126
+ parallel = _entry(
1127
+ first,
1128
+ "synthetic.packet.base-consent",
1129
+ "synthetic.base-consent",
1130
+ )
1131
+ assert live["requirement_ref"]["authority_kind"] == "profile"
1132
+ assert live["requirement_ref"]["requirement_pointer"].startswith("/profiles/")
1133
+ assert parallel["requirement_ref"]["authority_kind"] == "institutional_overlay"
1134
+ assert parallel["requirement_ref"]["requirement_pointer"].startswith("/overlays/")
1135
+ assert live["requirement_ref"]["authority_digest"] != parallel[
1136
+ "requirement_ref"
1137
+ ]["authority_digest"]
1138
+
1139
+ review = next(
1140
+ row
1141
+ for row in context["display_precedence"]
1142
+ if row["axis"] == "review_ethics"
1143
+ )
1144
+ review["ordered_authorities"].reverse()
1145
+ second_resolved = resolve(context, registry)
1146
+ assert second_resolved["trace_order"] != first_resolved["trace_order"]
1147
+ second = _build(_inventory(), PACKET_ROOT, context, registry, second_resolved)
1148
+ assert second["entries"] == first["entries"]
1149
+ assert second["excluded_requirements"] == first["excluded_requirements"]
1150
+ assert second["authority_binding"] != first["authority_binding"]
1151
+
1152
+
1153
+ def _bounded_requirement_result(requirement_id: str, applicability: str) -> dict[str, Any]:
1154
+ return {
1155
+ "requirement_id": requirement_id,
1156
+ "authority_kind": "profile",
1157
+ "authority_id": "synthetic.profile",
1158
+ "authority_version": "1.0",
1159
+ "authority_digest": "0" * 64,
1160
+ "axis": "review_ethics",
1161
+ "obligated_actor": "investigator",
1162
+ "consumer_scopes": ["submission_packet"],
1163
+ "applicability": applicability,
1164
+ "predicate_trace": [],
1165
+ "requirement_digest": "0" * 64,
1166
+ "requirement_pointer": "/profiles/0/requirements/0",
1167
+ "authority_anchor_pointer": "/profiles/0/requirements/0/authority_anchor",
1168
+ }
1169
+
1170
+
1171
+ def test_manifest_entry_bound_accepts_4096_and_rejects_4097(
1172
+ monkeypatch: pytest.MonkeyPatch,
1173
+ ) -> None:
1174
+ evidence_rows = [
1175
+ {
1176
+ "evidence_id": f"synthetic.evidence.{index:04d}",
1177
+ "held_by": "external_holder",
1178
+ "artifact_type": "synthetic_artifact",
1179
+ "description": "Digest-only synthetic row.",
1180
+ }
1181
+ for index in range(packet_runtime.MAX_MANIFEST_ENTRIES)
1182
+ ]
1183
+
1184
+ def fake_requirement(
1185
+ _result: dict[str, Any], _registry: dict[str, Any]
1186
+ ) -> tuple[dict[str, Any], list[dict[str, Any]]]:
1187
+ return {"waiver_or_exception_route": None}, evidence_rows
1188
+
1189
+ monkeypatch.setattr(packet_runtime, "_resolved_requirement", fake_requirement)
1190
+ inventory = {
1191
+ "packet_responsibility_role_ids": ["investigator"],
1192
+ "waiver_or_exception_claims": [],
1193
+ "artifacts": [],
1194
+ }
1195
+ resolved = {
1196
+ "requirement_results": [
1197
+ _bounded_requirement_result("synthetic.requirement", "true")
1198
+ ]
1199
+ }
1200
+ entries, excluded = packet_runtime._evidence_entries(
1201
+ inventory, {}, {}, resolved, []
1202
+ )
1203
+ assert len(entries) == packet_runtime.MAX_MANIFEST_ENTRIES
1204
+ assert excluded == []
1205
+
1206
+ evidence_rows.append(
1207
+ {
1208
+ "evidence_id": "synthetic.evidence.overflow",
1209
+ "held_by": "external_holder",
1210
+ "artifact_type": "synthetic_artifact",
1211
+ "description": "Overflow row.",
1212
+ }
1213
+ )
1214
+ with pytest.raises(ContractError, match="4096 submission-packet evidence entries"):
1215
+ packet_runtime._evidence_entries(inventory, {}, {}, resolved, [])
1216
+
1217
+
1218
+ def test_manifest_canonical_byte_bound_is_inclusive(
1219
+ monkeypatch: pytest.MonkeyPatch,
1220
+ ) -> None:
1221
+ assert packet_runtime.MAX_MANIFEST_BYTES == 8 * 1024 * 1024
1222
+ inventory = _inventory()
1223
+ context, registry, resolved = _authority()
1224
+ baseline = _build(inventory, PACKET_ROOT, context, registry, resolved)
1225
+ exact_size = len(packet_runtime._canonical_bytes(baseline))
1226
+
1227
+ monkeypatch.setattr(packet_runtime, "MAX_MANIFEST_BYTES", exact_size)
1228
+ assert _build(inventory, PACKET_ROOT, context, registry, resolved) == baseline
1229
+ validate_submission_packet_manifest(
1230
+ baseline,
1231
+ inventory,
1232
+ PACKET_ROOT,
1233
+ context=context,
1234
+ registry=registry,
1235
+ resolved=resolved,
1236
+ )
1237
+ assert render_submission_packet_manifest(baseline).startswith(
1238
+ "# Human-Subjects Submission-Packet Manifest"
1239
+ )
1240
+
1241
+ monkeypatch.setattr(packet_runtime, "MAX_MANIFEST_BYTES", exact_size - 1)
1242
+ with pytest.raises(ContractError, match="canonical JSON exceeds"):
1243
+ _build(inventory, PACKET_ROOT, context, registry, resolved)
1244
+ with pytest.raises(ContractError, match="canonical JSON exceeds"):
1245
+ validate_submission_packet_manifest(
1246
+ baseline,
1247
+ inventory,
1248
+ PACKET_ROOT,
1249
+ context=context,
1250
+ registry=registry,
1251
+ resolved=resolved,
1252
+ )
1253
+ with pytest.raises(ContractError, match="canonical JSON exceeds"):
1254
+ render_submission_packet_manifest(baseline)
1255
+
1256
+
1257
+ def test_consumer_scope_bound_accepts_512_and_rejects_513(
1258
+ monkeypatch: pytest.MonkeyPatch,
1259
+ ) -> None:
1260
+ evidence_rows = [
1261
+ {
1262
+ "evidence_id": "synthetic.evidence",
1263
+ "held_by": "external_holder",
1264
+ "artifact_type": "synthetic_artifact",
1265
+ "description": "Bounded scope row.",
1266
+ }
1267
+ ]
1268
+ monkeypatch.setattr(
1269
+ packet_runtime,
1270
+ "_resolved_requirement",
1271
+ lambda _result, _registry: ({"waiver_or_exception_route": None}, evidence_rows),
1272
+ )
1273
+ inventory = {
1274
+ "packet_responsibility_role_ids": ["investigator"],
1275
+ "waiver_or_exception_claims": [],
1276
+ "artifacts": [],
1277
+ }
1278
+ result = _bounded_requirement_result("synthetic.requirement", "true")
1279
+ result["consumer_scopes"] = sorted(
1280
+ ["submission_packet"]
1281
+ + [
1282
+ f"synthetic.scope.{index:04d}"
1283
+ for index in range(packet_runtime.MAX_CONSUMER_SCOPES - 1)
1284
+ ]
1285
+ )
1286
+ entries, _excluded = packet_runtime._evidence_entries(
1287
+ inventory, {}, {}, {"requirement_results": [result]}, []
1288
+ )
1289
+ assert len(entries[0]["requirement_ref"]["consumer_scopes"]) == (
1290
+ packet_runtime.MAX_CONSUMER_SCOPES
1291
+ )
1292
+
1293
+ result["consumer_scopes"].append("synthetic.scope.overflow")
1294
+ with pytest.raises(ContractError, match="consumer scopes exceed 512"):
1295
+ packet_runtime._evidence_entries(
1296
+ inventory, {}, {}, {"requirement_results": [result]}, []
1297
+ )
1298
+
1299
+
1300
+ def test_evidence_expansion_indexes_inventory_bindings_once(
1301
+ monkeypatch: pytest.MonkeyPatch,
1302
+ ) -> None:
1303
+ class CountingBindings(list[dict[str, str]]):
1304
+ iterations = 0
1305
+
1306
+ def __iter__(self): # type: ignore[no-untyped-def]
1307
+ type(self).iterations += 1
1308
+ return super().__iter__()
1309
+
1310
+ bindings = CountingBindings(
1311
+ [
1312
+ {
1313
+ "requirement_id": "synthetic.requirement",
1314
+ "evidence_id": "synthetic.evidence.0000",
1315
+ }
1316
+ ]
1317
+ )
1318
+ artifact = {
1319
+ "artifact_id": "synthetic.artifact",
1320
+ "evidence_bindings": bindings,
1321
+ }
1322
+ inventory = {
1323
+ "packet_responsibility_role_ids": ["investigator"],
1324
+ "waiver_or_exception_claims": [],
1325
+ "artifacts": [artifact],
1326
+ }
1327
+ evidence_rows = [
1328
+ {
1329
+ "evidence_id": f"synthetic.evidence.{index:04d}",
1330
+ "held_by": "external_holder",
1331
+ "artifact_type": "synthetic_artifact",
1332
+ "description": "Indexed synthetic row.",
1333
+ }
1334
+ for index in range(128)
1335
+ ]
1336
+ monkeypatch.setattr(
1337
+ packet_runtime,
1338
+ "_resolved_requirement",
1339
+ lambda _result, _registry: ({"waiver_or_exception_route": None}, evidence_rows),
1340
+ )
1341
+ result = _bounded_requirement_result("synthetic.requirement", "true")
1342
+ entries, _excluded = packet_runtime._evidence_entries(
1343
+ inventory, {}, {}, {"requirement_results": [result]}, []
1344
+ )
1345
+ assert len(entries) == len(evidence_rows)
1346
+ assert CountingBindings.iterations == 1
1347
+
1348
+
1349
+ def test_profiled_route_result_is_cached_per_requirement(
1350
+ monkeypatch: pytest.MonkeyPatch,
1351
+ ) -> None:
1352
+ inventory = {
1353
+ "packet_responsibility_role_ids": ["investigator"],
1354
+ "waiver_or_exception_claims": [],
1355
+ "artifacts": [],
1356
+ }
1357
+ evidence_rows = [
1358
+ {
1359
+ "evidence_id": f"synthetic.evidence.{index:04d}",
1360
+ "held_by": "investigator",
1361
+ "artifact_type": "synthetic_artifact",
1362
+ "description": "Missing synthetic row.",
1363
+ }
1364
+ for index in range(128)
1365
+ ]
1366
+ monkeypatch.setattr(
1367
+ packet_runtime,
1368
+ "_resolved_requirement",
1369
+ lambda _result, _registry: (
1370
+ {
1371
+ "waiver_or_exception_route": {
1372
+ "state": "profiled",
1373
+ "requirement_ids": ["synthetic.route"],
1374
+ }
1375
+ },
1376
+ evidence_rows,
1377
+ ),
1378
+ )
1379
+ calls = 0
1380
+
1381
+ def counted_route(*_args: Any, **_kwargs: Any) -> bool:
1382
+ nonlocal calls
1383
+ calls += 1
1384
+ return False
1385
+
1386
+ monkeypatch.setattr(
1387
+ packet_runtime, "_located_profiled_route_claim", counted_route
1388
+ )
1389
+ result = _bounded_requirement_result("synthetic.requirement", "true")
1390
+ entries, _excluded = packet_runtime._evidence_entries(
1391
+ inventory, {}, {}, {"requirement_results": [result]}, []
1392
+ )
1393
+ assert len(entries) == len(evidence_rows)
1394
+ assert calls == 1
1395
+
1396
+
1397
+ def test_excluded_requirement_bound_accepts_4096_and_rejects_4097() -> None:
1398
+ inventory = {
1399
+ "packet_responsibility_role_ids": ["investigator"],
1400
+ "waiver_or_exception_claims": [],
1401
+ "artifacts": [],
1402
+ }
1403
+ results = [
1404
+ _bounded_requirement_result(f"synthetic.requirement.{index:04d}", "false")
1405
+ for index in range(packet_runtime.MAX_EXCLUDED_REQUIREMENTS)
1406
+ ]
1407
+ _entries, excluded = packet_runtime._evidence_entries(
1408
+ inventory, {}, {}, {"requirement_results": results}, []
1409
+ )
1410
+ assert len(excluded) == packet_runtime.MAX_EXCLUDED_REQUIREMENTS
1411
+
1412
+ results.append(
1413
+ _bounded_requirement_result("synthetic.requirement.overflow", "false")
1414
+ )
1415
+ with pytest.raises(
1416
+ ContractError, match="4096 excluded submission-packet requirements"
1417
+ ):
1418
+ packet_runtime._evidence_entries(
1419
+ inventory, {}, {}, {"requirement_results": results}, []
1420
+ )
1421
+
1422
+
1423
+ def test_absent_binding_is_not_located_but_external_evidence_is_not_a_false_gap() -> None:
1424
+ inventory = _inventory()
1425
+ _artifact(inventory, "fixture.us-consent")["evidence_bindings"] = []
1426
+ manifest = _build(inventory)
1427
+ participant = _entry(
1428
+ manifest,
1429
+ "us.45cfr46.116.informed-consent",
1430
+ "consent.participant-materials",
1431
+ )
1432
+ determination = _entry(
1433
+ manifest,
1434
+ "us.45cfr46.116.informed-consent",
1435
+ "consent.irb-determination",
1436
+ )
1437
+ assert participant["status"] == "NOT_LOCATED"
1438
+ assert participant["readiness_effect"] == "gap"
1439
+ assert participant["reason_codes"] == ["EXPECTED_PACKET_ARTIFACT_NOT_LOCATED"]
1440
+ assert determination["status"] == "ACCEPTANCE_UNVERIFIED"
1441
+ assert determination["readiness_effect"] == "none"
1442
+ assert manifest["administrative_status"]["submission_readiness"] == "gaps_located"
1443
+
1444
+
1445
+ def test_two_artifacts_claiming_one_evidence_binding_conflict(tmp_path: Path) -> None:
1446
+ packet = _packet_copy(tmp_path)
1447
+ inventory = _inventory()
1448
+ duplicate = copy.deepcopy(_artifact(inventory, "fixture.us-consent"))
1449
+ duplicate["artifact_id"] = "fixture.us-consent-copy"
1450
+ duplicate["relative_path"] = "us-consent-copy.txt"
1451
+ shutil.copy2(packet / "consent-materials.txt", packet / duplicate["relative_path"])
1452
+ inventory["artifacts"].append(duplicate)
1453
+ manifest = _build(inventory, packet)
1454
+ row = _entry(
1455
+ manifest,
1456
+ "us.45cfr46.116.informed-consent",
1457
+ "consent.participant-materials",
1458
+ )
1459
+ assert row["status"] == "CONFLICTING"
1460
+ assert row["readiness_effect"] == "gap"
1461
+ assert "DUPLICATE_EVIDENCE_BINDING" in row["reason_codes"]
1462
+ assert row["matched_artifact_ids"] == [
1463
+ "fixture.us-consent",
1464
+ "fixture.us-consent-copy",
1465
+ ]
1466
+
1467
+
1468
+ @pytest.mark.parametrize(
1469
+ ("mutation", "reason"),
1470
+ [
1471
+ ("missing_file", "DECLARED_ATTACHMENT_NOT_LOCATED"),
1472
+ ("digest", "ARTIFACT_DIGEST_MISMATCH"),
1473
+ ("size", "ARTIFACT_SIZE_MISMATCH"),
1474
+ ("type", "ARTIFACT_TYPE_MISMATCH"),
1475
+ ("holder", "ARTIFACT_HOLDER_MISMATCH"),
1476
+ ],
1477
+ )
1478
+ def test_declared_attachment_internal_conflicts_are_deterministic(
1479
+ tmp_path: Path, mutation: str, reason: str
1480
+ ) -> None:
1481
+ packet = _packet_copy(tmp_path)
1482
+ inventory = _inventory()
1483
+ artifact = _artifact(inventory, "fixture.us-consent")
1484
+ if mutation == "missing_file":
1485
+ (packet / artifact["relative_path"]).unlink()
1486
+ elif mutation == "digest":
1487
+ artifact["declared_sha256"] = "0" * 64
1488
+ elif mutation == "size":
1489
+ artifact["declared_size_bytes"] += 1
1490
+ elif mutation == "type":
1491
+ artifact["artifact_type"] = "protocol"
1492
+ elif mutation == "holder":
1493
+ artifact["declared_holder_role_id"] = "principal_investigator"
1494
+ manifest = _build(inventory, packet)
1495
+ row = _entry(
1496
+ manifest,
1497
+ "us.45cfr46.116.informed-consent",
1498
+ "consent.participant-materials",
1499
+ )
1500
+ assert row["status"] == "CONFLICTING"
1501
+ assert row["readiness_effect"] == "gap"
1502
+ assert reason in row["reason_codes"]
1503
+ assert manifest["administrative_status"]["submission_readiness"] == "gaps_located"
1504
+
1505
+
1506
+ @pytest.mark.parametrize("signature_state", ["not_located", "unknown"])
1507
+ def test_declared_signature_state_does_not_invent_a_requirement(
1508
+ signature_state: str,
1509
+ ) -> None:
1510
+ inventory = _inventory()
1511
+ artifact = _artifact(inventory, "fixture.us-consent")
1512
+ artifact["declared_structure"]["signature_blocks"][0]["state"] = signature_state
1513
+ artifact["declared_structure"]["certificate"] = None
1514
+ row = _entry(
1515
+ _build(inventory),
1516
+ "us.45cfr46.116.informed-consent",
1517
+ "consent.participant-materials",
1518
+ )
1519
+ assert row["status"] == "DOCUMENTED"
1520
+ assert row["reason_codes"] == ["STRUCTURE_DOCUMENTED"]
1521
+
1522
+
1523
+ @pytest.mark.parametrize(
1524
+ ("issued_on", "expires_on"),
1525
+ [("2000-01-01", "2001-01-01"), ("2099-01-01", "2100-01-01")],
1526
+ )
1527
+ def test_certificate_dates_do_not_invent_freshness_requirements(
1528
+ issued_on: str, expires_on: str
1529
+ ) -> None:
1530
+ context, registry, resolved, _overlay = _synthetic_overlay_authority()
1531
+ inventory = _waiver_inventory()
1532
+ certificate = _artifact(inventory, "fixture.training-certificate")[
1533
+ "declared_structure"
1534
+ ]["certificate"]
1535
+ assert certificate is not None
1536
+ certificate["issued_on"] = issued_on
1537
+ certificate["expires_on"] = expires_on
1538
+ row = _entry(
1539
+ _build(inventory, PACKET_ROOT, context, registry, resolved),
1540
+ "synthetic.packet.waiver-route",
1541
+ "synthetic.waiver-decision",
1542
+ )
1543
+ assert row["status"] == "DOCUMENTED"
1544
+ assert row["reason_codes"] == ["STRUCTURE_DOCUMENTED"]
1545
+
1546
+
1547
+ def test_schema_valid_reversed_certificate_interval_is_a_manifest_conflict() -> None:
1548
+ context, registry, resolved, _overlay = _synthetic_overlay_authority()
1549
+ inventory = _waiver_inventory()
1550
+ certificate = _artifact(inventory, "fixture.training-certificate")[
1551
+ "declared_structure"
1552
+ ]["certificate"]
1553
+ assert certificate is not None
1554
+ certificate["issued_on"] = "2026-01-02"
1555
+ certificate["expires_on"] = "2026-01-01"
1556
+ _validator(INVENTORY_SCHEMA).validate(inventory)
1557
+ validate_submission_packet_inventory(inventory)
1558
+
1559
+ row = _entry(
1560
+ _build(inventory, PACKET_ROOT, context, registry, resolved),
1561
+ "synthetic.packet.waiver-route",
1562
+ "synthetic.waiver-decision",
1563
+ )
1564
+ assert row["status"] == "CONFLICTING"
1565
+ assert row["readiness_effect"] == "gap"
1566
+ assert row["reason_codes"] == ["DECLARED_STRUCTURE_CONFLICT"]
1567
+
1568
+
1569
+ def test_certificate_internal_holder_conflict_uses_only_synthetic_overlay() -> None:
1570
+ context, registry, resolved, _overlay = _synthetic_overlay_authority()
1571
+ inventory = _waiver_inventory()
1572
+ certificate = _artifact(inventory, "fixture.training-certificate")[
1573
+ "declared_structure"
1574
+ ]["certificate"]
1575
+ assert certificate is not None
1576
+ certificate["holder_role_id"] = "principal_investigator"
1577
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
1578
+ row = _entry(
1579
+ manifest,
1580
+ "synthetic.packet.waiver-route",
1581
+ "synthetic.waiver-decision",
1582
+ )
1583
+ assert row["status"] == "CONFLICTING"
1584
+ assert "CERTIFICATE_HOLDER_MISMATCH" in row["reason_codes"]
1585
+
1586
+
1587
+ def test_status_vocabulary_is_covered_without_inventing_a_verdict() -> None:
1588
+ documented = _build()
1589
+ missing_inventory = _inventory()
1590
+ _artifact(missing_inventory, "fixture.us-consent")["evidence_bindings"] = []
1591
+ not_located = _build(missing_inventory)
1592
+ conflict_inventory = _inventory()
1593
+ _artifact(conflict_inventory, "fixture.us-consent")["declared_sha256"] = "0" * 64
1594
+ conflicting = _build(conflict_inventory)
1595
+ unresolved_context = _context()
1596
+ unresolved_context["declared_facts"] = [
1597
+ row
1598
+ for row in unresolved_context["declared_facts"]
1599
+ if row["fact_id"] != "packet_v1.non_clinical"
1600
+ ]
1601
+ registry = _registry()
1602
+ applicability = _build(
1603
+ _inventory(),
1604
+ PACKET_ROOT,
1605
+ unresolved_context,
1606
+ registry,
1607
+ resolve(unresolved_context, registry),
1608
+ )
1609
+ observed_statuses = {
1610
+ row["status"]
1611
+ for manifest in (documented, not_located, conflicting, applicability)
1612
+ for key in ("entries", "unresolved_reasons")
1613
+ for row in manifest[key]
1614
+ }
1615
+ assert observed_statuses == {
1616
+ "DOCUMENTED",
1617
+ "NOT_LOCATED",
1618
+ "CONFLICTING",
1619
+ "APPLICABILITY_UNRESOLVED",
1620
+ "ACCEPTANCE_UNVERIFIED",
1621
+ }
1622
+
1623
+
1624
+ def test_exact_profiled_waiver_route_avoids_false_gap_but_never_claims_grant() -> None:
1625
+ context, registry, resolved, _overlay = _synthetic_overlay_authority()
1626
+ inventory = _waiver_inventory()
1627
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
1628
+ route = _entry(
1629
+ manifest,
1630
+ "synthetic.packet.waiver-route",
1631
+ "synthetic.waiver-decision",
1632
+ )
1633
+ base = _entry(
1634
+ manifest,
1635
+ "synthetic.packet.base-consent",
1636
+ "synthetic.base-consent",
1637
+ )
1638
+ assert route["status"] == "DOCUMENTED"
1639
+ assert route["matched_artifact_ids"] == ["fixture.training-certificate"]
1640
+ assert base["responsibility"] == "packet_owned"
1641
+ assert base["status"] == "ACCEPTANCE_UNVERIFIED"
1642
+ assert base["readiness_effect"] == "unresolved"
1643
+ assert base["reason_codes"] == ["WAIVER_OR_EXCEPTION_CLAIM_UNVERIFIED"]
1644
+ assert "NOT_LOCATED" not in base["status"]
1645
+ assert manifest["administrative_status"]["submission_readiness"] == "unresolved"
1646
+ encoded = json.dumps(manifest, sort_keys=True).casefold()
1647
+ assert "waiver_granted" not in encoded
1648
+ assert '"approved"' not in encoded
1649
+
1650
+
1651
+ def test_profiled_route_without_author_claim_does_not_suppress_base_gap() -> None:
1652
+ context, registry, resolved, _overlay = _synthetic_overlay_authority()
1653
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
1654
+ base = _entry(
1655
+ manifest,
1656
+ "synthetic.packet.base-consent",
1657
+ "synthetic.base-consent",
1658
+ )
1659
+ assert base["status"] == "NOT_LOCATED"
1660
+ assert base["reason_codes"] == ["EXPECTED_PACKET_ARTIFACT_NOT_LOCATED"]
1661
+ assert manifest["administrative_status"]["submission_readiness"] == "gaps_located"
1662
+
1663
+
1664
+ @pytest.mark.parametrize(
1665
+ "mutation",
1666
+ ["wrong_route", "wrong_decision_artifact", "unbound_decision", "holder_conflict"],
1667
+ )
1668
+ def test_inexact_or_conflicting_profiled_route_cannot_suppress_missing_base(
1669
+ mutation: str,
1670
+ ) -> None:
1671
+ context, registry, resolved, _overlay = _synthetic_overlay_authority()
1672
+ inventory = _waiver_inventory()
1673
+ claim = inventory["waiver_or_exception_claims"][0]
1674
+ certificate = _artifact(inventory, "fixture.training-certificate")
1675
+ if mutation == "wrong_route":
1676
+ claim["route_requirement_ids"] = ["us.45cfr46.116.informed-consent"]
1677
+ elif mutation == "wrong_decision_artifact":
1678
+ claim["decision_artifact_id"] = "fixture.us-consent"
1679
+ elif mutation == "unbound_decision":
1680
+ certificate["evidence_bindings"] = []
1681
+ else:
1682
+ certificate["declared_holder_role_id"] = "principal_investigator"
1683
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
1684
+ base = _entry(
1685
+ manifest,
1686
+ "synthetic.packet.base-consent",
1687
+ "synthetic.base-consent",
1688
+ )
1689
+ assert base["status"] == "NOT_LOCATED"
1690
+ assert base["readiness_effect"] == "gap"
1691
+
1692
+
1693
+ def test_unprofiled_or_external_route_state_cannot_suppress_missing_base() -> None:
1694
+ for state in (
1695
+ "external_authority_required",
1696
+ "not_profiled_in_bounded_profile",
1697
+ "not_applicable",
1698
+ ):
1699
+ context, registry, _resolved, overlay = _synthetic_overlay_authority()
1700
+ base = next(
1701
+ row
1702
+ for row in overlay["requirements"]
1703
+ if row["requirement_id"] == "synthetic.packet.base-consent"
1704
+ )
1705
+ base["waiver_or_exception_route"] = {
1706
+ "state": state,
1707
+ "requirement_ids": [],
1708
+ "decision_maker_role": (
1709
+ "institutional_review_office"
1710
+ if state == "external_authority_required"
1711
+ else None
1712
+ ),
1713
+ }
1714
+ _repin_overlay(context, overlay)
1715
+ resolved = resolve(context, registry)
1716
+ manifest = _build(
1717
+ _waiver_inventory(), PACKET_ROOT, context, registry, resolved
1718
+ )
1719
+ row = _entry(
1720
+ manifest,
1721
+ "synthetic.packet.base-consent",
1722
+ "synthetic.base-consent",
1723
+ )
1724
+ assert row["status"] == "NOT_LOCATED", state
1725
+
1726
+
1727
+ @pytest.mark.parametrize("mutation", ["scope", "actor"])
1728
+ def test_route_scope_or_actor_mismatch_cannot_suppress_missing_base(
1729
+ mutation: str,
1730
+ ) -> None:
1731
+ context, registry, _resolved, overlay = _synthetic_overlay_authority()
1732
+ route = next(
1733
+ row
1734
+ for row in overlay["requirements"]
1735
+ if row["requirement_id"] == "synthetic.packet.waiver-route"
1736
+ )
1737
+ if mutation == "scope":
1738
+ route["consumer_scopes"] = ["participant_information"]
1739
+ else:
1740
+ route["obligated_actor"] = "institutional_review_office"
1741
+ _repin_overlay(context, overlay)
1742
+ resolved = resolve(context, registry)
1743
+ manifest = _build(
1744
+ _waiver_inventory(), PACKET_ROOT, context, registry, resolved
1745
+ )
1746
+ base = _entry(
1747
+ manifest,
1748
+ "synthetic.packet.base-consent",
1749
+ "synthetic.base-consent",
1750
+ )
1751
+ assert base["status"] == "NOT_LOCATED"
1752
+
1753
+
1754
+ def test_profiled_route_does_not_recursively_self_satisfy() -> None:
1755
+ context, registry, _resolved, overlay = _synthetic_overlay_authority()
1756
+ route = next(
1757
+ row
1758
+ for row in overlay["requirements"]
1759
+ if row["requirement_id"] == "synthetic.packet.waiver-route"
1760
+ )
1761
+ route["waiver_or_exception_route"] = {
1762
+ "state": "profiled",
1763
+ "requirement_ids": ["synthetic.packet.waiver-route"],
1764
+ "decision_maker_role": "institutional_review_office",
1765
+ }
1766
+ _repin_overlay(context, overlay)
1767
+ resolved = resolve(context, registry)
1768
+ inventory = _waiver_inventory()
1769
+ _artifact(inventory, "fixture.training-certificate")["evidence_bindings"] = []
1770
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
1771
+ route_entry = _entry(
1772
+ manifest,
1773
+ "synthetic.packet.waiver-route",
1774
+ "synthetic.waiver-decision",
1775
+ )
1776
+ base_entry = _entry(
1777
+ manifest,
1778
+ "synthetic.packet.base-consent",
1779
+ "synthetic.base-consent",
1780
+ )
1781
+ assert route_entry["status"] == "NOT_LOCATED"
1782
+ assert base_entry["status"] == "NOT_LOCATED"
1783
+
1784
+
1785
+ @pytest.mark.parametrize(
1786
+ ("value", "source_reference"),
1787
+ [
1788
+ ("documented", "caller.authorization-record"),
1789
+ ("not_provided", None),
1790
+ ("cannot_verify", None),
1791
+ ],
1792
+ )
1793
+ def test_authorization_status_is_exact_copy_through_only(
1794
+ value: str, source_reference: str | None
1795
+ ) -> None:
1796
+ inventory = _inventory()
1797
+ inventory["authorization_status_input"] = {
1798
+ "value": value,
1799
+ "source_reference": source_reference,
1800
+ "provenance": "caller_supplied_no_derivation",
1801
+ }
1802
+ manifest = _build(inventory)
1803
+ assert manifest["administrative_status"]["authorization_status"] == inventory[
1804
+ "authorization_status_input"
1805
+ ]
1806
+
1807
+
1808
+ def test_documented_packet_structure_never_promotes_authorization() -> None:
1809
+ inventory = _inventory()
1810
+ inventory["authorization_status_input"] = {
1811
+ "value": "not_provided",
1812
+ "source_reference": None,
1813
+ "provenance": "caller_supplied_no_derivation",
1814
+ }
1815
+ manifest = _build(inventory)
1816
+ assert any(row["status"] == "DOCUMENTED" for row in manifest["entries"])
1817
+ assert manifest["administrative_status"]["submission_readiness"] == (
1818
+ "no_listed_gaps_located"
1819
+ )
1820
+ assert manifest["administrative_status"]["authorization_status"]["value"] == (
1821
+ "not_provided"
1822
+ )
1823
+
1824
+
1825
+ def test_readiness_changes_do_not_change_authorization_input() -> None:
1826
+ inventory = _inventory()
1827
+ complete = _build(inventory)
1828
+ missing = copy.deepcopy(inventory)
1829
+ _artifact(missing, "fixture.us-consent")["evidence_bindings"] = []
1830
+ gaps = _build(missing)
1831
+ unresolved_context = _context()
1832
+ unresolved_context["overlay_selection_state"]["institutional"] = "not_provided"
1833
+ registry = _registry()
1834
+ unresolved = _build(
1835
+ inventory,
1836
+ PACKET_ROOT,
1837
+ unresolved_context,
1838
+ registry,
1839
+ resolve(unresolved_context, registry),
1840
+ )
1841
+ assert {
1842
+ complete["administrative_status"]["submission_readiness"],
1843
+ gaps["administrative_status"]["submission_readiness"],
1844
+ unresolved["administrative_status"]["submission_readiness"],
1845
+ } == {"no_listed_gaps_located", "gaps_located", "unresolved"}
1846
+ assert complete["administrative_status"]["authorization_status"] == gaps[
1847
+ "administrative_status"
1848
+ ]["authorization_status"] == unresolved["administrative_status"][
1849
+ "authorization_status"
1850
+ ]
1851
+
1852
+
1853
+ def test_fixed_administrative_and_acceptance_boundaries_are_exact() -> None:
1854
+ manifest = _build()
1855
+ assert manifest["administrative_status"]["review_pathway"] == (
1856
+ "institutional determination required"
1857
+ )
1858
+ assert manifest["administrative_status"]["review_timeline"] == (
1859
+ "unknown — obtain current institutional estimate"
1860
+ )
1861
+ assert manifest["acceptance_boundary"] == {
1862
+ "status": "ACCEPTANCE_UNVERIFIED",
1863
+ "reason_code": "INSTITUTIONAL_DETERMINATION_REQUIRED",
1864
+ "affects_submission_readiness": False,
1865
+ }
1866
+ assert manifest["boundary_footer"] == BOUNDARY_FOOTER
1867
+
1868
+
1869
+ def test_recursive_output_has_no_verdict_adequacy_prose_or_excerpt() -> None:
1870
+ manifest = _build()
1871
+ forbidden_keys = {
1872
+ "verdict",
1873
+ "review_level",
1874
+ "approval",
1875
+ "approval_status",
1876
+ "clearance",
1877
+ "compliance",
1878
+ "conformance",
1879
+ "adequacy",
1880
+ "content_coverage",
1881
+ "quality_score",
1882
+ "language_quality",
1883
+ "authorization_decision",
1884
+ "excerpt",
1885
+ "quote",
1886
+ "description",
1887
+ "summary",
1888
+ "structured_expectations",
1889
+ }
1890
+ assert _all_keys(manifest).isdisjoint(forbidden_keys)
1891
+ encoded = json.dumps(manifest, ensure_ascii=False, sort_keys=True)
1892
+ for path in PACKET_ROOT.iterdir():
1893
+ if path.is_file():
1894
+ assert path.read_text(encoding="utf-8").strip() not in encoded
1895
+ assert "Test-only structural attachment row" not in encoded
1896
+ assert "Participant-facing consent materials" not in encoded
1897
+
1898
+
1899
+ def test_681_handoff_is_json_round_trip_pointer_only_without_parallel_verdict() -> None:
1900
+ manifest = _build()
1901
+ transported = json.loads(json.dumps(manifest, ensure_ascii=False, sort_keys=True))
1902
+ assert transported == manifest
1903
+ _validator(MANIFEST_SCHEMA).validate(transported)
1904
+ assert all(
1905
+ row["requirement_ref"]["requirement_pointer"].startswith(
1906
+ ("/profiles/", "/overlays/")
1907
+ )
1908
+ and row["evidence_ref"]["evidence_pointer"].startswith(
1909
+ ("/profiles/", "/overlays/")
1910
+ )
1911
+ for row in transported["entries"]
1912
+ )
1913
+ assert "verdict" not in _all_keys(transported)
1914
+
1915
+
1916
+ def test_live_structured_expectations_and_descriptions_do_not_affect_status() -> None:
1917
+ context, registry, _resolved = _authority()
1918
+ baseline = _build(
1919
+ _inventory(), PACKET_ROOT, context, registry, resolve(context, registry)
1920
+ )
1921
+ profile = next(
1922
+ row
1923
+ for row in registry["profiles"]
1924
+ if row["profile_id"] == "us.hhs.45-cfr-46.subpart-a"
1925
+ )
1926
+ requirement = next(
1927
+ row
1928
+ for row in profile["requirements"]
1929
+ if row["requirement_id"] == "us.45cfr46.116.informed-consent"
1930
+ )
1931
+ requirement["structured_expectations"] = [
1932
+ {
1933
+ "field_id": "synthetic.impossible-prose-test",
1934
+ "operator": "equals",
1935
+ "value": False,
1936
+ }
1937
+ ]
1938
+ for evidence in requirement["evidence_expected"]:
1939
+ evidence["description"] = "This prose must never influence #667."
1940
+ _repin_profile(context, profile)
1941
+ changed = _build(
1942
+ _inventory(), PACKET_ROOT, context, registry, resolve(context, registry)
1943
+ )
1944
+ for evidence_id in ("consent.participant-materials", "consent.irb-determination"):
1945
+ before = _entry(baseline, requirement["requirement_id"], evidence_id)
1946
+ after = _entry(changed, requirement["requirement_id"], evidence_id)
1947
+ assert (
1948
+ after["status"],
1949
+ after["responsibility"],
1950
+ after["reason_codes"],
1951
+ after["matched_artifact_ids"],
1952
+ ) == (
1953
+ before["status"],
1954
+ before["responsibility"],
1955
+ before["reason_codes"],
1956
+ before["matched_artifact_ids"],
1957
+ )
1958
+
1959
+
1960
+ def test_packet_prose_polarity_is_not_interpreted_when_mechanical_binding_matches(
1961
+ tmp_path: Path,
1962
+ ) -> None:
1963
+ packet = _packet_copy(tmp_path)
1964
+ inventory = _inventory()
1965
+ before = _build(inventory, packet)
1966
+ artifact = _artifact(inventory, "fixture.us-consent")
1967
+ path = packet / artifact["relative_path"]
1968
+ path.write_text(
1969
+ "I refuse every substantive proposition; this is adversarial prose.\n",
1970
+ encoding="utf-8",
1971
+ )
1972
+ raw = path.read_bytes()
1973
+ artifact["declared_sha256"] = hashlib.sha256(raw).hexdigest()
1974
+ artifact["declared_size_bytes"] = len(raw)
1975
+ after = _build(inventory, packet)
1976
+ before_row = _entry(
1977
+ before,
1978
+ "us.45cfr46.116.informed-consent",
1979
+ "consent.participant-materials",
1980
+ )
1981
+ after_row = _entry(
1982
+ after,
1983
+ "us.45cfr46.116.informed-consent",
1984
+ "consent.participant-materials",
1985
+ )
1986
+ assert before_row["status"] == after_row["status"] == "DOCUMENTED"
1987
+ assert before_row["reason_codes"] == after_row["reason_codes"]
1988
+ assert before["manifest_digest"] != after["manifest_digest"]
1989
+
1990
+
1991
+ def test_manifest_self_digest_is_exact() -> None:
1992
+ manifest = _build()
1993
+ unsigned = copy.deepcopy(manifest)
1994
+ claimed = unsigned.pop("manifest_digest")
1995
+ assert claimed == digest(unsigned)
1996
+
1997
+
1998
+ @pytest.mark.parametrize(
1999
+ "mutate",
2000
+ [
2001
+ lambda value: value["entries"][0]["requirement_ref"].__setitem__(
2002
+ "requirement_pointer", "/profiles/999/requirements/0"
2003
+ ),
2004
+ lambda value: value["entries"][0]["evidence_ref"].__setitem__(
2005
+ "evidence_digest", "0" * 64
2006
+ ),
2007
+ lambda value: value["packet_observations"][0].__setitem__(
2008
+ "observed_sha256", "0" * 64
2009
+ ),
2010
+ lambda value: value["administrative_status"].__setitem__(
2011
+ "submission_readiness", "gaps_located"
2012
+ ),
2013
+ lambda value: value["administrative_status"]["authorization_status"].update(
2014
+ {
2015
+ "value": "documented",
2016
+ "source_reference": "forged.authorization",
2017
+ }
2018
+ ),
2019
+ lambda value: value["entries"][0].update(
2020
+ {
2021
+ "status": "ACCEPTANCE_UNVERIFIED",
2022
+ "readiness_effect": "unresolved",
2023
+ "reason_codes": ["WAIVER_OR_EXCEPTION_CLAIM_UNVERIFIED"],
2024
+ }
2025
+ ),
2026
+ ],
2027
+ )
2028
+ def test_resigned_manifest_mutations_fail_exact_replay(
2029
+ mutate: Callable[[dict[str, Any]], None]
2030
+ ) -> None:
2031
+ inventory = _inventory()
2032
+ context, registry, resolved = _authority()
2033
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
2034
+ mutate(manifest)
2035
+ _repin_manifest(manifest)
2036
+ with pytest.raises(ContractError):
2037
+ validate_submission_packet_manifest(
2038
+ manifest,
2039
+ inventory,
2040
+ PACKET_ROOT,
2041
+ context=context,
2042
+ registry=registry,
2043
+ resolved=resolved,
2044
+ )
2045
+
2046
+
2047
+ def test_resigned_context_free_overlay_state_fails_shape_and_direct_render() -> None:
2048
+ manifest = build_submission_packet_manifest(_inventory(), PACKET_ROOT)
2049
+ manifest["overlay_selection_state"] = {
2050
+ "institutional": "selected",
2051
+ "funder": "none_declared_by_author",
2052
+ }
2053
+ _repin_manifest(manifest)
2054
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2055
+ with pytest.raises(ContractError, match="overlay_selection_state"):
2056
+ render_submission_packet_manifest(manifest)
2057
+
2058
+
2059
+ def test_resigned_replay_validated_manifest_requires_overlay_state() -> None:
2060
+ manifest = _build()
2061
+ manifest["overlay_selection_state"] = None
2062
+ _repin_manifest(manifest)
2063
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2064
+ with pytest.raises(ContractError, match="overlay_selection_state"):
2065
+ render_submission_packet_manifest(manifest)
2066
+
2067
+
2068
+ def test_resigned_resolved_authority_with_partly_closed_gate_fails_shape() -> None:
2069
+ manifest = _build()
2070
+ manifest["authority_binding"]["downstream_gate"][
2071
+ "all_applicability_resolved"
2072
+ ] = False
2073
+ _repin_manifest(manifest)
2074
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2075
+ with pytest.raises(ContractError, match="fully open"):
2076
+ render_submission_packet_manifest(manifest)
2077
+
2078
+
2079
+ def test_resigned_unresolved_authority_with_open_profile_gate_fails_shape() -> None:
2080
+ context = _context("no-profile.json")
2081
+ registry = _registry()
2082
+ resolved = resolve(context, registry)
2083
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
2084
+ manifest["authority_binding"]["downstream_gate"][
2085
+ "profile_dependent_result_allowed"
2086
+ ] = True
2087
+ _repin_manifest(manifest)
2088
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2089
+ with pytest.raises(ContractError, match="must be false"):
2090
+ render_submission_packet_manifest(manifest)
2091
+
2092
+
2093
+ def test_resigned_closed_gate_with_entries_fails_shape_and_direct_render() -> None:
2094
+ unresolved = build_submission_packet_manifest(_inventory(), PACKET_ROOT)
2095
+ unresolved["entries"] = [copy.deepcopy(_build()["entries"][0])]
2096
+ _repin_manifest(unresolved)
2097
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(unresolved))
2098
+ with pytest.raises(ContractError, match="closed authority or capability gate"):
2099
+ render_submission_packet_manifest(unresolved)
2100
+
2101
+
2102
+ def test_resigned_closed_gate_with_packet_observation_fails_shape() -> None:
2103
+ unresolved = build_submission_packet_manifest(_inventory(), PACKET_ROOT)
2104
+ unresolved["packet_observations"] = [
2105
+ copy.deepcopy(_build()["packet_observations"][0])
2106
+ ]
2107
+ unresolved["packet_pointer"]["observation_digest"] = digest(
2108
+ unresolved["packet_observations"]
2109
+ )
2110
+ _repin_manifest(unresolved)
2111
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(unresolved))
2112
+ with pytest.raises(ContractError, match="closed authority or capability gate"):
2113
+ render_submission_packet_manifest(unresolved)
2114
+
2115
+
2116
+ def test_resigned_located_observation_cannot_claim_attachment_absence() -> None:
2117
+ manifest = _build()
2118
+ observation = manifest["packet_observations"][0]
2119
+ assert observation["state"] == "located"
2120
+ observation["status"] = "CONFLICTING"
2121
+ observation["reason_codes"] = ["DECLARED_ATTACHMENT_NOT_LOCATED"]
2122
+ manifest["packet_pointer"]["observation_digest"] = digest(
2123
+ manifest["packet_observations"]
2124
+ )
2125
+ _repin_manifest(manifest)
2126
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2127
+ with pytest.raises(ContractError, match="located conflict"):
2128
+ render_submission_packet_manifest(manifest)
2129
+
2130
+
2131
+ def test_resigned_overlay_not_provided_without_reason_fails_shape() -> None:
2132
+ manifest = _build()
2133
+ manifest["overlay_selection_state"]["institutional"] = "not_provided"
2134
+ manifest["administrative_status"]["submission_readiness"] = "unresolved"
2135
+ _repin_manifest(manifest)
2136
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2137
+ with pytest.raises(ContractError, match="unresolved_reasons"):
2138
+ render_submission_packet_manifest(manifest)
2139
+
2140
+
2141
+ @pytest.mark.parametrize(
2142
+ "mutate",
2143
+ [
2144
+ lambda value: value["inventory_pointer"].__setitem__(
2145
+ "inventory_id", value["inventory_pointer"]["inventory_id"] + "\n"
2146
+ ),
2147
+ lambda value: value["authority_binding"]["registry_pointer"].__setitem__(
2148
+ "registry_version",
2149
+ value["authority_binding"]["registry_pointer"]["registry_version"]
2150
+ + "\n",
2151
+ ),
2152
+ lambda value: value["entries"][0]["evidence_ref"].__setitem__(
2153
+ "evidence_digest",
2154
+ value["entries"][0]["evidence_ref"]["evidence_digest"] + "\n",
2155
+ ),
2156
+ lambda value: value["packet_observations"][0].__setitem__(
2157
+ "relative_path",
2158
+ value["packet_observations"][0]["relative_path"] + "\n",
2159
+ ),
2160
+ lambda value: value["entries"][0]["requirement_ref"].__setitem__(
2161
+ "requirement_pointer",
2162
+ value["entries"][0]["requirement_ref"]["requirement_pointer"] + "\n",
2163
+ ),
2164
+ lambda value: value["entries"][0]["requirement_ref"].__setitem__(
2165
+ "authority_anchor_pointer",
2166
+ value["entries"][0]["requirement_ref"]["authority_anchor_pointer"]
2167
+ + "\n",
2168
+ ),
2169
+ lambda value: value["entries"][0]["evidence_ref"].__setitem__(
2170
+ "evidence_pointer",
2171
+ value["entries"][0]["evidence_ref"]["evidence_pointer"] + "\n",
2172
+ ),
2173
+ lambda value: value["authority_binding"]["registry_pointer"].__setitem__(
2174
+ "as_of", "2026-W01-1"
2175
+ ),
2176
+ ],
2177
+ )
2178
+ def test_manifest_schema_runtime_absolute_end_parity(
2179
+ mutate: Callable[[dict[str, Any]], None]
2180
+ ) -> None:
2181
+ inventory = _inventory()
2182
+ context, registry, resolved = _authority()
2183
+ manifest = _build(inventory, PACKET_ROOT, context, registry, resolved)
2184
+ mutate(manifest)
2185
+ _repin_manifest(manifest)
2186
+ assert list(_validator(MANIFEST_SCHEMA).iter_errors(manifest))
2187
+ with pytest.raises(ContractError):
2188
+ validate_submission_packet_manifest(
2189
+ manifest,
2190
+ inventory,
2191
+ PACKET_ROOT,
2192
+ context=context,
2193
+ registry=registry,
2194
+ resolved=resolved,
2195
+ )
2196
+
2197
+
2198
+ def test_inventory_key_and_unordered_list_order_do_not_change_manifest() -> None:
2199
+ inventory = _inventory()
2200
+ us_artifact = _artifact(inventory, "fixture.us-consent")
2201
+ us_artifact["evidence_bindings"].append(
2202
+ {"requirement_id": "unused.requirement", "evidence_id": "unused.evidence"}
2203
+ )
2204
+ us_artifact["declared_structure"]["signature_blocks"].append(
2205
+ {"role_id": "sponsor", "state": "present"}
2206
+ )
2207
+ inventory["waiver_or_exception_claims"] = [
2208
+ {
2209
+ "requirement_id": "unused.base-a",
2210
+ "route_requirement_ids": ["unused.route-b", "unused.route-a"],
2211
+ "decision_artifact_id": None,
2212
+ "declared_by": "author",
2213
+ },
2214
+ {
2215
+ "requirement_id": "unused.base-b",
2216
+ "route_requirement_ids": [],
2217
+ "decision_artifact_id": None,
2218
+ "declared_by": "author",
2219
+ },
2220
+ ]
2221
+ baseline = _build(inventory)
2222
+ reordered = json.loads(json.dumps(inventory, ensure_ascii=False, sort_keys=True))
2223
+ reordered["artifacts"].reverse()
2224
+ reordered["packet_responsibility_role_ids"].reverse()
2225
+ reordered["waiver_or_exception_claims"].reverse()
2226
+ for claim in reordered["waiver_or_exception_claims"]:
2227
+ claim["route_requirement_ids"].reverse()
2228
+ for artifact in reordered["artifacts"]:
2229
+ artifact["evidence_bindings"].reverse()
2230
+ artifact["declared_structure"]["signature_blocks"].reverse()
2231
+ after = _build(reordered)
2232
+ assert after == baseline
2233
+
2234
+
2235
+ def test_context_fact_order_and_reconfirmation_do_not_change_manifest() -> None:
2236
+ inventory = _inventory()
2237
+ context, registry, resolved = _authority()
2238
+ baseline = _build(inventory, PACKET_ROOT, context, registry, resolved)
2239
+ reordered = json.loads(json.dumps(context, ensure_ascii=False, sort_keys=True))
2240
+ reordered["declared_facts"].reverse()
2241
+ reordered["confirmed_at"] = "2026-08-09T15:00:00+08:00"
2242
+ replayed = resolve(reordered, registry)
2243
+ after = _build(inventory, PACKET_ROOT, reordered, registry, replayed)
2244
+ assert after == baseline
2245
+
2246
+
2247
+ def test_output_order_is_canonical() -> None:
2248
+ manifest = _build()
2249
+ observations = [row["artifact_id"] for row in manifest["packet_observations"]]
2250
+ assert observations == sorted(observations)
2251
+ entry_keys = [
2252
+ (
2253
+ row["requirement_ref"]["axis"],
2254
+ row["requirement_ref"]["authority_kind"],
2255
+ row["requirement_ref"]["authority_id"],
2256
+ row["requirement_ref"]["requirement_id"],
2257
+ row["evidence_ref"]["evidence_pointer"],
2258
+ )
2259
+ for row in manifest["entries"]
2260
+ ]
2261
+ assert entry_keys == sorted(entry_keys)
2262
+ assert all(row["reason_codes"] == sorted(row["reason_codes"]) for row in manifest["entries"])
2263
+
2264
+
2265
+ def test_identical_packet_re_root_does_not_change_manifest(tmp_path: Path) -> None:
2266
+ copied = _packet_copy(tmp_path)
2267
+ assert _build(packet_root=copied) == _build(packet_root=PACKET_ROOT)
2268
+
2269
+
2270
+ def test_locale_timezone_and_cwd_do_not_change_manifest(
2271
+ tmp_path: Path, monkeypatch: pytest.MonkeyPatch
2272
+ ) -> None:
2273
+ baseline = _build()
2274
+ monkeypatch.setenv("LANG", "tr_TR.UTF-8")
2275
+ monkeypatch.setenv("LC_ALL", "C")
2276
+ monkeypatch.setenv("TZ", "Pacific/Honolulu")
2277
+ monkeypatch.chdir(tmp_path)
2278
+ assert _build() == baseline
2279
+
2280
+
2281
+ def test_authorization_copy_through_is_digest_load_bearing_but_row_statuses_are_not() -> None:
2282
+ original_inventory = _inventory()
2283
+ original = _build(original_inventory)
2284
+ documented_inventory = copy.deepcopy(original_inventory)
2285
+ documented_inventory["authorization_status_input"] = {
2286
+ "value": "documented",
2287
+ "source_reference": "caller.authorization-record",
2288
+ "provenance": "caller_supplied_no_derivation",
2289
+ }
2290
+ documented = _build(documented_inventory)
2291
+ assert documented["manifest_digest"] != original["manifest_digest"]
2292
+ assert [
2293
+ (row["status"], row["reason_codes"], row["matched_artifact_ids"])
2294
+ for row in documented["entries"]
2295
+ ] == [
2296
+ (row["status"], row["reason_codes"], row["matched_artifact_ids"])
2297
+ for row in original["entries"]
2298
+ ]
2299
+
2300
+
2301
+ def test_renderer_is_deterministic_and_never_includes_packet_prose() -> None:
2302
+ manifest = _build()
2303
+ first = render_submission_packet_manifest(manifest)
2304
+ second = render_submission_packet_manifest(
2305
+ json.loads(json.dumps(manifest, sort_keys=True))
2306
+ )
2307
+ assert first == second
2308
+ assert "Review pathway: institutional determination required" in first
2309
+ assert "Submission readiness: no_listed_gaps_located" in first
2310
+ assert "Authorization status: not_provided" in first
2311
+ assert "Review timeline: unknown — obtain current institutional estimate" in first
2312
+ assert "## Packet Observations" in first
2313
+ assert RENDERED_BOUNDARY in first
2314
+ assert "STRUCTURAL-FIXTURE-667" not in first
2315
+ assert "Test-only structural attachment row" not in first
2316
+
2317
+
2318
+ def test_resolved_empty_renderer_does_not_invent_unresolved_entry_status() -> None:
2319
+ context, registry, _resolved = _authority()
2320
+ profile = next(
2321
+ row
2322
+ for row in registry["profiles"]
2323
+ if row["profile_id"] == "us.hhs.45-cfr-46.subpart-a"
2324
+ )
2325
+ for requirement in profile["requirements"]:
2326
+ requirement["consumer_scopes"] = [
2327
+ scope
2328
+ for scope in requirement["consumer_scopes"]
2329
+ if scope != "submission_packet"
2330
+ ]
2331
+ _repin_profile(context, profile)
2332
+ resolved = resolve(context, registry)
2333
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
2334
+ assert manifest["entries"] == []
2335
+ assert manifest["excluded_requirements"] == []
2336
+ assert manifest["unresolved_reasons"] == []
2337
+ assert manifest["administrative_status"]["submission_readiness"] == (
2338
+ "no_listed_gaps_located"
2339
+ )
2340
+ rendered = render_submission_packet_manifest(manifest)
2341
+ assert "| none | none | none | none | none | none | none |" in rendered
2342
+ assert packet_runtime._md("APPLICABILITY_UNRESOLVED") not in rendered
2343
+
2344
+
2345
+ def test_context_free_empty_renderer_carries_unresolved_only_in_reason_table() -> None:
2346
+ manifest = build_submission_packet_manifest(_inventory(), PACKET_ROOT)
2347
+ rendered = render_submission_packet_manifest(manifest)
2348
+ assert "| none | none | none | none | none | none | none |" in rendered
2349
+ assert (
2350
+ f"| {packet_runtime._md('APPLICABILITY_UNRESOLVED')} | "
2351
+ f"{packet_runtime._md('AUTHORITY_INPUT_NOT_PROVIDED')} | "
2352
+ "not provided | not provided |"
2353
+ ) in rendered
2354
+
2355
+
2356
+ def test_renderer_preserves_false_applicability_accounting() -> None:
2357
+ context, registry, _resolved, overlay = _synthetic_overlay_authority()
2358
+ base = next(
2359
+ row
2360
+ for row in overlay["requirements"]
2361
+ if row["requirement_id"] == "synthetic.packet.base-consent"
2362
+ )
2363
+ base["applies_if"] = {
2364
+ "op": "fact_equals",
2365
+ "fact_id": "data.special_category",
2366
+ "value": True,
2367
+ }
2368
+ _repin_overlay(context, overlay)
2369
+ special = next(
2370
+ row
2371
+ for row in context["declared_facts"]
2372
+ if row["fact_id"] == "data.special_category"
2373
+ )
2374
+ special["state"], special["value"] = "declared", False
2375
+ resolved = resolve(context, registry)
2376
+ manifest = _build(_inventory(), PACKET_ROOT, context, registry, resolved)
2377
+ excluded = next(
2378
+ row
2379
+ for row in manifest["excluded_requirements"]
2380
+ if row["requirement_ref"]["requirement_id"]
2381
+ == "synthetic.packet.base-consent"
2382
+ )
2383
+ rendered = render_submission_packet_manifest(manifest)
2384
+ assert "## Excluded Requirements" in rendered
2385
+ assert (
2386
+ f"| {packet_runtime._md('synthetic.packet.base-consent')} | "
2387
+ f"{packet_runtime._md(excluded['requirement_ref']['requirement_pointer'])} | "
2388
+ f"{packet_runtime._md('resolved_predicate_false')} |"
2389
+ ) in rendered
2390
+
2391
+
2392
+ def test_renderer_neutralizes_markdown_active_inventory_path(
2393
+ tmp_path: Path,
2394
+ ) -> None:
2395
+ packet = _packet_copy(tmp_path)
2396
+ inventory = _inventory()
2397
+ artifact = _artifact(inventory, "fixture.us-consent")
2398
+ original = packet / artifact["relative_path"]
2399
+ malicious = (
2400
+ "<img src=x>-![x](javascript:alert(1))-`code`-pipe|cell-"
2401
+ "line\u2028# heading.txt"
2402
+ )
2403
+ original.rename(packet / malicious)
2404
+ artifact["relative_path"] = malicious
2405
+ manifest = _build(inventory, packet)
2406
+ rendered = render_submission_packet_manifest(manifest)
2407
+ assert malicious not in rendered
2408
+ assert "javascript:" not in rendered
2409
+ assert "<img" not in rendered
2410
+ assert "\u2028" not in rendered
2411
+ observation_lines = rendered.split("## Packet Observations", 1)[1].split(
2412
+ "## Mechanical Evidence Entries", 1
2413
+ )[0]
2414
+ assert sum(
2415
+ line.startswith(f"| {packet_runtime._md(artifact['artifact_id'])} |")
2416
+ for line in observation_lines.splitlines()
2417
+ ) == 1
2418
+
2419
+ try:
2420
+ from markdown_it import MarkdownIt
2421
+ except ImportError:
2422
+ return
2423
+ tokens = MarkdownIt().parse(rendered)
2424
+ assert not any(
2425
+ token.type in {"link_open", "image", "html_inline", "html_block"}
2426
+ for token in tokens
2427
+ )
2428
+
2429
+
2430
+ def _cli_inputs(tmp_path: Path) -> dict[str, Path]:
2431
+ context, registry, resolved = _authority()
2432
+ paths = {
2433
+ "inventory": tmp_path / "inventory.json",
2434
+ "context": tmp_path / "context.json",
2435
+ "registry": tmp_path / "registry.json",
2436
+ "resolved": tmp_path / "resolved.json",
2437
+ "manifest": tmp_path / "manifest.json",
2438
+ "rendered": tmp_path / "manifest.md",
2439
+ }
2440
+ _write_json(paths["inventory"], _inventory())
2441
+ _write_json(paths["context"], context)
2442
+ _write_json(paths["registry"], registry)
2443
+ _write_json(paths["resolved"], resolved)
2444
+ return paths
2445
+
2446
+
2447
+ def _authority_cli_args(paths: dict[str, Path]) -> list[str]:
2448
+ return [
2449
+ "--context",
2450
+ str(paths["context"]),
2451
+ "--registry",
2452
+ str(paths["registry"]),
2453
+ "--resolved",
2454
+ str(paths["resolved"]),
2455
+ ]
2456
+
2457
+
2458
+ def test_cli_build_validate_and_render_all_use_exact_replay(tmp_path: Path) -> None:
2459
+ paths = _cli_inputs(tmp_path)
2460
+ common = [
2461
+ "--inventory",
2462
+ str(paths["inventory"]),
2463
+ "--packet-root",
2464
+ str(PACKET_ROOT),
2465
+ *_authority_cli_args(paths),
2466
+ ]
2467
+ built = subprocess.run(
2468
+ [
2469
+ sys.executable,
2470
+ str(RUNTIME),
2471
+ "build",
2472
+ *common,
2473
+ "--output",
2474
+ str(paths["manifest"]),
2475
+ ],
2476
+ text=True,
2477
+ capture_output=True,
2478
+ check=False,
2479
+ )
2480
+ assert built.returncode == 0, built.stderr
2481
+ built_manifest = _json(paths["manifest"])
2482
+ _validator(MANIFEST_SCHEMA).validate(built_manifest)
2483
+ manifest_bytes = paths["manifest"].read_bytes()
2484
+ assert manifest_bytes == packet_runtime._canonical_bytes(built_manifest)
2485
+ assert len(manifest_bytes) <= packet_runtime.MAX_MANIFEST_BYTES
2486
+
2487
+ validated = subprocess.run(
2488
+ [
2489
+ sys.executable,
2490
+ str(RUNTIME),
2491
+ "validate",
2492
+ "--manifest",
2493
+ str(paths["manifest"]),
2494
+ *common,
2495
+ ],
2496
+ text=True,
2497
+ capture_output=True,
2498
+ check=False,
2499
+ )
2500
+ assert validated.returncode == 0, validated.stderr
2501
+
2502
+ rendered = subprocess.run(
2503
+ [
2504
+ sys.executable,
2505
+ str(RUNTIME),
2506
+ "render",
2507
+ "--manifest",
2508
+ str(paths["manifest"]),
2509
+ *common,
2510
+ "--output",
2511
+ str(paths["rendered"]),
2512
+ ],
2513
+ text=True,
2514
+ capture_output=True,
2515
+ check=False,
2516
+ )
2517
+ assert rendered.returncode == 0, rendered.stderr
2518
+ assert RENDERED_BOUNDARY in paths["rendered"].read_text(encoding="utf-8")
2519
+
2520
+ forged = _json(paths["manifest"])
2521
+ forged["entries"][0]["matched_artifact_ids"] = []
2522
+ _repin_manifest(forged)
2523
+ _write_json(paths["manifest"], forged)
2524
+ rejected = subprocess.run(
2525
+ [
2526
+ sys.executable,
2527
+ str(RUNTIME),
2528
+ "render",
2529
+ "--manifest",
2530
+ str(paths["manifest"]),
2531
+ *common,
2532
+ ],
2533
+ text=True,
2534
+ capture_output=True,
2535
+ check=False,
2536
+ )
2537
+ assert rejected.returncode == 2
2538
+ assert "exactly match deterministic replay" in rejected.stderr
2539
+
2540
+
2541
+ @pytest.mark.parametrize(
2542
+ ("target", "raw"),
2543
+ [
2544
+ ("inventory", '{"schema_version":"a","schema_version":"b"}'),
2545
+ ("inventory", '{"value":NaN}'),
2546
+ ("context", '{"schema_version":"a","schema_version":"b"}'),
2547
+ ("context", '{"value":Infinity}'),
2548
+ ("registry", '{"schema_version":"a","schema_version":"b"}'),
2549
+ ("registry", '{"value":-Infinity}'),
2550
+ ("resolved", '{"schema_version":"a","schema_version":"b"}'),
2551
+ ("resolved", '{"value":NaN}'),
2552
+ ("manifest", '{"schema_version":"a","schema_version":"b"}'),
2553
+ ("manifest", '{"value":Infinity}'),
2554
+ ],
2555
+ )
2556
+ def test_cli_rejects_duplicate_keys_and_nonfinite_json(
2557
+ tmp_path: Path, target: str, raw: str
2558
+ ) -> None:
2559
+ paths = _cli_inputs(tmp_path)
2560
+ manifest = _build()
2561
+ _write_json(paths["manifest"], manifest)
2562
+ paths[target].write_text(raw, encoding="utf-8")
2563
+ common = [
2564
+ "--inventory",
2565
+ str(paths["inventory"]),
2566
+ "--packet-root",
2567
+ str(PACKET_ROOT),
2568
+ *_authority_cli_args(paths),
2569
+ ]
2570
+ command = "validate" if target == "manifest" else "build"
2571
+ argv = [sys.executable, str(RUNTIME), command]
2572
+ if command == "validate":
2573
+ argv.extend(["--manifest", str(paths["manifest"])])
2574
+ argv.extend(common)
2575
+ completed = subprocess.run(
2576
+ argv,
2577
+ text=True,
2578
+ capture_output=True,
2579
+ check=False,
2580
+ )
2581
+ assert completed.returncode == 2
2582
+ assert "duplicate JSON key" in completed.stderr or "non-finite" in completed.stderr
2583
+
2584
+
2585
+ @pytest.mark.parametrize(
2586
+ "raw",
2587
+ [
2588
+ '{"oversized_integer":' + "9" * 5000 + "}",
2589
+ '{"deep":' + "[" * 2000 + "0" + "]" * 2000 + "}",
2590
+ ],
2591
+ )
2592
+ def test_cli_rejects_parser_resource_edges_with_rc2_and_no_traceback(
2593
+ tmp_path: Path, raw: str
2594
+ ) -> None:
2595
+ paths = _cli_inputs(tmp_path)
2596
+ paths["inventory"].write_text(raw, encoding="utf-8")
2597
+ completed = subprocess.run(
2598
+ [
2599
+ sys.executable,
2600
+ str(RUNTIME),
2601
+ "build",
2602
+ "--inventory",
2603
+ str(paths["inventory"]),
2604
+ "--packet-root",
2605
+ str(PACKET_ROOT),
2606
+ *_authority_cli_args(paths),
2607
+ ],
2608
+ text=True,
2609
+ capture_output=True,
2610
+ check=False,
2611
+ )
2612
+ assert completed.returncode == 2
2613
+ assert completed.stderr.startswith("ERROR:")
2614
+ assert "Traceback" not in completed.stderr
2615
+
2616
+
2617
+ def test_cli_rejects_escaped_lone_surrogate_with_rc2_and_no_traceback(
2618
+ tmp_path: Path,
2619
+ ) -> None:
2620
+ paths = _cli_inputs(tmp_path)
2621
+ inventory = _inventory()
2622
+ inventory["artifacts"][0]["relative_path"] = "surrogate-\ud800.txt"
2623
+ paths["inventory"].write_text(
2624
+ json.dumps(inventory, ensure_ascii=True), encoding="utf-8"
2625
+ )
2626
+ completed = subprocess.run(
2627
+ [
2628
+ sys.executable,
2629
+ str(RUNTIME),
2630
+ "build",
2631
+ "--inventory",
2632
+ str(paths["inventory"]),
2633
+ "--packet-root",
2634
+ str(PACKET_ROOT),
2635
+ *_authority_cli_args(paths),
2636
+ ],
2637
+ text=True,
2638
+ capture_output=True,
2639
+ check=False,
2640
+ )
2641
+ assert completed.returncode == 2
2642
+ assert completed.stderr.startswith("ERROR:")
2643
+ assert "surrogate" in completed.stderr
2644
+ assert "Traceback" not in completed.stderr