okstra 0.130.4 → 0.131.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (365) hide show
  1. package/README.md +0 -1
  2. package/docs/architecture.md +2 -2
  3. package/docs/cli.md +1 -1
  4. package/docs/for-ai/README.md +0 -2
  5. package/docs/for-ai/skills/okstra-run.md +13 -2
  6. package/docs/for-ai/skills/okstra-setup.md +4 -1
  7. package/docs/project-structure-overview.md +5 -4
  8. package/docs/task-process/implementation-planning.md +13 -0
  9. package/docs/task-process/implementation.md +17 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +7 -0
  13. package/runtime/bin/lib/okstra/usage.sh +4 -4
  14. package/runtime/prompts/lead/okstra-lead-contract.md +2 -2
  15. package/runtime/prompts/lead/plan-body-verification.md +26 -5
  16. package/runtime/prompts/lead/report-writer.md +6 -2
  17. package/runtime/prompts/profiles/_common-contract.md +2 -1
  18. package/runtime/prompts/profiles/_implementation-deliverable.md +6 -1
  19. package/runtime/prompts/profiles/_implementation-executor.md +2 -2
  20. package/runtime/prompts/profiles/_implementation-verifier.md +33 -10
  21. package/runtime/prompts/profiles/final-verification.md +21 -6
  22. package/runtime/prompts/profiles/implementation-planning.md +16 -4
  23. package/runtime/python/okstra_ctl/codex_dispatch.py +31 -0
  24. package/runtime/python/okstra_ctl/conformance.py +49 -11
  25. package/runtime/python/okstra_ctl/report_finalize.py +52 -1
  26. package/runtime/python/okstra_ctl/run.py +15 -3
  27. package/runtime/python/okstra_ctl/worker_prompt_contract.py +14 -6
  28. package/runtime/python/okstra_ctl/worker_prompt_policy.py +19 -1
  29. package/runtime/python/okstra_vendor/__init__.py +0 -44
  30. package/runtime/schemas/final-report-v1.0.schema.json +99 -5
  31. package/runtime/skills/okstra-run/SKILL.md +11 -4
  32. package/runtime/skills/okstra-setup/SKILL.md +3 -2
  33. package/runtime/skills/okstra-setup/references/project-config.md +16 -7
  34. package/runtime/templates/reports/final-report.template.md +15 -9
  35. package/runtime/templates/reports/i18n/en.json +1 -0
  36. package/runtime/templates/reports/i18n/ko.json +1 -0
  37. package/runtime/validators/lib/fixtures.sh +6 -0
  38. package/runtime/validators/validate-run.py +2019 -96
  39. package/src/cli-registry.mjs +0 -7
  40. package/src/commands/lifecycle/doctor.mjs +0 -9
  41. package/src/lib/skill-catalog.mjs +0 -1
  42. package/docs/for-ai/skills/okstra-graphify.md +0 -64
  43. package/runtime/python/okstra_ctl/graphify_cmd.py +0 -225
  44. package/runtime/python/okstra_vendor/graphify/.vendored-version +0 -1
  45. package/runtime/python/okstra_vendor/graphify/__init__.py +0 -28
  46. package/runtime/python/okstra_vendor/graphify/__main__.py +0 -1371
  47. package/runtime/python/okstra_vendor/graphify/analyze.py +0 -540
  48. package/runtime/python/okstra_vendor/graphify/benchmark.py +0 -129
  49. package/runtime/python/okstra_vendor/graphify/build.py +0 -107
  50. package/runtime/python/okstra_vendor/graphify/cache.py +0 -169
  51. package/runtime/python/okstra_vendor/graphify/cluster.py +0 -137
  52. package/runtime/python/okstra_vendor/graphify/detect.py +0 -510
  53. package/runtime/python/okstra_vendor/graphify/export.py +0 -1014
  54. package/runtime/python/okstra_vendor/graphify/extract.py +0 -3277
  55. package/runtime/python/okstra_vendor/graphify/hooks.py +0 -220
  56. package/runtime/python/okstra_vendor/graphify/ingest.py +0 -297
  57. package/runtime/python/okstra_vendor/graphify/manifest.py +0 -4
  58. package/runtime/python/okstra_vendor/graphify/report.py +0 -175
  59. package/runtime/python/okstra_vendor/graphify/security.py +0 -203
  60. package/runtime/python/okstra_vendor/graphify/serve.py +0 -373
  61. package/runtime/python/okstra_vendor/graphify/skill-aider.md +0 -1184
  62. package/runtime/python/okstra_vendor/graphify/skill-claw.md +0 -1184
  63. package/runtime/python/okstra_vendor/graphify/skill-codex.md +0 -1242
  64. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +0 -1268
  65. package/runtime/python/okstra_vendor/graphify/skill-droid.md +0 -1239
  66. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +0 -1183
  67. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +0 -1238
  68. package/runtime/python/okstra_vendor/graphify/skill-trae.md +0 -1208
  69. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +0 -253
  70. package/runtime/python/okstra_vendor/graphify/skill-windows.md +0 -1245
  71. package/runtime/python/okstra_vendor/graphify/skill.md +0 -1319
  72. package/runtime/python/okstra_vendor/graphify/transcribe.py +0 -182
  73. package/runtime/python/okstra_vendor/graphify/validate.py +0 -72
  74. package/runtime/python/okstra_vendor/graphify/watch.py +0 -188
  75. package/runtime/python/okstra_vendor/graphify/wiki.py +0 -214
  76. package/runtime/python/okstra_vendor/networkx/__init__.py +0 -62
  77. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +0 -134
  78. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +0 -26
  79. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +0 -259
  80. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +0 -71
  81. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +0 -412
  82. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +0 -396
  83. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +0 -150
  84. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +0 -149
  85. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +0 -369
  86. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +0 -44
  87. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +0 -143
  88. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +0 -53
  89. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +0 -265
  90. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +0 -1508
  91. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +0 -255
  92. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +0 -83
  93. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +0 -5
  94. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +0 -122
  95. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +0 -302
  96. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +0 -255
  97. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +0 -160
  98. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +0 -127
  99. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +0 -164
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +0 -88
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +0 -322
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +0 -290
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +0 -289
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +0 -57
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +0 -360
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +0 -105
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +0 -603
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +0 -316
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +0 -590
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +0 -232
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +0 -526
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +0 -112
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +0 -69
  114. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +0 -168
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +0 -205
  116. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +0 -164
  117. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +0 -20
  118. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +0 -591
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +0 -236
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +0 -282
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +0 -364
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +0 -227
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +0 -96
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +0 -150
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +0 -107
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +0 -357
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +0 -130
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +0 -787
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +0 -88
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +0 -331
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +0 -150
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +0 -200
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +0 -128
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +0 -209
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +0 -141
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +0 -361
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +0 -181
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +0 -95
  139. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +0 -172
  140. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +0 -443
  141. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +0 -818
  142. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +0 -732
  143. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +0 -4
  144. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +0 -505
  145. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +0 -565
  146. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +0 -163
  147. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +0 -28
  148. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +0 -153
  149. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +0 -354
  150. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +0 -171
  151. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +0 -30
  152. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +0 -216
  153. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +0 -79
  154. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +0 -338
  155. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +0 -162
  156. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +0 -220
  157. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +0 -384
  158. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +0 -227
  159. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +0 -452
  160. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +0 -347
  161. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +0 -6
  162. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +0 -115
  163. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +0 -394
  164. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +0 -282
  165. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +0 -71
  166. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +0 -359
  167. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +0 -196
  168. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +0 -11
  169. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +0 -811
  170. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +0 -616
  171. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +0 -408
  172. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +0 -1270
  173. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +0 -592
  174. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +0 -220
  175. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +0 -235
  176. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +0 -152
  177. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +0 -88
  178. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +0 -588
  179. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +0 -142
  180. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +0 -416
  181. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +0 -1234
  182. package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +0 -677
  183. package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +0 -1392
  184. package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +0 -1095
  185. package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +0 -272
  186. package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +0 -142
  187. package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +0 -268
  188. package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +0 -167
  189. package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +0 -470
  190. package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +0 -11
  191. package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +0 -370
  192. package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +0 -407
  193. package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +0 -238
  194. package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +0 -241
  195. package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +0 -178
  196. package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +0 -611
  197. package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +0 -356
  198. package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +0 -662
  199. package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +0 -425
  200. package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +0 -300
  201. package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +0 -194
  202. package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +0 -435
  203. package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +0 -483
  204. package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +0 -57
  205. package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +0 -196
  206. package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +0 -107
  207. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +0 -7
  208. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +0 -1306
  209. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +0 -336
  210. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +0 -1262
  211. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +0 -352
  212. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +0 -308
  213. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +0 -264
  214. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +0 -1102
  215. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +0 -192
  216. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +0 -2
  217. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +0 -337
  218. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +0 -498
  219. package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +0 -687
  220. package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +0 -280
  221. package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +0 -1148
  222. package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +0 -27
  223. package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +0 -738
  224. package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +0 -78
  225. package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +0 -59
  226. package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +0 -219
  227. package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +0 -155
  228. package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +0 -4
  229. package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +0 -324
  230. package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +0 -468
  231. package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +0 -633
  232. package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +0 -77
  233. package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +0 -73
  234. package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +0 -464
  235. package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +0 -1463
  236. package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +0 -306
  237. package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +0 -98
  238. package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +0 -167
  239. package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +0 -138
  240. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +0 -5
  241. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +0 -239
  242. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +0 -264
  243. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +0 -716
  244. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +0 -625
  245. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +0 -2542
  246. package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +0 -2107
  247. package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +0 -966
  248. package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +0 -404
  249. package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +0 -30
  250. package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +0 -296
  251. package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +0 -374
  252. package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +0 -564
  253. package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +0 -406
  254. package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +0 -981
  255. package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +0 -142
  256. package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +0 -406
  257. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +0 -5
  258. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +0 -90
  259. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +0 -576
  260. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +0 -529
  261. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +0 -185
  262. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +0 -182
  263. package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +0 -7
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@@ -1,787 +0,0 @@
1
- """Group centrality measures."""
2
-
3
- from copy import deepcopy
4
-
5
- import networkx as nx
6
- from networkx.algorithms.centrality.betweenness import (
7
- _accumulate_endpoints,
8
- _single_source_dijkstra_path_basic,
9
- _single_source_shortest_path_basic,
10
- )
11
- from networkx.utils.decorators import not_implemented_for
12
-
13
- __all__ = [
14
- "group_betweenness_centrality",
15
- "group_closeness_centrality",
16
- "group_degree_centrality",
17
- "group_in_degree_centrality",
18
- "group_out_degree_centrality",
19
- "prominent_group",
20
- ]
21
-
22
-
23
- @nx._dispatchable(edge_attrs="weight")
24
- def group_betweenness_centrality(G, C, normalized=True, weight=None, endpoints=False):
25
- r"""Compute the group betweenness centrality for a group of nodes.
26
-
27
- Group betweenness centrality of a group of nodes $C$ is the sum of the
28
- fraction of all-pairs shortest paths that pass through any vertex in $C$
29
-
30
- .. math::
31
-
32
- c_B(v) =\sum_{s,t \in V} \frac{\sigma(s, t|v)}{\sigma(s, t)}
33
-
34
- where $V$ is the set of nodes, $\sigma(s, t)$ is the number of
35
- shortest $(s, t)$-paths, and $\sigma(s, t|C)$ is the number of
36
- those paths passing through some node in group $C$. Note that
37
- $(s, t)$ are not members of the group ($V-C$ is the set of nodes
38
- in $V$ that are not in $C$).
39
-
40
- Parameters
41
- ----------
42
- G : graph
43
- A NetworkX graph.
44
-
45
- C : list or set or list of lists or list of sets
46
- A group or a list of groups containing nodes which belong to G, for which group betweenness
47
- centrality is to be calculated.
48
-
49
- normalized : bool, optional (default=True)
50
- If True, group betweenness is normalized by `1/((|V|-|C|)(|V|-|C|-1))`
51
- where `|V|` is the number of nodes in G and `|C|` is the number of nodes in C.
52
-
53
- weight : None or string, optional (default=None)
54
- If None, all edge weights are considered equal.
55
- Otherwise holds the name of the edge attribute used as weight.
56
- The weight of an edge is treated as the length or distance between the two sides.
57
-
58
- endpoints : bool, optional (default=False)
59
- If True include the endpoints in the shortest path counts.
60
-
61
- Raises
62
- ------
63
- NodeNotFound
64
- If node(s) in C are not present in G.
65
-
66
- Returns
67
- -------
68
- betweenness : list of floats or float
69
- If C is a single group then return a float. If C is a list with
70
- several groups then return a list of group betweenness centralities.
71
-
72
- See Also
73
- --------
74
- betweenness_centrality
75
-
76
- Notes
77
- -----
78
- Group betweenness centrality is described in [1]_ and its importance discussed in [3]_.
79
- The initial implementation of the algorithm is mentioned in [2]_. This function uses
80
- an improved algorithm presented in [4]_.
81
-
82
- The number of nodes in the group must be a maximum of n - 2 where `n`
83
- is the total number of nodes in the graph.
84
-
85
- For weighted graphs the edge weights must be greater than zero.
86
- Zero edge weights can produce an infinite number of equal length
87
- paths between pairs of nodes.
88
-
89
- The total number of paths between source and target is counted
90
- differently for directed and undirected graphs. Directed paths
91
- between "u" and "v" are counted as two possible paths (one each
92
- direction) while undirected paths between "u" and "v" are counted
93
- as one path. Said another way, the sum in the expression above is
94
- over all ``s != t`` for directed graphs and for ``s < t`` for undirected graphs.
95
-
96
-
97
- References
98
- ----------
99
- .. [1] M G Everett and S P Borgatti:
100
- The Centrality of Groups and Classes.
101
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
102
- http://www.analytictech.com/borgatti/group_centrality.htm
103
- .. [2] Ulrik Brandes:
104
- On Variants of Shortest-Path Betweenness
105
- Centrality and their Generic Computation.
106
- Social Networks 30(2):136-145, 2008.
107
- http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.72.9610&rep=rep1&type=pdf
108
- .. [3] Sourav Medya et. al.:
109
- Group Centrality Maximization via Network Design.
110
- SIAM International Conference on Data Mining, SDM 2018, 126–134.
111
- https://sites.cs.ucsb.edu/~arlei/pubs/sdm18.pdf
112
- .. [4] Rami Puzis, Yuval Elovici, and Shlomi Dolev.
113
- "Fast algorithm for successive computation of group betweenness centrality."
114
- https://journals.aps.org/pre/pdf/10.1103/PhysRevE.76.056709
115
-
116
- """
117
- GBC = [] # initialize betweenness
118
- list_of_groups = True
119
- # check weather C contains one or many groups
120
- if any(el in G for el in C):
121
- C = [C]
122
- list_of_groups = False
123
- set_v = {node for group in C for node in group}
124
- if set_v - G.nodes: # element(s) of C not in G
125
- raise nx.NodeNotFound(f"The node(s) {set_v - G.nodes} are in C but not in G.")
126
-
127
- # pre-processing
128
- PB, sigma, D = _group_preprocessing(G, set_v, weight)
129
-
130
- # the algorithm for each group
131
- for group in C:
132
- group = set(group) # set of nodes in group
133
- # initialize the matrices of the sigma and the PB
134
- GBC_group = 0
135
- sigma_m = deepcopy(sigma)
136
- PB_m = deepcopy(PB)
137
- sigma_m_v = deepcopy(sigma_m)
138
- PB_m_v = deepcopy(PB_m)
139
- for v in group:
140
- GBC_group += PB_m[v][v]
141
- for x in group:
142
- for y in group:
143
- dxvy = 0
144
- dxyv = 0
145
- dvxy = 0
146
- if not (
147
- sigma_m[x][y] == 0 or sigma_m[x][v] == 0 or sigma_m[v][y] == 0
148
- ):
149
- if D[x][v] == D[x][y] + D[y][v]:
150
- dxyv = sigma_m[x][y] * sigma_m[y][v] / sigma_m[x][v]
151
- if D[x][y] == D[x][v] + D[v][y]:
152
- dxvy = sigma_m[x][v] * sigma_m[v][y] / sigma_m[x][y]
153
- if D[v][y] == D[v][x] + D[x][y]:
154
- dvxy = sigma_m[v][x] * sigma[x][y] / sigma[v][y]
155
- sigma_m_v[x][y] = sigma_m[x][y] * (1 - dxvy)
156
- PB_m_v[x][y] = PB_m[x][y] - PB_m[x][y] * dxvy
157
- if y != v:
158
- PB_m_v[x][y] -= PB_m[x][v] * dxyv
159
- if x != v:
160
- PB_m_v[x][y] -= PB_m[v][y] * dvxy
161
- sigma_m, sigma_m_v = sigma_m_v, sigma_m
162
- PB_m, PB_m_v = PB_m_v, PB_m
163
-
164
- # endpoints
165
- v, c = len(G), len(group)
166
- if not endpoints:
167
- scale = 0
168
- # if the graph is connected then subtract the endpoints from
169
- # the count for all the nodes in the graph. else count how many
170
- # nodes are connected to the group's nodes and subtract that.
171
- if nx.is_directed(G):
172
- if nx.is_strongly_connected(G):
173
- scale = c * (2 * v - c - 1)
174
- elif nx.is_connected(G):
175
- scale = c * (2 * v - c - 1)
176
- if scale == 0:
177
- for group_node1 in group:
178
- for node in D[group_node1]:
179
- if node != group_node1:
180
- if node in group:
181
- scale += 1
182
- else:
183
- scale += 2
184
- GBC_group -= scale
185
-
186
- # normalized
187
- if normalized:
188
- scale = 1 / ((v - c) * (v - c - 1))
189
- GBC_group *= scale
190
-
191
- # If undirected than count only the undirected edges
192
- elif not G.is_directed():
193
- GBC_group /= 2
194
-
195
- GBC.append(GBC_group)
196
- if list_of_groups:
197
- return GBC
198
- return GBC[0]
199
-
200
-
201
- def _group_preprocessing(G, set_v, weight):
202
- sigma = {}
203
- delta = {}
204
- D = {}
205
- betweenness = dict.fromkeys(G, 0)
206
- for s in G:
207
- if weight is None: # use BFS
208
- S, P, sigma[s], D[s] = _single_source_shortest_path_basic(G, s)
209
- else: # use Dijkstra's algorithm
210
- S, P, sigma[s], D[s] = _single_source_dijkstra_path_basic(G, s, weight)
211
- betweenness, delta[s] = _accumulate_endpoints(betweenness, S, P, sigma[s], s)
212
- for i in delta[s]: # add the paths from s to i and rescale sigma
213
- if s != i:
214
- delta[s][i] += 1
215
- if weight is not None:
216
- sigma[s][i] = sigma[s][i] / 2
217
- # building the path betweenness matrix only for nodes that appear in the group
218
- PB = dict.fromkeys(G)
219
- for group_node1 in set_v:
220
- PB[group_node1] = dict.fromkeys(G, 0.0)
221
- for group_node2 in set_v:
222
- if group_node2 not in D[group_node1]:
223
- continue
224
- for node in G:
225
- # if node is connected to the two group nodes than continue
226
- if group_node2 in D[node] and group_node1 in D[node]:
227
- if (
228
- D[node][group_node2]
229
- == D[node][group_node1] + D[group_node1][group_node2]
230
- ):
231
- PB[group_node1][group_node2] += (
232
- delta[node][group_node2]
233
- * sigma[node][group_node1]
234
- * sigma[group_node1][group_node2]
235
- / sigma[node][group_node2]
236
- )
237
- return PB, sigma, D
238
-
239
-
240
- @nx._dispatchable(edge_attrs="weight")
241
- def prominent_group(
242
- G, k, weight=None, C=None, endpoints=False, normalized=True, greedy=False
243
- ):
244
- r"""Find the prominent group of size $k$ in graph $G$. The prominence of the
245
- group is evaluated by the group betweenness centrality.
246
-
247
- Group betweenness centrality of a group of nodes $C$ is the sum of the
248
- fraction of all-pairs shortest paths that pass through any vertex in $C$
249
-
250
- .. math::
251
-
252
- c_B(v) =\sum_{s,t \in V} \frac{\sigma(s, t|v)}{\sigma(s, t)}
253
-
254
- where $V$ is the set of nodes, $\sigma(s, t)$ is the number of
255
- shortest $(s, t)$-paths, and $\sigma(s, t|C)$ is the number of
256
- those paths passing through some node in group $C$. Note that
257
- $(s, t)$ are not members of the group ($V-C$ is the set of nodes
258
- in $V$ that are not in $C$).
259
-
260
- Parameters
261
- ----------
262
- G : graph
263
- A NetworkX graph.
264
-
265
- k : int
266
- The number of nodes in the group.
267
-
268
- normalized : bool, optional (default=True)
269
- If True, group betweenness is normalized by ``1/((|V|-|C|)(|V|-|C|-1))``
270
- where ``|V|`` is the number of nodes in G and ``|C|`` is the number of
271
- nodes in C.
272
-
273
- weight : None or string, optional (default=None)
274
- If None, all edge weights are considered equal.
275
- Otherwise holds the name of the edge attribute used as weight.
276
- The weight of an edge is treated as the length or distance between the two sides.
277
-
278
- endpoints : bool, optional (default=False)
279
- If True include the endpoints in the shortest path counts.
280
-
281
- C : list or set, optional (default=None)
282
- list of nodes which won't be candidates of the prominent group.
283
-
284
- greedy : bool, optional (default=False)
285
- Using a naive greedy algorithm in order to find non-optimal prominent
286
- group. For scale free networks the results are negligibly below the optimal
287
- results.
288
-
289
- Raises
290
- ------
291
- NodeNotFound
292
- If node(s) in C are not present in G.
293
-
294
- Returns
295
- -------
296
- max_GBC : float
297
- The group betweenness centrality of the prominent group.
298
-
299
- max_group : list
300
- The list of nodes in the prominent group.
301
-
302
- See Also
303
- --------
304
- betweenness_centrality, group_betweenness_centrality
305
-
306
- Notes
307
- -----
308
- Group betweenness centrality is described in [1]_ and its importance discussed in [3]_.
309
- The algorithm is described in [2]_ and is based on techniques mentioned in [4]_.
310
-
311
- The number of nodes in the group must be a maximum of ``n - 2`` where ``n``
312
- is the total number of nodes in the graph.
313
-
314
- For weighted graphs the edge weights must be greater than zero.
315
- Zero edge weights can produce an infinite number of equal length
316
- paths between pairs of nodes.
317
-
318
- The total number of paths between source and target is counted
319
- differently for directed and undirected graphs. Directed paths
320
- between "u" and "v" are counted as two possible paths (one each
321
- direction) while undirected paths between "u" and "v" are counted
322
- as one path. Said another way, the sum in the expression above is
323
- over all ``s != t`` for directed graphs and for ``s < t`` for undirected graphs.
324
-
325
- References
326
- ----------
327
- .. [1] M G Everett and S P Borgatti:
328
- The Centrality of Groups and Classes.
329
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
330
- http://www.analytictech.com/borgatti/group_centrality.htm
331
- .. [2] Rami Puzis, Yuval Elovici, and Shlomi Dolev:
332
- "Finding the Most Prominent Group in Complex Networks"
333
- AI communications 20(4): 287-296, 2007.
334
- https://www.researchgate.net/profile/Rami_Puzis2/publication/220308855
335
- .. [3] Sourav Medya et. al.:
336
- Group Centrality Maximization via Network Design.
337
- SIAM International Conference on Data Mining, SDM 2018, 126–134.
338
- https://sites.cs.ucsb.edu/~arlei/pubs/sdm18.pdf
339
- .. [4] Rami Puzis, Yuval Elovici, and Shlomi Dolev.
340
- "Fast algorithm for successive computation of group betweenness centrality."
341
- https://journals.aps.org/pre/pdf/10.1103/PhysRevE.76.056709
342
- """
343
- import numpy as np
344
- import pandas as pd
345
-
346
- if C is not None:
347
- C = set(C)
348
- if C - G.nodes: # element(s) of C not in G
349
- raise nx.NodeNotFound(f"The node(s) {C - G.nodes} are in C but not in G.")
350
- nodes = list(G.nodes - C)
351
- else:
352
- nodes = list(G.nodes)
353
- DF_tree = nx.Graph()
354
- DF_tree.__networkx_cache__ = None # Disable caching
355
- PB, sigma, D = _group_preprocessing(G, nodes, weight)
356
- betweenness = pd.DataFrame.from_dict(PB)
357
- if C is not None:
358
- for node in C:
359
- # remove from the betweenness all the nodes not part of the group
360
- betweenness = betweenness.drop(index=node)
361
- betweenness = betweenness.drop(columns=node)
362
- CL = [node for _, node in sorted(zip(np.diag(betweenness), nodes), reverse=True)]
363
- max_GBC = 0
364
- max_group = []
365
- DF_tree.add_node(
366
- 1,
367
- CL=CL,
368
- betweenness=betweenness,
369
- GBC=0,
370
- GM=[],
371
- sigma=sigma,
372
- cont=dict(zip(nodes, np.diag(betweenness))),
373
- )
374
-
375
- # the algorithm
376
- DF_tree.nodes[1]["heu"] = 0
377
- for i in range(k):
378
- DF_tree.nodes[1]["heu"] += DF_tree.nodes[1]["cont"][DF_tree.nodes[1]["CL"][i]]
379
- max_GBC, DF_tree, max_group = _dfbnb(
380
- G, k, DF_tree, max_GBC, 1, D, max_group, nodes, greedy
381
- )
382
-
383
- v = len(G)
384
- if not endpoints:
385
- scale = 0
386
- # if the graph is connected then subtract the endpoints from
387
- # the count for all the nodes in the graph. else count how many
388
- # nodes are connected to the group's nodes and subtract that.
389
- if nx.is_directed(G):
390
- if nx.is_strongly_connected(G):
391
- scale = k * (2 * v - k - 1)
392
- elif nx.is_connected(G):
393
- scale = k * (2 * v - k - 1)
394
- if scale == 0:
395
- for group_node1 in max_group:
396
- for node in D[group_node1]:
397
- if node != group_node1:
398
- if node in max_group:
399
- scale += 1
400
- else:
401
- scale += 2
402
- max_GBC -= scale
403
-
404
- # normalized
405
- if normalized:
406
- scale = 1 / ((v - k) * (v - k - 1))
407
- max_GBC *= scale
408
-
409
- # If undirected then count only the undirected edges
410
- elif not G.is_directed():
411
- max_GBC /= 2
412
- max_GBC = float(f"{max_GBC:.2f}")
413
- return max_GBC, max_group
414
-
415
-
416
- def _dfbnb(G, k, DF_tree, max_GBC, root, D, max_group, nodes, greedy):
417
- # stopping condition - if we found a group of size k and with higher GBC then prune
418
- if len(DF_tree.nodes[root]["GM"]) == k and DF_tree.nodes[root]["GBC"] > max_GBC:
419
- return DF_tree.nodes[root]["GBC"], DF_tree, DF_tree.nodes[root]["GM"]
420
- # stopping condition - if the size of group members equal to k or there are less than
421
- # k - |GM| in the candidate list or the heuristic function plus the GBC is below the
422
- # maximal GBC found then prune
423
- if (
424
- len(DF_tree.nodes[root]["GM"]) == k
425
- or len(DF_tree.nodes[root]["CL"]) <= k - len(DF_tree.nodes[root]["GM"])
426
- or DF_tree.nodes[root]["GBC"] + DF_tree.nodes[root]["heu"] <= max_GBC
427
- ):
428
- return max_GBC, DF_tree, max_group
429
-
430
- # finding the heuristic of both children
431
- node_p, node_m, DF_tree = _heuristic(k, root, DF_tree, D, nodes, greedy)
432
-
433
- # finding the child with the bigger heuristic + GBC and expand
434
- # that node first if greedy then only expand the plus node
435
- if greedy:
436
- max_GBC, DF_tree, max_group = _dfbnb(
437
- G, k, DF_tree, max_GBC, node_p, D, max_group, nodes, greedy
438
- )
439
-
440
- elif (
441
- DF_tree.nodes[node_p]["GBC"] + DF_tree.nodes[node_p]["heu"]
442
- > DF_tree.nodes[node_m]["GBC"] + DF_tree.nodes[node_m]["heu"]
443
- ):
444
- max_GBC, DF_tree, max_group = _dfbnb(
445
- G, k, DF_tree, max_GBC, node_p, D, max_group, nodes, greedy
446
- )
447
- max_GBC, DF_tree, max_group = _dfbnb(
448
- G, k, DF_tree, max_GBC, node_m, D, max_group, nodes, greedy
449
- )
450
- else:
451
- max_GBC, DF_tree, max_group = _dfbnb(
452
- G, k, DF_tree, max_GBC, node_m, D, max_group, nodes, greedy
453
- )
454
- max_GBC, DF_tree, max_group = _dfbnb(
455
- G, k, DF_tree, max_GBC, node_p, D, max_group, nodes, greedy
456
- )
457
- return max_GBC, DF_tree, max_group
458
-
459
-
460
- def _heuristic(k, root, DF_tree, D, nodes, greedy):
461
- import numpy as np
462
-
463
- # This helper function add two nodes to DF_tree - one left son and the
464
- # other right son, finds their heuristic, CL, GBC, and GM
465
- node_p = DF_tree.number_of_nodes() + 1
466
- node_m = DF_tree.number_of_nodes() + 2
467
- added_node = DF_tree.nodes[root]["CL"][0]
468
-
469
- # adding the plus node
470
- DF_tree.add_nodes_from([(node_p, deepcopy(DF_tree.nodes[root]))])
471
- DF_tree.nodes[node_p]["GM"].append(added_node)
472
- DF_tree.nodes[node_p]["GBC"] += DF_tree.nodes[node_p]["cont"][added_node]
473
- root_node = DF_tree.nodes[root]
474
- for x in nodes:
475
- for y in nodes:
476
- dxvy = 0
477
- dxyv = 0
478
- dvxy = 0
479
- if not (
480
- root_node["sigma"][x][y] == 0
481
- or root_node["sigma"][x][added_node] == 0
482
- or root_node["sigma"][added_node][y] == 0
483
- ):
484
- if D[x][added_node] == D[x][y] + D[y][added_node]:
485
- dxyv = (
486
- root_node["sigma"][x][y]
487
- * root_node["sigma"][y][added_node]
488
- / root_node["sigma"][x][added_node]
489
- )
490
- if D[x][y] == D[x][added_node] + D[added_node][y]:
491
- dxvy = (
492
- root_node["sigma"][x][added_node]
493
- * root_node["sigma"][added_node][y]
494
- / root_node["sigma"][x][y]
495
- )
496
- if D[added_node][y] == D[added_node][x] + D[x][y]:
497
- dvxy = (
498
- root_node["sigma"][added_node][x]
499
- * root_node["sigma"][x][y]
500
- / root_node["sigma"][added_node][y]
501
- )
502
- DF_tree.nodes[node_p]["sigma"][x][y] = root_node["sigma"][x][y] * (1 - dxvy)
503
- DF_tree.nodes[node_p]["betweenness"].loc[y, x] = (
504
- root_node["betweenness"][x][y] - root_node["betweenness"][x][y] * dxvy
505
- )
506
- if y != added_node:
507
- DF_tree.nodes[node_p]["betweenness"].loc[y, x] -= (
508
- root_node["betweenness"][x][added_node] * dxyv
509
- )
510
- if x != added_node:
511
- DF_tree.nodes[node_p]["betweenness"].loc[y, x] -= (
512
- root_node["betweenness"][added_node][y] * dvxy
513
- )
514
-
515
- DF_tree.nodes[node_p]["CL"] = [
516
- node
517
- for _, node in sorted(
518
- zip(np.diag(DF_tree.nodes[node_p]["betweenness"]), nodes), reverse=True
519
- )
520
- if node not in DF_tree.nodes[node_p]["GM"]
521
- ]
522
- DF_tree.nodes[node_p]["cont"] = dict(
523
- zip(nodes, np.diag(DF_tree.nodes[node_p]["betweenness"]))
524
- )
525
- DF_tree.nodes[node_p]["heu"] = 0
526
- for i in range(k - len(DF_tree.nodes[node_p]["GM"])):
527
- DF_tree.nodes[node_p]["heu"] += DF_tree.nodes[node_p]["cont"][
528
- DF_tree.nodes[node_p]["CL"][i]
529
- ]
530
-
531
- # adding the minus node - don't insert the first node in the CL to GM
532
- # Insert minus node only if isn't greedy type algorithm
533
- if not greedy:
534
- DF_tree.add_nodes_from([(node_m, deepcopy(DF_tree.nodes[root]))])
535
- DF_tree.nodes[node_m]["CL"].pop(0)
536
- DF_tree.nodes[node_m]["cont"].pop(added_node)
537
- DF_tree.nodes[node_m]["heu"] = 0
538
- for i in range(k - len(DF_tree.nodes[node_m]["GM"])):
539
- DF_tree.nodes[node_m]["heu"] += DF_tree.nodes[node_m]["cont"][
540
- DF_tree.nodes[node_m]["CL"][i]
541
- ]
542
- else:
543
- node_m = None
544
-
545
- return node_p, node_m, DF_tree
546
-
547
-
548
- @nx._dispatchable(edge_attrs="weight")
549
- def group_closeness_centrality(G, S, weight=None):
550
- r"""Compute the group closeness centrality for a group of nodes.
551
-
552
- Group closeness centrality of a group of nodes $S$ is a measure
553
- of how close the group is to the other nodes in the graph.
554
-
555
- .. math::
556
-
557
- c_{close}(S) = \frac{|V-S|}{\sum_{v \in V-S} d_{S, v}}
558
-
559
- d_{S, v} = min_{u \in S} (d_{u, v})
560
-
561
- where $V$ is the set of nodes, $d_{S, v}$ is the distance of
562
- the group $S$ from $v$ defined as above. ($V-S$ is the set of nodes
563
- in $V$ that are not in $S$).
564
-
565
- Parameters
566
- ----------
567
- G : graph
568
- A NetworkX graph.
569
-
570
- S : list or set
571
- S is a group of nodes which belong to G, for which group closeness
572
- centrality is to be calculated.
573
-
574
- weight : None or string, optional (default=None)
575
- If None, all edge weights are considered equal.
576
- Otherwise holds the name of the edge attribute used as weight.
577
- The weight of an edge is treated as the length or distance between the two sides.
578
-
579
- Raises
580
- ------
581
- NodeNotFound
582
- If node(s) in S are not present in G.
583
-
584
- Returns
585
- -------
586
- closeness : float
587
- Group closeness centrality of the group S.
588
-
589
- See Also
590
- --------
591
- closeness_centrality
592
-
593
- Notes
594
- -----
595
- The measure was introduced in [1]_.
596
- The formula implemented here is described in [2]_.
597
-
598
- Higher values of closeness indicate greater centrality.
599
-
600
- It is assumed that 1 / 0 is 0 (required in the case of directed graphs,
601
- or when a shortest path length is 0).
602
-
603
- The number of nodes in the group must be a maximum of n - 1 where `n`
604
- is the total number of nodes in the graph.
605
-
606
- For directed graphs, the incoming distance is utilized here. To use the
607
- outward distance, act on `G.reverse()`.
608
-
609
- For weighted graphs the edge weights must be greater than zero.
610
- Zero edge weights can produce an infinite number of equal length
611
- paths between pairs of nodes.
612
-
613
- References
614
- ----------
615
- .. [1] M G Everett and S P Borgatti:
616
- The Centrality of Groups and Classes.
617
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
618
- http://www.analytictech.com/borgatti/group_centrality.htm
619
- .. [2] J. Zhao et. al.:
620
- Measuring and Maximizing Group Closeness Centrality over
621
- Disk Resident Graphs.
622
- WWWConference Proceedings, 2014. 689-694.
623
- https://doi.org/10.1145/2567948.2579356
624
- """
625
- if G.is_directed():
626
- G = G.reverse() # reverse view
627
- closeness = 0 # initialize to 0
628
- V = set(G) # set of nodes in G
629
- S = set(S) # set of nodes in group S
630
- V_S = V - S # set of nodes in V but not S
631
- shortest_path_lengths = nx.multi_source_dijkstra_path_length(G, S, weight=weight)
632
- # accumulation
633
- for v in V_S:
634
- try:
635
- closeness += shortest_path_lengths[v]
636
- except KeyError: # no path exists
637
- closeness += 0
638
- try:
639
- closeness = len(V_S) / closeness
640
- except ZeroDivisionError: # 1 / 0 assumed as 0
641
- closeness = 0
642
- return closeness
643
-
644
-
645
- @nx._dispatchable
646
- def group_degree_centrality(G, S):
647
- """Compute the group degree centrality for a group of nodes.
648
-
649
- Group degree centrality of a group of nodes $S$ is the fraction
650
- of non-group members connected to group members.
651
-
652
- Parameters
653
- ----------
654
- G : graph
655
- A NetworkX graph.
656
-
657
- S : list or set
658
- S is a group of nodes which belong to G, for which group degree
659
- centrality is to be calculated.
660
-
661
- Raises
662
- ------
663
- NetworkXError
664
- If node(s) in S are not in G.
665
-
666
- Returns
667
- -------
668
- centrality : float
669
- Group degree centrality of the group S.
670
-
671
- See Also
672
- --------
673
- degree_centrality
674
- group_in_degree_centrality
675
- group_out_degree_centrality
676
-
677
- Notes
678
- -----
679
- The measure was introduced in [1]_.
680
-
681
- The number of nodes in the group must be a maximum of n - 1 where `n`
682
- is the total number of nodes in the graph.
683
-
684
- References
685
- ----------
686
- .. [1] M G Everett and S P Borgatti:
687
- The Centrality of Groups and Classes.
688
- Journal of Mathematical Sociology. 23(3): 181-201. 1999.
689
- http://www.analytictech.com/borgatti/group_centrality.htm
690
- """
691
- centrality = len(set().union(*[set(G.neighbors(i)) for i in S]) - set(S))
692
- centrality /= len(G.nodes()) - len(S)
693
- return centrality
694
-
695
-
696
- @not_implemented_for("undirected")
697
- @nx._dispatchable
698
- def group_in_degree_centrality(G, S):
699
- """Compute the group in-degree centrality for a group of nodes.
700
-
701
- Group in-degree centrality of a group of nodes $S$ is the fraction
702
- of non-group members connected to group members by incoming edges.
703
-
704
- Parameters
705
- ----------
706
- G : graph
707
- A NetworkX graph.
708
-
709
- S : list or set
710
- S is a group of nodes which belong to G, for which group in-degree
711
- centrality is to be calculated.
712
-
713
- Returns
714
- -------
715
- centrality : float
716
- Group in-degree centrality of the group S.
717
-
718
- Raises
719
- ------
720
- NetworkXNotImplemented
721
- If G is undirected.
722
-
723
- NodeNotFound
724
- If node(s) in S are not in G.
725
-
726
- See Also
727
- --------
728
- degree_centrality
729
- group_degree_centrality
730
- group_out_degree_centrality
731
-
732
- Notes
733
- -----
734
- The number of nodes in the group must be a maximum of n - 1 where `n`
735
- is the total number of nodes in the graph.
736
-
737
- `G.neighbors(i)` gives nodes with an outward edge from i, in a DiGraph,
738
- so for group in-degree centrality, the reverse graph is used.
739
- """
740
- return group_degree_centrality(G.reverse(), S)
741
-
742
-
743
- @not_implemented_for("undirected")
744
- @nx._dispatchable
745
- def group_out_degree_centrality(G, S):
746
- """Compute the group out-degree centrality for a group of nodes.
747
-
748
- Group out-degree centrality of a group of nodes $S$ is the fraction
749
- of non-group members connected to group members by outgoing edges.
750
-
751
- Parameters
752
- ----------
753
- G : graph
754
- A NetworkX graph.
755
-
756
- S : list or set
757
- S is a group of nodes which belong to G, for which group in-degree
758
- centrality is to be calculated.
759
-
760
- Returns
761
- -------
762
- centrality : float
763
- Group out-degree centrality of the group S.
764
-
765
- Raises
766
- ------
767
- NetworkXNotImplemented
768
- If G is undirected.
769
-
770
- NodeNotFound
771
- If node(s) in S are not in G.
772
-
773
- See Also
774
- --------
775
- degree_centrality
776
- group_degree_centrality
777
- group_in_degree_centrality
778
-
779
- Notes
780
- -----
781
- The number of nodes in the group must be a maximum of n - 1 where `n`
782
- is the total number of nodes in the graph.
783
-
784
- `G.neighbors(i)` gives nodes with an outward edge from i, in a DiGraph,
785
- so for group out-degree centrality, the graph itself is used.
786
- """
787
- return group_degree_centrality(G, S)