okstra 0.130.4 → 0.131.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (365) hide show
  1. package/README.md +0 -1
  2. package/docs/architecture.md +2 -2
  3. package/docs/cli.md +1 -1
  4. package/docs/for-ai/README.md +0 -2
  5. package/docs/for-ai/skills/okstra-run.md +13 -2
  6. package/docs/for-ai/skills/okstra-setup.md +4 -1
  7. package/docs/project-structure-overview.md +5 -4
  8. package/docs/task-process/implementation-planning.md +13 -0
  9. package/docs/task-process/implementation.md +17 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +7 -0
  13. package/runtime/bin/lib/okstra/usage.sh +4 -4
  14. package/runtime/prompts/lead/okstra-lead-contract.md +2 -2
  15. package/runtime/prompts/lead/plan-body-verification.md +26 -5
  16. package/runtime/prompts/lead/report-writer.md +6 -2
  17. package/runtime/prompts/profiles/_common-contract.md +2 -1
  18. package/runtime/prompts/profiles/_implementation-deliverable.md +6 -1
  19. package/runtime/prompts/profiles/_implementation-executor.md +2 -2
  20. package/runtime/prompts/profiles/_implementation-verifier.md +33 -10
  21. package/runtime/prompts/profiles/final-verification.md +21 -6
  22. package/runtime/prompts/profiles/implementation-planning.md +16 -4
  23. package/runtime/python/okstra_ctl/codex_dispatch.py +31 -0
  24. package/runtime/python/okstra_ctl/conformance.py +49 -11
  25. package/runtime/python/okstra_ctl/report_finalize.py +52 -1
  26. package/runtime/python/okstra_ctl/run.py +15 -3
  27. package/runtime/python/okstra_ctl/worker_prompt_contract.py +14 -6
  28. package/runtime/python/okstra_ctl/worker_prompt_policy.py +19 -1
  29. package/runtime/python/okstra_vendor/__init__.py +0 -44
  30. package/runtime/schemas/final-report-v1.0.schema.json +99 -5
  31. package/runtime/skills/okstra-run/SKILL.md +11 -4
  32. package/runtime/skills/okstra-setup/SKILL.md +3 -2
  33. package/runtime/skills/okstra-setup/references/project-config.md +16 -7
  34. package/runtime/templates/reports/final-report.template.md +15 -9
  35. package/runtime/templates/reports/i18n/en.json +1 -0
  36. package/runtime/templates/reports/i18n/ko.json +1 -0
  37. package/runtime/validators/lib/fixtures.sh +6 -0
  38. package/runtime/validators/validate-run.py +2019 -96
  39. package/src/cli-registry.mjs +0 -7
  40. package/src/commands/lifecycle/doctor.mjs +0 -9
  41. package/src/lib/skill-catalog.mjs +0 -1
  42. package/docs/for-ai/skills/okstra-graphify.md +0 -64
  43. package/runtime/python/okstra_ctl/graphify_cmd.py +0 -225
  44. package/runtime/python/okstra_vendor/graphify/.vendored-version +0 -1
  45. package/runtime/python/okstra_vendor/graphify/__init__.py +0 -28
  46. package/runtime/python/okstra_vendor/graphify/__main__.py +0 -1371
  47. package/runtime/python/okstra_vendor/graphify/analyze.py +0 -540
  48. package/runtime/python/okstra_vendor/graphify/benchmark.py +0 -129
  49. package/runtime/python/okstra_vendor/graphify/build.py +0 -107
  50. package/runtime/python/okstra_vendor/graphify/cache.py +0 -169
  51. package/runtime/python/okstra_vendor/graphify/cluster.py +0 -137
  52. package/runtime/python/okstra_vendor/graphify/detect.py +0 -510
  53. package/runtime/python/okstra_vendor/graphify/export.py +0 -1014
  54. package/runtime/python/okstra_vendor/graphify/extract.py +0 -3277
  55. package/runtime/python/okstra_vendor/graphify/hooks.py +0 -220
  56. package/runtime/python/okstra_vendor/graphify/ingest.py +0 -297
  57. package/runtime/python/okstra_vendor/graphify/manifest.py +0 -4
  58. package/runtime/python/okstra_vendor/graphify/report.py +0 -175
  59. package/runtime/python/okstra_vendor/graphify/security.py +0 -203
  60. package/runtime/python/okstra_vendor/graphify/serve.py +0 -373
  61. package/runtime/python/okstra_vendor/graphify/skill-aider.md +0 -1184
  62. package/runtime/python/okstra_vendor/graphify/skill-claw.md +0 -1184
  63. package/runtime/python/okstra_vendor/graphify/skill-codex.md +0 -1242
  64. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +0 -1268
  65. package/runtime/python/okstra_vendor/graphify/skill-droid.md +0 -1239
  66. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +0 -1183
  67. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +0 -1238
  68. package/runtime/python/okstra_vendor/graphify/skill-trae.md +0 -1208
  69. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +0 -253
  70. package/runtime/python/okstra_vendor/graphify/skill-windows.md +0 -1245
  71. package/runtime/python/okstra_vendor/graphify/skill.md +0 -1319
  72. package/runtime/python/okstra_vendor/graphify/transcribe.py +0 -182
  73. package/runtime/python/okstra_vendor/graphify/validate.py +0 -72
  74. package/runtime/python/okstra_vendor/graphify/watch.py +0 -188
  75. package/runtime/python/okstra_vendor/graphify/wiki.py +0 -214
  76. package/runtime/python/okstra_vendor/networkx/__init__.py +0 -62
  77. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +0 -134
  78. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +0 -26
  79. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +0 -259
  80. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +0 -71
  81. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +0 -412
  82. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +0 -396
  83. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +0 -150
  84. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +0 -149
  85. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +0 -369
  86. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +0 -44
  87. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +0 -143
  88. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +0 -53
  89. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +0 -265
  90. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +0 -1508
  91. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +0 -255
  92. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +0 -83
  93. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +0 -5
  94. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +0 -122
  95. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +0 -302
  96. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +0 -255
  97. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +0 -160
  98. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +0 -127
  99. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +0 -164
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +0 -88
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +0 -322
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +0 -290
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +0 -289
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +0 -57
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +0 -360
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +0 -105
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +0 -603
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +0 -316
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +0 -590
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +0 -232
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +0 -526
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +0 -112
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +0 -69
  114. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +0 -168
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +0 -205
  116. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +0 -164
  117. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +0 -20
  118. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +0 -591
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +0 -236
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +0 -282
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +0 -364
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +0 -227
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +0 -96
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +0 -150
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +0 -107
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +0 -357
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +0 -130
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +0 -787
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +0 -88
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +0 -331
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +0 -150
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +0 -200
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +0 -128
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +0 -209
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +0 -141
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +0 -361
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +0 -181
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +0 -95
  139. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +0 -172
  140. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +0 -443
  141. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +0 -818
  142. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +0 -732
  143. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +0 -4
  144. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +0 -505
  145. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +0 -565
  146. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +0 -163
  147. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +0 -28
  148. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +0 -153
  149. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +0 -354
  150. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +0 -171
  151. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +0 -30
  152. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +0 -216
  153. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +0 -79
  154. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +0 -338
  155. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +0 -162
  156. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +0 -220
  157. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +0 -384
  158. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +0 -227
  159. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +0 -452
  160. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +0 -347
  161. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +0 -6
  162. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +0 -115
  163. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +0 -394
  164. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +0 -282
  165. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +0 -71
  166. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +0 -359
  167. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +0 -196
  168. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +0 -11
  169. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +0 -811
  170. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +0 -616
  171. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +0 -408
  172. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +0 -1270
  173. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +0 -592
  174. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +0 -220
  175. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +0 -235
  176. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +0 -152
  177. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +0 -88
  178. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +0 -588
  179. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +0 -142
  180. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +0 -416
  181. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +0 -1234
  182. package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +0 -677
  183. package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +0 -1392
  184. package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +0 -1095
  185. package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +0 -272
  186. package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +0 -142
  187. package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +0 -268
  188. package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +0 -167
  189. package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +0 -470
  190. package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +0 -11
  191. package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +0 -370
  192. package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +0 -407
  193. package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +0 -238
  194. package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +0 -241
  195. package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +0 -178
  196. package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +0 -611
  197. package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +0 -356
  198. package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +0 -662
  199. package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +0 -425
  200. package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +0 -300
  201. package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +0 -194
  202. package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +0 -435
  203. package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +0 -483
  204. package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +0 -57
  205. package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +0 -196
  206. package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +0 -107
  207. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +0 -7
  208. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +0 -1306
  209. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +0 -336
  210. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +0 -1262
  211. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +0 -352
  212. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +0 -308
  213. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +0 -264
  214. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +0 -1102
  215. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +0 -192
  216. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +0 -2
  217. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +0 -337
  218. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +0 -498
  219. package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +0 -687
  220. package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +0 -280
  221. package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +0 -1148
  222. package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +0 -27
  223. package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +0 -738
  224. package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +0 -78
  225. package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +0 -59
  226. package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +0 -219
  227. package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +0 -155
  228. package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +0 -4
  229. package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +0 -324
  230. package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +0 -468
  231. package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +0 -633
  232. package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +0 -77
  233. package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +0 -73
  234. package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +0 -464
  235. package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +0 -1463
  236. package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +0 -306
  237. package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +0 -98
  238. package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +0 -167
  239. package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +0 -138
  240. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +0 -5
  241. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +0 -239
  242. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +0 -264
  243. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +0 -716
  244. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +0 -625
  245. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +0 -2542
  246. package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +0 -2107
  247. package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +0 -966
  248. package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +0 -404
  249. package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +0 -30
  250. package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +0 -296
  251. package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +0 -374
  252. package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +0 -564
  253. package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +0 -406
  254. package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +0 -981
  255. package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +0 -142
  256. package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +0 -406
  257. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +0 -5
  258. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +0 -90
  259. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +0 -576
  260. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +0 -529
  261. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +0 -185
  262. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +0 -182
  263. package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +0 -7
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  363. package/runtime/python/okstra_vendor/networkx/utils/union_find.py +0 -106
  364. package/runtime/skills/okstra-graphify/SKILL.md +0 -169
  365. package/src/commands/graphify.mjs +0 -32
@@ -1,879 +0,0 @@
1
- """
2
- Read graphs in GML format.
3
-
4
- "GML, the Graph Modelling Language, is our proposal for a portable
5
- file format for graphs. GML's key features are portability, simple
6
- syntax, extensibility and flexibility. A GML file consists of a
7
- hierarchical key-value lists. Graphs can be annotated with arbitrary
8
- data structures. The idea for a common file format was born at the
9
- GD'95; this proposal is the outcome of many discussions. GML is the
10
- standard file format in the Graphlet graph editor system. It has been
11
- overtaken and adapted by several other systems for drawing graphs."
12
-
13
- GML files are stored using a 7-bit ASCII encoding with any extended
14
- ASCII characters (iso8859-1) appearing as HTML character entities.
15
- You will need to give some thought into how the exported data should
16
- interact with different languages and even different Python versions.
17
- Re-importing from gml is also a concern.
18
-
19
- Without specifying a `stringizer`/`destringizer`, the code is capable of
20
- writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
21
- specification. For writing other data types, and for reading data other
22
- than `str` you need to explicitly supply a `stringizer`/`destringizer`.
23
-
24
- For additional documentation on the GML file format, please see the
25
- `GML website <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
26
-
27
- Several example graphs in GML format may be found on Mark Newman's
28
- `Network data page <http://www-personal.umich.edu/~mejn/netdata/>`_.
29
- """
30
-
31
- import html.entities as htmlentitydefs
32
- import re
33
- from ast import literal_eval
34
- from collections import defaultdict
35
- from enum import Enum
36
- from io import StringIO
37
- from typing import Any, NamedTuple
38
-
39
- import networkx as nx
40
- from networkx.exception import NetworkXError
41
- from networkx.utils import open_file
42
-
43
- __all__ = ["read_gml", "parse_gml", "generate_gml", "write_gml"]
44
-
45
-
46
- def escape(text):
47
- """Use XML character references to escape characters.
48
-
49
- Use XML character references for unprintable or non-ASCII
50
- characters, double quotes and ampersands in a string
51
- """
52
-
53
- def fixup(m):
54
- ch = m.group(0)
55
- return "&#" + str(ord(ch)) + ";"
56
-
57
- text = re.sub('[^ -~]|[&"]', fixup, text)
58
- return text if isinstance(text, str) else str(text)
59
-
60
-
61
- def unescape(text):
62
- """Replace XML character references with the referenced characters"""
63
-
64
- def fixup(m):
65
- text = m.group(0)
66
- if text[1] == "#":
67
- # Character reference
68
- if text[2] == "x":
69
- code = int(text[3:-1], 16)
70
- else:
71
- code = int(text[2:-1])
72
- else:
73
- # Named entity
74
- try:
75
- code = htmlentitydefs.name2codepoint[text[1:-1]]
76
- except KeyError:
77
- return text # leave unchanged
78
- try:
79
- return chr(code)
80
- except (ValueError, OverflowError):
81
- return text # leave unchanged
82
-
83
- return re.sub("&(?:[0-9A-Za-z]+|#(?:[0-9]+|x[0-9A-Fa-f]+));", fixup, text)
84
-
85
-
86
- def literal_destringizer(rep):
87
- """Convert a Python literal to the value it represents.
88
-
89
- Parameters
90
- ----------
91
- rep : string
92
- A Python literal.
93
-
94
- Returns
95
- -------
96
- value : object
97
- The value of the Python literal.
98
-
99
- Raises
100
- ------
101
- ValueError
102
- If `rep` is not a Python literal.
103
- """
104
- if isinstance(rep, str):
105
- orig_rep = rep
106
- try:
107
- return literal_eval(rep)
108
- except SyntaxError as err:
109
- raise ValueError(f"{orig_rep!r} is not a valid Python literal") from err
110
- else:
111
- raise ValueError(f"{rep!r} is not a string")
112
-
113
-
114
- @open_file(0, mode="rb")
115
- @nx._dispatchable(graphs=None, returns_graph=True)
116
- def read_gml(path, label="label", destringizer=None):
117
- """Read graph in GML format from `path`.
118
-
119
- Parameters
120
- ----------
121
- path : file or string
122
- Filename or file handle to read.
123
- Filenames ending in .gz or .bz2 will be decompressed.
124
-
125
- label : string, optional
126
- If not None, the parsed nodes will be renamed according to node
127
- attributes indicated by `label`. Default value: 'label'.
128
-
129
- destringizer : callable, optional
130
- A `destringizer` that recovers values stored as strings in GML. If it
131
- cannot convert a string to a value, a `ValueError` is raised. Default
132
- value : None.
133
-
134
- Returns
135
- -------
136
- G : NetworkX graph
137
- The parsed graph.
138
-
139
- Raises
140
- ------
141
- NetworkXError
142
- If the input cannot be parsed.
143
-
144
- See Also
145
- --------
146
- write_gml, parse_gml
147
- literal_destringizer
148
-
149
- Notes
150
- -----
151
- GML files are stored using a 7-bit ASCII encoding with any extended
152
- ASCII characters (iso8859-1) appearing as HTML character entities.
153
- Without specifying a `stringizer`/`destringizer`, the code is capable of
154
- writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
155
- specification. For writing other data types, and for reading data other
156
- than `str` you need to explicitly supply a `stringizer`/`destringizer`.
157
-
158
- For additional documentation on the GML file format, please see the
159
- `GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
160
-
161
- See the module docstring :mod:`networkx.readwrite.gml` for more details.
162
-
163
- Examples
164
- --------
165
- >>> G = nx.path_graph(4)
166
- >>> nx.write_gml(G, "test_path4.gml")
167
-
168
- GML values are interpreted as strings by default:
169
-
170
- >>> H = nx.read_gml("test_path4.gml")
171
- >>> H.nodes
172
- NodeView(('0', '1', '2', '3'))
173
-
174
- When a `destringizer` is provided, GML values are converted to the provided type.
175
- For example, integer nodes can be recovered as shown below:
176
-
177
- >>> J = nx.read_gml("test_path4.gml", destringizer=int)
178
- >>> J.nodes
179
- NodeView((0, 1, 2, 3))
180
-
181
- """
182
-
183
- def filter_lines(lines):
184
- for line in lines:
185
- try:
186
- line = line.decode("ascii")
187
- except UnicodeDecodeError as err:
188
- raise NetworkXError("input is not ASCII-encoded") from err
189
- if not isinstance(line, str):
190
- lines = str(lines)
191
- if line and line[-1] == "\n":
192
- line = line[:-1]
193
- yield line
194
-
195
- G = parse_gml_lines(filter_lines(path), label, destringizer)
196
- return G
197
-
198
-
199
- @nx._dispatchable(graphs=None, returns_graph=True)
200
- def parse_gml(lines, label="label", destringizer=None):
201
- """Parse GML graph from a string or iterable.
202
-
203
- Parameters
204
- ----------
205
- lines : string or iterable of strings
206
- Data in GML format.
207
-
208
- label : string, optional
209
- If not None, the parsed nodes will be renamed according to node
210
- attributes indicated by `label`. Default value: 'label'.
211
-
212
- destringizer : callable, optional
213
- A `destringizer` that recovers values stored as strings in GML. If it
214
- cannot convert a string to a value, a `ValueError` is raised. Default
215
- value : None.
216
-
217
- Returns
218
- -------
219
- G : NetworkX graph
220
- The parsed graph.
221
-
222
- Raises
223
- ------
224
- NetworkXError
225
- If the input cannot be parsed.
226
-
227
- See Also
228
- --------
229
- write_gml, read_gml
230
-
231
- Notes
232
- -----
233
- This stores nested GML attributes as dictionaries in the NetworkX graph,
234
- node, and edge attribute structures.
235
-
236
- GML files are stored using a 7-bit ASCII encoding with any extended
237
- ASCII characters (iso8859-1) appearing as HTML character entities.
238
- Without specifying a `stringizer`/`destringizer`, the code is capable of
239
- writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
240
- specification. For writing other data types, and for reading data other
241
- than `str` you need to explicitly supply a `stringizer`/`destringizer`.
242
-
243
- For additional documentation on the GML file format, please see the
244
- `GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
245
-
246
- See the module docstring :mod:`networkx.readwrite.gml` for more details.
247
- """
248
-
249
- def decode_line(line):
250
- if isinstance(line, bytes):
251
- try:
252
- line.decode("ascii")
253
- except UnicodeDecodeError as err:
254
- raise NetworkXError("input is not ASCII-encoded") from err
255
- if not isinstance(line, str):
256
- line = str(line)
257
- return line
258
-
259
- def filter_lines(lines):
260
- if isinstance(lines, str):
261
- lines = decode_line(lines)
262
- lines = lines.splitlines()
263
- yield from lines
264
- else:
265
- for line in lines:
266
- line = decode_line(line)
267
- if line and line[-1] == "\n":
268
- line = line[:-1]
269
- if line.find("\n") != -1:
270
- raise NetworkXError("input line contains newline")
271
- yield line
272
-
273
- G = parse_gml_lines(filter_lines(lines), label, destringizer)
274
- return G
275
-
276
-
277
- class Pattern(Enum):
278
- """encodes the index of each token-matching pattern in `tokenize`."""
279
-
280
- KEYS = 0
281
- REALS = 1
282
- INTS = 2
283
- STRINGS = 3
284
- DICT_START = 4
285
- DICT_END = 5
286
- COMMENT_WHITESPACE = 6
287
-
288
-
289
- class Token(NamedTuple):
290
- category: Pattern
291
- value: Any
292
- line: int
293
- position: int
294
-
295
-
296
- LIST_START_VALUE = "_networkx_list_start"
297
-
298
-
299
- def parse_gml_lines(lines, label, destringizer):
300
- """Parse GML `lines` into a graph."""
301
-
302
- def tokenize():
303
- patterns = [
304
- r"[A-Za-z][0-9A-Za-z_]*\b", # keys
305
- # reals
306
- r"[+-]?(?:[0-9]*\.[0-9]+|[0-9]+\.[0-9]*|INF)(?:[Ee][+-]?[0-9]+)?",
307
- r"[+-]?[0-9]+", # ints
308
- r'".*?"', # strings
309
- r"\[", # dict start
310
- r"\]", # dict end
311
- r"#.*$|\s+", # comments and whitespaces
312
- ]
313
- tokens = re.compile("|".join(f"({pattern})" for pattern in patterns))
314
- lineno = 0
315
- multilines = [] # entries spread across multiple lines
316
- for line in lines:
317
- pos = 0
318
-
319
- # deal with entries spread across multiple lines
320
- #
321
- # should we actually have to deal with escaped "s then do it here
322
- if multilines:
323
- multilines.append(line.strip())
324
- if line[-1] == '"': # closing multiline entry
325
- # multiline entries will be joined by space. cannot
326
- # reintroduce newlines as this will break the tokenizer
327
- line = " ".join(multilines)
328
- multilines = []
329
- else: # continued multiline entry
330
- lineno += 1
331
- continue
332
- else:
333
- if line.count('"') == 1: # opening multiline entry
334
- if line.strip()[0] != '"' and line.strip()[-1] != '"':
335
- # since we expect something like key "value", the " should not be found at ends
336
- # otherwise tokenizer will pick up the formatting mistake.
337
- multilines = [line.rstrip()]
338
- lineno += 1
339
- continue
340
-
341
- length = len(line)
342
-
343
- while pos < length:
344
- match = tokens.match(line, pos)
345
- if match is None:
346
- m = f"cannot tokenize {line[pos:]} at ({lineno + 1}, {pos + 1})"
347
- raise NetworkXError(m)
348
- for i in range(len(patterns)):
349
- group = match.group(i + 1)
350
- if group is not None:
351
- if i == 0: # keys
352
- value = group.rstrip()
353
- elif i == 1: # reals
354
- value = float(group)
355
- elif i == 2: # ints
356
- value = int(group)
357
- else:
358
- value = group
359
- if i != 6: # comments and whitespaces
360
- yield Token(Pattern(i), value, lineno + 1, pos + 1)
361
- pos += len(group)
362
- break
363
- lineno += 1
364
- yield Token(None, None, lineno + 1, 1) # EOF
365
-
366
- def unexpected(curr_token, expected):
367
- category, value, lineno, pos = curr_token
368
- value = repr(value) if value is not None else "EOF"
369
- raise NetworkXError(f"expected {expected}, found {value} at ({lineno}, {pos})")
370
-
371
- def consume(curr_token, category, expected):
372
- if curr_token.category == category:
373
- return next(tokens)
374
- unexpected(curr_token, expected)
375
-
376
- def parse_kv(curr_token):
377
- dct = defaultdict(list)
378
- while curr_token.category == Pattern.KEYS:
379
- key = curr_token.value
380
- curr_token = next(tokens)
381
- category = curr_token.category
382
- if category == Pattern.REALS or category == Pattern.INTS:
383
- value = curr_token.value
384
- curr_token = next(tokens)
385
- elif category == Pattern.STRINGS:
386
- value = unescape(curr_token.value[1:-1])
387
- if destringizer:
388
- try:
389
- value = destringizer(value)
390
- except ValueError:
391
- pass
392
- # Special handling for empty lists and tuples
393
- if value == "()":
394
- value = ()
395
- if value == "[]":
396
- value = []
397
- curr_token = next(tokens)
398
- elif category == Pattern.DICT_START:
399
- curr_token, value = parse_dict(curr_token)
400
- else:
401
- # Allow for string convertible id and label values
402
- if key in ("id", "label", "source", "target"):
403
- try:
404
- # String convert the token value
405
- value = unescape(str(curr_token.value))
406
- if destringizer:
407
- try:
408
- value = destringizer(value)
409
- except ValueError:
410
- pass
411
- curr_token = next(tokens)
412
- except Exception:
413
- msg = (
414
- "an int, float, string, '[' or string"
415
- + " convertible ASCII value for node id or label"
416
- )
417
- unexpected(curr_token, msg)
418
- # Special handling for nan and infinity. Since the gml language
419
- # defines unquoted strings as keys, the numeric and string branches
420
- # are skipped and we end up in this special branch, so we need to
421
- # convert the current token value to a float for NAN and plain INF.
422
- # +/-INF are handled in the pattern for 'reals' in tokenize(). This
423
- # allows labels and values to be nan or infinity, but not keys.
424
- elif curr_token.value in {"NAN", "INF"}:
425
- value = float(curr_token.value)
426
- curr_token = next(tokens)
427
- else: # Otherwise error out
428
- unexpected(curr_token, "an int, float, string or '['")
429
- dct[key].append(value)
430
-
431
- def clean_dict_value(value):
432
- if not isinstance(value, list):
433
- return value
434
- if len(value) == 1:
435
- return value[0]
436
- if value[0] == LIST_START_VALUE:
437
- return value[1:]
438
- return value
439
-
440
- dct = {key: clean_dict_value(value) for key, value in dct.items()}
441
- return curr_token, dct
442
-
443
- def parse_dict(curr_token):
444
- # dict start
445
- curr_token = consume(curr_token, Pattern.DICT_START, "'['")
446
- # dict contents
447
- curr_token, dct = parse_kv(curr_token)
448
- # dict end
449
- curr_token = consume(curr_token, Pattern.DICT_END, "']'")
450
- return curr_token, dct
451
-
452
- def parse_graph():
453
- curr_token, dct = parse_kv(next(tokens))
454
- if curr_token.category is not None: # EOF
455
- unexpected(curr_token, "EOF")
456
- if "graph" not in dct:
457
- raise NetworkXError("input contains no graph")
458
- graph = dct["graph"]
459
- if isinstance(graph, list):
460
- raise NetworkXError("input contains more than one graph")
461
- return graph
462
-
463
- tokens = tokenize()
464
- graph = parse_graph()
465
-
466
- directed = graph.pop("directed", False)
467
- multigraph = graph.pop("multigraph", False)
468
- if not multigraph:
469
- G = nx.DiGraph() if directed else nx.Graph()
470
- else:
471
- G = nx.MultiDiGraph() if directed else nx.MultiGraph()
472
- graph_attr = {k: v for k, v in graph.items() if k not in ("node", "edge")}
473
- G.graph.update(graph_attr)
474
-
475
- def pop_attr(dct, category, attr, i):
476
- try:
477
- return dct.pop(attr)
478
- except KeyError as err:
479
- raise NetworkXError(f"{category} #{i} has no {attr!r} attribute") from err
480
-
481
- nodes = graph.get("node", [])
482
- mapping = {}
483
- node_labels = set()
484
- for i, node in enumerate(nodes if isinstance(nodes, list) else [nodes]):
485
- id = pop_attr(node, "node", "id", i)
486
- if id in G:
487
- raise NetworkXError(f"node id {id!r} is duplicated")
488
- if label is not None and label != "id":
489
- node_label = pop_attr(node, "node", label, i)
490
- if node_label in node_labels:
491
- raise NetworkXError(f"node label {node_label!r} is duplicated")
492
- node_labels.add(node_label)
493
- mapping[id] = node_label
494
- G.add_node(id, **node)
495
-
496
- edges = graph.get("edge", [])
497
- for i, edge in enumerate(edges if isinstance(edges, list) else [edges]):
498
- source = pop_attr(edge, "edge", "source", i)
499
- target = pop_attr(edge, "edge", "target", i)
500
- if source not in G:
501
- raise NetworkXError(f"edge #{i} has undefined source {source!r}")
502
- if target not in G:
503
- raise NetworkXError(f"edge #{i} has undefined target {target!r}")
504
- if not multigraph:
505
- if not G.has_edge(source, target):
506
- G.add_edge(source, target, **edge)
507
- else:
508
- arrow = "->" if directed else "--"
509
- msg = f"edge #{i} ({source!r}{arrow}{target!r}) is duplicated"
510
- raise nx.NetworkXError(msg)
511
- else:
512
- key = edge.pop("key", None)
513
- if key is not None and G.has_edge(source, target, key):
514
- arrow = "->" if directed else "--"
515
- msg = f"edge #{i} ({source!r}{arrow}{target!r}, {key!r})"
516
- msg2 = 'Hint: If multigraph add "multigraph 1" to file header.'
517
- raise nx.NetworkXError(msg + " is duplicated\n" + msg2)
518
- G.add_edge(source, target, key, **edge)
519
-
520
- if label is not None and label != "id":
521
- G = nx.relabel_nodes(G, mapping)
522
- return G
523
-
524
-
525
- def literal_stringizer(value):
526
- """Convert a `value` to a Python literal in GML representation.
527
-
528
- Parameters
529
- ----------
530
- value : object
531
- The `value` to be converted to GML representation.
532
-
533
- Returns
534
- -------
535
- rep : string
536
- A double-quoted Python literal representing value. Unprintable
537
- characters are replaced by XML character references.
538
-
539
- Raises
540
- ------
541
- ValueError
542
- If `value` cannot be converted to GML.
543
-
544
- Notes
545
- -----
546
- The original value can be recovered using the
547
- :func:`networkx.readwrite.gml.literal_destringizer` function.
548
- """
549
-
550
- def stringize(value):
551
- if isinstance(value, int | bool) or value is None:
552
- if value is True: # GML uses 1/0 for boolean values.
553
- buf.write(str(1))
554
- elif value is False:
555
- buf.write(str(0))
556
- else:
557
- buf.write(str(value))
558
- elif isinstance(value, str):
559
- text = repr(value)
560
- if text[0] != "u":
561
- try:
562
- value.encode("latin1")
563
- except UnicodeEncodeError:
564
- text = "u" + text
565
- buf.write(text)
566
- elif isinstance(value, float | complex | str | bytes):
567
- buf.write(repr(value))
568
- elif isinstance(value, list):
569
- buf.write("[")
570
- first = True
571
- for item in value:
572
- if not first:
573
- buf.write(",")
574
- else:
575
- first = False
576
- stringize(item)
577
- buf.write("]")
578
- elif isinstance(value, tuple):
579
- if len(value) > 1:
580
- buf.write("(")
581
- first = True
582
- for item in value:
583
- if not first:
584
- buf.write(",")
585
- else:
586
- first = False
587
- stringize(item)
588
- buf.write(")")
589
- elif value:
590
- buf.write("(")
591
- stringize(value[0])
592
- buf.write(",)")
593
- else:
594
- buf.write("()")
595
- elif isinstance(value, dict):
596
- buf.write("{")
597
- first = True
598
- for key, value in value.items():
599
- if not first:
600
- buf.write(",")
601
- else:
602
- first = False
603
- stringize(key)
604
- buf.write(":")
605
- stringize(value)
606
- buf.write("}")
607
- elif isinstance(value, set):
608
- buf.write("{")
609
- first = True
610
- for item in value:
611
- if not first:
612
- buf.write(",")
613
- else:
614
- first = False
615
- stringize(item)
616
- buf.write("}")
617
- else:
618
- msg = f"{value!r} cannot be converted into a Python literal"
619
- raise ValueError(msg)
620
-
621
- buf = StringIO()
622
- stringize(value)
623
- return buf.getvalue()
624
-
625
-
626
- def generate_gml(G, stringizer=None):
627
- r"""Generate a single entry of the graph `G` in GML format.
628
-
629
- Parameters
630
- ----------
631
- G : NetworkX graph
632
- The graph to be converted to GML.
633
-
634
- stringizer : callable, optional
635
- A `stringizer` which converts non-int/non-float/non-dict values into
636
- strings. If it cannot convert a value into a string, it should raise a
637
- `ValueError` to indicate that. Default value: None.
638
-
639
- Returns
640
- -------
641
- lines: generator of strings
642
- Lines of GML data. Newlines are not appended.
643
-
644
- Raises
645
- ------
646
- NetworkXError
647
- If `stringizer` cannot convert a value into a string, or the value to
648
- convert is not a string while `stringizer` is None.
649
-
650
- See Also
651
- --------
652
- literal_stringizer
653
-
654
- Notes
655
- -----
656
- Graph attributes named 'directed', 'multigraph', 'node' or
657
- 'edge', node attributes named 'id' or 'label', edge attributes
658
- named 'source' or 'target' (or 'key' if `G` is a multigraph)
659
- are ignored because these attribute names are used to encode the graph
660
- structure.
661
-
662
- GML files are stored using a 7-bit ASCII encoding with any extended
663
- ASCII characters (iso8859-1) appearing as HTML character entities.
664
- Without specifying a `stringizer`/`destringizer`, the code is capable of
665
- writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
666
- specification. For writing other data types, and for reading data other
667
- than `str` you need to explicitly supply a `stringizer`/`destringizer`.
668
-
669
- For additional documentation on the GML file format, please see the
670
- `GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
671
-
672
- See the module docstring :mod:`networkx.readwrite.gml` for more details.
673
-
674
- Examples
675
- --------
676
- >>> G = nx.Graph()
677
- >>> G.add_node("1")
678
- >>> print("\n".join(nx.generate_gml(G)))
679
- graph [
680
- node [
681
- id 0
682
- label "1"
683
- ]
684
- ]
685
- >>> G = nx.MultiGraph([("a", "b"), ("a", "b")])
686
- >>> print("\n".join(nx.generate_gml(G)))
687
- graph [
688
- multigraph 1
689
- node [
690
- id 0
691
- label "a"
692
- ]
693
- node [
694
- id 1
695
- label "b"
696
- ]
697
- edge [
698
- source 0
699
- target 1
700
- key 0
701
- ]
702
- edge [
703
- source 0
704
- target 1
705
- key 1
706
- ]
707
- ]
708
- """
709
- valid_keys = re.compile("^[A-Za-z][0-9A-Za-z_]*$")
710
-
711
- def stringize(key, value, ignored_keys, indent, in_list=False):
712
- if not isinstance(key, str):
713
- raise NetworkXError(f"{key!r} is not a string")
714
- if not valid_keys.match(key):
715
- raise NetworkXError(f"{key!r} is not a valid key")
716
- if not isinstance(key, str):
717
- key = str(key)
718
- if key not in ignored_keys:
719
- if isinstance(value, int | bool):
720
- if key == "label":
721
- yield indent + key + ' "' + str(value) + '"'
722
- elif value is True:
723
- # python bool is an instance of int
724
- yield indent + key + " 1"
725
- elif value is False:
726
- yield indent + key + " 0"
727
- # GML only supports signed 32-bit integers
728
- elif value < -(2**31) or value >= 2**31:
729
- yield indent + key + ' "' + str(value) + '"'
730
- else:
731
- yield indent + key + " " + str(value)
732
- elif isinstance(value, float):
733
- text = repr(value).upper()
734
- # GML matches INF to keys, so prepend + to INF. Use repr(float(*))
735
- # instead of string literal to future proof against changes to repr.
736
- if text == repr(float("inf")).upper():
737
- text = "+" + text
738
- else:
739
- # GML requires that a real literal contain a decimal point, but
740
- # repr may not output a decimal point when the mantissa is
741
- # integral and hence needs fixing.
742
- epos = text.rfind("E")
743
- if epos != -1 and text.find(".", 0, epos) == -1:
744
- text = text[:epos] + "." + text[epos:]
745
- if key == "label":
746
- yield indent + key + ' "' + text + '"'
747
- else:
748
- yield indent + key + " " + text
749
- elif isinstance(value, dict):
750
- yield indent + key + " ["
751
- next_indent = indent + " "
752
- for key, value in value.items():
753
- yield from stringize(key, value, (), next_indent)
754
- yield indent + "]"
755
- elif isinstance(value, tuple) and key == "label":
756
- yield indent + key + f' "({",".join(repr(v) for v in value)})"'
757
- elif isinstance(value, list | tuple) and key != "label" and not in_list:
758
- if len(value) == 0:
759
- yield indent + key + " " + f'"{value!r}"'
760
- if len(value) == 1:
761
- yield indent + key + " " + f'"{LIST_START_VALUE}"'
762
- for val in value:
763
- yield from stringize(key, val, (), indent, True)
764
- else:
765
- if stringizer:
766
- try:
767
- value = stringizer(value)
768
- except ValueError as err:
769
- raise NetworkXError(
770
- f"{value!r} cannot be converted into a string"
771
- ) from err
772
- if not isinstance(value, str):
773
- raise NetworkXError(f"{value!r} is not a string")
774
- yield indent + key + ' "' + escape(value) + '"'
775
-
776
- multigraph = G.is_multigraph()
777
- yield "graph ["
778
-
779
- # Output graph attributes
780
- if G.is_directed():
781
- yield " directed 1"
782
- if multigraph:
783
- yield " multigraph 1"
784
- ignored_keys = {"directed", "multigraph", "node", "edge"}
785
- for attr, value in G.graph.items():
786
- yield from stringize(attr, value, ignored_keys, " ")
787
-
788
- # Output node data
789
- node_id = dict(zip(G, range(len(G))))
790
- ignored_keys = {"id", "label"}
791
- for node, attrs in G.nodes.items():
792
- yield " node ["
793
- yield " id " + str(node_id[node])
794
- yield from stringize("label", node, (), " ")
795
- for attr, value in attrs.items():
796
- yield from stringize(attr, value, ignored_keys, " ")
797
- yield " ]"
798
-
799
- # Output edge data
800
- ignored_keys = {"source", "target"}
801
- kwargs = {"data": True}
802
- if multigraph:
803
- ignored_keys.add("key")
804
- kwargs["keys"] = True
805
- for e in G.edges(**kwargs):
806
- yield " edge ["
807
- yield " source " + str(node_id[e[0]])
808
- yield " target " + str(node_id[e[1]])
809
- if multigraph:
810
- yield from stringize("key", e[2], (), " ")
811
- for attr, value in e[-1].items():
812
- yield from stringize(attr, value, ignored_keys, " ")
813
- yield " ]"
814
- yield "]"
815
-
816
-
817
- @open_file(1, mode="wb")
818
- def write_gml(G, path, stringizer=None):
819
- """Write a graph `G` in GML format to the file or file handle `path`.
820
-
821
- Parameters
822
- ----------
823
- G : NetworkX graph
824
- The graph to be converted to GML.
825
-
826
- path : string or file
827
- Filename or file handle to write to.
828
- Filenames ending in .gz or .bz2 will be compressed.
829
-
830
- stringizer : callable, optional
831
- A `stringizer` which converts non-int/non-float/non-dict values into
832
- strings. If it cannot convert a value into a string, it should raise a
833
- `ValueError` to indicate that. Default value: None.
834
-
835
- Raises
836
- ------
837
- NetworkXError
838
- If `stringizer` cannot convert a value into a string, or the value to
839
- convert is not a string while `stringizer` is None.
840
-
841
- See Also
842
- --------
843
- read_gml, generate_gml
844
- literal_stringizer
845
-
846
- Notes
847
- -----
848
- Graph attributes named 'directed', 'multigraph', 'node' or
849
- 'edge', node attributes named 'id' or 'label', edge attributes
850
- named 'source' or 'target' (or 'key' if `G` is a multigraph)
851
- are ignored because these attribute names are used to encode the graph
852
- structure.
853
-
854
- GML files are stored using a 7-bit ASCII encoding with any extended
855
- ASCII characters (iso8859-1) appearing as HTML character entities.
856
- Without specifying a `stringizer`/`destringizer`, the code is capable of
857
- writing `int`/`float`/`str`/`dict`/`list` data as required by the GML
858
- specification. For writing other data types, and for reading data other
859
- than `str` you need to explicitly supply a `stringizer`/`destringizer`.
860
-
861
- Note that while we allow non-standard GML to be read from a file, we make
862
- sure to write GML format. In particular, underscores are not allowed in
863
- attribute names.
864
- For additional documentation on the GML file format, please see the
865
- `GML url <https://web.archive.org/web/20190207140002/http://www.fim.uni-passau.de/index.php?id=17297&L=1>`_.
866
-
867
- See the module docstring :mod:`networkx.readwrite.gml` for more details.
868
-
869
- Examples
870
- --------
871
- >>> G = nx.path_graph(5)
872
- >>> nx.write_gml(G, "test_path5.gml")
873
-
874
- Filenames ending in .gz or .bz2 will be compressed.
875
-
876
- >>> nx.write_gml(G, "test_path5.gml.gz")
877
- """
878
- for line in generate_gml(G, stringizer):
879
- path.write((line + "\n").encode("ascii"))