okstra 0.130.4 → 0.131.1

package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py

@@ -1,489 +0,0 @@
-"""
-**********
-Edge Lists
-**********
-Read and write NetworkX graphs as edge lists.
-
-The multi-line adjacency list format is useful for graphs with nodes
-that can be meaningfully represented as strings.  With the edgelist
-format simple edge data can be stored but node or graph data is not.
-There is no way of representing isolated nodes unless the node has a
-self-loop edge.
-
-Format
-------
-You can read or write three formats of edge lists with these functions.
-
-Node pairs with no data::
-
- 1 2
-
-Python dictionary as data::
-
- 1 2 {'weight':7, 'color':'green'}
-
-Arbitrary data::
-
- 1 2 7 green
-"""
-
-__all__ = [
-    "generate_edgelist",
-    "write_edgelist",
-    "parse_edgelist",
-    "read_edgelist",
-    "read_weighted_edgelist",
-    "write_weighted_edgelist",
-]
-
-import networkx as nx
-from networkx.utils import open_file
-
-
-def generate_edgelist(G, delimiter=" ", data=True):
-    """Generate a single line of the graph G in edge list format.
-
-    Parameters
-    ----------
-    G : NetworkX graph
-
-    delimiter : string, optional
-       Separator for node labels
-
-    data : bool or list of keys
-       If False generate no edge data.  If True use a dictionary
-       representation of edge data.  If a list of keys use a list of data
-       values corresponding to the keys.
-
-    Returns
-    -------
-    lines : string
-        Lines of data in adjlist format.
-
-    Examples
-    --------
-    >>> G = nx.lollipop_graph(4, 3)
-    >>> G[1][2]["weight"] = 3
-    >>> G[3][4]["capacity"] = 12
-    >>> for line in nx.generate_edgelist(G, data=False):
-    ...     print(line)
-    0 1
-    0 2
-    0 3
-    1 2
-    1 3
-    2 3
-    3 4
-    4 5
-    5 6
-
-    >>> for line in nx.generate_edgelist(G):
-    ...     print(line)
-    0 1 {}
-    0 2 {}
-    0 3 {}
-    1 2 {'weight': 3}
-    1 3 {}
-    2 3 {}
-    3 4 {'capacity': 12}
-    4 5 {}
-    5 6 {}
-
-    >>> for line in nx.generate_edgelist(G, data=["weight"]):
-    ...     print(line)
-    0 1
-    0 2
-    0 3
-    1 2 3
-    1 3
-    2 3
-    3 4
-    4 5
-    5 6
-
-    See Also
-    --------
-    write_adjlist, read_adjlist
-    """
-    if data is True:
-        for u, v, d in G.edges(data=True):
-            e = u, v, dict(d)
-            yield delimiter.join(map(str, e))
-    elif data is False:
-        for u, v in G.edges(data=False):
-            e = u, v
-            yield delimiter.join(map(str, e))
-    else:
-        for u, v, d in G.edges(data=True):
-            e = [u, v]
-            try:
-                e.extend(d[k] for k in data)
-            except KeyError:
-                pass  # missing data for this edge, should warn?
-            yield delimiter.join(map(str, e))
-
-
-@open_file(1, mode="wb")
-def write_edgelist(G, path, comments="#", delimiter=" ", data=True, encoding="utf-8"):
-    """Write graph as a list of edges.
-
-    Parameters
-    ----------
-    G : graph
-       A NetworkX graph
-    path : file or string
-       File or filename to write. If a file is provided, it must be
-       opened in 'wb' mode. Filenames ending in .gz or .bz2 will be compressed.
-    comments : string, optional
-       The character used to indicate the start of a comment
-    delimiter : string, optional
-       The string used to separate values.  The default is whitespace.
-    data : bool or list, optional
-       If False write no edge data.
-       If True write a string representation of the edge data dictionary..
-       If a list (or other iterable) is provided, write the  keys specified
-       in the list.
-    encoding: string, optional
-       Specify which encoding to use when writing file.
-
-    Examples
-    --------
-    >>> G = nx.path_graph(4)
-    >>> nx.write_edgelist(G, "test.edgelist")
-    >>> G = nx.path_graph(4)
-    >>> fh = open("test.edgelist", "wb")
-    >>> nx.write_edgelist(G, fh)
-    >>> nx.write_edgelist(G, "test.edgelist.gz")
-    >>> nx.write_edgelist(G, "test.edgelist_nodata.gz", data=False)
-
-    >>> G = nx.Graph()
-    >>> G.add_edge(1, 2, weight=7, color="red")
-    >>> nx.write_edgelist(G, "test.edgelist_bigger_nodata", data=False)
-    >>> nx.write_edgelist(G, "test.edgelist_color", data=["color"])
-    >>> nx.write_edgelist(G, "test.edgelist_color_weight", data=["color", "weight"])
-
-    See Also
-    --------
-    read_edgelist
-    write_weighted_edgelist
-    """
-
-    for line in generate_edgelist(G, delimiter, data):
-        line += "\n"
-        path.write(line.encode(encoding))
-
-
-@nx._dispatchable(graphs=None, returns_graph=True)
-def parse_edgelist(
-    lines, comments="#", delimiter=None, create_using=None, nodetype=None, data=True
-):
-    """Parse lines of an edge list representation of a graph.
-
-    Parameters
-    ----------
-    lines : list or iterator of strings
-        Input data in edgelist format
-    comments : string, optional
-       Marker for comment lines. Default is `'#'`. To specify that no character
-       should be treated as a comment, use ``comments=None``.
-    delimiter : string, optional
-       Separator for node labels. Default is `None`, meaning any whitespace.
-    create_using : NetworkX graph constructor, optional (default=nx.Graph)
-       Graph type to create. If graph instance, then cleared before populated.
-    nodetype : Python type, optional
-       Convert nodes to this type. Default is `None`, meaning no conversion is
-       performed.
-    data : bool or list of (label,type) tuples
-       If `False` generate no edge data or if `True` use a dictionary
-       representation of edge data or a list tuples specifying dictionary
-       key names and types for edge data.
-
-    Returns
-    -------
-    G: NetworkX Graph
-        The graph corresponding to lines
-
-    Examples
-    --------
-    Edgelist with no data:
-
-    >>> lines = ["1 2", "2 3", "3 4"]
-    >>> G = nx.parse_edgelist(lines, nodetype=int)
-    >>> list(G)
-    [1, 2, 3, 4]
-    >>> list(G.edges())
-    [(1, 2), (2, 3), (3, 4)]
-
-    Edgelist with data in Python dictionary representation:
-
-    >>> lines = ["1 2 {'weight': 3}", "2 3 {'weight': 27}", "3 4 {'weight': 3.0}"]
-    >>> G = nx.parse_edgelist(lines, nodetype=int)
-    >>> list(G)
-    [1, 2, 3, 4]
-    >>> list(G.edges(data=True))
-    [(1, 2, {'weight': 3}), (2, 3, {'weight': 27}), (3, 4, {'weight': 3.0})]
-
-    Edgelist with data in a list:
-
-    >>> lines = ["1 2 3", "2 3 27", "3 4 3.0"]
-    >>> G = nx.parse_edgelist(lines, nodetype=int, data=(("weight", float),))
-    >>> list(G)
-    [1, 2, 3, 4]
-    >>> list(G.edges(data=True))
-    [(1, 2, {'weight': 3.0}), (2, 3, {'weight': 27.0}), (3, 4, {'weight': 3.0})]
-
-    See Also
-    --------
-    read_weighted_edgelist
-    """
-    from ast import literal_eval
-
-    G = nx.empty_graph(0, create_using)
-    for line in lines:
-        if comments is not None:
-            p = line.find(comments)
-            if p >= 0:
-                line = line[:p]
-            if not line:
-                continue
-        # split line, should have 2 or more
-        s = line.rstrip("\n").split(delimiter)
-        if len(s) < 2:
-            continue
-        u = s.pop(0)
-        v = s.pop(0)
-        d = s
-        if nodetype is not None:
-            try:
-                u = nodetype(u)
-                v = nodetype(v)
-            except Exception as err:
-                raise TypeError(
-                    f"Failed to convert nodes {u},{v} to type {nodetype}."
-                ) from err
-
-        if len(d) == 0 or data is False:
-            # no data or data type specified
-            edgedata = {}
-        elif data is True:
-            # no edge types specified
-            try:  # try to evaluate as dictionary
-                if delimiter == ",":
-                    edgedata_str = ",".join(d)
-                else:
-                    edgedata_str = " ".join(d)
-                edgedata = dict(literal_eval(edgedata_str.strip()))
-            except Exception as err:
-                raise TypeError(
-                    f"Failed to convert edge data ({d}) to dictionary."
-                ) from err
-        else:
-            # convert edge data to dictionary with specified keys and type
-            if len(d) != len(data):
-                raise IndexError(
-                    f"Edge data {d} and data_keys {data} are not the same length"
-                )
-            edgedata = {}
-            for (edge_key, edge_type), edge_value in zip(data, d):
-                try:
-                    edge_value = edge_type(edge_value)
-                except Exception as err:
-                    raise TypeError(
-                        f"Failed to convert {edge_key} data {edge_value} "
-                        f"to type {edge_type}."
-                    ) from err
-                edgedata.update({edge_key: edge_value})
-        G.add_edge(u, v, **edgedata)
-    return G
-
-
-@open_file(0, mode="rb")
-@nx._dispatchable(graphs=None, returns_graph=True)
-def read_edgelist(
-    path,
-    comments="#",
-    delimiter=None,
-    create_using=None,
-    nodetype=None,
-    data=True,
-    edgetype=None,
-    encoding="utf-8",
-):
-    """Read a graph from a list of edges.
-
-    Parameters
-    ----------
-    path : file or string
-       File or filename to read. If a file is provided, it must be
-       opened in 'rb' mode.
-       Filenames ending in .gz or .bz2 will be decompressed.
-    comments : string, optional
-       The character used to indicate the start of a comment. To specify that
-       no character should be treated as a comment, use ``comments=None``.
-    delimiter : string, optional
-       The string used to separate values.  The default is whitespace.
-    create_using : NetworkX graph constructor, optional (default=nx.Graph)
-       Graph type to create. If graph instance, then cleared before populated.
-    nodetype : int, float, str, Python type, optional
-       Convert node data from strings to specified type
-    data : bool or list of (label,type) tuples
-       Tuples specifying dictionary key names and types for edge data
-    edgetype : int, float, str, Python type, optional OBSOLETE
-       Convert edge data from strings to specified type and use as 'weight'
-    encoding: string, optional
-       Specify which encoding to use when reading file.
-
-    Returns
-    -------
-    G : graph
-       A networkx Graph or other type specified with create_using
-
-    Examples
-    --------
-    >>> nx.write_edgelist(nx.path_graph(4), "test.edgelist_P4")
-    >>> G = nx.read_edgelist("test.edgelist_P4")
-
-    >>> fh = open("test.edgelist_P4", "rb")
-    >>> G = nx.read_edgelist(fh)
-    >>> fh.close()
-
-    >>> G = nx.read_edgelist("test.edgelist_P4", nodetype=int)
-    >>> G = nx.read_edgelist("test.edgelist_P4", create_using=nx.DiGraph)
-
-    Edgelist with data in a list:
-
-    >>> textline = "1 2 3"
-    >>> fh = open("test.textline", "w")
-    >>> d = fh.write(textline)
-    >>> fh.close()
-    >>> G = nx.read_edgelist("test.textline", nodetype=int, data=(("weight", float),))
-    >>> list(G)
-    [1, 2]
-    >>> list(G.edges(data=True))
-    [(1, 2, {'weight': 3.0})]
-
-    See parse_edgelist() for more examples of formatting.
-
-    See Also
-    --------
-    parse_edgelist
-    write_edgelist
-
-    Notes
-    -----
-    Since nodes must be hashable, the function nodetype must return hashable
-    types (e.g. int, float, str, frozenset - or tuples of those, etc.)
-    """
-    lines = (line if isinstance(line, str) else line.decode(encoding) for line in path)
-    return parse_edgelist(
-        lines,
-        comments=comments,
-        delimiter=delimiter,
-        create_using=create_using,
-        nodetype=nodetype,
-        data=data,
-    )
-
-
-def write_weighted_edgelist(G, path, comments="#", delimiter=" ", encoding="utf-8"):
-    """Write graph G as a list of edges with numeric weights.
-
-    Parameters
-    ----------
-    G : graph
-       A NetworkX graph
-    path : file or string
-       File or filename to write. If a file is provided, it must be
-       opened in 'wb' mode.
-       Filenames ending in .gz or .bz2 will be compressed.
-    comments : string, optional
-       The character used to indicate the start of a comment
-    delimiter : string, optional
-       The string used to separate values.  The default is whitespace.
-    encoding: string, optional
-       Specify which encoding to use when writing file.
-
-    Examples
-    --------
-    >>> G = nx.Graph()
-    >>> G.add_edge(1, 2, weight=7)
-    >>> nx.write_weighted_edgelist(G, "test.weighted.edgelist")
-
-    See Also
-    --------
-    read_edgelist
-    write_edgelist
-    read_weighted_edgelist
-    """
-    write_edgelist(
-        G,
-        path,
-        comments=comments,
-        delimiter=delimiter,
-        data=("weight",),
-        encoding=encoding,
-    )
-
-
-@nx._dispatchable(graphs=None, returns_graph=True)
-def read_weighted_edgelist(
-    path,
-    comments="#",
-    delimiter=None,
-    create_using=None,
-    nodetype=None,
-    encoding="utf-8",
-):
-    """Read a graph as list of edges with numeric weights.
-
-    Parameters
-    ----------
-    path : file or string
-       File or filename to read. If a file is provided, it must be
-       opened in 'rb' mode.
-       Filenames ending in .gz or .bz2 will be decompressed.
-    comments : string, optional
-       The character used to indicate the start of a comment.
-    delimiter : string, optional
-       The string used to separate values.  The default is whitespace.
-    create_using : NetworkX graph constructor, optional (default=nx.Graph)
-       Graph type to create. If graph instance, then cleared before populated.
-    nodetype : int, float, str, Python type, optional
-       Convert node data from strings to specified type
-    encoding: string, optional
-       Specify which encoding to use when reading file.
-
-    Returns
-    -------
-    G : graph
-       A networkx Graph or other type specified with create_using
-
-    Notes
-    -----
-    Since nodes must be hashable, the function nodetype must return hashable
-    types (e.g. int, float, str, frozenset - or tuples of those, etc.)
-
-    Example edgelist file format.
-
-    With numeric edge data::
-
-     # read with
-     # >>> G=nx.read_weighted_edgelist(fh)
-     # source target data
-     a b 1
-     a c 3.14159
-     d e 42
-
-    See Also
-    --------
-    write_weighted_edgelist
-    """
-    return read_edgelist(
-        path,
-        comments=comments,
-        delimiter=delimiter,
-        create_using=create_using,
-        nodetype=nodetype,
-        data=(("weight", float),),
-        encoding=encoding,
-    )