okstra 0.130.4 → 0.131.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (365) hide show
  1. package/README.md +0 -1
  2. package/docs/architecture.md +2 -2
  3. package/docs/cli.md +1 -1
  4. package/docs/for-ai/README.md +0 -2
  5. package/docs/for-ai/skills/okstra-run.md +13 -2
  6. package/docs/for-ai/skills/okstra-setup.md +4 -1
  7. package/docs/project-structure-overview.md +5 -4
  8. package/docs/task-process/implementation-planning.md +13 -0
  9. package/docs/task-process/implementation.md +17 -2
  10. package/package.json +1 -1
  11. package/runtime/BUILD.json +2 -2
  12. package/runtime/agents/workers/report-writer-worker.md +7 -0
  13. package/runtime/bin/lib/okstra/usage.sh +4 -4
  14. package/runtime/prompts/lead/okstra-lead-contract.md +2 -2
  15. package/runtime/prompts/lead/plan-body-verification.md +26 -5
  16. package/runtime/prompts/lead/report-writer.md +6 -2
  17. package/runtime/prompts/profiles/_common-contract.md +2 -1
  18. package/runtime/prompts/profiles/_implementation-deliverable.md +6 -1
  19. package/runtime/prompts/profiles/_implementation-executor.md +2 -2
  20. package/runtime/prompts/profiles/_implementation-verifier.md +33 -10
  21. package/runtime/prompts/profiles/final-verification.md +21 -6
  22. package/runtime/prompts/profiles/implementation-planning.md +16 -4
  23. package/runtime/python/okstra_ctl/codex_dispatch.py +31 -0
  24. package/runtime/python/okstra_ctl/conformance.py +49 -11
  25. package/runtime/python/okstra_ctl/report_finalize.py +52 -1
  26. package/runtime/python/okstra_ctl/run.py +15 -3
  27. package/runtime/python/okstra_ctl/worker_prompt_contract.py +14 -6
  28. package/runtime/python/okstra_ctl/worker_prompt_policy.py +19 -1
  29. package/runtime/python/okstra_vendor/__init__.py +0 -44
  30. package/runtime/schemas/final-report-v1.0.schema.json +99 -5
  31. package/runtime/skills/okstra-run/SKILL.md +11 -4
  32. package/runtime/skills/okstra-setup/SKILL.md +3 -2
  33. package/runtime/skills/okstra-setup/references/project-config.md +16 -7
  34. package/runtime/templates/reports/final-report.template.md +15 -9
  35. package/runtime/templates/reports/i18n/en.json +1 -0
  36. package/runtime/templates/reports/i18n/ko.json +1 -0
  37. package/runtime/validators/lib/fixtures.sh +6 -0
  38. package/runtime/validators/validate-run.py +2019 -96
  39. package/src/cli-registry.mjs +0 -7
  40. package/src/commands/lifecycle/doctor.mjs +0 -9
  41. package/src/lib/skill-catalog.mjs +0 -1
  42. package/docs/for-ai/skills/okstra-graphify.md +0 -64
  43. package/runtime/python/okstra_ctl/graphify_cmd.py +0 -225
  44. package/runtime/python/okstra_vendor/graphify/.vendored-version +0 -1
  45. package/runtime/python/okstra_vendor/graphify/__init__.py +0 -28
  46. package/runtime/python/okstra_vendor/graphify/__main__.py +0 -1371
  47. package/runtime/python/okstra_vendor/graphify/analyze.py +0 -540
  48. package/runtime/python/okstra_vendor/graphify/benchmark.py +0 -129
  49. package/runtime/python/okstra_vendor/graphify/build.py +0 -107
  50. package/runtime/python/okstra_vendor/graphify/cache.py +0 -169
  51. package/runtime/python/okstra_vendor/graphify/cluster.py +0 -137
  52. package/runtime/python/okstra_vendor/graphify/detect.py +0 -510
  53. package/runtime/python/okstra_vendor/graphify/export.py +0 -1014
  54. package/runtime/python/okstra_vendor/graphify/extract.py +0 -3277
  55. package/runtime/python/okstra_vendor/graphify/hooks.py +0 -220
  56. package/runtime/python/okstra_vendor/graphify/ingest.py +0 -297
  57. package/runtime/python/okstra_vendor/graphify/manifest.py +0 -4
  58. package/runtime/python/okstra_vendor/graphify/report.py +0 -175
  59. package/runtime/python/okstra_vendor/graphify/security.py +0 -203
  60. package/runtime/python/okstra_vendor/graphify/serve.py +0 -373
  61. package/runtime/python/okstra_vendor/graphify/skill-aider.md +0 -1184
  62. package/runtime/python/okstra_vendor/graphify/skill-claw.md +0 -1184
  63. package/runtime/python/okstra_vendor/graphify/skill-codex.md +0 -1242
  64. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +0 -1268
  65. package/runtime/python/okstra_vendor/graphify/skill-droid.md +0 -1239
  66. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +0 -1183
  67. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +0 -1238
  68. package/runtime/python/okstra_vendor/graphify/skill-trae.md +0 -1208
  69. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +0 -253
  70. package/runtime/python/okstra_vendor/graphify/skill-windows.md +0 -1245
  71. package/runtime/python/okstra_vendor/graphify/skill.md +0 -1319
  72. package/runtime/python/okstra_vendor/graphify/transcribe.py +0 -182
  73. package/runtime/python/okstra_vendor/graphify/validate.py +0 -72
  74. package/runtime/python/okstra_vendor/graphify/watch.py +0 -188
  75. package/runtime/python/okstra_vendor/graphify/wiki.py +0 -214
  76. package/runtime/python/okstra_vendor/networkx/__init__.py +0 -62
  77. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +0 -134
  78. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +0 -26
  79. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +0 -259
  80. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +0 -71
  81. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +0 -412
  82. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +0 -396
  83. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +0 -150
  84. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +0 -149
  85. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +0 -369
  86. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +0 -44
  87. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +0 -143
  88. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +0 -53
  89. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +0 -265
  90. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +0 -1508
  91. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +0 -255
  92. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +0 -83
  93. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +0 -5
  94. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +0 -122
  95. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +0 -302
  96. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +0 -255
  97. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +0 -160
  98. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +0 -127
  99. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +0 -164
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +0 -88
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +0 -322
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +0 -290
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +0 -289
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +0 -57
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +0 -360
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +0 -105
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +0 -603
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +0 -316
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +0 -590
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +0 -232
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +0 -526
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +0 -112
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +0 -69
  114. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +0 -168
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +0 -205
  116. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +0 -164
  117. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +0 -20
  118. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +0 -591
  119. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +0 -236
  120. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +0 -282
  121. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +0 -364
  122. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +0 -227
  123. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +0 -96
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +0 -150
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +0 -107
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +0 -357
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +0 -130
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +0 -787
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +0 -88
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +0 -331
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +0 -150
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +0 -200
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +0 -128
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +0 -209
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +0 -141
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +0 -361
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +0 -181
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +0 -95
  139. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +0 -172
  140. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +0 -443
  141. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +0 -818
  142. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +0 -732
  143. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +0 -4
  144. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +0 -505
  145. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +0 -565
  146. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +0 -163
  147. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +0 -28
  148. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +0 -153
  149. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +0 -354
  150. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +0 -171
  151. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +0 -30
  152. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +0 -216
  153. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +0 -79
  154. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +0 -338
  155. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +0 -162
  156. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +0 -220
  157. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +0 -384
  158. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +0 -227
  159. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +0 -452
  160. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +0 -347
  161. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +0 -6
  162. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +0 -115
  163. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +0 -394
  164. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +0 -282
  165. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +0 -71
  166. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +0 -359
  167. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +0 -196
  168. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +0 -11
  169. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +0 -811
  170. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +0 -616
  171. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +0 -408
  172. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +0 -1270
  173. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +0 -592
  174. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +0 -220
  175. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +0 -235
  176. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +0 -152
  177. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +0 -88
  178. package/runtime/python/okstra_vendor/networkx/algorithms/core.py +0 -588
  179. package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +0 -142
  180. package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +0 -416
  181. package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +0 -1234
  182. package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +0 -677
  183. package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +0 -1392
  184. package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +0 -1095
  185. package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +0 -272
  186. package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +0 -142
  187. package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +0 -268
  188. package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +0 -167
  189. package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +0 -470
  190. package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +0 -11
  191. package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +0 -370
  192. package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +0 -407
  193. package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +0 -238
  194. package/runtime/python/okstra_vendor/networkx/algorithms/flow/edmondskarp.py +0 -241
  195. package/runtime/python/okstra_vendor/networkx/algorithms/flow/gomory_hu.py +0 -178
  196. package/runtime/python/okstra_vendor/networkx/algorithms/flow/maxflow.py +0 -611
  197. package/runtime/python/okstra_vendor/networkx/algorithms/flow/mincost.py +0 -356
  198. package/runtime/python/okstra_vendor/networkx/algorithms/flow/networksimplex.py +0 -662
  199. package/runtime/python/okstra_vendor/networkx/algorithms/flow/preflowpush.py +0 -425
  200. package/runtime/python/okstra_vendor/networkx/algorithms/flow/shortestaugmentingpath.py +0 -300
  201. package/runtime/python/okstra_vendor/networkx/algorithms/flow/utils.py +0 -194
  202. package/runtime/python/okstra_vendor/networkx/algorithms/graph_hashing.py +0 -435
  203. package/runtime/python/okstra_vendor/networkx/algorithms/graphical.py +0 -483
  204. package/runtime/python/okstra_vendor/networkx/algorithms/hierarchy.py +0 -57
  205. package/runtime/python/okstra_vendor/networkx/algorithms/hybrid.py +0 -196
  206. package/runtime/python/okstra_vendor/networkx/algorithms/isolate.py +0 -107
  207. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/__init__.py +0 -7
  208. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/ismags.py +0 -1306
  209. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorph.py +0 -336
  210. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/isomorphvf2.py +0 -1262
  211. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/matchhelpers.py +0 -352
  212. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/temporalisomorphvf2.py +0 -308
  213. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/tree_isomorphism.py +0 -264
  214. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2pp.py +0 -1102
  215. package/runtime/python/okstra_vendor/networkx/algorithms/isomorphism/vf2userfunc.py +0 -192
  216. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/__init__.py +0 -2
  217. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/hits_alg.py +0 -337
  218. package/runtime/python/okstra_vendor/networkx/algorithms/link_analysis/pagerank_alg.py +0 -498
  219. package/runtime/python/okstra_vendor/networkx/algorithms/link_prediction.py +0 -687
  220. package/runtime/python/okstra_vendor/networkx/algorithms/lowest_common_ancestors.py +0 -280
  221. package/runtime/python/okstra_vendor/networkx/algorithms/matching.py +0 -1148
  222. package/runtime/python/okstra_vendor/networkx/algorithms/minors/__init__.py +0 -27
  223. package/runtime/python/okstra_vendor/networkx/algorithms/minors/contraction.py +0 -738
  224. package/runtime/python/okstra_vendor/networkx/algorithms/mis.py +0 -78
  225. package/runtime/python/okstra_vendor/networkx/algorithms/moral.py +0 -59
  226. package/runtime/python/okstra_vendor/networkx/algorithms/node_classification.py +0 -219
  227. package/runtime/python/okstra_vendor/networkx/algorithms/non_randomness.py +0 -155
  228. package/runtime/python/okstra_vendor/networkx/algorithms/operators/__init__.py +0 -4
  229. package/runtime/python/okstra_vendor/networkx/algorithms/operators/all.py +0 -324
  230. package/runtime/python/okstra_vendor/networkx/algorithms/operators/binary.py +0 -468
  231. package/runtime/python/okstra_vendor/networkx/algorithms/operators/product.py +0 -633
  232. package/runtime/python/okstra_vendor/networkx/algorithms/operators/unary.py +0 -77
  233. package/runtime/python/okstra_vendor/networkx/algorithms/perfect_graph.py +0 -73
  234. package/runtime/python/okstra_vendor/networkx/algorithms/planar_drawing.py +0 -464
  235. package/runtime/python/okstra_vendor/networkx/algorithms/planarity.py +0 -1463
  236. package/runtime/python/okstra_vendor/networkx/algorithms/polynomials.py +0 -306
  237. package/runtime/python/okstra_vendor/networkx/algorithms/reciprocity.py +0 -98
  238. package/runtime/python/okstra_vendor/networkx/algorithms/regular.py +0 -167
  239. package/runtime/python/okstra_vendor/networkx/algorithms/richclub.py +0 -138
  240. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/__init__.py +0 -5
  241. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/astar.py +0 -239
  242. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/dense.py +0 -264
  243. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/generic.py +0 -716
  244. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/unweighted.py +0 -625
  245. package/runtime/python/okstra_vendor/networkx/algorithms/shortest_paths/weighted.py +0 -2542
  246. package/runtime/python/okstra_vendor/networkx/algorithms/similarity.py +0 -2107
  247. package/runtime/python/okstra_vendor/networkx/algorithms/simple_paths.py +0 -966
  248. package/runtime/python/okstra_vendor/networkx/algorithms/smallworld.py +0 -404
  249. package/runtime/python/okstra_vendor/networkx/algorithms/smetric.py +0 -30
  250. package/runtime/python/okstra_vendor/networkx/algorithms/sparsifiers.py +0 -296
  251. package/runtime/python/okstra_vendor/networkx/algorithms/structuralholes.py +0 -374
  252. package/runtime/python/okstra_vendor/networkx/algorithms/summarization.py +0 -564
  253. package/runtime/python/okstra_vendor/networkx/algorithms/swap.py +0 -406
  254. package/runtime/python/okstra_vendor/networkx/algorithms/threshold.py +0 -981
  255. package/runtime/python/okstra_vendor/networkx/algorithms/time_dependent.py +0 -142
  256. package/runtime/python/okstra_vendor/networkx/algorithms/tournament.py +0 -406
  257. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/__init__.py +0 -5
  258. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/beamsearch.py +0 -90
  259. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/breadth_first_search.py +0 -576
  260. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/depth_first_search.py +0 -529
  261. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgebfs.py +0 -185
  262. package/runtime/python/okstra_vendor/networkx/algorithms/traversal/edgedfs.py +0 -182
  263. package/runtime/python/okstra_vendor/networkx/algorithms/tree/__init__.py +0 -7
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@@ -1,554 +0,0 @@
1
- """
2
- Famous social networks.
3
- """
4
-
5
- import networkx as nx
6
-
7
- __all__ = [
8
- "karate_club_graph",
9
- "davis_southern_women_graph",
10
- "florentine_families_graph",
11
- "les_miserables_graph",
12
- ]
13
-
14
-
15
- @nx._dispatchable(graphs=None, returns_graph=True)
16
- def karate_club_graph():
17
- """Returns Zachary's Karate Club graph.
18
-
19
- Each node in the returned graph has a node attribute 'club' that
20
- indicates the name of the club to which the member represented by that node
21
- belongs, either 'Mr. Hi' or 'Officer'. Each edge has a weight based on the
22
- number of contexts in which that edge's incident node members interacted.
23
-
24
- The dataset is derived from the 'Club After Split From Data' column of Table 3 in [1]_.
25
- This was in turn derived from the 'Club After Fission' column of Table 1 in the
26
- same paper. Note that the nodes are 0-indexed in NetworkX, but 1-indexed in the
27
- paper (the 'Individual Number in Matrix C' column of Table 3 starts at 1). This
28
- means, for example, that ``G.nodes[9]["club"]`` returns 'Officer', which
29
- corresponds to row 10 of Table 3 in the paper.
30
-
31
- Examples
32
- --------
33
- To get the name of the club to which a node belongs:
34
-
35
- >>> G = nx.karate_club_graph()
36
- >>> G.nodes[5]["club"]
37
- 'Mr. Hi'
38
- >>> G.nodes[9]["club"]
39
- 'Officer'
40
-
41
- References
42
- ----------
43
- .. [1] Zachary, Wayne W.
44
- "An Information Flow Model for Conflict and Fission in Small Groups."
45
- *Journal of Anthropological Research*, 33, 452--473, (1977).
46
- """
47
- # Create the set of all members, and the members of each club.
48
- all_members = set(range(34))
49
- club1 = {0, 1, 2, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 16, 17, 19, 21}
50
- # club2 = all_members - club1
51
-
52
- G = nx.Graph()
53
- G.add_nodes_from(all_members)
54
- G.name = "Zachary's Karate Club"
55
-
56
- zacharydat = """\
57
- 0 4 5 3 3 3 3 2 2 0 2 3 2 3 0 0 0 2 0 2 0 2 0 0 0 0 0 0 0 0 0 2 0 0
58
- 4 0 6 3 0 0 0 4 0 0 0 0 0 5 0 0 0 1 0 2 0 2 0 0 0 0 0 0 0 0 2 0 0 0
59
- 5 6 0 3 0 0 0 4 5 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 3 0
60
- 3 3 3 0 0 0 0 3 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
61
- 3 0 0 0 0 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
62
- 3 0 0 0 0 0 5 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
63
- 3 0 0 0 2 5 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
64
- 2 4 4 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
65
- 2 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 4 3
66
- 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
67
- 2 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
68
- 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
69
- 1 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
70
- 3 5 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
71
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2
72
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 4
73
- 0 0 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
74
- 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
75
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2
76
- 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
77
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 1
78
- 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
79
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
80
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 4 0 2 0 0 5 4
81
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 2 0 0
82
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 2 0 0 0 0 0 0 7 0 0
83
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 2
84
- 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 4
85
- 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 2
86
- 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 4 0 0 0 0 0 3 2
87
- 0 2 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3
88
- 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 7 0 0 2 0 0 0 4 4
89
- 0 0 2 0 0 0 0 0 3 0 0 0 0 0 3 3 0 0 1 0 3 0 2 5 0 0 0 0 0 4 3 4 0 5
90
- 0 0 0 0 0 0 0 0 4 2 0 0 0 3 2 4 0 0 2 1 1 0 3 4 0 0 2 4 2 2 3 4 5 0"""
91
-
92
- for row, line in enumerate(zacharydat.split("\n")):
93
- thisrow = [int(b) for b in line.split()]
94
- for col, entry in enumerate(thisrow):
95
- if entry >= 1:
96
- G.add_edge(row, col, weight=entry)
97
-
98
- # Add the name of each member's club as a node attribute.
99
- for v in G:
100
- G.nodes[v]["club"] = "Mr. Hi" if v in club1 else "Officer"
101
- return G
102
-
103
-
104
- @nx._dispatchable(graphs=None, returns_graph=True)
105
- def davis_southern_women_graph():
106
- """Returns Davis Southern women social network.
107
-
108
- This is a bipartite graph.
109
-
110
- References
111
- ----------
112
- .. [1] A. Davis, Gardner, B. B., Gardner, M. R., 1941. Deep South.
113
- University of Chicago Press, Chicago, IL.
114
- """
115
- G = nx.Graph()
116
- # Top nodes
117
- women = [
118
- "Evelyn Jefferson",
119
- "Laura Mandeville",
120
- "Theresa Anderson",
121
- "Brenda Rogers",
122
- "Charlotte McDowd",
123
- "Frances Anderson",
124
- "Eleanor Nye",
125
- "Pearl Oglethorpe",
126
- "Ruth DeSand",
127
- "Verne Sanderson",
128
- "Myra Liddel",
129
- "Katherina Rogers",
130
- "Sylvia Avondale",
131
- "Nora Fayette",
132
- "Helen Lloyd",
133
- "Dorothy Murchison",
134
- "Olivia Carleton",
135
- "Flora Price",
136
- ]
137
- G.add_nodes_from(women, bipartite=0)
138
- # Bottom nodes
139
- events = [
140
- "E1",
141
- "E2",
142
- "E3",
143
- "E4",
144
- "E5",
145
- "E6",
146
- "E7",
147
- "E8",
148
- "E9",
149
- "E10",
150
- "E11",
151
- "E12",
152
- "E13",
153
- "E14",
154
- ]
155
- G.add_nodes_from(events, bipartite=1)
156
-
157
- G.add_edges_from(
158
- [
159
- ("Evelyn Jefferson", "E1"),
160
- ("Evelyn Jefferson", "E2"),
161
- ("Evelyn Jefferson", "E3"),
162
- ("Evelyn Jefferson", "E4"),
163
- ("Evelyn Jefferson", "E5"),
164
- ("Evelyn Jefferson", "E6"),
165
- ("Evelyn Jefferson", "E8"),
166
- ("Evelyn Jefferson", "E9"),
167
- ("Laura Mandeville", "E1"),
168
- ("Laura Mandeville", "E2"),
169
- ("Laura Mandeville", "E3"),
170
- ("Laura Mandeville", "E5"),
171
- ("Laura Mandeville", "E6"),
172
- ("Laura Mandeville", "E7"),
173
- ("Laura Mandeville", "E8"),
174
- ("Theresa Anderson", "E2"),
175
- ("Theresa Anderson", "E3"),
176
- ("Theresa Anderson", "E4"),
177
- ("Theresa Anderson", "E5"),
178
- ("Theresa Anderson", "E6"),
179
- ("Theresa Anderson", "E7"),
180
- ("Theresa Anderson", "E8"),
181
- ("Theresa Anderson", "E9"),
182
- ("Brenda Rogers", "E1"),
183
- ("Brenda Rogers", "E3"),
184
- ("Brenda Rogers", "E4"),
185
- ("Brenda Rogers", "E5"),
186
- ("Brenda Rogers", "E6"),
187
- ("Brenda Rogers", "E7"),
188
- ("Brenda Rogers", "E8"),
189
- ("Charlotte McDowd", "E3"),
190
- ("Charlotte McDowd", "E4"),
191
- ("Charlotte McDowd", "E5"),
192
- ("Charlotte McDowd", "E7"),
193
- ("Frances Anderson", "E3"),
194
- ("Frances Anderson", "E5"),
195
- ("Frances Anderson", "E6"),
196
- ("Frances Anderson", "E8"),
197
- ("Eleanor Nye", "E5"),
198
- ("Eleanor Nye", "E6"),
199
- ("Eleanor Nye", "E7"),
200
- ("Eleanor Nye", "E8"),
201
- ("Pearl Oglethorpe", "E6"),
202
- ("Pearl Oglethorpe", "E8"),
203
- ("Pearl Oglethorpe", "E9"),
204
- ("Ruth DeSand", "E5"),
205
- ("Ruth DeSand", "E7"),
206
- ("Ruth DeSand", "E8"),
207
- ("Ruth DeSand", "E9"),
208
- ("Verne Sanderson", "E7"),
209
- ("Verne Sanderson", "E8"),
210
- ("Verne Sanderson", "E9"),
211
- ("Verne Sanderson", "E12"),
212
- ("Myra Liddel", "E8"),
213
- ("Myra Liddel", "E9"),
214
- ("Myra Liddel", "E10"),
215
- ("Myra Liddel", "E12"),
216
- ("Katherina Rogers", "E8"),
217
- ("Katherina Rogers", "E9"),
218
- ("Katherina Rogers", "E10"),
219
- ("Katherina Rogers", "E12"),
220
- ("Katherina Rogers", "E13"),
221
- ("Katherina Rogers", "E14"),
222
- ("Sylvia Avondale", "E7"),
223
- ("Sylvia Avondale", "E8"),
224
- ("Sylvia Avondale", "E9"),
225
- ("Sylvia Avondale", "E10"),
226
- ("Sylvia Avondale", "E12"),
227
- ("Sylvia Avondale", "E13"),
228
- ("Sylvia Avondale", "E14"),
229
- ("Nora Fayette", "E6"),
230
- ("Nora Fayette", "E7"),
231
- ("Nora Fayette", "E9"),
232
- ("Nora Fayette", "E10"),
233
- ("Nora Fayette", "E11"),
234
- ("Nora Fayette", "E12"),
235
- ("Nora Fayette", "E13"),
236
- ("Nora Fayette", "E14"),
237
- ("Helen Lloyd", "E7"),
238
- ("Helen Lloyd", "E8"),
239
- ("Helen Lloyd", "E10"),
240
- ("Helen Lloyd", "E11"),
241
- ("Helen Lloyd", "E12"),
242
- ("Dorothy Murchison", "E8"),
243
- ("Dorothy Murchison", "E9"),
244
- ("Olivia Carleton", "E9"),
245
- ("Olivia Carleton", "E11"),
246
- ("Flora Price", "E9"),
247
- ("Flora Price", "E11"),
248
- ]
249
- )
250
- G.graph["top"] = women
251
- G.graph["bottom"] = events
252
- return G
253
-
254
-
255
- @nx._dispatchable(graphs=None, returns_graph=True)
256
- def florentine_families_graph():
257
- """Returns Florentine families graph.
258
-
259
- References
260
- ----------
261
- .. [1] Ronald L. Breiger and Philippa E. Pattison
262
- Cumulated social roles: The duality of persons and their algebras,1
263
- Social Networks, Volume 8, Issue 3, September 1986, Pages 215-256
264
- """
265
- G = nx.Graph()
266
- G.add_edge("Acciaiuoli", "Medici")
267
- G.add_edge("Castellani", "Peruzzi")
268
- G.add_edge("Castellani", "Strozzi")
269
- G.add_edge("Castellani", "Barbadori")
270
- G.add_edge("Medici", "Barbadori")
271
- G.add_edge("Medici", "Ridolfi")
272
- G.add_edge("Medici", "Tornabuoni")
273
- G.add_edge("Medici", "Albizzi")
274
- G.add_edge("Medici", "Salviati")
275
- G.add_edge("Salviati", "Pazzi")
276
- G.add_edge("Peruzzi", "Strozzi")
277
- G.add_edge("Peruzzi", "Bischeri")
278
- G.add_edge("Strozzi", "Ridolfi")
279
- G.add_edge("Strozzi", "Bischeri")
280
- G.add_edge("Ridolfi", "Tornabuoni")
281
- G.add_edge("Tornabuoni", "Guadagni")
282
- G.add_edge("Albizzi", "Ginori")
283
- G.add_edge("Albizzi", "Guadagni")
284
- G.add_edge("Bischeri", "Guadagni")
285
- G.add_edge("Guadagni", "Lamberteschi")
286
- return G
287
-
288
-
289
- @nx._dispatchable(graphs=None, returns_graph=True)
290
- def les_miserables_graph():
291
- """Returns coappearance network of characters in the novel Les Miserables.
292
-
293
- References
294
- ----------
295
- .. [1] D. E. Knuth, 1993.
296
- The Stanford GraphBase: a platform for combinatorial computing,
297
- pp. 74-87. New York: AcM Press.
298
- """
299
- G = nx.Graph()
300
- G.add_edge("Napoleon", "Myriel", weight=1)
301
- G.add_edge("MlleBaptistine", "Myriel", weight=8)
302
- G.add_edge("MmeMagloire", "Myriel", weight=10)
303
- G.add_edge("MmeMagloire", "MlleBaptistine", weight=6)
304
- G.add_edge("CountessDeLo", "Myriel", weight=1)
305
- G.add_edge("Geborand", "Myriel", weight=1)
306
- G.add_edge("Champtercier", "Myriel", weight=1)
307
- G.add_edge("Cravatte", "Myriel", weight=1)
308
- G.add_edge("Count", "Myriel", weight=2)
309
- G.add_edge("OldMan", "Myriel", weight=1)
310
- G.add_edge("Valjean", "Labarre", weight=1)
311
- G.add_edge("Valjean", "MmeMagloire", weight=3)
312
- G.add_edge("Valjean", "MlleBaptistine", weight=3)
313
- G.add_edge("Valjean", "Myriel", weight=5)
314
- G.add_edge("Marguerite", "Valjean", weight=1)
315
- G.add_edge("MmeDeR", "Valjean", weight=1)
316
- G.add_edge("Isabeau", "Valjean", weight=1)
317
- G.add_edge("Gervais", "Valjean", weight=1)
318
- G.add_edge("Listolier", "Tholomyes", weight=4)
319
- G.add_edge("Fameuil", "Tholomyes", weight=4)
320
- G.add_edge("Fameuil", "Listolier", weight=4)
321
- G.add_edge("Blacheville", "Tholomyes", weight=4)
322
- G.add_edge("Blacheville", "Listolier", weight=4)
323
- G.add_edge("Blacheville", "Fameuil", weight=4)
324
- G.add_edge("Favourite", "Tholomyes", weight=3)
325
- G.add_edge("Favourite", "Listolier", weight=3)
326
- G.add_edge("Favourite", "Fameuil", weight=3)
327
- G.add_edge("Favourite", "Blacheville", weight=4)
328
- G.add_edge("Dahlia", "Tholomyes", weight=3)
329
- G.add_edge("Dahlia", "Listolier", weight=3)
330
- G.add_edge("Dahlia", "Fameuil", weight=3)
331
- G.add_edge("Dahlia", "Blacheville", weight=3)
332
- G.add_edge("Dahlia", "Favourite", weight=5)
333
- G.add_edge("Zephine", "Tholomyes", weight=3)
334
- G.add_edge("Zephine", "Listolier", weight=3)
335
- G.add_edge("Zephine", "Fameuil", weight=3)
336
- G.add_edge("Zephine", "Blacheville", weight=3)
337
- G.add_edge("Zephine", "Favourite", weight=4)
338
- G.add_edge("Zephine", "Dahlia", weight=4)
339
- G.add_edge("Fantine", "Tholomyes", weight=3)
340
- G.add_edge("Fantine", "Listolier", weight=3)
341
- G.add_edge("Fantine", "Fameuil", weight=3)
342
- G.add_edge("Fantine", "Blacheville", weight=3)
343
- G.add_edge("Fantine", "Favourite", weight=4)
344
- G.add_edge("Fantine", "Dahlia", weight=4)
345
- G.add_edge("Fantine", "Zephine", weight=4)
346
- G.add_edge("Fantine", "Marguerite", weight=2)
347
- G.add_edge("Fantine", "Valjean", weight=9)
348
- G.add_edge("MmeThenardier", "Fantine", weight=2)
349
- G.add_edge("MmeThenardier", "Valjean", weight=7)
350
- G.add_edge("Thenardier", "MmeThenardier", weight=13)
351
- G.add_edge("Thenardier", "Fantine", weight=1)
352
- G.add_edge("Thenardier", "Valjean", weight=12)
353
- G.add_edge("Cosette", "MmeThenardier", weight=4)
354
- G.add_edge("Cosette", "Valjean", weight=31)
355
- G.add_edge("Cosette", "Tholomyes", weight=1)
356
- G.add_edge("Cosette", "Thenardier", weight=1)
357
- G.add_edge("Javert", "Valjean", weight=17)
358
- G.add_edge("Javert", "Fantine", weight=5)
359
- G.add_edge("Javert", "Thenardier", weight=5)
360
- G.add_edge("Javert", "MmeThenardier", weight=1)
361
- G.add_edge("Javert", "Cosette", weight=1)
362
- G.add_edge("Fauchelevent", "Valjean", weight=8)
363
- G.add_edge("Fauchelevent", "Javert", weight=1)
364
- G.add_edge("Bamatabois", "Fantine", weight=1)
365
- G.add_edge("Bamatabois", "Javert", weight=1)
366
- G.add_edge("Bamatabois", "Valjean", weight=2)
367
- G.add_edge("Perpetue", "Fantine", weight=1)
368
- G.add_edge("Simplice", "Perpetue", weight=2)
369
- G.add_edge("Simplice", "Valjean", weight=3)
370
- G.add_edge("Simplice", "Fantine", weight=2)
371
- G.add_edge("Simplice", "Javert", weight=1)
372
- G.add_edge("Scaufflaire", "Valjean", weight=1)
373
- G.add_edge("Woman1", "Valjean", weight=2)
374
- G.add_edge("Woman1", "Javert", weight=1)
375
- G.add_edge("Judge", "Valjean", weight=3)
376
- G.add_edge("Judge", "Bamatabois", weight=2)
377
- G.add_edge("Champmathieu", "Valjean", weight=3)
378
- G.add_edge("Champmathieu", "Judge", weight=3)
379
- G.add_edge("Champmathieu", "Bamatabois", weight=2)
380
- G.add_edge("Brevet", "Judge", weight=2)
381
- G.add_edge("Brevet", "Champmathieu", weight=2)
382
- G.add_edge("Brevet", "Valjean", weight=2)
383
- G.add_edge("Brevet", "Bamatabois", weight=1)
384
- G.add_edge("Chenildieu", "Judge", weight=2)
385
- G.add_edge("Chenildieu", "Champmathieu", weight=2)
386
- G.add_edge("Chenildieu", "Brevet", weight=2)
387
- G.add_edge("Chenildieu", "Valjean", weight=2)
388
- G.add_edge("Chenildieu", "Bamatabois", weight=1)
389
- G.add_edge("Cochepaille", "Judge", weight=2)
390
- G.add_edge("Cochepaille", "Champmathieu", weight=2)
391
- G.add_edge("Cochepaille", "Brevet", weight=2)
392
- G.add_edge("Cochepaille", "Chenildieu", weight=2)
393
- G.add_edge("Cochepaille", "Valjean", weight=2)
394
- G.add_edge("Cochepaille", "Bamatabois", weight=1)
395
- G.add_edge("Pontmercy", "Thenardier", weight=1)
396
- G.add_edge("Boulatruelle", "Thenardier", weight=1)
397
- G.add_edge("Eponine", "MmeThenardier", weight=2)
398
- G.add_edge("Eponine", "Thenardier", weight=3)
399
- G.add_edge("Anzelma", "Eponine", weight=2)
400
- G.add_edge("Anzelma", "Thenardier", weight=2)
401
- G.add_edge("Anzelma", "MmeThenardier", weight=1)
402
- G.add_edge("Woman2", "Valjean", weight=3)
403
- G.add_edge("Woman2", "Cosette", weight=1)
404
- G.add_edge("Woman2", "Javert", weight=1)
405
- G.add_edge("MotherInnocent", "Fauchelevent", weight=3)
406
- G.add_edge("MotherInnocent", "Valjean", weight=1)
407
- G.add_edge("Gribier", "Fauchelevent", weight=2)
408
- G.add_edge("MmeBurgon", "Jondrette", weight=1)
409
- G.add_edge("Gavroche", "MmeBurgon", weight=2)
410
- G.add_edge("Gavroche", "Thenardier", weight=1)
411
- G.add_edge("Gavroche", "Javert", weight=1)
412
- G.add_edge("Gavroche", "Valjean", weight=1)
413
- G.add_edge("Gillenormand", "Cosette", weight=3)
414
- G.add_edge("Gillenormand", "Valjean", weight=2)
415
- G.add_edge("Magnon", "Gillenormand", weight=1)
416
- G.add_edge("Magnon", "MmeThenardier", weight=1)
417
- G.add_edge("MlleGillenormand", "Gillenormand", weight=9)
418
- G.add_edge("MlleGillenormand", "Cosette", weight=2)
419
- G.add_edge("MlleGillenormand", "Valjean", weight=2)
420
- G.add_edge("MmePontmercy", "MlleGillenormand", weight=1)
421
- G.add_edge("MmePontmercy", "Pontmercy", weight=1)
422
- G.add_edge("MlleVaubois", "MlleGillenormand", weight=1)
423
- G.add_edge("LtGillenormand", "MlleGillenormand", weight=2)
424
- G.add_edge("LtGillenormand", "Gillenormand", weight=1)
425
- G.add_edge("LtGillenormand", "Cosette", weight=1)
426
- G.add_edge("Marius", "MlleGillenormand", weight=6)
427
- G.add_edge("Marius", "Gillenormand", weight=12)
428
- G.add_edge("Marius", "Pontmercy", weight=1)
429
- G.add_edge("Marius", "LtGillenormand", weight=1)
430
- G.add_edge("Marius", "Cosette", weight=21)
431
- G.add_edge("Marius", "Valjean", weight=19)
432
- G.add_edge("Marius", "Tholomyes", weight=1)
433
- G.add_edge("Marius", "Thenardier", weight=2)
434
- G.add_edge("Marius", "Eponine", weight=5)
435
- G.add_edge("Marius", "Gavroche", weight=4)
436
- G.add_edge("BaronessT", "Gillenormand", weight=1)
437
- G.add_edge("BaronessT", "Marius", weight=1)
438
- G.add_edge("Mabeuf", "Marius", weight=1)
439
- G.add_edge("Mabeuf", "Eponine", weight=1)
440
- G.add_edge("Mabeuf", "Gavroche", weight=1)
441
- G.add_edge("Enjolras", "Marius", weight=7)
442
- G.add_edge("Enjolras", "Gavroche", weight=7)
443
- G.add_edge("Enjolras", "Javert", weight=6)
444
- G.add_edge("Enjolras", "Mabeuf", weight=1)
445
- G.add_edge("Enjolras", "Valjean", weight=4)
446
- G.add_edge("Combeferre", "Enjolras", weight=15)
447
- G.add_edge("Combeferre", "Marius", weight=5)
448
- G.add_edge("Combeferre", "Gavroche", weight=6)
449
- G.add_edge("Combeferre", "Mabeuf", weight=2)
450
- G.add_edge("Prouvaire", "Gavroche", weight=1)
451
- G.add_edge("Prouvaire", "Enjolras", weight=4)
452
- G.add_edge("Prouvaire", "Combeferre", weight=2)
453
- G.add_edge("Feuilly", "Gavroche", weight=2)
454
- G.add_edge("Feuilly", "Enjolras", weight=6)
455
- G.add_edge("Feuilly", "Prouvaire", weight=2)
456
- G.add_edge("Feuilly", "Combeferre", weight=5)
457
- G.add_edge("Feuilly", "Mabeuf", weight=1)
458
- G.add_edge("Feuilly", "Marius", weight=1)
459
- G.add_edge("Courfeyrac", "Marius", weight=9)
460
- G.add_edge("Courfeyrac", "Enjolras", weight=17)
461
- G.add_edge("Courfeyrac", "Combeferre", weight=13)
462
- G.add_edge("Courfeyrac", "Gavroche", weight=7)
463
- G.add_edge("Courfeyrac", "Mabeuf", weight=2)
464
- G.add_edge("Courfeyrac", "Eponine", weight=1)
465
- G.add_edge("Courfeyrac", "Feuilly", weight=6)
466
- G.add_edge("Courfeyrac", "Prouvaire", weight=3)
467
- G.add_edge("Bahorel", "Combeferre", weight=5)
468
- G.add_edge("Bahorel", "Gavroche", weight=5)
469
- G.add_edge("Bahorel", "Courfeyrac", weight=6)
470
- G.add_edge("Bahorel", "Mabeuf", weight=2)
471
- G.add_edge("Bahorel", "Enjolras", weight=4)
472
- G.add_edge("Bahorel", "Feuilly", weight=3)
473
- G.add_edge("Bahorel", "Prouvaire", weight=2)
474
- G.add_edge("Bahorel", "Marius", weight=1)
475
- G.add_edge("Bossuet", "Marius", weight=5)
476
- G.add_edge("Bossuet", "Courfeyrac", weight=12)
477
- G.add_edge("Bossuet", "Gavroche", weight=5)
478
- G.add_edge("Bossuet", "Bahorel", weight=4)
479
- G.add_edge("Bossuet", "Enjolras", weight=10)
480
- G.add_edge("Bossuet", "Feuilly", weight=6)
481
- G.add_edge("Bossuet", "Prouvaire", weight=2)
482
- G.add_edge("Bossuet", "Combeferre", weight=9)
483
- G.add_edge("Bossuet", "Mabeuf", weight=1)
484
- G.add_edge("Bossuet", "Valjean", weight=1)
485
- G.add_edge("Joly", "Bahorel", weight=5)
486
- G.add_edge("Joly", "Bossuet", weight=7)
487
- G.add_edge("Joly", "Gavroche", weight=3)
488
- G.add_edge("Joly", "Courfeyrac", weight=5)
489
- G.add_edge("Joly", "Enjolras", weight=5)
490
- G.add_edge("Joly", "Feuilly", weight=5)
491
- G.add_edge("Joly", "Prouvaire", weight=2)
492
- G.add_edge("Joly", "Combeferre", weight=5)
493
- G.add_edge("Joly", "Mabeuf", weight=1)
494
- G.add_edge("Joly", "Marius", weight=2)
495
- G.add_edge("Grantaire", "Bossuet", weight=3)
496
- G.add_edge("Grantaire", "Enjolras", weight=3)
497
- G.add_edge("Grantaire", "Combeferre", weight=1)
498
- G.add_edge("Grantaire", "Courfeyrac", weight=2)
499
- G.add_edge("Grantaire", "Joly", weight=2)
500
- G.add_edge("Grantaire", "Gavroche", weight=1)
501
- G.add_edge("Grantaire", "Bahorel", weight=1)
502
- G.add_edge("Grantaire", "Feuilly", weight=1)
503
- G.add_edge("Grantaire", "Prouvaire", weight=1)
504
- G.add_edge("MotherPlutarch", "Mabeuf", weight=3)
505
- G.add_edge("Gueulemer", "Thenardier", weight=5)
506
- G.add_edge("Gueulemer", "Valjean", weight=1)
507
- G.add_edge("Gueulemer", "MmeThenardier", weight=1)
508
- G.add_edge("Gueulemer", "Javert", weight=1)
509
- G.add_edge("Gueulemer", "Gavroche", weight=1)
510
- G.add_edge("Gueulemer", "Eponine", weight=1)
511
- G.add_edge("Babet", "Thenardier", weight=6)
512
- G.add_edge("Babet", "Gueulemer", weight=6)
513
- G.add_edge("Babet", "Valjean", weight=1)
514
- G.add_edge("Babet", "MmeThenardier", weight=1)
515
- G.add_edge("Babet", "Javert", weight=2)
516
- G.add_edge("Babet", "Gavroche", weight=1)
517
- G.add_edge("Babet", "Eponine", weight=1)
518
- G.add_edge("Claquesous", "Thenardier", weight=4)
519
- G.add_edge("Claquesous", "Babet", weight=4)
520
- G.add_edge("Claquesous", "Gueulemer", weight=4)
521
- G.add_edge("Claquesous", "Valjean", weight=1)
522
- G.add_edge("Claquesous", "MmeThenardier", weight=1)
523
- G.add_edge("Claquesous", "Javert", weight=1)
524
- G.add_edge("Claquesous", "Eponine", weight=1)
525
- G.add_edge("Claquesous", "Enjolras", weight=1)
526
- G.add_edge("Montparnasse", "Javert", weight=1)
527
- G.add_edge("Montparnasse", "Babet", weight=2)
528
- G.add_edge("Montparnasse", "Gueulemer", weight=2)
529
- G.add_edge("Montparnasse", "Claquesous", weight=2)
530
- G.add_edge("Montparnasse", "Valjean", weight=1)
531
- G.add_edge("Montparnasse", "Gavroche", weight=1)
532
- G.add_edge("Montparnasse", "Eponine", weight=1)
533
- G.add_edge("Montparnasse", "Thenardier", weight=1)
534
- G.add_edge("Toussaint", "Cosette", weight=2)
535
- G.add_edge("Toussaint", "Javert", weight=1)
536
- G.add_edge("Toussaint", "Valjean", weight=1)
537
- G.add_edge("Child1", "Gavroche", weight=2)
538
- G.add_edge("Child2", "Gavroche", weight=2)
539
- G.add_edge("Child2", "Child1", weight=3)
540
- G.add_edge("Brujon", "Babet", weight=3)
541
- G.add_edge("Brujon", "Gueulemer", weight=3)
542
- G.add_edge("Brujon", "Thenardier", weight=3)
543
- G.add_edge("Brujon", "Gavroche", weight=1)
544
- G.add_edge("Brujon", "Eponine", weight=1)
545
- G.add_edge("Brujon", "Claquesous", weight=1)
546
- G.add_edge("Brujon", "Montparnasse", weight=1)
547
- G.add_edge("MmeHucheloup", "Bossuet", weight=1)
548
- G.add_edge("MmeHucheloup", "Joly", weight=1)
549
- G.add_edge("MmeHucheloup", "Grantaire", weight=1)
550
- G.add_edge("MmeHucheloup", "Bahorel", weight=1)
551
- G.add_edge("MmeHucheloup", "Courfeyrac", weight=1)
552
- G.add_edge("MmeHucheloup", "Gavroche", weight=1)
553
- G.add_edge("MmeHucheloup", "Enjolras", weight=1)
554
- return G
@@ -1,120 +0,0 @@
1
- """Generates graphs with a given eigenvector structure"""
2
-
3
- import networkx as nx
4
- from networkx.utils import np_random_state
5
-
6
- __all__ = ["spectral_graph_forge"]
7
-
8
-
9
- @np_random_state(3)
10
- @nx._dispatchable(preserve_edge_attrs={"G": {"weight": 1}}, returns_graph=True)
11
- def spectral_graph_forge(G, alpha, transformation="identity", seed=None):
12
- """Returns a random simple graph with spectrum resembling that of `G`
13
-
14
- This algorithm, called Spectral Graph Forge (SGF), computes the
15
- eigenvectors of a given graph adjacency matrix, filters them and
16
- builds a random graph with a similar eigenstructure.
17
- SGF has been proved to be particularly useful for synthesizing
18
- realistic social networks and it can also be used to anonymize
19
- graph sensitive data.
20
-
21
- Parameters
22
- ----------
23
- G : Graph
24
- alpha : float
25
- Ratio representing the percentage of eigenvectors of G to consider,
26
- values in [0,1].
27
- transformation : string, optional
28
- Represents the intended matrix linear transformation, possible values
29
- are 'identity' and 'modularity'
30
- seed : integer, random_state, or None (default)
31
- Indicator of numpy random number generation state.
32
- See :ref:`Randomness<randomness>`.
33
-
34
- Returns
35
- -------
36
- H : Graph
37
- A graph with a similar eigenvector structure of the input one.
38
-
39
- Raises
40
- ------
41
- NetworkXError
42
- If transformation has a value different from 'identity' or 'modularity'
43
-
44
- Notes
45
- -----
46
- Spectral Graph Forge (SGF) generates a random simple graph resembling the
47
- global properties of the given one.
48
- It leverages the low-rank approximation of the associated adjacency matrix
49
- driven by the *alpha* precision parameter.
50
- SGF preserves the number of nodes of the input graph and their ordering.
51
- This way, nodes of output graphs resemble the properties of the input one
52
- and attributes can be directly mapped.
53
-
54
- It considers the graph adjacency matrices which can optionally be
55
- transformed to other symmetric real matrices (currently transformation
56
- options include *identity* and *modularity*).
57
- The *modularity* transformation, in the sense of Newman's modularity matrix
58
- allows the focusing on community structure related properties of the graph.
59
-
60
- SGF applies a low-rank approximation whose fixed rank is computed from the
61
- ratio *alpha* of the input graph adjacency matrix dimension.
62
- This step performs a filtering on the input eigenvectors similar to the low
63
- pass filtering common in telecommunications.
64
-
65
- The filtered values (after truncation) are used as input to a Bernoulli
66
- sampling for constructing a random adjacency matrix.
67
-
68
- References
69
- ----------
70
- .. [1] L. Baldesi, C. T. Butts, A. Markopoulou, "Spectral Graph Forge:
71
- Graph Generation Targeting Modularity", IEEE Infocom, '18.
72
- https://arxiv.org/abs/1801.01715
73
- .. [2] M. Newman, "Networks: an introduction", Oxford university press,
74
- 2010
75
-
76
- Examples
77
- --------
78
- >>> G = nx.karate_club_graph()
79
- >>> H = nx.spectral_graph_forge(G, 0.3)
80
- >>>
81
- """
82
- import numpy as np
83
- import scipy as sp
84
-
85
- available_transformations = ["identity", "modularity"]
86
- alpha = np.clip(alpha, 0, 1)
87
- A = nx.to_numpy_array(G)
88
- n = A.shape[1]
89
- level = round(n * alpha)
90
-
91
- if transformation not in available_transformations:
92
- msg = f"{transformation!r} is not a valid transformation. "
93
- msg += f"Transformations: {available_transformations}"
94
- raise nx.NetworkXError(msg)
95
-
96
- K = np.ones((1, n)) @ A
97
-
98
- B = A
99
- if transformation == "modularity":
100
- B -= K.T @ K / K.sum()
101
-
102
- # Compute low-rank approximation of B
103
- evals, evecs = np.linalg.eigh(B)
104
- k = np.argsort(np.abs(evals))[::-1] # indices of evals in descending order
105
- evecs[:, k[np.arange(level, n)]] = 0 # set smallest eigenvectors to 0
106
- B = evecs @ np.diag(evals) @ evecs.T
107
-
108
- if transformation == "modularity":
109
- B += K.T @ K / K.sum()
110
-
111
- B = np.clip(B, 0, 1)
112
- np.fill_diagonal(B, 0)
113
-
114
- for i in range(n - 1):
115
- B[i, i + 1 :] = sp.stats.bernoulli.rvs(B[i, i + 1 :], random_state=seed)
116
- B[i + 1 :, i] = np.transpose(B[i, i + 1 :])
117
-
118
- H = nx.from_numpy_array(B)
119
-
120
- return H