okstra 0.130.4 → 0.131.1

package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tree.py

@@ -1,137 +0,0 @@
-from itertools import chain
-
-import networkx as nx
-
-__all__ = ["tree_data", "tree_graph"]
-
-
-def tree_data(G, root, ident="id", children="children"):
-    """Returns data in tree format that is suitable for JSON serialization
-    and use in JavaScript documents.
-
-    Parameters
-    ----------
-    G : NetworkX graph
-       G must be an oriented tree
-
-    root : node
-       The root of the tree
-
-    ident : string
-        Attribute name for storing NetworkX-internal graph data. `ident` must
-        have a different value than `children`. The default is 'id'.
-
-    children : string
-        Attribute name for storing NetworkX-internal graph data. `children`
-        must have a different value than `ident`. The default is 'children'.
-
-    Returns
-    -------
-    data : dict
-       A dictionary with node-link formatted data.
-
-    Raises
-    ------
-    NetworkXError
-        If `children` and `ident` attributes are identical.
-
-    Examples
-    --------
-    >>> from networkx.readwrite import json_graph
-    >>> G = nx.DiGraph([(1, 2)])
-    >>> data = json_graph.tree_data(G, root=1)
-
-    To serialize with json
-
-    >>> import json
-    >>> s = json.dumps(data)
-
-    Notes
-    -----
-    Node attributes are stored in this format but keys
-    for attributes must be strings if you want to serialize with JSON.
-
-    Graph and edge attributes are not stored.
-
-    See Also
-    --------
-    tree_graph, node_link_data, adjacency_data
-    """
-    if G.number_of_nodes() != G.number_of_edges() + 1:
-        raise TypeError("G is not a tree.")
-    if not G.is_directed():
-        raise TypeError("G is not directed.")
-    if not nx.is_weakly_connected(G):
-        raise TypeError("G is not weakly connected.")
-
-    if ident == children:
-        raise nx.NetworkXError("The values for `id` and `children` must be different.")
-
-    def add_children(n, G):
-        nbrs = G[n]
-        if len(nbrs) == 0:
-            return []
-        children_ = []
-        for child in nbrs:
-            d = {**G.nodes[child], ident: child}
-            c = add_children(child, G)
-            if c:
-                d[children] = c
-            children_.append(d)
-        return children_
-
-    return {**G.nodes[root], ident: root, children: add_children(root, G)}
-
-
-@nx._dispatchable(graphs=None, returns_graph=True)
-def tree_graph(data, ident="id", children="children"):
-    """Returns graph from tree data format.
-
-    Parameters
-    ----------
-    data : dict
-        Tree formatted graph data
-
-    ident : string
-        Attribute name for storing NetworkX-internal graph data. `ident` must
-        have a different value than `children`. The default is 'id'.
-
-    children : string
-        Attribute name for storing NetworkX-internal graph data. `children`
-        must have a different value than `ident`. The default is 'children'.
-
-    Returns
-    -------
-    G : NetworkX DiGraph
-
-    Examples
-    --------
-    >>> from networkx.readwrite import json_graph
-    >>> G = nx.DiGraph([(1, 2)])
-    >>> data = json_graph.tree_data(G, root=1)
-    >>> H = json_graph.tree_graph(data)
-
-    See Also
-    --------
-    tree_data, node_link_data, adjacency_data
-    """
-    graph = nx.DiGraph()
-
-    def add_children(parent, children_):
-        for data in children_:
-            child = data[ident]
-            graph.add_edge(parent, child)
-            grandchildren = data.get(children, [])
-            if grandchildren:
-                add_children(child, grandchildren)
-            nodedata = {
-                str(k): v for k, v in data.items() if k != ident and k != children
-            }
-            graph.add_node(child, **nodedata)
-
-    root = data[ident]
-    children_ = data.get(children, [])
-    nodedata = {str(k): v for k, v in data.items() if k != ident and k != children}
-    graph.add_node(root, **nodedata)
-    add_children(root, children_)
-    return graph

package/runtime/python/okstra_vendor/networkx/readwrite/leda.py

@@ -1,108 +0,0 @@
-"""
-Read graphs in LEDA format.
-
-LEDA is a C++ class library for efficient data types and algorithms.
-
-Format
-------
-See http://www.algorithmic-solutions.info/leda_guide/graphs/leda_native_graph_fileformat.html
-
-"""
-# Original author: D. Eppstein, UC Irvine, August 12, 2003.
-# The original code at http://www.ics.uci.edu/~eppstein/PADS/ is public domain.
-
-__all__ = ["read_leda", "parse_leda"]
-
-import networkx as nx
-from networkx.exception import NetworkXError
-from networkx.utils import open_file
-
-
-@open_file(0, mode="rb")
-@nx._dispatchable(graphs=None, returns_graph=True)
-def read_leda(path, encoding="UTF-8"):
-    """Read graph in LEDA format from path.
-
-    Parameters
-    ----------
-    path : file or string
-       Filename or file handle to read.
-       Filenames ending in .gz or .bz2 will be decompressed.
-
-    Returns
-    -------
-    G : NetworkX graph
-
-    Examples
-    --------
-    >>> G = nx.read_leda("file.leda")  # doctest: +SKIP
-
-    References
-    ----------
-    .. [1] http://www.algorithmic-solutions.info/leda_guide/graphs/leda_native_graph_fileformat.html
-    """
-    lines = (line.decode(encoding) for line in path)
-    G = parse_leda(lines)
-    return G
-
-
-@nx._dispatchable(graphs=None, returns_graph=True)
-def parse_leda(lines):
-    """Read graph in LEDA format from string or iterable.
-
-    Parameters
-    ----------
-    lines : string or iterable
-       Data in LEDA format.
-
-    Returns
-    -------
-    G : NetworkX graph
-
-    Examples
-    --------
-    >>> G = nx.parse_leda(string)  # doctest: +SKIP
-
-    References
-    ----------
-    .. [1] http://www.algorithmic-solutions.info/leda_guide/graphs/leda_native_graph_fileformat.html
-    """
-    if isinstance(lines, str):
-        lines = iter(lines.split("\n"))
-    lines = iter(
-        [
-            line.rstrip("\n")
-            for line in lines
-            if not (line.startswith(("#", "\n")) or line == "")
-        ]
-    )
-    for i in range(3):
-        next(lines)
-    # Graph
-    du = int(next(lines))  # -1=directed, -2=undirected
-    if du == -1:
-        G = nx.DiGraph()
-    else:
-        G = nx.Graph()
-
-    # Nodes
-    n = int(next(lines))  # number of nodes
-    node = {}
-    for i in range(1, n + 1):  # LEDA counts from 1 to n
-        symbol = next(lines).rstrip().strip("|{}|  ")
-        if symbol == "":
-            symbol = str(i)  # use int if no label - could be trouble
-        node[i] = symbol
-
-    G.add_nodes_from([s for i, s in node.items()])
-
-    # Edges
-    m = int(next(lines))  # number of edges
-    for i in range(m):
-        try:
-            s, t, reversal, label = next(lines).split()
-        except BaseException as err:
-            raise NetworkXError(f"Too few fields in LEDA.GRAPH edge {i + 1}") from err
-        # BEWARE: no handling of reversal edges
-        G.add_edge(node[int(s)], node[int(t)], label=label[2:-2])
-    return G

package/runtime/python/okstra_vendor/networkx/readwrite/multiline_adjlist.py

@@ -1,393 +0,0 @@
-"""
-*************************
-Multi-line Adjacency List
-*************************
-Read and write NetworkX graphs as multi-line adjacency lists.
-
-The multi-line adjacency list format is useful for graphs with
-nodes that can be meaningfully represented as strings.  With this format
-simple edge data can be stored but node or graph data is not.
-
-Format
-------
-The first label in a line is the source node label followed by the node degree
-d.  The next d lines are target node labels and optional edge data.
-That pattern repeats for all nodes in the graph.
-
-The graph with edges a-b, a-c, d-e can be represented as the following
-adjacency list (anything following the # in a line is a comment)::
-
-     # example.multiline-adjlist
-     a 2
-     b
-     c
-     d 1
-     e
-"""
-
-__all__ = [
-    "generate_multiline_adjlist",
-    "write_multiline_adjlist",
-    "parse_multiline_adjlist",
-    "read_multiline_adjlist",
-]
-
-import networkx as nx
-from networkx.utils import open_file
-
-
-def generate_multiline_adjlist(G, delimiter=" "):
-    """Generate a single line of the graph G in multiline adjacency list format.
-
-    Parameters
-    ----------
-    G : NetworkX graph
-
-    delimiter : string, optional
-       Separator for node labels
-
-    Returns
-    -------
-    lines : string
-        Lines of data in multiline adjlist format.
-
-    Examples
-    --------
-    >>> G = nx.lollipop_graph(4, 3)
-    >>> for line in nx.generate_multiline_adjlist(G):
-    ...     print(line)
-    0 3
-    1 {}
-    2 {}
-    3 {}
-    1 2
-    2 {}
-    3 {}
-    2 1
-    3 {}
-    3 1
-    4 {}
-    4 1
-    5 {}
-    5 1
-    6 {}
-    6 0
-
-    See Also
-    --------
-    write_multiline_adjlist, read_multiline_adjlist
-    """
-    if G.is_directed():
-        if G.is_multigraph():
-            for s, nbrs in G.adjacency():
-                nbr_edges = [
-                    (u, data)
-                    for u, datadict in nbrs.items()
-                    for key, data in datadict.items()
-                ]
-                deg = len(nbr_edges)
-                yield str(s) + delimiter + str(deg)
-                for u, d in nbr_edges:
-                    if d is None:
-                        yield str(u)
-                    else:
-                        yield str(u) + delimiter + str(d)
-        else:  # directed single edges
-            for s, nbrs in G.adjacency():
-                deg = len(nbrs)
-                yield str(s) + delimiter + str(deg)
-                for u, d in nbrs.items():
-                    if d is None:
-                        yield str(u)
-                    else:
-                        yield str(u) + delimiter + str(d)
-    else:  # undirected
-        if G.is_multigraph():
-            seen = set()  # helper dict used to avoid duplicate edges
-            for s, nbrs in G.adjacency():
-                nbr_edges = [
-                    (u, data)
-                    for u, datadict in nbrs.items()
-                    if u not in seen
-                    for key, data in datadict.items()
-                ]
-                deg = len(nbr_edges)
-                yield str(s) + delimiter + str(deg)
-                for u, d in nbr_edges:
-                    if d is None:
-                        yield str(u)
-                    else:
-                        yield str(u) + delimiter + str(d)
-                seen.add(s)
-        else:  # undirected single edges
-            seen = set()  # helper dict used to avoid duplicate edges
-            for s, nbrs in G.adjacency():
-                nbr_edges = [(u, d) for u, d in nbrs.items() if u not in seen]
-                deg = len(nbr_edges)
-                yield str(s) + delimiter + str(deg)
-                for u, d in nbr_edges:
-                    if d is None:
-                        yield str(u)
-                    else:
-                        yield str(u) + delimiter + str(d)
-                seen.add(s)
-
-
-@open_file(1, mode="wb")
-def write_multiline_adjlist(G, path, delimiter=" ", comments="#", encoding="utf-8"):
-    """Write the graph G in multiline adjacency list format to path
-
-    Parameters
-    ----------
-    G : NetworkX graph
-
-    path : string or file
-       Filename or file handle to write to.
-       Filenames ending in .gz or .bz2 will be compressed.
-
-    comments : string, optional
-       Marker for comment lines
-
-    delimiter : string, optional
-       Separator for node labels
-
-    encoding : string, optional
-       Text encoding.
-
-    Examples
-    --------
-    >>> G = nx.path_graph(4)
-    >>> nx.write_multiline_adjlist(G, "test.multi_adjlist")
-
-    The path can be a file handle or a string with the name of the file. If a
-    file handle is provided, it has to be opened in 'wb' mode.
-
-    >>> fh = open("test.multi_adjlist2", "wb")
-    >>> nx.write_multiline_adjlist(G, fh)
-
-    Filenames ending in .gz or .bz2 will be compressed.
-
-    >>> nx.write_multiline_adjlist(G, "test.multi_adjlist.gz")
-
-    See Also
-    --------
-    read_multiline_adjlist
-    """
-    import sys
-    import time
-
-    pargs = comments + " ".join(sys.argv)
-    header = (
-        f"{pargs}\n"
-        + comments
-        + f" GMT {time.asctime(time.gmtime())}\n"
-        + comments
-        + f" {G.name}\n"
-    )
-    path.write(header.encode(encoding))
-
-    for multiline in generate_multiline_adjlist(G, delimiter):
-        multiline += "\n"
-        path.write(multiline.encode(encoding))
-
-
-@nx._dispatchable(graphs=None, returns_graph=True)
-def parse_multiline_adjlist(
-    lines, comments="#", delimiter=None, create_using=None, nodetype=None, edgetype=None
-):
-    """Parse lines of a multiline adjacency list representation of a graph.
-
-    Parameters
-    ----------
-    lines : list or iterator of strings
-        Input data in multiline adjlist format
-
-    create_using : NetworkX graph constructor, optional (default=nx.Graph)
-       Graph type to create. If graph instance, then cleared before populated.
-
-    nodetype : Python type, optional
-       Convert nodes to this type.
-
-    edgetype : Python type, optional
-       Convert edges to this type.
-
-    comments : string, optional
-       Marker for comment lines
-
-    delimiter : string, optional
-       Separator for node labels.  The default is whitespace.
-
-    Returns
-    -------
-    G: NetworkX graph
-        The graph corresponding to the lines in multiline adjacency list format.
-
-    Examples
-    --------
-    >>> lines = [
-    ...     "1 2",
-    ...     "2 {'weight':3, 'name': 'Frodo'}",
-    ...     "3 {}",
-    ...     "2 1",
-    ...     "5 {'weight':6, 'name': 'Saruman'}",
-    ... ]
-    >>> G = nx.parse_multiline_adjlist(iter(lines), nodetype=int)
-    >>> list(G)
-    [1, 2, 3, 5]
-
-    """
-    from ast import literal_eval
-
-    G = nx.empty_graph(0, create_using)
-    for line in lines:
-        p = line.find(comments)
-        if p >= 0:
-            line = line[:p]
-        if not line:
-            continue
-        try:
-            (u, deg) = line.rstrip("\n").split(delimiter)
-            deg = int(deg)
-        except BaseException as err:
-            raise TypeError(f"Failed to read node and degree on line ({line})") from err
-        if nodetype is not None:
-            try:
-                u = nodetype(u)
-            except BaseException as err:
-                raise TypeError(
-                    f"Failed to convert node ({u}) to type {nodetype}"
-                ) from err
-        G.add_node(u)
-        for i in range(deg):
-            while True:
-                try:
-                    line = next(lines)
-                except StopIteration as err:
-                    msg = f"Failed to find neighbor for node ({u})"
-                    raise TypeError(msg) from err
-                p = line.find(comments)
-                if p >= 0:
-                    line = line[:p]
-                if line:
-                    break
-            vlist = line.rstrip("\n").split(delimiter)
-            numb = len(vlist)
-            if numb < 1:
-                continue  # isolated node
-            v = vlist.pop(0)
-            data = "".join(vlist)
-            if nodetype is not None:
-                try:
-                    v = nodetype(v)
-                except BaseException as err:
-                    raise TypeError(
-                        f"Failed to convert node ({v}) to type {nodetype}"
-                    ) from err
-            if edgetype is not None:
-                try:
-                    edgedata = {"weight": edgetype(data)}
-                except BaseException as err:
-                    raise TypeError(
-                        f"Failed to convert edge data ({data}) to type {edgetype}"
-                    ) from err
-            else:
-                try:  # try to evaluate
-                    edgedata = literal_eval(data)
-                except:
-                    edgedata = {}
-            G.add_edge(u, v, **edgedata)
-
-    return G
-
-
-@open_file(0, mode="rb")
-@nx._dispatchable(graphs=None, returns_graph=True)
-def read_multiline_adjlist(
-    path,
-    comments="#",
-    delimiter=None,
-    create_using=None,
-    nodetype=None,
-    edgetype=None,
-    encoding="utf-8",
-):
-    """Read graph in multi-line adjacency list format from path.
-
-    Parameters
-    ----------
-    path : string or file
-       Filename or file handle to read.
-       Filenames ending in .gz or .bz2 will be decompressed.
-
-    create_using : NetworkX graph constructor, optional (default=nx.Graph)
-       Graph type to create. If graph instance, then cleared before populated.
-
-    nodetype : Python type, optional
-       Convert nodes to this type.
-
-    edgetype : Python type, optional
-       Convert edge data to this type.
-
-    comments : string, optional
-       Marker for comment lines
-
-    delimiter : string, optional
-       Separator for node labels.  The default is whitespace.
-
-    Returns
-    -------
-    G: NetworkX graph
-
-    Examples
-    --------
-    >>> G = nx.path_graph(4)
-    >>> nx.write_multiline_adjlist(G, "test.multi_adjlistP4")
-    >>> G = nx.read_multiline_adjlist("test.multi_adjlistP4")
-
-    The path can be a file or a string with the name of the file. If a
-    file s provided, it has to be opened in 'rb' mode.
-
-    >>> fh = open("test.multi_adjlistP4", "rb")
-    >>> G = nx.read_multiline_adjlist(fh)
-
-    Filenames ending in .gz or .bz2 will be compressed.
-
-    >>> nx.write_multiline_adjlist(G, "test.multi_adjlistP4.gz")
-    >>> G = nx.read_multiline_adjlist("test.multi_adjlistP4.gz")
-
-    The optional nodetype is a function to convert node strings to nodetype.
-
-    For example
-
-    >>> G = nx.read_multiline_adjlist("test.multi_adjlistP4", nodetype=int)
-
-    will attempt to convert all nodes to integer type.
-
-    The optional edgetype is a function to convert edge data strings to
-    edgetype.
-
-    >>> G = nx.read_multiline_adjlist("test.multi_adjlistP4")
-
-    The optional create_using parameter is a NetworkX graph container.
-    The default is Graph(), an undirected graph.  To read the data as
-    a directed graph use
-
-    >>> G = nx.read_multiline_adjlist("test.multi_adjlistP4", create_using=nx.DiGraph)
-
-    Notes
-    -----
-    This format does not store graph, node, or edge data.
-
-    See Also
-    --------
-    write_multiline_adjlist
-    """
-    lines = (line.decode(encoding) for line in path)
-    return parse_multiline_adjlist(
-        lines,
-        comments=comments,
-        delimiter=delimiter,
-        create_using=create_using,
-        nodetype=nodetype,
-        edgetype=edgetype,
-    )