ocr-provenance-mcp 1.0.0

package/dist/tools/extraction.js

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+/**
+ * Image Extraction MCP Tools
+ *
+ * Tools for extracting images directly from PDFs using PyMuPDF.
+ * Independent of Datalab - gives full control over image extraction.
+ *
+ * CRITICAL: NEVER use console.log() - stdout is reserved for JSON-RPC protocol.
+ * Use console.error() for all logging.
+ *
+ * @module tools/extraction
+ */
+import { z } from 'zod';
+import * as fs from 'fs';
+import { resolve } from 'path';
+import { requireDatabase, state } from '../server/state.js';
+import { successResult } from '../server/types.js';
+import { MCPError } from '../server/errors.js';
+import { formatResponse, handleError } from './shared.js';
+import { validateInput, sanitizePath } from '../utils/validation.js';
+import { ImageExtractor } from '../services/images/extractor.js';
+import { insertImageBatch, getImagesByDocument, updateImageProvenance, } from '../services/storage/database/image-operations.js';
+import { handleVLMProcess } from './vlm.js';
+import { getProvenanceTracker } from '../services/provenance/index.js';
+import { ProvenanceType } from '../models/provenance.js';
+import { computeHash, computeFileHashSync } from '../utils/hash.js';
+// ===============================================================================
+// VALIDATION SCHEMAS
+// ===============================================================================
+const ExtractImagesInput = z.object({
+    document_id: z.string().optional(),
+    min_size: z.number().int().min(10).max(1000).default(100),
+    max_images: z.number().int().min(1).max(1000).default(500),
+    output_dir: z.string().optional(),
+    auto_vlm_process: z
+        .boolean()
+        .default(false)
+        .describe('Automatically run VLM processing on extracted images'),
+    include_provenance: z
+        .boolean()
+        .default(false)
+        .describe('Include provenance chain for extracted images'),
+    limit: z.number().int().min(1).max(100).default(50),
+    status: z.enum(['pending', 'processing', 'complete', 'failed', 'all']).default('complete'),
+});
+// ═══════════════════════════════════════════════════════════════════════════════
+// EXTRACTION TOOL HANDLERS
+// ═══════════════════════════════════════════════════════════════════════════════
+/**
+ * Handle ocr_extract_images - Extract images from PDF/DOCX files
+ *
+ * If document_id is provided, extracts images from that single document.
+ * If document_id is omitted, batch-extracts images from all OCR-processed documents.
+ */
+export async function handleExtractImages(params) {
+    try {
+        const input = validateInput(ExtractImagesInput, params);
+        const documentId = input.document_id;
+        const minSize = input.min_size ?? 100;
+        const maxImages = input.max_images ?? 500;
+        const { db } = requireDatabase();
+        if (documentId) {
+            // ── Single document mode ──
+            const outputDir = input.output_dir ? sanitizePath(input.output_dir) : undefined;
+            const doc = db.getDocument(documentId);
+            if (!doc) {
+                throw new MCPError('DOCUMENT_NOT_FOUND', `Document not found: ${documentId}`, {
+                    document_id: documentId,
+                });
+            }
+            if (!fs.existsSync(doc.file_path)) {
+                throw new MCPError('PATH_NOT_FOUND', `Document file not found: ${doc.file_path}`, {
+                    file_path: doc.file_path,
+                });
+            }
+            const fileType = doc.file_type.toLowerCase();
+            if (!ImageExtractor.isSupported(doc.file_path)) {
+                throw new MCPError('VALIDATION_ERROR', `Image extraction not supported for file type: ${fileType}. Supported: pdf, docx`, { file_type: fileType, document_id: documentId });
+            }
+            const ocrResult = db.getOCRResultByDocumentId(documentId);
+            if (!ocrResult) {
+                throw new MCPError('VALIDATION_ERROR', `Document has not been OCR processed. Run ocr_process_pending first.`, { document_id: documentId });
+            }
+            const imageOutputDir = outputDir || resolve(state.config.defaultStoragePath, 'images', documentId);
+            console.error(`[INFO] Extracting images from: ${doc.file_path}`);
+            console.error(`[INFO] Output directory: ${imageOutputDir}`);
+            const extractor = new ImageExtractor();
+            const extractedImages = await extractor.extractImages(doc.file_path, {
+                outputDir: imageOutputDir,
+                minSize,
+                maxImages,
+            });
+            console.error(`[INFO] Extracted ${extractedImages.length} images`);
+            const imageRefs = extractedImages.map((img) => ({
+                document_id: documentId,
+                ocr_result_id: ocrResult.id,
+                page_number: img.page,
+                bounding_box: img.bbox,
+                image_index: img.index,
+                format: img.format,
+                dimensions: { width: img.width, height: img.height },
+                extracted_path: img.path,
+                file_size: img.size,
+                context_text: null,
+                provenance_id: null,
+                block_type: null,
+                is_header_footer: false,
+                content_hash: img.path && fs.existsSync(img.path) ? computeFileHashSync(img.path) : null,
+            }));
+            const storedImages = insertImageBatch(db.getConnection(), imageRefs);
+            const tracker = getProvenanceTracker(db);
+            for (const img of storedImages) {
+                try {
+                    const provenanceId = tracker.createProvenance({
+                        type: ProvenanceType.IMAGE,
+                        source_type: 'IMAGE_EXTRACTION',
+                        source_id: ocrResult.provenance_id,
+                        root_document_id: doc.provenance_id,
+                        content_hash: img.content_hash ?? computeHash(img.id),
+                        source_path: img.extracted_path ?? undefined,
+                        processor: `${fileType}-file-extraction`,
+                        processor_version: '1.0.0',
+                        processing_params: {
+                            page_number: img.page_number,
+                            image_index: img.image_index,
+                            format: img.format,
+                            block_type: img.block_type,
+                            is_header_footer: img.is_header_footer,
+                        },
+                        location: {
+                            page_number: img.page_number,
+                        },
+                    });
+                    updateImageProvenance(db.getConnection(), img.id, provenanceId);
+                    img.provenance_id = provenanceId;
+                }
+                catch (error) {
+                    console.error(`[WARN] Failed to create IMAGE provenance for ${img.id}: ${error instanceof Error ? error.message : String(error)}`);
+                    throw error;
+                }
+            }
+            console.error(`[INFO] Stored ${storedImages.length} image records in database`);
+            let vlmResult;
+            if (input.auto_vlm_process && storedImages.length > 0) {
+                try {
+                    const vlmResponse = await handleVLMProcess({ document_id: documentId });
+                    const vlmText = vlmResponse.content?.[0]?.text;
+                    if (vlmText) {
+                        vlmResult = JSON.parse(vlmText).data ?? JSON.parse(vlmText);
+                    }
+                }
+                catch (vlmErr) {
+                    console.error(`[extraction] Auto VLM processing failed: ${vlmErr instanceof Error ? vlmErr.message : String(vlmErr)}`);
+                    vlmResult = {
+                        error: `VLM processing failed: ${vlmErr instanceof Error ? vlmErr.message : String(vlmErr)}`,
+                    };
+                }
+            }
+            let provenanceChains;
+            if (input.include_provenance && storedImages.length > 0) {
+                try {
+                    const chains = {};
+                    for (const img of storedImages) {
+                        if (img.provenance_id) {
+                            chains[img.id] = db.getProvenanceChain(img.provenance_id);
+                        }
+                    }
+                    if (Object.keys(chains).length > 0) {
+                        provenanceChains = chains;
+                    }
+                }
+                catch (provErr) {
+                    console.error(`[extraction] Provenance chain query failed: ${provErr instanceof Error ? provErr.message : String(provErr)}`);
+                }
+            }
+            return formatResponse(successResult({
+                mode: 'single',
+                document_id: documentId,
+                file_name: doc.file_name,
+                output_dir: imageOutputDir,
+                extracted: extractedImages.length,
+                stored: storedImages.length,
+                min_size_filter: minSize,
+                max_images_limit: maxImages,
+                images: storedImages.map((img) => ({
+                    id: img.id,
+                    page: img.page_number,
+                    index: img.image_index,
+                    format: img.format,
+                    dimensions: img.dimensions,
+                    path: img.extracted_path,
+                    file_size: img.file_size,
+                    vlm_status: img.vlm_status,
+                })),
+                ...(vlmResult ? { vlm_processing: vlmResult } : {}),
+                ...(provenanceChains ? { provenance_chains: provenanceChains } : {}),
+                next_steps: [
+                    { tool: 'ocr_vlm_process', description: 'Generate AI descriptions for the extracted images' },
+                ],
+            }));
+        }
+        else {
+            // ── Batch mode (all documents) ──
+            const limit = input.limit ?? 50;
+            const statusFilter = input.status;
+            const documents = db
+                .listDocuments({
+                status: statusFilter === 'all'
+                    ? undefined
+                    : statusFilter ||
+                        'complete',
+                limit,
+            })
+                .filter((d) => ImageExtractor.isSupported(d.file_path));
+            if (documents.length === 0) {
+                return formatResponse(successResult({
+                    mode: 'batch',
+                    processed: 0,
+                    total_images: 0,
+                    message: 'No documents with supported image extraction types found (supported: pdf, docx)',
+                    next_steps: [
+                        { tool: 'ocr_vlm_process', description: 'Run VLM analysis on extracted images' },
+                        { tool: 'ocr_image_stats', description: 'Check image extraction statistics' },
+                    ],
+                }));
+            }
+            const extractor = new ImageExtractor();
+            const results = [];
+            let totalImages = 0;
+            for (const doc of documents) {
+                try {
+                    const existingImages = getImagesByDocument(db.getConnection(), doc.id);
+                    if (existingImages.length > 0) {
+                        results.push({
+                            document_id: doc.id,
+                            file_name: doc.file_name,
+                            images_extracted: 0,
+                            error: `Already has ${existingImages.length} images`,
+                        });
+                        continue;
+                    }
+                    const ocrResult = db.getOCRResultByDocumentId(doc.id);
+                    if (!ocrResult) {
+                        results.push({
+                            document_id: doc.id,
+                            file_name: doc.file_name,
+                            images_extracted: 0,
+                            error: 'No OCR result',
+                        });
+                        continue;
+                    }
+                    if (!fs.existsSync(doc.file_path)) {
+                        results.push({
+                            document_id: doc.id,
+                            file_name: doc.file_name,
+                            images_extracted: 0,
+                            error: 'File not found',
+                        });
+                        continue;
+                    }
+                    const imageOutputDir = resolve(state.config.defaultStoragePath, 'images', doc.id);
+                    console.error(`[INFO] Extracting from: ${doc.file_name}`);
+                    const extractedImages = await extractor.extractImages(doc.file_path, {
+                        outputDir: imageOutputDir,
+                        minSize,
+                        maxImages,
+                    });
+                    const imageRefs = extractedImages.map((img) => ({
+                        document_id: doc.id,
+                        ocr_result_id: ocrResult.id,
+                        page_number: img.page,
+                        bounding_box: img.bbox,
+                        image_index: img.index,
+                        format: img.format,
+                        dimensions: { width: img.width, height: img.height },
+                        extracted_path: img.path,
+                        file_size: img.size,
+                        context_text: null,
+                        provenance_id: null,
+                        block_type: null,
+                        is_header_footer: false,
+                        content_hash: img.path && fs.existsSync(img.path) ? computeFileHashSync(img.path) : null,
+                    }));
+                    if (imageRefs.length > 0) {
+                        const batchImages = insertImageBatch(db.getConnection(), imageRefs);
+                        const ocrProv = ocrResult.provenance_id;
+                        const docProv = doc.provenance_id;
+                        if (ocrProv && docProv) {
+                            const batchTracker = getProvenanceTracker(db);
+                            for (const img of batchImages) {
+                                try {
+                                    const provenanceId = batchTracker.createProvenance({
+                                        type: ProvenanceType.IMAGE,
+                                        source_type: 'IMAGE_EXTRACTION',
+                                        source_id: ocrProv,
+                                        root_document_id: docProv,
+                                        content_hash: img.content_hash ?? computeHash(img.id),
+                                        source_path: img.extracted_path ?? undefined,
+                                        processor: `${doc.file_type}-file-extraction`,
+                                        processor_version: '1.0.0',
+                                        processing_params: {
+                                            page_number: img.page_number,
+                                            image_index: img.image_index,
+                                            format: img.format,
+                                        },
+                                        location: {
+                                            page_number: img.page_number,
+                                        },
+                                    });
+                                    updateImageProvenance(db.getConnection(), img.id, provenanceId);
+                                }
+                                catch (provError) {
+                                    console.error(`[WARN] Failed to create IMAGE provenance for ${img.id}: ${provError instanceof Error ? provError.message : String(provError)}`);
+                                    throw provError;
+                                }
+                            }
+                        }
+                        else {
+                            console.error(`[WARN] Skipping provenance creation for document ${doc.id}: missing ocrProv=${!!ocrProv} docProv=${!!docProv}`);
+                        }
+                    }
+                    totalImages += extractedImages.length;
+                    results.push({
+                        document_id: doc.id,
+                        file_name: doc.file_name,
+                        images_extracted: extractedImages.length,
+                    });
+                    console.error(`[INFO] ${doc.file_name}: ${extractedImages.length} images`);
+                }
+                catch (error) {
+                    const errorMsg = error instanceof Error ? error.message : String(error);
+                    results.push({
+                        document_id: doc.id,
+                        file_name: doc.file_name,
+                        images_extracted: 0,
+                        error: errorMsg,
+                    });
+                    console.error(`[ERROR] ${doc.file_name}: ${errorMsg}`);
+                }
+            }
+            const successful = results.filter((r) => !r.error && r.images_extracted > 0).length;
+            const skipped = results.filter((r) => r.error?.includes('Already has')).length;
+            const failed = results.filter((r) => r.error && !r.error.includes('Already has')).length;
+            let batchVlmResults;
+            if (input.auto_vlm_process && totalImages > 0) {
+                batchVlmResults = [];
+                const docsWithImages = results.filter((r) => r.images_extracted > 0 && !r.error);
+                for (const docResult of docsWithImages) {
+                    try {
+                        await handleVLMProcess({ document_id: docResult.document_id });
+                        batchVlmResults.push({ document_id: docResult.document_id, vlm_status: 'complete' });
+                    }
+                    catch (vlmErr) {
+                        console.error(`[extraction] Auto VLM batch failed for ${docResult.document_id}: ${vlmErr instanceof Error ? vlmErr.message : String(vlmErr)}`);
+                        batchVlmResults.push({ document_id: docResult.document_id, vlm_status: 'failed' });
+                    }
+                }
+            }
+            return formatResponse(successResult({
+                mode: 'batch',
+                processed: documents.length,
+                successful,
+                skipped,
+                failed,
+                total_images: totalImages,
+                results,
+                ...(batchVlmResults ? { vlm_processing: batchVlmResults } : {}),
+                next_steps: [
+                    { tool: 'ocr_vlm_process', description: 'Run VLM analysis on extracted images' },
+                    { tool: 'ocr_image_stats', description: 'Check image extraction statistics' },
+                ],
+            }));
+        }
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+// ═══════════════════════════════════════════════════════════════════════════════
+// TOOL DEFINITIONS FOR MCP REGISTRATION
+// ═══════════════════════════════════════════════════════════════════════════════
+/**
+ * Extraction tools collection for MCP server registration
+ */
+export const extractionTools = {
+    ocr_extract_images: {
+        description: '[PROCESSING] Use to extract images from PDF/DOCX files. Pass document_id for single file or omit for batch. Follow with ocr_vlm_process.',
+        inputSchema: {
+            document_id: z.string().optional().describe('Document ID (omit for batch extraction of all documents)'),
+            min_size: z
+                .number()
+                .int()
+                .min(10)
+                .max(1000)
+                .default(100)
+                .describe('Minimum image dimension in pixels'),
+            max_images: z
+                .number()
+                .int()
+                .min(1)
+                .max(1000)
+                .default(500)
+                .describe('Maximum images to extract (per document in batch mode)'),
+            output_dir: z
+                .string()
+                .optional()
+                .describe('Custom output directory (single document mode only)'),
+            auto_vlm_process: z
+                .boolean()
+                .default(false)
+                .describe('Auto-trigger VLM processing after image extraction'),
+            include_provenance: z
+                .boolean()
+                .default(false)
+                .describe('Include provenance chain (single document mode only)'),
+            limit: z.number().int().min(1).max(100).default(50).describe('Maximum documents to process (batch mode only)'),
+            status: z
+                .enum(['pending', 'processing', 'complete', 'failed', 'all'])
+                .default('complete')
+                .describe('Filter by document status (batch mode only)'),
+        },
+        handler: handleExtractImages,
+    },
+};
+//# sourceMappingURL=extraction.js.map

package/dist/tools/extraction.js.map

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package/dist/tools/file-management.d.ts

@@ -0,0 +1,14 @@
+/**
+ * File Management MCP Tools
+ *
+ * Tools for uploading, listing, retrieving, downloading, and deleting
+ * files in Datalab cloud storage.
+ *
+ * CRITICAL: NEVER use console.log() - stdout is reserved for JSON-RPC protocol.
+ * Use console.error() for all logging.
+ *
+ * @module tools/file-management
+ */
+import { type ToolDefinition } from './shared.js';
+export declare const fileManagementTools: Record<string, ToolDefinition>;
+//# sourceMappingURL=file-management.d.ts.map

package/dist/tools/file-management.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"file-management.d.ts","sourceRoot":"","sources":["../../src/tools/file-management.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAMH,OAAO,EAIL,KAAK,cAAc,EACpB,MAAM,aAAa,CAAC;AA+jBrB,eAAO,MAAM,mBAAmB,EAAE,MAAM,CAAC,MAAM,EAAE,cAAc,CAqC9D,CAAC"}