ocr-provenance-mcp 1.0.0

package/dist/tools/config.d.ts

@@ -0,0 +1,19 @@
+/**
+ * Configuration Management MCP Tools
+ *
+ * NEW tools created for Task 22.
+ * Tools: ocr_config_get, ocr_config_set
+ *
+ * CRITICAL: NEVER use console.log() - stdout is reserved for JSON-RPC protocol.
+ * Use console.error() for all logging.
+ *
+ * @module tools/config
+ */
+import { type ToolResponse, type ToolDefinition } from './shared.js';
+export declare function handleConfigGet(params: Record<string, unknown>): Promise<ToolResponse>;
+export declare function handleConfigSet(params: Record<string, unknown>): Promise<ToolResponse>;
+/**
+ * Config tools collection for MCP server registration
+ */
+export declare const configTools: Record<string, ToolDefinition>;
+//# sourceMappingURL=config.d.ts.map

package/dist/tools/config.d.ts.map

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package/dist/tools/config.js

@@ -0,0 +1,213 @@
+/**
+ * Configuration Management MCP Tools
+ *
+ * NEW tools created for Task 22.
+ * Tools: ocr_config_get, ocr_config_set
+ *
+ * CRITICAL: NEVER use console.log() - stdout is reserved for JSON-RPC protocol.
+ * Use console.error() for all logging.
+ *
+ * @module tools/config
+ */
+import { z } from 'zod';
+import { state, getConfig, updateConfig, hasDatabase, requireDatabase } from '../server/state.js';
+import { persistConfigValue } from '../utils/config-persistence.js';
+import { successResult } from '../server/types.js';
+import { validateInput, ConfigGetInput, ConfigSetInput, ConfigKey } from '../utils/validation.js';
+import { validationError } from '../server/errors.js';
+import { formatResponse, handleError } from './shared.js';
+// ═══════════════════════════════════════════════════════════════════════════════
+// CONSTANTS
+// ═══════════════════════════════════════════════════════════════════════════════
+/** Map config keys to their state property names */
+const CONFIG_KEY_MAP = {
+    datalab_default_mode: 'defaultOCRMode',
+    datalab_max_concurrent: 'maxConcurrent',
+    embedding_batch_size: 'embeddingBatchSize',
+    embedding_device: 'embeddingDevice',
+    chunk_size: 'chunkSize',
+    chunk_overlap_percent: 'chunkOverlapPercent',
+    max_chunk_size: 'maxChunkSize',
+    auto_cluster_enabled: 'autoClusterEnabled',
+    auto_cluster_threshold: 'autoClusterThreshold',
+    auto_cluster_algorithm: 'autoClusterAlgorithm',
+};
+function getConfigValue(key) {
+    const config = getConfig();
+    const mappedKey = CONFIG_KEY_MAP[key];
+    if (mappedKey && mappedKey in config) {
+        return config[mappedKey];
+    }
+    throw validationError(`Unknown configuration key: ${key}`, { key });
+}
+/** Validation rules per config key */
+const CONFIG_VALIDATORS = {
+    datalab_default_mode: (v) => {
+        if (typeof v !== 'string' || !['fast', 'balanced', 'accurate'].includes(v))
+            throw validationError('datalab_default_mode must be "fast", "balanced", or "accurate"', {
+                value: v,
+            });
+    },
+    datalab_max_concurrent: (v) => {
+        if (typeof v !== 'number' || v < 1 || v > 10)
+            throw validationError('datalab_max_concurrent must be a number between 1 and 10', {
+                value: v,
+            });
+    },
+    embedding_batch_size: (v) => {
+        if (typeof v !== 'number' || v < 1 || v > 1024)
+            throw validationError('embedding_batch_size must be a number between 1 and 1024', {
+                value: v,
+            });
+    },
+    embedding_device: (v) => {
+        if (typeof v !== 'string')
+            throw validationError('embedding_device must be a string', { value: v });
+    },
+    chunk_size: (v) => {
+        if (typeof v !== 'number' || v < 100 || v > 10000)
+            throw validationError('chunk_size must be a number between 100 and 10000', { value: v });
+    },
+    chunk_overlap_percent: (v) => {
+        if (typeof v !== 'number' || v < 0 || v > 50)
+            throw validationError('chunk_overlap_percent must be a number between 0 and 50', {
+                value: v,
+            });
+    },
+    max_chunk_size: (v) => {
+        if (typeof v !== 'number' || v < 1000 || v > 50000)
+            throw validationError('max_chunk_size must be a number between 1000 and 50000', {
+                value: v,
+            });
+    },
+    auto_cluster_enabled: (v) => {
+        if (typeof v !== 'boolean')
+            throw validationError('auto_cluster_enabled must be a boolean', { value: v });
+    },
+    auto_cluster_threshold: (v) => {
+        if (typeof v !== 'number' || v < 2 || v > 10000)
+            throw validationError('auto_cluster_threshold must be a number between 2 and 10000', {
+                value: v,
+            });
+    },
+    auto_cluster_algorithm: (v) => {
+        if (typeof v !== 'string' || !['hdbscan', 'agglomerative', 'kmeans'].includes(v))
+            throw validationError('auto_cluster_algorithm must be "hdbscan", "agglomerative", or "kmeans"', {
+                value: v,
+            });
+    },
+};
+function setConfigValue(key, value) {
+    const mappedKey = CONFIG_KEY_MAP[key];
+    if (!mappedKey) {
+        throw validationError(`Unknown configuration key: ${key}`, { key });
+    }
+    const validator = CONFIG_VALIDATORS[key];
+    if (validator)
+        validator(value);
+    updateConfig({ [mappedKey]: value });
+}
+// ═══════════════════════════════════════════════════════════════════════════════
+// CONFIG TOOL HANDLERS
+// ═══════════════════════════════════════════════════════════════════════════════
+export async function handleConfigGet(params) {
+    try {
+        const input = validateInput(ConfigGetInput, params);
+        const config = getConfig();
+        const configNextSteps = [
+            { tool: 'ocr_config_set', description: 'Change a configuration setting' },
+            { tool: 'ocr_db_stats', description: 'Check database statistics' },
+        ];
+        // Return specific key if requested
+        if (input.key) {
+            const value = getConfigValue(input.key);
+            return formatResponse(successResult({ key: input.key, value, next_steps: configNextSteps }));
+        }
+        // Return full configuration
+        return formatResponse(successResult({
+            // Mutable configuration values
+            datalab_default_mode: config.defaultOCRMode,
+            datalab_max_concurrent: config.maxConcurrent,
+            embedding_batch_size: config.embeddingBatchSize,
+            storage_path: config.defaultStoragePath,
+            current_database: state.currentDatabaseName,
+            // Immutable values (informational only)
+            embedding_model: 'nomic-embed-text-v1.5',
+            embedding_dimensions: 768,
+            hash_algorithm: 'sha256',
+            // Mutable config values from state
+            embedding_device: config.embeddingDevice,
+            chunk_size: config.chunkSize,
+            chunk_overlap_percent: config.chunkOverlapPercent,
+            max_chunk_size: config.maxChunkSize,
+            // Auto-clustering config
+            auto_cluster_enabled: config.autoClusterEnabled ?? false,
+            auto_cluster_threshold: config.autoClusterThreshold ?? 10,
+            auto_cluster_algorithm: config.autoClusterAlgorithm ?? 'hdbscan',
+            next_steps: configNextSteps,
+        }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+export async function handleConfigSet(params) {
+    try {
+        const input = validateInput(ConfigSetInput, params);
+        // Apply the configuration change in memory
+        setConfigValue(input.key, input.value);
+        // Persist to database if one is selected
+        let persisted = false;
+        if (hasDatabase()) {
+            try {
+                const { db } = requireDatabase();
+                const conn = db.getConnection();
+                persistConfigValue(conn, input.key, input.value);
+                persisted = true;
+            }
+            catch (persistErr) {
+                console.error(`[config] Failed to persist config to database: ${persistErr instanceof Error ? persistErr.message : String(persistErr)}`);
+            }
+        }
+        return formatResponse(successResult({
+            key: input.key,
+            value: input.value,
+            updated: true,
+            persisted,
+            next_steps: [
+                { tool: 'ocr_config_get', description: 'Verify the updated configuration' },
+                { tool: 'ocr_process_pending', description: 'Process documents with new settings' },
+                { tool: 'ocr_db_stats', description: 'Check database overview and statistics' },
+            ],
+        }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+// Config persistence functions are in src/utils/config-persistence.ts
+// to avoid circular dependency between tools/config.ts and server/state.ts
+// ═══════════════════════════════════════════════════════════════════════════════
+// TOOL DEFINITIONS FOR MCP REGISTRATION
+// ═══════════════════════════════════════════════════════════════════════════════
+/**
+ * Config tools collection for MCP server registration
+ */
+export const configTools = {
+    ocr_config_get: {
+        description: '[STATUS] Use to view current system configuration (OCR mode, chunk size, embedding settings, auto-clustering). Returns all or one specific key.',
+        inputSchema: {
+            key: ConfigKey.optional().describe('Specific config key to retrieve'),
+        },
+        handler: handleConfigGet,
+    },
+    ocr_config_set: {
+        description: '[SETUP] Use to change a system configuration setting (OCR mode, chunk size, concurrency, auto-clustering). Returns updated value.',
+        inputSchema: {
+            key: ConfigKey.describe('Configuration key to update'),
+            value: z.union([z.string(), z.number(), z.boolean()]).describe('New value'),
+        },
+        handler: handleConfigSet,
+    },
+};
+//# sourceMappingURL=config.js.map

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package/dist/tools/database.d.ts

@@ -0,0 +1,62 @@
+/**
+ * Database Management MCP Tools
+ *
+ * Extracted from src/index.ts Task 19.
+ * Tools: ocr_db_create, ocr_db_list, ocr_db_select, ocr_db_stats, ocr_db_delete
+ *
+ * CRITICAL: NEVER use console.log() - stdout is reserved for JSON-RPC protocol.
+ * Use console.error() for all logging.
+ *
+ * @module tools/database
+ */
+import { type ToolDefinition } from './shared.js';
+/**
+ * Handle ocr_db_create - Create a new database
+ */
+export declare function handleDatabaseCreate(params: Record<string, unknown>): Promise<{
+    content: Array<{
+        type: 'text';
+        text: string;
+    }>;
+}>;
+/**
+ * Handle ocr_db_list - List all databases
+ */
+export declare function handleDatabaseList(params: Record<string, unknown>): Promise<{
+    content: Array<{
+        type: 'text';
+        text: string;
+    }>;
+}>;
+/**
+ * Handle ocr_db_select - Select active database
+ */
+export declare function handleDatabaseSelect(params: Record<string, unknown>): Promise<{
+    content: Array<{
+        type: 'text';
+        text: string;
+    }>;
+}>;
+/**
+ * Handle ocr_db_stats - Get database statistics
+ */
+export declare function handleDatabaseStats(params: Record<string, unknown>): Promise<{
+    content: Array<{
+        type: 'text';
+        text: string;
+    }>;
+}>;
+/**
+ * Handle ocr_db_delete - Delete a database
+ */
+export declare function handleDatabaseDelete(params: Record<string, unknown>): Promise<{
+    content: Array<{
+        type: 'text';
+        text: string;
+    }>;
+}>;
+/**
+ * Database tools collection for MCP server registration
+ */
+export declare const databaseTools: Record<string, ToolDefinition>;
+//# sourceMappingURL=database.d.ts.map

package/dist/tools/database.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/database.js

@@ -0,0 +1,288 @@
+/**
+ * Database Management MCP Tools
+ *
+ * Extracted from src/index.ts Task 19.
+ * Tools: ocr_db_create, ocr_db_list, ocr_db_select, ocr_db_stats, ocr_db_delete
+ *
+ * CRITICAL: NEVER use console.log() - stdout is reserved for JSON-RPC protocol.
+ * Use console.error() for all logging.
+ *
+ * @module tools/database
+ */
+import { z } from 'zod';
+import { DatabaseService } from '../services/storage/database/index.js';
+import { VectorService } from '../services/storage/vector.js';
+import { state, requireDatabase, selectDatabase, createDatabase, deleteDatabase, getDefaultStoragePath, } from '../server/state.js';
+import { successResult } from '../server/types.js';
+import { validateInput, DatabaseCreateInput, DatabaseListInput, DatabaseSelectInput, DatabaseStatsInput, DatabaseDeleteInput, } from '../utils/validation.js';
+import { formatResponse, handleError } from './shared.js';
+// ═══════════════════════════════════════════════════════════════════════════════
+// DATABASE TOOL HANDLERS
+// ═══════════════════════════════════════════════════════════════════════════════
+/**
+ * Handle ocr_db_create - Create a new database
+ */
+export async function handleDatabaseCreate(params) {
+    try {
+        const input = validateInput(DatabaseCreateInput, params);
+        const db = createDatabase(input.name, input.description, input.storage_path);
+        const path = db.getPath();
+        return formatResponse(successResult({
+            name: input.name,
+            path,
+            created: true,
+            description: input.description,
+            next_steps: [
+                { tool: 'ocr_db_select', description: 'Select this database to start using it' },
+                { tool: 'ocr_ingest_files', description: 'Ingest files into the new database' },
+            ],
+        }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+/**
+ * Handle ocr_db_list - List all databases
+ */
+export async function handleDatabaseList(params) {
+    try {
+        const input = validateInput(DatabaseListInput, params);
+        const storagePath = getDefaultStoragePath();
+        const databases = DatabaseService.list(storagePath);
+        const items = databases.map((dbInfo) => {
+            const item = {
+                name: dbInfo.name,
+                path: dbInfo.path,
+                size_bytes: dbInfo.size_bytes,
+                created_at: dbInfo.created_at,
+                modified_at: dbInfo.last_modified_at,
+            };
+            if (input.include_stats) {
+                let statsDb = null;
+                try {
+                    statsDb = DatabaseService.open(dbInfo.name, storagePath);
+                    const stats = statsDb.getStats();
+                    item.document_count = stats.total_documents;
+                    item.chunk_count = stats.total_chunks;
+                    item.embedding_count = stats.total_embeddings;
+                }
+                catch (err) {
+                    item.stats_error = err instanceof Error ? err.message : String(err);
+                }
+                finally {
+                    statsDb?.close();
+                }
+            }
+            return item;
+        });
+        return formatResponse(successResult({
+            databases: items,
+            total: items.length,
+            storage_path: storagePath,
+            next_steps: [
+                { tool: 'ocr_db_select', description: 'Select a database to work with' },
+                { tool: 'ocr_db_create', description: 'Create a new database' },
+                { tool: 'ocr_search_cross_db', description: 'Search across all databases' },
+            ],
+        }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+/**
+ * Handle ocr_db_select - Select active database
+ */
+export async function handleDatabaseSelect(params) {
+    try {
+        const input = validateInput(DatabaseSelectInput, params);
+        selectDatabase(input.database_name);
+        const { db, vector } = requireDatabase();
+        const stats = db.getStats();
+        return formatResponse(successResult({
+            name: input.database_name,
+            path: db.getPath(),
+            selected: true,
+            stats: {
+                document_count: stats.total_documents,
+                chunk_count: stats.total_chunks,
+                embedding_count: stats.total_embeddings,
+                vector_count: vector.getVectorCount(),
+            },
+            next_steps: [
+                { tool: 'ocr_document_list', description: 'Browse documents in this database' },
+                { tool: 'ocr_search', description: 'Search for content across all documents' },
+                { tool: 'ocr_db_stats', description: 'Get detailed statistics for this database' },
+            ],
+        }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+/**
+ * Build stats response from database and vector services
+ */
+function buildStatsResponse(db, vector) {
+    const stats = db.getStats();
+    const conn = db.getConnection();
+    // Additional overview queries
+    const fileTypeDist = conn.prepare("SELECT file_type, COUNT(*) as count FROM documents GROUP BY file_type ORDER BY count DESC").all();
+    const dateRange = conn.prepare("SELECT MIN(created_at) as earliest, MAX(created_at) as latest FROM documents").get();
+    const statusDist = conn.prepare("SELECT status, COUNT(*) as count FROM documents GROUP BY status").all();
+    const qualityStats = conn.prepare(`SELECT AVG(parse_quality_score) as avg_quality,
+            MIN(parse_quality_score) as min_quality,
+            MAX(parse_quality_score) as max_quality
+     FROM ocr_results WHERE parse_quality_score IS NOT NULL`).get();
+    const clusterSummary = conn.prepare(`SELECT c.id, c.label, c.document_count, c.classification_tag
+     FROM clusters c ORDER BY c.document_count DESC LIMIT 5`).all();
+    const recentDocs = conn.prepare("SELECT file_name, file_type, status, page_count, created_at FROM documents ORDER BY created_at DESC LIMIT 5").all();
+    const totalChunks = conn.prepare("SELECT COUNT(*) as count FROM chunks").get();
+    const totalEmbeddings = conn.prepare("SELECT COUNT(*) as count FROM embeddings").get();
+    const totalImages = conn.prepare("SELECT COUNT(*) as count FROM images").get();
+    const ftsStatus = conn.prepare("SELECT COUNT(*) as count FROM fts_index_metadata").get();
+    return {
+        name: db.getName(),
+        path: db.getPath(),
+        size_bytes: stats.storage_size_bytes,
+        document_count: stats.total_documents,
+        chunk_count: stats.total_chunks,
+        embedding_count: stats.total_embeddings,
+        image_count: stats.total_images,
+        provenance_count: stats.total_provenance,
+        ocr_result_count: stats.total_ocr_results,
+        pending_documents: stats.documents_by_status.pending,
+        processing_documents: stats.documents_by_status.processing,
+        complete_documents: stats.documents_by_status.complete,
+        failed_documents: stats.documents_by_status.failed,
+        extraction_count: stats.total_extractions,
+        form_fill_count: stats.total_form_fills,
+        comparison_count: stats.total_comparisons,
+        cluster_count: stats.total_clusters,
+        vector_count: vector.getVectorCount(),
+        ocr_quality: stats.ocr_quality,
+        costs: stats.costs,
+        overview: {
+            total_documents: stats.total_documents,
+            total_chunks: totalChunks.count,
+            total_embeddings: totalEmbeddings.count,
+            total_images: totalImages.count,
+            file_type_distribution: fileTypeDist,
+            document_date_range: dateRange ?? null,
+            status_distribution: statusDist,
+            quality_stats: qualityStats ?? null,
+            top_clusters: clusterSummary,
+            recent_documents: recentDocs,
+            fts_indexed: ftsStatus.count > 0,
+        },
+    };
+}
+/**
+ * Handle ocr_db_stats - Get database statistics
+ */
+export async function handleDatabaseStats(params) {
+    try {
+        const input = validateInput(DatabaseStatsInput, params);
+        const statsNextSteps = [
+            { tool: 'ocr_document_list', description: 'Browse documents in this database' },
+            { tool: 'ocr_search', description: 'Search for content across documents' },
+            { tool: 'ocr_report_overview', description: 'Get quality and corpus analytics' },
+            { tool: 'ocr_benchmark_compare', description: 'Benchmark search modes against each other' },
+        ];
+        // If database_name is provided, temporarily open that database
+        if (input.database_name && input.database_name !== state.currentDatabaseName) {
+            const storagePath = getDefaultStoragePath();
+            const db = DatabaseService.open(input.database_name, storagePath);
+            try {
+                const vector = new VectorService(db.getConnection());
+                const result = buildStatsResponse(db, vector);
+                return formatResponse(successResult({ ...result, next_steps: statsNextSteps }));
+            }
+            finally {
+                db.close();
+            }
+        }
+        // Use current database
+        const { db, vector } = requireDatabase();
+        const result = buildStatsResponse(db, vector);
+        return formatResponse(successResult({ ...result, next_steps: statsNextSteps }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+/**
+ * Handle ocr_db_delete - Delete a database
+ */
+export async function handleDatabaseDelete(params) {
+    try {
+        const input = validateInput(DatabaseDeleteInput, params);
+        deleteDatabase(input.database_name);
+        return formatResponse(successResult({
+            name: input.database_name,
+            deleted: true,
+            next_steps: [
+                { tool: 'ocr_db_list', description: 'List remaining databases' },
+            ],
+        }));
+    }
+    catch (error) {
+        return handleError(error);
+    }
+}
+// ═══════════════════════════════════════════════════════════════════════════════
+// TOOL DEFINITIONS FOR MCP REGISTRATION
+// ═══════════════════════════════════════════════════════════════════════════════
+/**
+ * Database tools collection for MCP server registration
+ */
+export const databaseTools = {
+    ocr_db_create: {
+        description: '[SETUP] Use to create a new database before ingesting documents. Returns database name and path. Follow with ocr_db_select, then ocr_ingest_files or ocr_ingest_directory.',
+        inputSchema: {
+            name: z
+                .string()
+                .min(1)
+                .max(64)
+                .regex(/^[a-zA-Z0-9_-]+$/)
+                .describe('Database name (alphanumeric, underscore, hyphen only)'),
+            description: z.string().max(500).optional().describe('Optional description for the database'),
+            storage_path: z.string().optional().describe('Optional storage path override'),
+        },
+        handler: handleDatabaseCreate,
+    },
+    ocr_db_list: {
+        description: '[ESSENTIAL] Use first to discover available databases. Returns names, sizes, and document counts. Follow with ocr_db_select to choose one.',
+        inputSchema: {
+            include_stats: z.boolean().default(false).describe('Include document/chunk/embedding counts'),
+        },
+        handler: handleDatabaseList,
+    },
+    ocr_db_select: {
+        description: '[ESSENTIAL] Use to switch active database. All subsequent tools operate on the selected database. Returns basic stats. Prerequisite for most tools.',
+        inputSchema: {
+            database_name: z.string().min(1).describe('Name of the database to select'),
+        },
+        handler: handleDatabaseSelect,
+    },
+    ocr_db_stats: {
+        description: '[ESSENTIAL] Use to check database size, document counts, quality stats, and recent activity. Returns comprehensive overview including file types, clusters, and costs.',
+        inputSchema: {
+            database_name: z
+                .string()
+                .optional()
+                .describe('Database name (uses current if not specified)'),
+        },
+        handler: handleDatabaseStats,
+    },
+    ocr_db_delete: {
+        description: '[DESTRUCTIVE] Use to permanently delete a database and all its data. Returns confirmation. Requires confirm=true.',
+        inputSchema: {
+            database_name: z.string().min(1).describe('Name of the database to delete'),
+            confirm: z.literal(true).describe('Must be true to confirm deletion'),
+        },
+        handler: handleDatabaseDelete,
+    },
+};
+//# sourceMappingURL=database.js.map

package/dist/tools/database.js.map

@@ -0,0 +1 @@
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