ocr-provenance-mcp 1.0.0

package/dist/services/storage/migrations/schema-definitions.js.map

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package/dist/services/storage/migrations/schema-helpers.d.ts

@@ -0,0 +1,50 @@
+/**
+ * Schema Helper Functions for Database Migrations
+ *
+ * Contains helper functions for configuring pragmas, creating tables,
+ * indexes, and initializing database metadata.
+ *
+ * @module migrations/schema-helpers
+ */
+import type Database from 'better-sqlite3';
+/**
+ * Configure database pragmas for optimal performance and safety
+ * @param db - Database instance
+ */
+export declare function configurePragmas(db: Database.Database): void;
+/**
+ * Create schema version table and initialize if needed
+ * @param db - Database instance
+ */
+export declare function initializeSchemaVersion(db: Database.Database): void;
+/**
+ * Create all tables in dependency order
+ * @param db - Database instance
+ */
+export declare function createTables(db: Database.Database): void;
+/**
+ * Create sqlite-vec virtual table for vector storage
+ * @param db - Database instance
+ */
+export declare function createVecTable(db: Database.Database): void;
+/**
+ * Create all required indexes
+ * @param db - Database instance
+ */
+export declare function createIndexes(db: Database.Database): void;
+/**
+ * Create FTS5 full-text search tables and triggers
+ * @param db - Database instance
+ */
+export declare function createFTSTables(db: Database.Database): void;
+/**
+ * Initialize database metadata with default values
+ * @param db - Database instance
+ */
+export declare function initializeDatabaseMetadata(db: Database.Database): void;
+/**
+ * Load the sqlite-vec extension
+ * @param db - Database instance
+ */
+export declare function loadSqliteVecExtension(db: Database.Database): void;
+//# sourceMappingURL=schema-helpers.d.ts.map

package/dist/services/storage/migrations/schema-helpers.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/storage/migrations/schema-helpers.js

@@ -0,0 +1,176 @@
+/**
+ * Schema Helper Functions for Database Migrations
+ *
+ * Contains helper functions for configuring pragmas, creating tables,
+ * indexes, and initializing database metadata.
+ *
+ * @module migrations/schema-helpers
+ */
+import { createRequire } from 'module';
+import { MigrationError } from './types.js';
+import { DATABASE_PRAGMAS, CREATE_SCHEMA_VERSION_TABLE, CREATE_VEC_EMBEDDINGS_TABLE, CREATE_CHUNKS_FTS_TABLE, CREATE_FTS_TRIGGERS, CREATE_FTS_INDEX_METADATA, CREATE_VLM_FTS_TABLE, CREATE_VLM_FTS_TRIGGERS, CREATE_EXTRACTIONS_FTS_TABLE, CREATE_EXTRACTIONS_FTS_TRIGGERS, CREATE_DOCUMENTS_FTS_TABLE, CREATE_DOCUMENTS_FTS_TRIGGERS, CREATE_INDEXES, TABLE_DEFINITIONS, SCHEMA_VERSION, } from './schema-definitions.js';
+// Create require function for CommonJS modules in ESM context
+const require = createRequire(import.meta.url);
+/**
+ * Configure database pragmas for optimal performance and safety
+ * @param db - Database instance
+ */
+export function configurePragmas(db) {
+    for (const pragma of DATABASE_PRAGMAS) {
+        try {
+            db.exec(pragma);
+        }
+        catch (error) {
+            throw new MigrationError(`Failed to set pragma: ${pragma}`, 'pragma', undefined, error);
+        }
+    }
+}
+/**
+ * Create schema version table and initialize if needed
+ * @param db - Database instance
+ */
+export function initializeSchemaVersion(db) {
+    try {
+        db.exec(CREATE_SCHEMA_VERSION_TABLE);
+        const now = new Date().toISOString();
+        const stmt = db.prepare(`
+      INSERT OR IGNORE INTO schema_version (id, version, created_at, updated_at)
+      VALUES (?, ?, ?, ?)
+    `);
+        stmt.run(1, SCHEMA_VERSION, now, now);
+    }
+    catch (error) {
+        throw new MigrationError('Failed to initialize schema version table', 'create_table', 'schema_version', error);
+    }
+}
+/**
+ * Create all tables in dependency order
+ * @param db - Database instance
+ */
+export function createTables(db) {
+    for (const table of TABLE_DEFINITIONS) {
+        try {
+            db.exec(table.sql);
+        }
+        catch (error) {
+            throw new MigrationError(`Failed to create table: ${table.name}`, 'create_table', table.name, error);
+        }
+    }
+}
+/**
+ * Create sqlite-vec virtual table for vector storage
+ * @param db - Database instance
+ */
+export function createVecTable(db) {
+    try {
+        db.exec(CREATE_VEC_EMBEDDINGS_TABLE);
+    }
+    catch (error) {
+        throw new MigrationError('Failed to create vec_embeddings virtual table. Ensure sqlite-vec extension is loaded.', 'create_virtual_table', 'vec_embeddings', error);
+    }
+}
+/**
+ * Create all required indexes
+ * @param db - Database instance
+ */
+export function createIndexes(db) {
+    for (const indexSql of CREATE_INDEXES) {
+        try {
+            db.exec(indexSql);
+        }
+        catch (error) {
+            // Extract index name from SQL for error message
+            const match = indexSql.match(/CREATE INDEX IF NOT EXISTS (\w+)/);
+            const indexName = match ? match[1] : 'unknown';
+            throw new MigrationError(`Failed to create index: ${indexName}`, 'create_index', indexName, error);
+        }
+    }
+}
+/**
+ * Create FTS5 full-text search tables and triggers
+ * @param db - Database instance
+ */
+export function createFTSTables(db) {
+    try {
+        // Chunks FTS5
+        db.exec(CREATE_CHUNKS_FTS_TABLE);
+        for (const trigger of CREATE_FTS_TRIGGERS) {
+            db.exec(trigger);
+        }
+        db.exec(CREATE_FTS_INDEX_METADATA);
+        // Initialize metadata row for chunks FTS (id=1)
+        const now = new Date().toISOString();
+        db.prepare(`
+      INSERT OR IGNORE INTO fts_index_metadata (id, last_rebuild_at, chunks_indexed, tokenizer, schema_version, content_hash)
+      VALUES (1, ?, 0, 'porter unicode61', ${SCHEMA_VERSION}, NULL)
+    `).run(now);
+        // VLM FTS5
+        db.exec(CREATE_VLM_FTS_TABLE);
+        for (const trigger of CREATE_VLM_FTS_TRIGGERS) {
+            db.exec(trigger);
+        }
+        // Initialize metadata row for VLM FTS (id=2)
+        db.prepare(`
+      INSERT OR IGNORE INTO fts_index_metadata (id, last_rebuild_at, chunks_indexed, tokenizer, schema_version, content_hash)
+      VALUES (2, ?, 0, 'porter unicode61', ${SCHEMA_VERSION}, NULL)
+    `).run(now);
+        // Extractions FTS5
+        db.exec(CREATE_EXTRACTIONS_FTS_TABLE);
+        for (const trigger of CREATE_EXTRACTIONS_FTS_TRIGGERS) {
+            db.exec(trigger);
+        }
+        // Initialize metadata row for extractions FTS (id=3)
+        db.prepare(`
+      INSERT OR IGNORE INTO fts_index_metadata (id, last_rebuild_at, chunks_indexed, tokenizer, schema_version, content_hash)
+      VALUES (3, ?, 0, 'porter unicode61', ${SCHEMA_VERSION}, NULL)
+    `).run(now);
+        // Documents FTS5 (v30)
+        db.exec(CREATE_DOCUMENTS_FTS_TABLE);
+        for (const trigger of CREATE_DOCUMENTS_FTS_TRIGGERS) {
+            db.exec(trigger);
+        }
+    }
+    catch (error) {
+        throw new MigrationError('Failed to create FTS5 tables', 'create_table', 'chunks_fts', error);
+    }
+}
+/**
+ * Initialize database metadata with default values
+ * @param db - Database instance
+ */
+export function initializeDatabaseMetadata(db) {
+    try {
+        const now = new Date().toISOString();
+        const stmt = db.prepare(`
+      INSERT OR IGNORE INTO database_metadata (
+        id, database_name, database_version, created_at, last_modified_at,
+        total_documents, total_ocr_results, total_chunks, total_embeddings
+      )
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
+    `);
+        stmt.run(1, 'ocr-provenance-mcp', '1.0.0', now, now, 0, 0, 0, 0);
+    }
+    catch (error) {
+        throw new MigrationError('Failed to initialize database metadata', 'insert', 'database_metadata', error);
+    }
+}
+/**
+ * Load the sqlite-vec extension
+ * @param db - Database instance
+ */
+export function loadSqliteVecExtension(db) {
+    try {
+        // The sqlite-vec extension is typically loaded via the loadExtension method
+        // The exact path depends on the installation
+        // Common locations: node_modules/sqlite-vec/dist/vec0.so (Linux)
+        //                   node_modules/sqlite-vec/dist/vec0.dylib (macOS)
+        //                   node_modules/sqlite-vec/dist/vec0.dll (Windows)
+        // First try to use the sqlite-vec npm package's built-in loader
+        const sqliteVec = require('sqlite-vec');
+        sqliteVec.load(db);
+    }
+    catch (error) {
+        throw new MigrationError('Failed to load sqlite-vec extension. Ensure sqlite-vec is installed: npm install sqlite-vec', 'load_extension', 'sqlite-vec', error);
+    }
+}
+//# sourceMappingURL=schema-helpers.js.map

package/dist/services/storage/migrations/schema-helpers.js.map

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package/dist/services/storage/migrations/types.d.ts

@@ -0,0 +1,15 @@
+/**
+ * Type definitions and error classes for database migrations
+ *
+ * @module migrations/types
+ */
+/**
+ * Error class for database migration failures
+ */
+export declare class MigrationError extends Error {
+    readonly operation: string;
+    readonly tableName?: string | undefined;
+    readonly cause?: unknown | undefined;
+    constructor(message: string, operation: string, tableName?: string | undefined, cause?: unknown | undefined);
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/services/storage/migrations/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../../src/services/storage/migrations/types.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH;;GAEG;AACH,qBAAa,cAAe,SAAQ,KAAK;aAGrB,SAAS,EAAE,MAAM;aACjB,SAAS,CAAC,EAAE,MAAM;aAClB,KAAK,CAAC,EAAE,OAAO;gBAH/B,OAAO,EAAE,MAAM,EACC,SAAS,EAAE,MAAM,EACjB,SAAS,CAAC,EAAE,MAAM,YAAA,EAClB,KAAK,CAAC,EAAE,OAAO,YAAA;CAKlC"}

package/dist/services/storage/migrations/types.js

@@ -0,0 +1,21 @@
+/**
+ * Type definitions and error classes for database migrations
+ *
+ * @module migrations/types
+ */
+/**
+ * Error class for database migration failures
+ */
+export class MigrationError extends Error {
+    operation;
+    tableName;
+    cause;
+    constructor(message, operation, tableName, cause) {
+        super(message);
+        this.operation = operation;
+        this.tableName = tableName;
+        this.cause = cause;
+        this.name = 'MigrationError';
+    }
+}
+//# sourceMappingURL=types.js.map

package/dist/services/storage/migrations/types.js.map

@@ -0,0 +1 @@
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package/dist/services/storage/migrations/verification.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Schema Verification Functions
+ *
+ * Contains functions to verify database schema integrity.
+ *
+ * @module migrations/verification
+ */
+import type Database from 'better-sqlite3';
+/**
+ * Verify all required tables, indexes, and triggers exist
+ * @param db - Database instance
+ * @returns Object with verification results
+ */
+export declare function verifySchema(db: Database.Database): {
+    valid: boolean;
+    missingTables: string[];
+    missingIndexes: string[];
+    missingTriggers: string[];
+};
+//# sourceMappingURL=verification.d.ts.map

package/dist/services/storage/migrations/verification.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/storage/migrations/verification.js

@@ -0,0 +1,78 @@
+/**
+ * Schema Verification Functions
+ *
+ * Contains functions to verify database schema integrity.
+ *
+ * @module migrations/verification
+ */
+import { REQUIRED_TABLES, REQUIRED_INDEXES } from './schema-definitions.js';
+/**
+ * Required triggers for FTS sync (chunks_fts, vlm_fts, extractions_fts, and documents_fts)
+ */
+const REQUIRED_TRIGGERS = [
+    'chunks_fts_ai',
+    'chunks_fts_ad',
+    'chunks_fts_au',
+    'vlm_fts_ai',
+    'vlm_fts_ad',
+    'vlm_fts_au',
+    'extractions_fts_ai',
+    'extractions_fts_ad',
+    'extractions_fts_au',
+    'documents_fts_ai',
+    'documents_fts_ad',
+    'documents_fts_au',
+];
+/**
+ * Verify all required tables, indexes, and triggers exist
+ * @param db - Database instance
+ * @returns Object with verification results
+ */
+export function verifySchema(db) {
+    const missingTables = [];
+    const missingIndexes = [];
+    const missingTriggers = [];
+    // Check tables
+    for (const tableName of REQUIRED_TABLES) {
+        const exists = db
+            .prepare(`
+      SELECT name FROM sqlite_master
+      WHERE (type = 'table' OR type = 'virtual table') AND name = ?
+    `)
+            .get(tableName);
+        if (!exists) {
+            missingTables.push(tableName);
+        }
+    }
+    // Check indexes
+    for (const indexName of REQUIRED_INDEXES) {
+        const exists = db
+            .prepare(`
+      SELECT name FROM sqlite_master
+      WHERE type = 'index' AND name = ?
+    `)
+            .get(indexName);
+        if (!exists) {
+            missingIndexes.push(indexName);
+        }
+    }
+    // Check triggers (FTS sync triggers are critical for search correctness)
+    for (const triggerName of REQUIRED_TRIGGERS) {
+        const exists = db
+            .prepare(`
+      SELECT name FROM sqlite_master
+      WHERE type = 'trigger' AND name = ?
+    `)
+            .get(triggerName);
+        if (!exists) {
+            missingTriggers.push(triggerName);
+        }
+    }
+    return {
+        valid: missingTables.length === 0 && missingIndexes.length === 0 && missingTriggers.length === 0,
+        missingTables,
+        missingIndexes,
+        missingTriggers,
+    };
+}
+//# sourceMappingURL=verification.js.map

package/dist/services/storage/migrations/verification.js.map

@@ -0,0 +1 @@
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package/dist/services/storage/migrations.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Database Schema Migrations for OCR Provenance MCP System
+ *
+ * This module handles SQLite schema initialization and migrations.
+ * Uses better-sqlite3 with sqlite-vec extension for vector storage.
+ *
+ * Security: All SQL uses parameterized queries via db.prepare()
+ * Performance: WAL mode, proper indexes, foreign key constraints
+ *
+ * NOTE: This file is a facade for backwards compatibility.
+ * The implementation has been modularized into the migrations/ directory.
+ *
+ * @module migrations
+ */
+export { MigrationError, initializeDatabase, migrateToLatest, checkSchemaVersion, getCurrentSchemaVersion, configurePragmas, verifySchema, } from './migrations/index.js';
+//# sourceMappingURL=migrations.d.ts.map

package/dist/services/storage/migrations.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../../../src/services/storage/migrations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAGH,OAAO,EACL,cAAc,EACd,kBAAkB,EAClB,eAAe,EACf,kBAAkB,EAClB,uBAAuB,EACvB,gBAAgB,EAChB,YAAY,GACb,MAAM,uBAAuB,CAAC"}

package/dist/services/storage/migrations.js

@@ -0,0 +1,17 @@
+/**
+ * Database Schema Migrations for OCR Provenance MCP System
+ *
+ * This module handles SQLite schema initialization and migrations.
+ * Uses better-sqlite3 with sqlite-vec extension for vector storage.
+ *
+ * Security: All SQL uses parameterized queries via db.prepare()
+ * Performance: WAL mode, proper indexes, foreign key constraints
+ *
+ * NOTE: This file is a facade for backwards compatibility.
+ * The implementation has been modularized into the migrations/ directory.
+ *
+ * @module migrations
+ */
+// Re-export all public APIs from the modularized implementation
+export { MigrationError, initializeDatabase, migrateToLatest, checkSchemaVersion, getCurrentSchemaVersion, configurePragmas, verifySchema, } from './migrations/index.js';
+//# sourceMappingURL=migrations.js.map

package/dist/services/storage/migrations.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"migrations.js","sourceRoot":"","sources":["../../../src/services/storage/migrations.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,gEAAgE;AAChE,OAAO,EACL,cAAc,EACd,kBAAkB,EAClB,eAAe,EACf,kBAAkB,EAClB,uBAAuB,EACvB,gBAAgB,EAChB,YAAY,GACb,MAAM,uBAAuB,CAAC"}

package/dist/services/storage/types.d.ts

@@ -0,0 +1,12 @@
+/**
+ * Shared types for storage services
+ */
+import Database from 'better-sqlite3';
+/**
+ * Type definition for sqlite-vec module
+ * Used by both migrations.ts and database.ts for loading the vector extension
+ */
+export interface SqliteVecModule {
+    load: (db: Database.Database) => void;
+}
+//# sourceMappingURL=types.d.ts.map

package/dist/services/storage/types.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/storage/types.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AAEtC;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC9B,IAAI,EAAE,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,KAAK,IAAI,CAAC;CACvC"}

package/dist/services/storage/types.js

@@ -0,0 +1,5 @@
+/**
+ * Shared types for storage services
+ */
+export {};
+//# sourceMappingURL=types.js.map

package/dist/services/storage/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../src/services/storage/types.ts"],"names":[],"mappings":"AAAA;;GAEG"}