ocr-provenance-mcp 1.0.0

package/dist/services/storage/database/document-operations.js.map

@@ -0,0 +1 @@
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package/dist/services/storage/database/embedding-operations.d.ts

@@ -0,0 +1,130 @@
+/**
+ * Embedding operations for DatabaseService
+ *
+ * Handles all CRUD operations for embeddings including batch inserts.
+ * Note: Vector data is stored separately in vec_embeddings by VectorService.
+ */
+import Database from 'better-sqlite3';
+import { Embedding } from '../../../models/embedding.js';
+/**
+ * Insert an embedding (vector stored separately in vec_embeddings by VectorService)
+ *
+ * @param db - Database connection
+ * @param embedding - Embedding data (created_at will be generated, vector excluded)
+ * @param updateMetadataCounts - Callback to update metadata counts
+ * @returns string - The embedding ID
+ */
+export declare function insertEmbedding(db: Database.Database, embedding: Omit<Embedding, 'created_at' | 'vector'>, updateMetadataCounts: () => void): string;
+/**
+ * Insert multiple embeddings in a batch transaction
+ *
+ * @param db - Database connection
+ * @param embeddings - Array of embedding data
+ * @param updateMetadataCounts - Callback to update metadata counts
+ * @param transaction - Transaction wrapper function
+ * @returns string[] - Array of embedding IDs
+ */
+export declare function insertEmbeddings(db: Database.Database, embeddings: Omit<Embedding, 'created_at' | 'vector'>[], updateMetadataCounts: () => void, transaction: <T>(fn: () => T) => T): string[];
+/**
+ * Get an embedding by ID (without vector)
+ *
+ * @param db - Database connection
+ * @param id - Embedding ID
+ * @returns Omit<Embedding, 'vector'> | null - The embedding or null if not found
+ */
+export declare function getEmbedding(db: Database.Database, id: string): Omit<Embedding, 'vector'> | null;
+/**
+ * Get embedding by chunk ID (without vector)
+ *
+ * @param db - Database connection
+ * @param chunkId - Chunk ID
+ * @returns Omit<Embedding, 'vector'> | null - The embedding or null if not found
+ */
+export declare function getEmbeddingByChunkId(db: Database.Database, chunkId: string): Omit<Embedding, 'vector'> | null;
+/**
+ * Get embedding by extraction ID (without vector)
+ *
+ * @param db - Database connection
+ * @param extractionId - Extraction ID
+ * @returns Omit<Embedding, 'vector'> | null
+ */
+export declare function getEmbeddingByExtractionId(db: Database.Database, extractionId: string): Omit<Embedding, 'vector'> | null;
+/**
+ * Get all embeddings for a document (without vectors)
+ *
+ * @param db - Database connection
+ * @param documentId - Document ID
+ * @returns Omit<Embedding, 'vector'>[] - Array of embeddings
+ */
+export declare function getEmbeddingsByDocumentId(db: Database.Database, documentId: string, options?: {
+    limit?: number;
+    offset?: number;
+}): Omit<Embedding, 'vector'>[];
+/**
+ * Filter options for getEmbeddingsFiltered
+ */
+export interface EmbeddingFilterOptions {
+    document_id?: string;
+    source_type?: 'chunk' | 'image' | 'extraction';
+    model_name?: string;
+    limit?: number;
+    offset?: number;
+}
+/**
+ * Get embeddings with dynamic filtering by document, source type, model.
+ * Does NOT select the vector column (it's huge binary data in vec_embeddings).
+ *
+ * @param db - Database connection
+ * @param filters - Filter options
+ * @returns Array of embeddings (without vector) and total count
+ */
+export declare function getEmbeddingsFiltered(db: Database.Database, filters: EmbeddingFilterOptions): {
+    embeddings: Array<Omit<Embedding, 'vector'>>;
+    total: number;
+};
+/**
+ * Embedding statistics result
+ */
+export interface EmbeddingStatsResult {
+    total_embeddings: number;
+    by_source_type: Record<string, {
+        count: number;
+        avg_duration_ms: number;
+    }>;
+    by_device: Record<string, number>;
+    unembedded_chunks: number;
+    unembedded_images: number;
+}
+/**
+ * Get embedding statistics with optional document-level scoping.
+ *
+ * @param db - Database connection
+ * @param documentId - Optional document ID to scope stats
+ * @returns EmbeddingStatsResult
+ */
+export declare function getEmbeddingStats(db: Database.Database, documentId?: string): EmbeddingStatsResult;
+/**
+ * Delete all embeddings for a specific chunk
+ *
+ * @param db - Database connection
+ * @param chunkId - Chunk ID
+ * @returns number of embeddings deleted
+ */
+export declare function deleteEmbeddingsByChunkId(db: Database.Database, chunkId: string): number;
+/**
+ * Delete all embeddings for a specific image
+ *
+ * @param db - Database connection
+ * @param imageId - Image ID
+ * @returns number of embeddings deleted
+ */
+export declare function deleteEmbeddingsByImageId(db: Database.Database, imageId: string): number;
+/**
+ * Delete all embeddings for a document
+ *
+ * @param db - Database connection
+ * @param documentId - Document ID
+ * @returns number of embeddings deleted
+ */
+export declare function deleteEmbeddingsByDocumentId(db: Database.Database, documentId: string): number;
+//# sourceMappingURL=embedding-operations.d.ts.map

package/dist/services/storage/database/embedding-operations.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/storage/database/embedding-operations.js

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+/**
+ * Embedding operations for DatabaseService
+ *
+ * Handles all CRUD operations for embeddings including batch inserts.
+ * Note: Vector data is stored separately in vec_embeddings by VectorService.
+ */
+import { runWithForeignKeyCheck } from './helpers.js';
+import { rowToEmbedding } from './converters.js';
+/**
+ * Insert an embedding (vector stored separately in vec_embeddings by VectorService)
+ *
+ * @param db - Database connection
+ * @param embedding - Embedding data (created_at will be generated, vector excluded)
+ * @param updateMetadataCounts - Callback to update metadata counts
+ * @returns string - The embedding ID
+ */
+export function insertEmbedding(db, embedding, updateMetadataCounts) {
+    const created_at = new Date().toISOString();
+    const stmt = db.prepare(`
+    INSERT INTO embeddings (
+      id, chunk_id, image_id, extraction_id, document_id, original_text, original_text_length,
+      source_file_path, source_file_name, source_file_hash,
+      page_number, page_range, character_start, character_end,
+      chunk_index, total_chunks, model_name, model_version,
+      task_type, inference_mode, gpu_device, provenance_id,
+      content_hash, created_at, generation_duration_ms
+    ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+  `);
+    runWithForeignKeyCheck(stmt, [
+        embedding.id,
+        embedding.chunk_id,
+        embedding.image_id,
+        embedding.extraction_id,
+        embedding.document_id,
+        embedding.original_text,
+        embedding.original_text_length,
+        embedding.source_file_path,
+        embedding.source_file_name,
+        embedding.source_file_hash,
+        embedding.page_number,
+        embedding.page_range,
+        embedding.character_start,
+        embedding.character_end,
+        embedding.chunk_index,
+        embedding.total_chunks,
+        embedding.model_name,
+        embedding.model_version,
+        embedding.task_type,
+        embedding.inference_mode,
+        embedding.gpu_device,
+        embedding.provenance_id,
+        embedding.content_hash,
+        created_at,
+        embedding.generation_duration_ms,
+    ], 'inserting embedding: chunk_id/image_id/extraction_id, document_id, or provenance_id does not exist');
+    updateMetadataCounts();
+    return embedding.id;
+}
+/**
+ * Insert multiple embeddings in a batch transaction
+ *
+ * @param db - Database connection
+ * @param embeddings - Array of embedding data
+ * @param updateMetadataCounts - Callback to update metadata counts
+ * @param transaction - Transaction wrapper function
+ * @returns string[] - Array of embedding IDs
+ */
+export function insertEmbeddings(db, embeddings, updateMetadataCounts, transaction) {
+    if (embeddings.length === 0) {
+        return [];
+    }
+    return transaction(() => {
+        const created_at = new Date().toISOString();
+        const ids = [];
+        const stmt = db.prepare(`
+      INSERT INTO embeddings (
+        id, chunk_id, image_id, extraction_id, document_id, original_text, original_text_length,
+        source_file_path, source_file_name, source_file_hash,
+        page_number, page_range, character_start, character_end,
+        chunk_index, total_chunks, model_name, model_version,
+        task_type, inference_mode, gpu_device, provenance_id,
+        content_hash, created_at, generation_duration_ms
+      ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+    `);
+        for (const embedding of embeddings) {
+            runWithForeignKeyCheck(stmt, [
+                embedding.id,
+                embedding.chunk_id,
+                embedding.image_id,
+                embedding.extraction_id,
+                embedding.document_id,
+                embedding.original_text,
+                embedding.original_text_length,
+                embedding.source_file_path,
+                embedding.source_file_name,
+                embedding.source_file_hash,
+                embedding.page_number,
+                embedding.page_range,
+                embedding.character_start,
+                embedding.character_end,
+                embedding.chunk_index,
+                embedding.total_chunks,
+                embedding.model_name,
+                embedding.model_version,
+                embedding.task_type,
+                embedding.inference_mode,
+                embedding.gpu_device,
+                embedding.provenance_id,
+                embedding.content_hash,
+                created_at,
+                embedding.generation_duration_ms,
+            ], `inserting embedding "${embedding.id}"`);
+            ids.push(embedding.id);
+        }
+        updateMetadataCounts();
+        return ids;
+    });
+}
+/**
+ * Get an embedding by ID (without vector)
+ *
+ * @param db - Database connection
+ * @param id - Embedding ID
+ * @returns Omit<Embedding, 'vector'> | null - The embedding or null if not found
+ */
+export function getEmbedding(db, id) {
+    const stmt = db.prepare('SELECT * FROM embeddings WHERE id = ?');
+    const row = stmt.get(id);
+    return row ? rowToEmbedding(row) : null;
+}
+/**
+ * Get embedding by chunk ID (without vector)
+ *
+ * @param db - Database connection
+ * @param chunkId - Chunk ID
+ * @returns Omit<Embedding, 'vector'> | null - The embedding or null if not found
+ */
+export function getEmbeddingByChunkId(db, chunkId) {
+    const stmt = db.prepare('SELECT * FROM embeddings WHERE chunk_id = ?');
+    const row = stmt.get(chunkId);
+    return row ? rowToEmbedding(row) : null;
+}
+/**
+ * Get embedding by extraction ID (without vector)
+ *
+ * @param db - Database connection
+ * @param extractionId - Extraction ID
+ * @returns Omit<Embedding, 'vector'> | null
+ */
+export function getEmbeddingByExtractionId(db, extractionId) {
+    const stmt = db.prepare('SELECT * FROM embeddings WHERE extraction_id = ?');
+    const row = stmt.get(extractionId);
+    return row ? rowToEmbedding(row) : null;
+}
+/**
+ * Get all embeddings for a document (without vectors)
+ *
+ * @param db - Database connection
+ * @param documentId - Document ID
+ * @returns Omit<Embedding, 'vector'>[] - Array of embeddings
+ */
+export function getEmbeddingsByDocumentId(db, documentId, options) {
+    let sql = 'SELECT * FROM embeddings WHERE document_id = ? ORDER BY chunk_index';
+    const params = [documentId];
+    const limit = options?.limit ?? 10000;
+    sql += ' LIMIT ?';
+    params.push(limit);
+    if (options?.offset !== undefined) {
+        sql += ' OFFSET ?';
+        params.push(options.offset);
+    }
+    const stmt = db.prepare(sql);
+    const rows = stmt.all(...params);
+    return rows.map(rowToEmbedding);
+}
+/**
+ * Get embeddings with dynamic filtering by document, source type, model.
+ * Does NOT select the vector column (it's huge binary data in vec_embeddings).
+ *
+ * @param db - Database connection
+ * @param filters - Filter options
+ * @returns Array of embeddings (without vector) and total count
+ */
+export function getEmbeddingsFiltered(db, filters) {
+    const conditions = [];
+    const params = [];
+    if (filters.document_id) {
+        conditions.push('e.document_id = ?');
+        params.push(filters.document_id);
+    }
+    if (filters.source_type === 'chunk') {
+        conditions.push('e.chunk_id IS NOT NULL AND e.image_id IS NULL AND e.extraction_id IS NULL');
+    }
+    else if (filters.source_type === 'image') {
+        conditions.push('e.image_id IS NOT NULL');
+    }
+    else if (filters.source_type === 'extraction') {
+        conditions.push('e.extraction_id IS NOT NULL');
+    }
+    if (filters.model_name) {
+        conditions.push('e.model_name = ?');
+        params.push(filters.model_name);
+    }
+    const whereClause = conditions.length > 0
+        ? 'WHERE ' + conditions.join(' AND ')
+        : '';
+    // Get total count
+    const countRow = db.prepare(`SELECT COUNT(*) as total FROM embeddings e ${whereClause}`).get(...params);
+    const limit = filters.limit ?? 50;
+    const offset = filters.offset ?? 0;
+    const rows = db.prepare(`SELECT e.* FROM embeddings e ${whereClause} ORDER BY e.created_at DESC LIMIT ? OFFSET ?`).all(...params, limit, offset);
+    return {
+        embeddings: rows.map(rowToEmbedding),
+        total: countRow.total,
+    };
+}
+/**
+ * Get embedding statistics with optional document-level scoping.
+ *
+ * @param db - Database connection
+ * @param documentId - Optional document ID to scope stats
+ * @returns EmbeddingStatsResult
+ */
+export function getEmbeddingStats(db, documentId) {
+    const docFilter = documentId ? ' WHERE document_id = ?' : '';
+    const docParams = documentId ? [documentId] : [];
+    // Total embeddings
+    const totalRow = db.prepare(`SELECT COUNT(*) as total FROM embeddings${docFilter}`).get(...docParams);
+    // By source type
+    const sourceTypeRows = db.prepare(`
+    SELECT
+      CASE
+        WHEN chunk_id IS NOT NULL AND image_id IS NULL AND extraction_id IS NULL THEN 'chunk'
+        WHEN image_id IS NOT NULL THEN 'image'
+        WHEN extraction_id IS NOT NULL THEN 'extraction'
+        ELSE 'unknown'
+      END as source_type,
+      COUNT(*) as count,
+      COALESCE(AVG(generation_duration_ms), 0) as avg_duration_ms
+    FROM embeddings${docFilter}
+    GROUP BY source_type
+  `).all(...docParams);
+    const by_source_type = {};
+    for (const row of sourceTypeRows) {
+        by_source_type[row.source_type] = {
+            count: row.count,
+            avg_duration_ms: Math.round(row.avg_duration_ms),
+        };
+    }
+    // By device (from provenance processor field)
+    const deviceRows = db.prepare(`
+    SELECT
+      COALESCE(e.gpu_device, 'unknown') as device,
+      COUNT(*) as count
+    FROM embeddings e${docFilter}
+    GROUP BY device
+  `).all(...docParams);
+    const by_device = {};
+    for (const row of deviceRows) {
+        by_device[row.device] = row.count;
+    }
+    // Unembedded chunks: chunks with embedding_status != 'complete'
+    const unembeddedChunksRow = db.prepare(`
+    SELECT COUNT(*) as count FROM chunks
+    WHERE embedding_status != 'complete'${documentId ? ' AND document_id = ?' : ''}
+  `).get(...docParams);
+    // Unembedded images: images with vlm_status='complete' but no VLM embedding
+    const unembeddedImagesRow = db.prepare(`
+    SELECT COUNT(*) as count FROM images i
+    WHERE i.vlm_status = 'complete'
+      AND i.vlm_embedding_id IS NULL
+      ${documentId ? 'AND i.document_id = ?' : ''}
+  `).get(...docParams);
+    return {
+        total_embeddings: totalRow.total,
+        by_source_type,
+        by_device,
+        unembedded_chunks: unembeddedChunksRow.count,
+        unembedded_images: unembeddedImagesRow.count,
+    };
+}
+/**
+ * Delete all embeddings for a specific chunk
+ *
+ * @param db - Database connection
+ * @param chunkId - Chunk ID
+ * @returns number of embeddings deleted
+ */
+export function deleteEmbeddingsByChunkId(db, chunkId) {
+    const result = db.prepare('DELETE FROM embeddings WHERE chunk_id = ?').run(chunkId);
+    return result.changes;
+}
+/**
+ * Delete all embeddings for a specific image
+ *
+ * @param db - Database connection
+ * @param imageId - Image ID
+ * @returns number of embeddings deleted
+ */
+export function deleteEmbeddingsByImageId(db, imageId) {
+    const result = db.prepare('DELETE FROM embeddings WHERE image_id = ?').run(imageId);
+    return result.changes;
+}
+/**
+ * Delete all embeddings for a document
+ *
+ * @param db - Database connection
+ * @param documentId - Document ID
+ * @returns number of embeddings deleted
+ */
+export function deleteEmbeddingsByDocumentId(db, documentId) {
+    const result = db.prepare('DELETE FROM embeddings WHERE document_id = ?').run(documentId);
+    return result.changes;
+}
+//# sourceMappingURL=embedding-operations.js.map

package/dist/services/storage/database/embedding-operations.js.map

@@ -0,0 +1 @@
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package/dist/services/storage/database/extraction-operations.d.ts

@@ -0,0 +1,47 @@
+/**
+ * Extraction operations for DatabaseService
+ *
+ * Handles all CRUD operations for structured extractions
+ * from page_schema processing.
+ */
+import Database from 'better-sqlite3';
+import { Extraction } from '../../../models/extraction.js';
+/**
+ * Insert an extraction record
+ *
+ * @param db - Database connection
+ * @param extraction - Extraction data
+ * @param updateMetadataCounts - Callback to update metadata counts
+ * @returns string - The extraction ID
+ */
+export declare function insertExtraction(db: Database.Database, extraction: Extraction, updateMetadataCounts: () => void): string;
+/**
+ * Get all extractions for a document
+ *
+ * @param db - Database connection
+ * @param documentId - Document ID
+ * @returns Extraction[] - Array of extractions ordered by created_at DESC
+ */
+export declare function getExtractionsByDocument(db: Database.Database, documentId: string): Extraction[];
+/**
+ * Get a single extraction by ID
+ *
+ * @param db - Database connection
+ * @param id - Extraction ID
+ * @returns Extraction or null if not found
+ */
+export declare function getExtraction(db: Database.Database, id: string): Extraction | null;
+/**
+ * Search extractions by text matching within extraction_json content.
+ * Uses LIKE for simple text matching (no FTS5 for extractions).
+ *
+ * @param db - Database connection
+ * @param query - Search query string
+ * @param filters - Optional filters (document_filter, limit)
+ * @returns Extraction[] - Matching extractions ordered by created_at DESC
+ */
+export declare function searchExtractions(db: Database.Database, query: string, filters?: {
+    document_filter?: string[];
+    limit?: number;
+}): Extraction[];
+//# sourceMappingURL=extraction-operations.d.ts.map

package/dist/services/storage/database/extraction-operations.d.ts.map

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package/dist/services/storage/database/extraction-operations.js

@@ -0,0 +1,85 @@
+/**
+ * Extraction operations for DatabaseService
+ *
+ * Handles all CRUD operations for structured extractions
+ * from page_schema processing.
+ */
+import { runWithForeignKeyCheck } from './helpers.js';
+/**
+ * Insert an extraction record
+ *
+ * @param db - Database connection
+ * @param extraction - Extraction data
+ * @param updateMetadataCounts - Callback to update metadata counts
+ * @returns string - The extraction ID
+ */
+export function insertExtraction(db, extraction, updateMetadataCounts) {
+    const stmt = db.prepare(`
+    INSERT INTO extractions (id, document_id, ocr_result_id, schema_json, extraction_json, content_hash, provenance_id, created_at)
+    VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+  `);
+    runWithForeignKeyCheck(stmt, [
+        extraction.id,
+        extraction.document_id,
+        extraction.ocr_result_id,
+        extraction.schema_json,
+        extraction.extraction_json,
+        extraction.content_hash,
+        extraction.provenance_id,
+        extraction.created_at,
+    ], `inserting extraction: FK violation for document_id="${extraction.document_id}"`);
+    updateMetadataCounts();
+    return extraction.id;
+}
+/**
+ * Get all extractions for a document
+ *
+ * @param db - Database connection
+ * @param documentId - Document ID
+ * @returns Extraction[] - Array of extractions ordered by created_at DESC
+ */
+export function getExtractionsByDocument(db, documentId) {
+    return db
+        .prepare('SELECT * FROM extractions WHERE document_id = ? ORDER BY created_at DESC LIMIT 1000')
+        .all(documentId);
+}
+/**
+ * Get a single extraction by ID
+ *
+ * @param db - Database connection
+ * @param id - Extraction ID
+ * @returns Extraction or null if not found
+ */
+export function getExtraction(db, id) {
+    const row = db
+        .prepare('SELECT * FROM extractions WHERE id = ?')
+        .get(id);
+    return row ?? null;
+}
+/**
+ * Search extractions by text matching within extraction_json content.
+ * Uses LIKE for simple text matching (no FTS5 for extractions).
+ *
+ * @param db - Database connection
+ * @param query - Search query string
+ * @param filters - Optional filters (document_filter, limit)
+ * @returns Extraction[] - Matching extractions ordered by created_at DESC
+ */
+export function searchExtractions(db, query, filters) {
+    const limit = filters?.limit ?? 10;
+    const conditions = ['extraction_json LIKE ? ESCAPE \'\\\''];
+    // Escape special LIKE characters in the query
+    const escapedQuery = query.replace(/[%_\\]/g, (ch) => `\\${ch}`);
+    const params = [`%${escapedQuery}%`];
+    if (filters?.document_filter && filters.document_filter.length > 0) {
+        const placeholders = filters.document_filter.map(() => '?').join(', ');
+        conditions.push(`document_id IN (${placeholders})`);
+        params.push(...filters.document_filter);
+    }
+    const whereClause = conditions.join(' AND ');
+    params.push(limit);
+    return db
+        .prepare(`SELECT * FROM extractions WHERE ${whereClause} ORDER BY created_at DESC LIMIT ?`)
+        .all(...params);
+}
+//# sourceMappingURL=extraction-operations.js.map

package/dist/services/storage/database/extraction-operations.js.map

@@ -0,0 +1 @@
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