ocr-provenance-mcp 1.0.0

package/dist/services/storage/database/service.d.ts

@@ -0,0 +1,142 @@
+/**
+ * DatabaseService class for all database operations
+ *
+ * Provides CRUD operations for documents, OCR results, chunks, embeddings,
+ * and provenance records. Uses prepared statements for security and performance.
+ */
+import Database from 'better-sqlite3';
+import { Document, DocumentStatus, OCRResult } from '../../../models/document.js';
+import { Chunk } from '../../../models/chunk.js';
+import { Embedding } from '../../../models/embedding.js';
+import { ProvenanceRecord } from '../../../models/provenance.js';
+import { DatabaseInfo, DatabaseStats, ListDocumentsOptions } from './types.js';
+import type { TimelineStatsOptions, TimelineDataPoint, QualityTrendOptions, QualityTrendDataPoint, ThroughputOptions, ThroughputDataPoint } from './stats-operations.js';
+import type { ChunkFilterOptions } from './chunk-operations.js';
+import * as embOps from './embedding-operations.js';
+import * as provOps from './provenance-operations.js';
+import type { Tag, TagWithCount, EntityTagResult } from './tag-operations.js';
+import type { Extraction } from '../../../models/extraction.js';
+import type { FormFill } from '../../../models/form-fill.js';
+/**
+ * DatabaseService class for all database operations
+ */
+export declare class DatabaseService {
+    private db;
+    private readonly name;
+    private readonly path;
+    private constructor();
+    static create(name: string, description?: string, storagePath?: string): DatabaseService;
+    static open(name: string, storagePath?: string): DatabaseService;
+    static list(storagePath?: string): DatabaseInfo[];
+    static delete(name: string, storagePath?: string): void;
+    static exists(name: string, storagePath?: string): boolean;
+    getStats(): DatabaseStats;
+    close(): void;
+    getName(): string;
+    getPath(): string;
+    transaction<T>(fn: () => T): T;
+    getConnection(): Database.Database;
+    insertDocument(doc: Omit<Document, 'created_at'>): string;
+    getDocument(id: string): Document | null;
+    getDocumentByPath(filePath: string): Document | null;
+    getDocumentByHash(fileHash: string): Document | null;
+    listDocuments(options?: ListDocumentsOptions): Document[];
+    updateDocumentStatus(id: string, status: DocumentStatus, errorMessage?: string): void;
+    updateDocumentOCRComplete(id: string, pageCount: number, ocrCompletedAt: string): void;
+    deleteDocument(id: string): void;
+    cleanDocumentDerivedData(id: string): void;
+    insertOCRResult(result: OCRResult): string;
+    getOCRResult(id: string): OCRResult | null;
+    getOCRResultByDocumentId(documentId: string): OCRResult | null;
+    insertChunk(chunk: Omit<Chunk, 'created_at' | 'embedding_status' | 'embedded_at'>): string;
+    insertChunks(chunks: Omit<Chunk, 'created_at' | 'embedding_status' | 'embedded_at'>[]): string[];
+    getChunk(id: string): Chunk | null;
+    hasChunksByDocumentId(documentId: string): boolean;
+    getChunksByDocumentId(documentId: string): Chunk[];
+    getChunksByOCRResultId(ocrResultId: string): Chunk[];
+    getPendingEmbeddingChunks(limit?: number): Chunk[];
+    updateChunkEmbeddingStatus(id: string, status: 'pending' | 'complete' | 'failed', embeddedAt?: string): void;
+    getChunksFiltered(documentId: string, filters: ChunkFilterOptions): {
+        chunks: Chunk[];
+        total: number;
+    };
+    getChunkNeighbors(documentId: string, chunkIndex: number, count: number): Chunk[];
+    insertEmbedding(embedding: Omit<Embedding, 'created_at' | 'vector'>): string;
+    insertEmbeddings(embeddings: Omit<Embedding, 'created_at' | 'vector'>[]): string[];
+    getEmbedding(id: string): Omit<Embedding, 'vector'> | null;
+    getEmbeddingByChunkId(chunkId: string): Omit<Embedding, 'vector'> | null;
+    getEmbeddingByExtractionId(extractionId: string): Omit<Embedding, 'vector'> | null;
+    getEmbeddingsByDocumentId(documentId: string): Omit<Embedding, 'vector'>[];
+    getEmbeddingsFiltered(filters: embOps.EmbeddingFilterOptions): {
+        embeddings: Array<Omit<Embedding, 'vector'>>;
+        total: number;
+    };
+    getEmbeddingStats(documentId?: string): embOps.EmbeddingStatsResult;
+    deleteEmbeddingsByChunkId(chunkId: string): number;
+    deleteEmbeddingsByImageId(imageId: string): number;
+    deleteEmbeddingsByDocumentId(documentId: string): number;
+    insertProvenance(record: ProvenanceRecord): string;
+    getProvenance(id: string): ProvenanceRecord | null;
+    getProvenanceChain(id: string): ProvenanceRecord[];
+    getProvenanceByRootDocument(rootDocumentId: string): ProvenanceRecord[];
+    getProvenanceChildren(parentId: string): ProvenanceRecord[];
+    queryProvenance(filters: provOps.ProvenanceQueryFilters): {
+        records: ProvenanceRecord[];
+        total: number;
+    };
+    getProvenanceProcessorStats(filters?: {
+        processor?: string;
+        created_after?: string;
+        created_before?: string;
+    }): provOps.ProvenanceProcessorStat[];
+    insertExtraction(extraction: Extraction): string;
+    getExtractionsByDocument(documentId: string): Extraction[];
+    getExtraction(id: string): Extraction | null;
+    searchExtractions(query: string, filters?: {
+        document_filter?: string[];
+        limit?: number;
+    }): Extraction[];
+    insertFormFill(formFill: FormFill): string;
+    getFormFill(id: string): FormFill | null;
+    listFormFills(options?: {
+        status?: string;
+        limit?: number;
+        offset?: number;
+    }): FormFill[];
+    searchFormFills(query: string, options?: {
+        limit?: number;
+        offset?: number;
+    }): FormFill[];
+    deleteFormFill(id: string): boolean;
+    updateDocumentMetadata(id: string, metadata: {
+        docTitle?: string | null;
+        docAuthor?: string | null;
+        docSubject?: string | null;
+    }): void;
+    getTimelineStats(options: TimelineStatsOptions): TimelineDataPoint[];
+    getQualityTrends(options: QualityTrendOptions): QualityTrendDataPoint[];
+    getThroughputAnalytics(options: ThroughputOptions): ThroughputDataPoint[];
+    reassignDocument(documentId: string, targetClusterId: string): {
+        old_cluster_id: string | null;
+        run_id: string;
+    };
+    mergeClusters(clusterId1: string, clusterId2: string): {
+        merged_cluster_id: string;
+        documents_moved: number;
+    };
+    updateImageProvenance(id: string, provenanceId: string): void;
+    createTag(tag: {
+        name: string;
+        description?: string;
+        color?: string;
+    }): Tag;
+    getTagByName(name: string): Tag | null;
+    getAllTags(): Tag[];
+    getTagsWithCounts(): TagWithCount[];
+    applyTag(tagId: string, entityId: string, entityType: string): string;
+    removeTag(tagId: string, entityId: string, entityType: string): boolean;
+    getTagsForEntity(entityId: string, entityType: string): Tag[];
+    searchByTags(tagNames: string[], entityType?: string, matchAll?: boolean): EntityTagResult[];
+    deleteTag(tagId: string): number;
+}
+//# sourceMappingURL=service.d.ts.map

package/dist/services/storage/database/service.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/storage/database/service.js

@@ -0,0 +1,310 @@
+/**
+ * DatabaseService class for all database operations
+ *
+ * Provides CRUD operations for documents, OCR results, chunks, embeddings,
+ * and provenance records. Uses prepared statements for security and performance.
+ */
+import { createDatabase, openDatabase, listDatabases, deleteDatabase, databaseExists, } from './static-operations.js';
+import { getStats, updateMetadataCounts, updateMetadataModified, getTimelineStats, getQualityTrends, getThroughputAnalytics, } from './stats-operations.js';
+import * as docOps from './document-operations.js';
+import * as ocrOps from './ocr-operations.js';
+import * as chunkOps from './chunk-operations.js';
+import * as embOps from './embedding-operations.js';
+import * as provOps from './provenance-operations.js';
+import * as extOps from './extraction-operations.js';
+import * as ffOps from './form-fill-operations.js';
+import { updateImageProvenance } from './image-operations.js';
+import { reassignDocument, mergeClusters } from './cluster-operations.js';
+import * as tagOps from './tag-operations.js';
+/**
+ * DatabaseService class for all database operations
+ */
+export class DatabaseService {
+    db;
+    name;
+    path;
+    constructor(db, name, path) {
+        this.db = db;
+        this.name = name;
+        this.path = path;
+    }
+    static create(name, description, storagePath) {
+        const result = createDatabase(name, description, storagePath);
+        return new DatabaseService(result.db, result.name, result.path);
+    }
+    static open(name, storagePath) {
+        const result = openDatabase(name, storagePath);
+        return new DatabaseService(result.db, result.name, result.path);
+    }
+    static list(storagePath) {
+        return listDatabases(storagePath);
+    }
+    static delete(name, storagePath) {
+        deleteDatabase(name, storagePath);
+    }
+    static exists(name, storagePath) {
+        return databaseExists(name, storagePath);
+    }
+    getStats() {
+        return getStats(this.db, this.name, this.path);
+    }
+    close() {
+        try {
+            this.db.pragma('optimize');
+        }
+        catch (error) {
+            console.error('[DatabaseService] pragma optimize failed:', error instanceof Error ? error.message : String(error));
+        }
+        this.db.close();
+    }
+    getName() {
+        return this.name;
+    }
+    getPath() {
+        return this.path;
+    }
+    transaction(fn) {
+        return this.db.transaction(fn)();
+    }
+    getConnection() {
+        return this.db;
+    }
+    // ==================== DOCUMENT OPERATIONS ====================
+    insertDocument(doc) {
+        return docOps.insertDocument(this.db, doc, () => {
+            updateMetadataCounts(this.db);
+        });
+    }
+    getDocument(id) {
+        return docOps.getDocument(this.db, id);
+    }
+    getDocumentByPath(filePath) {
+        return docOps.getDocumentByPath(this.db, filePath);
+    }
+    getDocumentByHash(fileHash) {
+        return docOps.getDocumentByHash(this.db, fileHash);
+    }
+    listDocuments(options) {
+        return docOps.listDocuments(this.db, options);
+    }
+    updateDocumentStatus(id, status, errorMessage) {
+        docOps.updateDocumentStatus(this.db, id, status, errorMessage, () => {
+            updateMetadataModified(this.db);
+        });
+    }
+    updateDocumentOCRComplete(id, pageCount, ocrCompletedAt) {
+        docOps.updateDocumentOCRComplete(this.db, id, pageCount, ocrCompletedAt, () => {
+            updateMetadataModified(this.db);
+        });
+    }
+    deleteDocument(id) {
+        this.transaction(() => {
+            docOps.deleteDocument(this.db, id, () => {
+                updateMetadataCounts(this.db);
+            });
+        });
+    }
+    cleanDocumentDerivedData(id) {
+        this.transaction(() => {
+            docOps.cleanDocumentDerivedData(this.db, id);
+        });
+    }
+    // ==================== OCR RESULT OPERATIONS ====================
+    insertOCRResult(result) {
+        return ocrOps.insertOCRResult(this.db, result, () => {
+            updateMetadataCounts(this.db);
+        });
+    }
+    getOCRResult(id) {
+        return ocrOps.getOCRResult(this.db, id);
+    }
+    getOCRResultByDocumentId(documentId) {
+        return ocrOps.getOCRResultByDocumentId(this.db, documentId);
+    }
+    // ==================== CHUNK OPERATIONS ====================
+    insertChunk(chunk) {
+        return chunkOps.insertChunk(this.db, chunk, () => {
+            updateMetadataCounts(this.db);
+        });
+    }
+    insertChunks(chunks) {
+        return chunkOps.insertChunks(this.db, chunks, () => {
+            updateMetadataCounts(this.db);
+        }, (fn) => this.transaction(fn));
+    }
+    getChunk(id) {
+        return chunkOps.getChunk(this.db, id);
+    }
+    hasChunksByDocumentId(documentId) {
+        return chunkOps.hasChunksByDocumentId(this.db, documentId);
+    }
+    getChunksByDocumentId(documentId) {
+        return chunkOps.getChunksByDocumentId(this.db, documentId);
+    }
+    getChunksByOCRResultId(ocrResultId) {
+        return chunkOps.getChunksByOCRResultId(this.db, ocrResultId);
+    }
+    getPendingEmbeddingChunks(limit) {
+        return chunkOps.getPendingEmbeddingChunks(this.db, limit);
+    }
+    updateChunkEmbeddingStatus(id, status, embeddedAt) {
+        chunkOps.updateChunkEmbeddingStatus(this.db, id, status, embeddedAt, () => {
+            updateMetadataModified(this.db);
+        });
+    }
+    getChunksFiltered(documentId, filters) {
+        return chunkOps.getChunksFiltered(this.db, documentId, filters);
+    }
+    getChunkNeighbors(documentId, chunkIndex, count) {
+        return chunkOps.getChunkNeighbors(this.db, documentId, chunkIndex, count);
+    }
+    // ==================== EMBEDDING OPERATIONS ====================
+    insertEmbedding(embedding) {
+        return embOps.insertEmbedding(this.db, embedding, () => {
+            updateMetadataCounts(this.db);
+        });
+    }
+    insertEmbeddings(embeddings) {
+        return embOps.insertEmbeddings(this.db, embeddings, () => {
+            updateMetadataCounts(this.db);
+        }, (fn) => this.transaction(fn));
+    }
+    getEmbedding(id) {
+        return embOps.getEmbedding(this.db, id);
+    }
+    getEmbeddingByChunkId(chunkId) {
+        return embOps.getEmbeddingByChunkId(this.db, chunkId);
+    }
+    getEmbeddingByExtractionId(extractionId) {
+        return embOps.getEmbeddingByExtractionId(this.db, extractionId);
+    }
+    getEmbeddingsByDocumentId(documentId) {
+        return embOps.getEmbeddingsByDocumentId(this.db, documentId);
+    }
+    getEmbeddingsFiltered(filters) {
+        return embOps.getEmbeddingsFiltered(this.db, filters);
+    }
+    getEmbeddingStats(documentId) {
+        return embOps.getEmbeddingStats(this.db, documentId);
+    }
+    deleteEmbeddingsByChunkId(chunkId) {
+        return embOps.deleteEmbeddingsByChunkId(this.db, chunkId);
+    }
+    deleteEmbeddingsByImageId(imageId) {
+        return embOps.deleteEmbeddingsByImageId(this.db, imageId);
+    }
+    deleteEmbeddingsByDocumentId(documentId) {
+        return embOps.deleteEmbeddingsByDocumentId(this.db, documentId);
+    }
+    // ==================== PROVENANCE OPERATIONS ====================
+    insertProvenance(record) {
+        return provOps.insertProvenance(this.db, record);
+    }
+    getProvenance(id) {
+        return provOps.getProvenance(this.db, id);
+    }
+    getProvenanceChain(id) {
+        return provOps.getProvenanceChain(this.db, id);
+    }
+    getProvenanceByRootDocument(rootDocumentId) {
+        return provOps.getProvenanceByRootDocument(this.db, rootDocumentId);
+    }
+    getProvenanceChildren(parentId) {
+        return provOps.getProvenanceChildren(this.db, parentId);
+    }
+    queryProvenance(filters) {
+        return provOps.queryProvenance(this.db, filters);
+    }
+    getProvenanceProcessorStats(filters) {
+        return provOps.getProvenanceProcessorStats(this.db, filters);
+    }
+    // ==================== EXTRACTION OPERATIONS ====================
+    insertExtraction(extraction) {
+        return extOps.insertExtraction(this.db, extraction, () => {
+            updateMetadataCounts(this.db);
+        });
+    }
+    getExtractionsByDocument(documentId) {
+        return extOps.getExtractionsByDocument(this.db, documentId);
+    }
+    getExtraction(id) {
+        return extOps.getExtraction(this.db, id);
+    }
+    searchExtractions(query, filters) {
+        return extOps.searchExtractions(this.db, query, filters);
+    }
+    // ==================== FORM FILL OPERATIONS ====================
+    insertFormFill(formFill) {
+        return ffOps.insertFormFill(this.db, formFill, () => {
+            updateMetadataCounts(this.db);
+        });
+    }
+    getFormFill(id) {
+        return ffOps.getFormFill(this.db, id);
+    }
+    listFormFills(options) {
+        return ffOps.listFormFills(this.db, options);
+    }
+    searchFormFills(query, options) {
+        return ffOps.searchFormFills(this.db, query, options);
+    }
+    deleteFormFill(id) {
+        return ffOps.deleteFormFill(this.db, id);
+    }
+    // ==================== DOCUMENT METADATA ====================
+    updateDocumentMetadata(id, metadata) {
+        docOps.updateDocumentMetadata(this.db, id, metadata, () => {
+            updateMetadataModified(this.db);
+        });
+    }
+    // ==================== TIMELINE & ANALYTICS OPERATIONS ====================
+    getTimelineStats(options) {
+        return getTimelineStats(this.db, options);
+    }
+    getQualityTrends(options) {
+        return getQualityTrends(this.db, options);
+    }
+    getThroughputAnalytics(options) {
+        return getThroughputAnalytics(this.db, options);
+    }
+    // ==================== CLUSTER OPERATIONS ====================
+    reassignDocument(documentId, targetClusterId) {
+        return reassignDocument(this.db, documentId, targetClusterId);
+    }
+    mergeClusters(clusterId1, clusterId2) {
+        return mergeClusters(this.db, clusterId1, clusterId2);
+    }
+    // ==================== IMAGE OPERATIONS ====================
+    updateImageProvenance(id, provenanceId) {
+        updateImageProvenance(this.db, id, provenanceId);
+    }
+    // ==================== TAG OPERATIONS ====================
+    createTag(tag) {
+        return tagOps.createTag(this.db, tag);
+    }
+    getTagByName(name) {
+        return tagOps.getTagByName(this.db, name);
+    }
+    getAllTags() {
+        return tagOps.getAllTags(this.db);
+    }
+    getTagsWithCounts() {
+        return tagOps.getTagsWithCounts(this.db);
+    }
+    applyTag(tagId, entityId, entityType) {
+        return tagOps.applyTag(this.db, tagId, entityId, entityType);
+    }
+    removeTag(tagId, entityId, entityType) {
+        return tagOps.removeTag(this.db, tagId, entityId, entityType);
+    }
+    getTagsForEntity(entityId, entityType) {
+        return tagOps.getTagsForEntity(this.db, entityId, entityType);
+    }
+    searchByTags(tagNames, entityType, matchAll) {
+        return tagOps.searchByTags(this.db, tagNames, entityType, matchAll);
+    }
+    deleteTag(tagId) {
+        return tagOps.deleteTag(this.db, tagId);
+    }
+}
+//# sourceMappingURL=service.js.map

package/dist/services/storage/database/service.js.map

@@ -0,0 +1 @@
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package/dist/services/storage/database/static-operations.d.ts

@@ -0,0 +1,30 @@
+/**
+ * Static operations for DatabaseService - database lifecycle: create, open, list, delete, exists.
+ */
+import Database from 'better-sqlite3';
+import { DatabaseInfo } from './types.js';
+/**
+ * Create a new database
+ * @throws DatabaseError if name is invalid or database already exists
+ */
+export declare function createDatabase(name: string, description?: string, storagePath?: string): {
+    db: Database.Database;
+    name: string;
+    path: string;
+};
+/**
+ * Open an existing database
+ * @throws DatabaseError if database doesn't exist or schema is invalid
+ */
+export declare function openDatabase(name: string, storagePath?: string): {
+    db: Database.Database;
+    name: string;
+    path: string;
+};
+/** List all available databases */
+export declare function listDatabases(storagePath?: string): DatabaseInfo[];
+/** Delete a database - throws DatabaseError if database doesn't exist */
+export declare function deleteDatabase(name: string, storagePath?: string): void;
+/** Check if a database exists */
+export declare function databaseExists(name: string, storagePath?: string): boolean;
+//# sourceMappingURL=static-operations.d.ts.map

package/dist/services/storage/database/static-operations.d.ts.map

@@ -0,0 +1 @@
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