molstar 3.3.1 → 3.4.0

package/lib/commonjs/extensions/geo-export/stl-exporter.js

@@ -17,7 +17,7 @@ var v3transformMat4 = linear_algebra_1.Vec3.transformMat4;
 var v3triangleNormal = linear_algebra_1.Vec3.triangleNormal;
 var v3toArray = linear_algebra_1.Vec3.toArray;
 var StlExporter = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(StlExporter, _super);
+    tslib_1.__extends(StlExporter, _super);
     function StlExporter(boundingBox) {
         var _this = _super.call(this) || this;
         _this.fileExtension = 'stl';
@@ -30,9 +30,9 @@ var StlExporter = /** @class */ (function (_super) {
         return _this;
     }
     StlExporter.prototype.addMeshWithColors = function (input) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var values, isGeoTexture, ctx, t, tmpV, v1, v2, v3, stride, aTransform, instanceCount, instanceIndex, _a, vertices, indices, vertexCount, drawCount, vertexArray, i, triangleBuffer, dataView, i, byteOffset;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         values = input.values, isGeoTexture = input.isGeoTexture, ctx = input.ctx;
@@ -95,9 +95,9 @@ var StlExporter = /** @class */ (function (_super) {
         });
     };
     StlExporter.prototype.getData = function () {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var stl, dataView, byteOffset, _i, _a, buffer;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 stl = new Uint8Array(84 + 50 * this.triangleCount);
                 (0, ascii_1.asciiWrite)(stl, "Exported from Mol* ".concat(version_1.PLUGIN_VERSION));
                 dataView = new DataView(stl.buffer);
@@ -113,9 +113,9 @@ var StlExporter = /** @class */ (function (_super) {
         });
     };
     StlExporter.prototype.getBlob = function (ctx) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _a;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         _a = Blob.bind;

package/lib/commonjs/extensions/geo-export/ui.js

@@ -16,12 +16,12 @@ var parameters_1 = require("../../mol-plugin-ui/controls/parameters");
 var download_1 = require("../../mol-util/download");
 var controls_1 = require("./controls");
 var GeometryExporterUI = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(GeometryExporterUI, _super);
+    tslib_1.__extends(GeometryExporterUI, _super);
     function GeometryExporterUI() {
         var _this = _super !== null && _super.apply(this, arguments) || this;
-        _this.save = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        _this.save = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var data, e_1;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         _a.trys.push([0, 2, 3, 4]);
@@ -42,9 +42,9 @@ var GeometryExporterUI = /** @class */ (function (_super) {
                 }
             });
         }); };
-        _this.viewInAR = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        _this.viewInAR = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var data, a_1, e_2;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         _a.trys.push([0, 2, 3, 4]);
@@ -94,8 +94,8 @@ var GeometryExporterUI = /** @class */ (function (_super) {
             this.isARSupported = !!((_b = (_a = document.createElement('a').relList) === null || _a === void 0 ? void 0 : _a.supports) === null || _b === void 0 ? void 0 : _b.call(_a, 'ar'));
         }
         var ctrl = this.controls;
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: controls_1.GeometryParams, values: ctrl.behaviors.params.value, onChangeValues: function (xs) { return ctrl.behaviors.params.next(xs); }, isDisabled: this.state.busy }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.save, style: { marginTop: 1 }, disabled: this.state.busy || !((_c = this.plugin.canvas3d) === null || _c === void 0 ? void 0 : _c.reprCount.value) }, { children: "Save" }), void 0), this.isARSupported && ctrl.behaviors.params.value.format === 'usdz' &&
-                    (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.CubeScanSvg, onClick: this.viewInAR, style: { marginTop: 1 }, disabled: this.state.busy || !((_d = this.plugin.canvas3d) === null || _d === void 0 ? void 0 : _d.reprCount.value) }, { children: "View in AR" }), void 0)] }, void 0);
+        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: controls_1.GeometryParams, values: ctrl.behaviors.params.value, onChangeValues: function (xs) { return ctrl.behaviors.params.next(xs); }, isDisabled: this.state.busy }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.GetAppSvg, onClick: this.save, style: { marginTop: 1 }, disabled: this.state.busy || !((_c = this.plugin.canvas3d) === null || _c === void 0 ? void 0 : _c.reprCount.value) }, { children: "Save" })), this.isARSupported && ctrl.behaviors.params.value.format === 'usdz' &&
+                    (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.CubeScanSvg, onClick: this.viewInAR, style: { marginTop: 1 }, disabled: this.state.busy || !((_d = this.plugin.canvas3d) === null || _d === void 0 ? void 0 : _d.reprCount.value) }, { children: "View in AR" }))] });
     };
     GeometryExporterUI.prototype.componentDidMount = function () {
         var _this = this;

package/lib/commonjs/extensions/geo-export/usdz-exporter.js

@@ -21,7 +21,7 @@ var v3transformMat4 = linear_algebra_1.Vec3.transformMat4;
 var v3transformMat3 = linear_algebra_1.Vec3.transformMat3;
 var mat3directionTransform = linear_algebra_1.Mat3.directionTransform;
 var UsdzExporter = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(UsdzExporter, _super);
+    tslib_1.__extends(UsdzExporter, _super);
     function UsdzExporter(boundingBox, radius) {
         var _this = _super.call(this) || this;
         _this.fileExtension = 'usdz';
@@ -47,9 +47,9 @@ var UsdzExporter = /** @class */ (function (_super) {
         return materialKey;
     };
     UsdzExporter.prototype.addMeshWithColors = function (input) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var mesh, values, isGeoTexture, webgl, ctx, t, n, tmpV, stride, colorType, overpaintType, transparencyType, uAlpha, aTransform, instanceCount, metalness, roughness, interpolatedColors, interpolatedOverpaint, stride_1, interpolatedTransparency, stride_2, _loop_1, this_1, instanceIndex;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         mesh = input.mesh, values = input.values, isGeoTexture = input.isGeoTexture, webgl = input.webgl, ctx = input.ctx;
@@ -81,7 +81,7 @@ var UsdzExporter = /** @class */ (function (_super) {
                         _a.sent();
                         _loop_1 = function (instanceIndex) {
                             var _b, vertices, normals, indices, groups, vertexCount, drawCount, vertexBuilder, normalBuilder, indexBuilder, i, i, geoData, i, v, quantizedColors, i, v, color, faceIndicesByMaterial, i, color, transparency, alpha, materialKey, faceIndices, materialBinding, materialKey, geomSubsets_1;
-                            return (0, tslib_1.__generator)(this, function (_c) {
+                            return tslib_1.__generator(this, function (_c) {
                                 switch (_c.label) {
                                     case 0:
                                         if (!ctx.shouldUpdate) return [3 /*break*/, 2];
@@ -182,14 +182,14 @@ var UsdzExporter = /** @class */ (function (_super) {
         });
     };
     UsdzExporter.prototype.getData = function (ctx) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var header, usda, usdaData, zipDataObj;
             var _a, _b;
-            return (0, tslib_1.__generator)(this, function (_c) {
+            return tslib_1.__generator(this, function (_c) {
                 switch (_c.label) {
                     case 0:
                         header = "#usda 1.0\n(\n    customLayerData = {\n        string creator = \"Mol* ".concat(version_1.PLUGIN_VERSION, "\"\n    }\n    metersPerUnit = 1\n)\n");
-                        usda = (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([header], this.materials, true), this.meshes, true).join('');
+                        usda = tslib_1.__spreadArray(tslib_1.__spreadArray([header], this.materials, true), this.meshes, true).join('');
                         usdaData = new Uint8Array(usda.length);
                         (0, ascii_1.asciiWrite)(usdaData, usda);
                         zipDataObj = (_a = {},
@@ -204,9 +204,9 @@ var UsdzExporter = /** @class */ (function (_super) {
         });
     };
     UsdzExporter.prototype.getBlob = function (ctx) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var usdz;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0: return [4 /*yield*/, this.getData(ctx)];
                     case 1:

package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js

@@ -27,7 +27,7 @@ exports.MAQualityAssessment = behavior_1.PluginBehavior.create({
         description: 'Data included in Model Archive files.'
     },
     ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
+        tslib_1.__extends(class_1, _super);
         function class_1() {
             var _this = _super !== null && _super.apply(this, arguments) || this;
             _this.provider = prop_1.QualityAssessmentProvider;
@@ -152,9 +152,9 @@ var confidentPLDDT = (0, structure_selection_query_1.StructureSelectionQuery)('C
 ]), {
     description: 'Select residues with a pLDDT > 70 (confident).',
     category: structure_selection_query_1.StructureSelectionCategory.Validation,
-    ensureCustomProperties: function (ctx, structure) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+    ensureCustomProperties: function (ctx, structure) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
         var _i, _a, m;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     _i = 0, _a = structure.models;
@@ -187,9 +187,9 @@ exports.QualityAssessmentPLDDTPreset = (0, representation_preset_1.StructureRepr
     params: function () { return representation_preset_1.StructureRepresentationPresetProvider.CommonParams; },
     apply: function (ref, params, plugin) {
         var _a;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var structureCell, structure, colorTheme;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         structureCell = mol_state_1.StateObjectRef.resolveAndCheck(plugin.state.data, ref);
@@ -197,7 +197,7 @@ exports.QualityAssessmentPLDDTPreset = (0, representation_preset_1.StructureRepr
                         if (!structureCell || !structure)
                             return [2 /*return*/, {}];
                         colorTheme = plddt_1.PLDDTConfidenceColorThemeProvider.name;
-                        return [4 /*yield*/, representation_preset_1.PresetStructureRepresentations.auto.apply(ref, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params), { theme: { globalName: colorTheme, focus: { name: colorTheme } } }), plugin)];
+                        return [4 /*yield*/, representation_preset_1.PresetStructureRepresentations.auto.apply(ref, tslib_1.__assign(tslib_1.__assign({}, params), { theme: { globalName: colorTheme, focus: { name: colorTheme } } }), plugin)];
                     case 1: return [2 /*return*/, _b.sent()];
                 }
             });
@@ -216,9 +216,9 @@ exports.QualityAssessmentQmeanPreset = (0, representation_preset_1.StructureRepr
     params: function () { return representation_preset_1.StructureRepresentationPresetProvider.CommonParams; },
     apply: function (ref, params, plugin) {
         var _a;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var structureCell, structure, colorTheme;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         structureCell = mol_state_1.StateObjectRef.resolveAndCheck(plugin.state.data, ref);
@@ -226,7 +226,7 @@ exports.QualityAssessmentQmeanPreset = (0, representation_preset_1.StructureRepr
                         if (!structureCell || !structure)
                             return [2 /*return*/, {}];
                         colorTheme = qmean_1.QmeanScoreColorThemeProvider.name;
-                        return [4 /*yield*/, representation_preset_1.PresetStructureRepresentations.auto.apply(ref, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params), { theme: { globalName: colorTheme, focus: { name: colorTheme } } }), plugin)];
+                        return [4 /*yield*/, representation_preset_1.PresetStructureRepresentations.auto.apply(ref, tslib_1.__assign(tslib_1.__assign({}, params), { theme: { globalName: colorTheme, focus: { name: colorTheme } } }), plugin)];
                     case 1: return [2 /*return*/, _b.sent()];
                 }
             });

package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js

@@ -86,9 +86,9 @@ exports.PLDDTConfidenceColorThemeProvider = {
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(getPLDDTConfidenceColorThemeParams({})),
     isApplicable: function (ctx) { var _a; return !!((_a = ctx.structure) === null || _a === void 0 ? void 0 : _a.models.some(function (m) { return prop_1.QualityAssessment.isApplicable(m, 'pLDDT'); })); },
     ensureCustomProperties: {
-        attach: function (ctx, data) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+        attach: function (ctx, data) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
             var _i, _a, m;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         if (!data.structure) return [3 /*break*/, 4];
@@ -108,9 +108,9 @@ exports.PLDDTConfidenceColorThemeProvider = {
                 }
             });
         }); },
-        detach: function (data) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+        detach: function (data) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
             var _i, _a, m;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 if (data.structure) {
                     for (_i = 0, _a = data.structure.models; _i < _a.length; _i++) {
                         m = _a[_i];

package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js

@@ -72,9 +72,9 @@ exports.QmeanScoreColorThemeProvider = {
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(getQmeanScoreColorThemeParams({})),
     isApplicable: function (ctx) { var _a; return !!((_a = ctx.structure) === null || _a === void 0 ? void 0 : _a.models.some(function (m) { return prop_1.QualityAssessment.isApplicable(m, 'qmean'); })); },
     ensureCustomProperties: {
-        attach: function (ctx, data) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+        attach: function (ctx, data) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
             var _i, _a, m;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         if (!data.structure) return [3 /*break*/, 4];
@@ -94,9 +94,9 @@ exports.QmeanScoreColorThemeProvider = {
                 }
             });
         }); },
-        detach: function (data) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+        detach: function (data) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
             var _i, _a, m;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 if (data.structure) {
                     for (_i = 0, _a = data.structure.models; _i < _a.length; _i++) {
                         m = _a[_i];

package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js

@@ -43,9 +43,9 @@ var QualityAssessment;
     }
     QualityAssessment.isApplicable = isApplicable;
     function obtain(ctx, model, props) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _a, ma_qa_metric, ma_qa_metric_local, model_id, label_asym_id, label_seq_id, metric_id, metric_value, index, localMetrics, localNames, i, il, name_1, i, il, labelAsymId, entityIndex, rI, name_2;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 if (!model || !mmcif_1.MmcifFormat.is(model.sourceData))
                     return [2 /*return*/, Empty];
                 _a = model.sourceData.data.db, ma_qa_metric = _a.ma_qa_metric, ma_qa_metric_local = _a.ma_qa_metric_local;
@@ -115,12 +115,12 @@ exports.QualityAssessmentProvider = custom_model_property_1.CustomModelProperty.
     defaultParams: exports.QualityAssessmentParams,
     getParams: function (data) { return exports.QualityAssessmentParams; },
     isApplicable: function (data) { return QualityAssessment.isApplicable(data); },
-    obtain: function (ctx, data, props) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+    obtain: function (ctx, data, props) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
         var p;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
-                    p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.QualityAssessmentParams)), props);
+                    p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.QualityAssessmentParams)), props);
                     return [4 /*yield*/, QualityAssessment.obtain(ctx, data, p)];
                 case 1: return [2 /*return*/, _a.sent()];
             }

package/lib/commonjs/extensions/model-export/export.js

@@ -14,9 +14,9 @@ var date_1 = require("../../mol-util/date");
 var download_1 = require("../../mol-util/download");
 var zip_1 = require("../../mol-util/zip/zip");
 function exportHierarchy(plugin, options) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var e_1;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     _a.trys.push([0, 2, , 3]);
@@ -37,10 +37,10 @@ function exportHierarchy(plugin, options) {
 exports.exportHierarchy = exportHierarchy;
 function _exportHierarchy(plugin, options) {
     var _this = this;
-    return mol_task_1.Task.create('Export', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return mol_task_1.Task.create('Export', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var format, structures, files, entryMap, _i, structures_1, _s, s, name_1, zipData, _a, files_1, _b, fn, data, bytes, buffer;
         var _c, _d, _e, _f, _g, _h, _j, _k;
-        return (0, tslib_1.__generator)(this, function (_l) {
+        return tslib_1.__generator(this, function (_l) {
             switch (_l.label) {
                 case 0: return [4 /*yield*/, ctx.update({ message: 'Exporting...', isIndeterminate: true, canAbort: false })];
                 case 1:

package/lib/commonjs/extensions/model-export/index.js

@@ -16,7 +16,7 @@ exports.ModelExport = behavior_1.PluginBehavior.create({
         name: 'Model Export'
     },
     ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
+        tslib_1.__extends(class_1, _super);
         function class_1() {
             return _super !== null && _super.apply(this, arguments) || this;
         }

package/lib/commonjs/extensions/model-export/ui.js

@@ -17,7 +17,7 @@ var use_behavior_1 = require("../../mol-plugin-ui/hooks/use-behavior");
 var param_definition_1 = require("../../mol-util/param-definition");
 var export_1 = require("./export");
 var ModelExportUI = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(ModelExportUI, _super);
+    tslib_1.__extends(ModelExportUI, _super);
     function ModelExportUI() {
         return _super !== null && _super.apply(this, arguments) || this;
     }
@@ -29,7 +29,7 @@ var ModelExportUI = /** @class */ (function (_super) {
         };
     };
     ModelExportUI.prototype.renderControls = function () {
-        return (0, jsx_runtime_1.jsx)(ExportControls, { plugin: this.plugin }, void 0);
+        return (0, jsx_runtime_1.jsx)(ExportControls, { plugin: this.plugin });
     };
     return ModelExportUI;
 }(base_1.CollapsableControls));
@@ -53,8 +53,8 @@ function ExportControls(_a) {
     if (hierarchy.structures.length > 1) {
         label = 'Export (as ZIP)';
     }
-    var onExport = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    var onExport = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     setExporting(true);
@@ -72,5 +72,5 @@ function ExportControls(_a) {
             }
         });
     }); };
-    return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: Params, values: params, onChangeValues: setParams, isDisabled: isBusy || exporting }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: onExport, style: { marginTop: 1 }, disabled: isBusy || hierarchy.structures.length === 0 || exporting, commit: hierarchy.structures.length ? 'on' : 'off' }, { children: label }), void 0)] }, void 0);
+    return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: Params, values: params, onChangeValues: setParams, isDisabled: isBusy || exporting }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ onClick: onExport, style: { marginTop: 1 }, disabled: isBusy || hierarchy.structures.length === 0 || exporting, commit: hierarchy.structures.length ? 'on' : 'off' }, { children: label }))] });
 }

package/lib/commonjs/extensions/mp4-export/controls.js

@@ -16,7 +16,7 @@ exports.Mp4AnimationParams = {
     quantization: param_definition_1.ParamDefinition.Numeric(18, { min: 10, max: 51 }, { description: 'Lower is better, but slower.' })
 };
 var Mp4Controls = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(Mp4Controls, _super);
+    tslib_1.__extends(Mp4Controls, _super);
     function Mp4Controls(plugin) {
         var _this = _super.call(this) || this;
         _this.plugin = plugin;
@@ -45,7 +45,7 @@ var Mp4Controls = /** @class */ (function (_super) {
         this.behaviors.canApply.next((_b = (_a = anim.canApply) === null || _a === void 0 ? void 0 : _a.call(anim, this.plugin)) !== null && _b !== void 0 ? _b : { canApply: true });
     };
     Mp4Controls.prototype.setCurrentParams = function (values) {
-        this.behaviors.current.next((0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.behaviors.current.value), { values: values }));
+        this.behaviors.current.next(tslib_1.__assign(tslib_1.__assign({}, this.behaviors.current.value), { values: values }));
     };
     Object.defineProperty(Mp4Controls.prototype, "current", {
         get: function () {
@@ -56,16 +56,16 @@ var Mp4Controls = /** @class */ (function (_super) {
     });
     Mp4Controls.prototype.render = function () {
         var _this = this;
-        var task = mol_task_1.Task.create('Export Animation', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        var task = mol_task_1.Task.create('Export Animation', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var resolution, anim, movie, filename, e_1;
             var _a, _b, _c;
-            return (0, tslib_1.__generator)(this, function (_d) {
+            return tslib_1.__generator(this, function (_d) {
                 switch (_d.label) {
                     case 0:
                         _d.trys.push([0, 2, , 3]);
                         resolution = (_a = this.plugin.helpers.viewportScreenshot) === null || _a === void 0 ? void 0 : _a.getSizeAndViewport();
                         anim = this.current;
-                        return [4 /*yield*/, (0, encoder_1.encodeMp4Animation)(this.plugin, ctx, (0, tslib_1.__assign)((0, tslib_1.__assign)({ animation: {
+                        return [4 /*yield*/, (0, encoder_1.encodeMp4Animation)(this.plugin, ctx, tslib_1.__assign(tslib_1.__assign({ animation: {
                                     definition: anim.anim,
                                     params: anim.values,
                                 } }, resolution), { quantizationParameter: this.behaviors.params.value.quantization, pass: (_b = this.plugin.helpers.viewportScreenshot) === null || _b === void 0 ? void 0 : _b.imagePass }))];

package/lib/commonjs/extensions/mp4-export/encoder.js

@@ -7,13 +7,13 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.encodeMp4Animation = void 0;
 var tslib_1 = require("tslib");
-var HME = (0, tslib_1.__importStar)(require("h264-mp4-encoder"));
+var HME = tslib_1.__importStar(require("h264-mp4-encoder"));
 var model_1 = require("../../mol-plugin-state/animation/model");
 function encodeMp4Animation(plugin, ctx, params) {
     var _a, _b, _c;
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var durationMs, encoder, width, height, vw, vh, normalizedViewport, loop, canvasProps, wasAnimating, stoppedAnimation, finalized, fps, N, dt, i, image;
-        return (0, tslib_1.__generator)(this, function (_d) {
+        return tslib_1.__generator(this, function (_d) {
             switch (_d.label) {
                 case 0: return [4 /*yield*/, ctx.update({ message: 'Initializing...', isIndeterminate: true })];
                 case 1:
@@ -33,7 +33,7 @@ function encodeMp4Animation(plugin, ctx, params) {
                         vw -= 1;
                     if (vh % 2 !== 0)
                         vh -= 1;
-                    normalizedViewport = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params.viewport), { width: vw, height: vh });
+                    normalizedViewport = tslib_1.__assign(tslib_1.__assign({}, params.viewport), { width: vw, height: vh });
                     encoder.width = vw;
                     encoder.height = vh;
                     if (params.quantizationParameter)

package/lib/commonjs/extensions/mp4-export/index.js

@@ -16,7 +16,7 @@ exports.Mp4Export = behavior_1.PluginBehavior.create({
         name: 'MP4 Animation Export'
     },
     ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
+        tslib_1.__extends(class_1, _super);
         function class_1() {
             return _super !== null && _super.apply(this, arguments) || this;
         }

package/lib/commonjs/extensions/mp4-export/ui.js

@@ -17,15 +17,15 @@ var parameters_1 = require("../../mol-plugin-ui/controls/parameters");
 var download_1 = require("../../mol-util/download");
 var controls_1 = require("./controls");
 var Mp4EncoderUI = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(Mp4EncoderUI, _super);
+    tslib_1.__extends(Mp4EncoderUI, _super);
     function Mp4EncoderUI() {
         var _this = _super !== null && _super.apply(this, arguments) || this;
         _this.save = function () {
             (0, download_1.download)(new Blob([_this.state.data.movie]), _this.state.data.filename);
         };
-        _this.generate = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+        _this.generate = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
             var data, e_1;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         _a.trys.push([0, 2, , 3]);
@@ -62,7 +62,7 @@ var Mp4EncoderUI = /** @class */ (function (_super) {
     };
     Mp4EncoderUI.prototype.downloadControls = function () {
         var _this = this;
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-help-description', style: { textAlign: 'center' } }, { children: "Rendering successful!" }), void 0) }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.save, style: { marginTop: 1 } }, { children: "Save Animation" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: function () { return _this.setState({ data: void 0 }); }, style: { marginTop: 6 } }, { children: "Clear" }), void 0)] }, void 0);
+        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-help-description', style: { textAlign: 'center' } }, { children: "Rendering successful!" })) })), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.GetAppSvg, onClick: this.save, style: { marginTop: 1 } }, { children: "Save Animation" })), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ onClick: function () { return _this.setState({ data: void 0 }); }, style: { marginTop: 6 } }, { children: "Clear" }))] });
     };
     Mp4EncoderUI.prototype.renderControls = function () {
         var _a;
@@ -73,7 +73,7 @@ var Mp4EncoderUI = /** @class */ (function (_super) {
         var current = ctrl.behaviors.current.value;
         var info = ctrl.behaviors.info.value;
         var canApply = ctrl.behaviors.canApply.value;
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: ctrl.behaviors.animations.value, values: { current: current === null || current === void 0 ? void 0 : current.anim.name }, onChangeValues: function (xs) { return ctrl.setCurrent(xs.current); }, isDisabled: this.state.busy }, void 0), current && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: current.params, values: current.values, onChangeValues: function (xs) { return ctrl.setCurrentParams(xs); }, isDisabled: this.state.busy }, void 0), (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-help-description', style: { textAlign: 'center' } }, { children: ["Resolution: ", info.width, "x", info.height, (0, jsx_runtime_1.jsx)("br", {}, void 0), "Adjust in viewport using ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.CameraOutlinedSvg, inline: true }, void 0)] }), void 0) }), void 0), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: controls_1.Mp4AnimationParams, values: ctrl.behaviors.params.value, onChangeValues: function (xs) { return ctrl.behaviors.params.next(xs); }, isDisabled: this.state.busy }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: this.generate, style: { marginTop: 1 }, disabled: this.state.busy || !canApply.canApply, commit: canApply.canApply ? 'on' : 'off' }, { children: canApply.canApply ? 'Render' : (_a = canApply.reason) !== null && _a !== void 0 ? _a : 'Invalid params/state' }), void 0)] }, void 0);
+        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: ctrl.behaviors.animations.value, values: { current: current === null || current === void 0 ? void 0 : current.anim.name }, onChangeValues: function (xs) { return ctrl.setCurrent(xs.current); }, isDisabled: this.state.busy }), current && (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: current.params, values: current.values, onChangeValues: function (xs) { return ctrl.setCurrentParams(xs); }, isDisabled: this.state.busy }), (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset msp-help-text' }, { children: (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-help-description', style: { textAlign: 'center' } }, { children: ["Resolution: ", info.width, "x", info.height, (0, jsx_runtime_1.jsx)("br", {}), "Adjust in viewport using ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.CameraOutlinedSvg, inline: true })] })) })), (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: controls_1.Mp4AnimationParams, values: ctrl.behaviors.params.value, onChangeValues: function (xs) { return ctrl.behaviors.params.next(xs); }, isDisabled: this.state.busy }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ onClick: this.generate, style: { marginTop: 1 }, disabled: this.state.busy || !canApply.canApply, commit: canApply.canApply ? 'on' : 'off' }, { children: canApply.canApply ? 'Render' : (_a = canApply.reason) !== null && _a !== void 0 ? _a : 'Invalid params/state' }))] });
     };
     Mp4EncoderUI.prototype.componentDidMount = function () {
         var _this = this;

package/lib/commonjs/extensions/pdbe/preferred-assembly.js

@@ -54,9 +54,9 @@ var PDBePreferredAssembly;
         return (0, schema_1.toTable)(PDBePreferredAssembly.Schema.pdbe_preferred_assembly, cat).assembly_id.value(0) || getFirstFromModel(model);
     }
     function attachFromCifOrApi(model, params) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var asmName, data;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         if (model.customProperties.has(PDBePreferredAssembly.Descriptor))

package/lib/commonjs/extensions/pdbe/struct-ref-domain.js

@@ -64,9 +64,9 @@ var PDBeStructRefDomain;
         return (0, schema_1.toTable)(PDBeStructRefDomain.Schema.pdbe_struct_ref_domain, cat);
     }
     function attachFromCifOrApi(model, params) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var table, info, data;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         if (model.customProperties.has(PDBeStructRefDomain.Descriptor))

package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js

@@ -21,7 +21,7 @@ exports.PDBeStructureQualityReport = behavior_1.PluginBehavior.create({
         description: 'Data from wwPDB Validation Report, obtained via PDBe.'
     },
     ctor: /** @class */ (function (_super) {
-        (0, tslib_1.__extends)(class_1, _super);
+        tslib_1.__extends(class_1, _super);
         function class_1() {
             var _this = _super !== null && _super.apply(this, arguments) || this;
             _this.provider = prop_1.StructureQualityReportProvider;

package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js

@@ -39,7 +39,7 @@ var StructureQualityReport;
         pdbe_structure_quality_report: {
             updated_datetime_utc: db_1.Column.Schema.str
         },
-        pdbe_structure_quality_report_issues: (0, tslib_1.__assign)((0, tslib_1.__assign)({ id: db_1.Column.Schema.int }, mmcif_extras_1.mmCIF_residueId_schema), { pdbx_PDB_model_num: db_1.Column.Schema.int, issue_type_group_id: db_1.Column.Schema.int }),
+        pdbe_structure_quality_report_issues: tslib_1.__assign(tslib_1.__assign({ id: db_1.Column.Schema.int }, mmcif_extras_1.mmCIF_residueId_schema), { pdbx_PDB_model_num: db_1.Column.Schema.int, issue_type_group_id: db_1.Column.Schema.int }),
         pdbe_structure_quality_report_issue_types: {
             group_id: db_1.Column.Schema.int,
             issue_type: db_1.Column.Schema.str
@@ -52,9 +52,9 @@ var StructureQualityReport;
     }
     StructureQualityReport.fromJson = fromJson;
     function fromServer(ctx, model, props) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var url, json, data;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         url = assets_1.Asset.getUrlAsset(ctx.assetManager, getEntryUrl(model.entryId, props.serverUrl));
@@ -80,9 +80,9 @@ var StructureQualityReport;
     }
     StructureQualityReport.fromCif = fromCif;
     function fromCifOrServer(ctx, model, props) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var cif;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 cif = fromCif(ctx, model, props);
                 return [2 /*return*/, cif ? { value: cif } : fromServer(ctx, model, props)];
             });
@@ -158,12 +158,12 @@ exports.StructureQualityReportProvider = custom_model_property_1.CustomModelProp
     defaultParams: exports.StructureQualityReportParams,
     getParams: function (data) { return exports.StructureQualityReportParams; },
     isApplicable: function (data) { return StructureQualityReport.isApplicable(data); },
-    obtain: function (ctx, data, props) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+    obtain: function (ctx, data, props) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
         var p;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
-                    p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.StructureQualityReportParams)), props);
+                    p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.StructureQualityReportParams)), props);
                     return [4 /*yield*/, StructureQualityReport.fromCifOrServer(ctx, data, p)];
                 case 1: return [2 /*return*/, _a.sent()];
             }