molstar 3.3.1 → 3.4.0

package/lib/commonjs/examples/basic-wrapper/index.js

@@ -36,12 +36,12 @@ var BasicWrapper = /** @class */ (function () {
             }
         };
         this.coloring = {
-            applyStripes: function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            applyStripes: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                 var _this = this;
-                return (0, tslib_1.__generator)(this, function (_a) {
-                    this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_a) {
+                    this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                         var _i, _a, s;
-                        return (0, tslib_1.__generator)(this, function (_b) {
+                        return tslib_1.__generator(this, function (_b) {
                             switch (_b.label) {
                                 case 0:
                                     _i = 0, _a = this.plugin.managers.structure.hierarchy.current.structures;
@@ -63,12 +63,12 @@ var BasicWrapper = /** @class */ (function () {
                     return [2 /*return*/];
                 });
             }); },
-            applyCustomTheme: function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            applyCustomTheme: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                 var _this = this;
-                return (0, tslib_1.__generator)(this, function (_a) {
-                    this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_a) {
+                    this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                         var _i, _a, s;
-                        return (0, tslib_1.__generator)(this, function (_b) {
+                        return tslib_1.__generator(this, function (_b) {
                             switch (_b.label) {
                                 case 0:
                                     _i = 0, _a = this.plugin.managers.structure.hierarchy.current.structures;
@@ -90,12 +90,12 @@ var BasicWrapper = /** @class */ (function () {
                     return [2 /*return*/];
                 });
             }); },
-            applyDefault: function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            applyDefault: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                 var _this = this;
-                return (0, tslib_1.__generator)(this, function (_a) {
-                    this.plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_a) {
+                    this.plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                         var _i, _a, s;
-                        return (0, tslib_1.__generator)(this, function (_b) {
+                        return tslib_1.__generator(this, function (_b) {
                             switch (_b.label) {
                                 case 0:
                                     _i = 0, _a = this.plugin.managers.structure.hierarchy.current.structures;
@@ -137,8 +137,8 @@ var BasicWrapper = /** @class */ (function () {
             }
         };
         this.tests = {
-            staticSuperposition: function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-                return (0, tslib_1.__generator)(this, function (_a) {
+            staticSuperposition: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_a) {
                     switch (_a.label) {
                         case 0: return [4 /*yield*/, this.plugin.clear()];
                         case 1:
@@ -147,8 +147,8 @@ var BasicWrapper = /** @class */ (function () {
                     }
                 });
             }); },
-            dynamicSuperposition: function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-                return (0, tslib_1.__generator)(this, function (_a) {
+            dynamicSuperposition: function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                return tslib_1.__generator(this, function (_a) {
                     switch (_a.label) {
                         case 0: return [4 /*yield*/, this.plugin.clear()];
                         case 1:
@@ -180,13 +180,13 @@ var BasicWrapper = /** @class */ (function () {
         };
     }
     BasicWrapper.prototype.init = function (target) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _a;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         _a = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
+                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
                                     initial: {
                                         isExpanded: false,
                                         showControls: false
@@ -207,9 +207,9 @@ var BasicWrapper = /** @class */ (function () {
     };
     BasicWrapper.prototype.load = function (_a) {
         var url = _a.url, _b = _a.format, format = _b === void 0 ? 'mmcif' : _b, _c = _a.isBinary, isBinary = _c === void 0 ? false : _c, _d = _a.assemblyId, assemblyId = _d === void 0 ? '' : _d;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var data, trajectory;
-            return (0, tslib_1.__generator)(this, function (_e) {
+            return tslib_1.__generator(this, function (_e) {
                 switch (_e.label) {
                     case 0: return [4 /*yield*/, this.plugin.clear()];
                     case 1:
@@ -247,7 +247,7 @@ var BasicWrapper = /** @class */ (function () {
         var trackball = this.plugin.canvas3d.props.trackball;
         commands_1.PluginCommands.Canvas3D.SetSettings(this.plugin, {
             settings: {
-                trackball: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, trackball), { animate: trackball.animate.name === 'spin'
+                trackball: tslib_1.__assign(tslib_1.__assign({}, trackball), { animate: trackball.animate.name === 'spin'
                         ? { name: 'off', params: {} }
                         : { name: 'spin', params: { speed: 1 } } })
             }

package/lib/commonjs/examples/basic-wrapper/superposition.js

@@ -16,9 +16,9 @@ var transforms_1 = require("../../mol-plugin-state/transforms");
 var assets_1 = require("../../mol-util/assets");
 function buildStaticSuperposition(plugin, src) {
     var _this = this;
-    return plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var _i, src_1, s, structure, chain;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     _i = 0, src_1 = src;
@@ -72,9 +72,9 @@ exports.StaticSuperpositionTestData = [
 ];
 function dynamicSuperpositionTest(plugin, src, comp_id) {
     var _this = this;
-    return plugin.dataTransaction(function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return plugin.dataTransaction(function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var _i, src_2, s, pivot, rest, query, xs, selections, transforms, i;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     _i = 0, src_2 = src;
@@ -131,9 +131,9 @@ function dynamicSuperpositionTest(plugin, src, comp_id) {
 }
 exports.dynamicSuperpositionTest = dynamicSuperpositionTest;
 function siteVisual(plugin, s, pivot, rest) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var center, surr;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, plugin.builders.structure.tryCreateComponentFromExpression(s, pivot, 'pivot')];
                 case 1:
@@ -157,9 +157,9 @@ function siteVisual(plugin, s, pivot, rest) {
     });
 }
 function loadStructure(plugin, url, format, assemblyId) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var data, trajectory, model, structure;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, plugin.builders.data.download({ url: assets_1.Asset.Url(url) })];
                 case 1:

package/lib/commonjs/examples/domain-annotation-server/mapping.js

@@ -9,7 +9,7 @@ exports.createMapping = void 0;
 var tslib_1 = require("tslib");
 var db_1 = require("../../mol-data/db");
 var cif_1 = require("../../mol-io/writer/cif");
-var S = (0, tslib_1.__importStar)(require("./schemas"));
+var S = tslib_1.__importStar(require("./schemas"));
 // import { getCategoryInstanceProvider } from './utils'
 function createMapping(allData) {
     var mols = Object.keys(allData);
@@ -85,7 +85,7 @@ function getDomainInfo(id, mapping_group_id, data, schema) {
         var k = _a[_i];
         props[k] = data[k];
     }
-    return (0, tslib_1.__assign)({ id: id, mapping_group_id: mapping_group_id, identifier: data.identifier }, props);
+    return tslib_1.__assign({ id: id, mapping_group_id: mapping_group_id, identifier: data.identifier }, props);
 }
 function getDomain(name, schema, allData) {
     if (!allData[name])
@@ -104,7 +104,7 @@ function getDomain(name, schema, allData) {
     }
     return domains.length > 0 ? {
         name: name,
-        domains: db_1.Table.ofRows((0, tslib_1.__assign)((0, tslib_1.__assign)({}, S.Base), schema), domains),
+        domains: db_1.Table.ofRows(tslib_1.__assign(tslib_1.__assign({}, S.Base), schema), domains),
         mappings: db_1.Table.ofRows(S.mapping, mappings)
     } : void 0;
 }

package/lib/commonjs/examples/domain-annotation-server/server.js

@@ -6,13 +6,13 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var express_1 = (0, tslib_1.__importDefault)(require("express"));
-var node_fetch_1 = (0, tslib_1.__importDefault)(require("node-fetch"));
+var express_1 = tslib_1.__importDefault(require("express"));
+var node_fetch_1 = tslib_1.__importDefault(require("node-fetch"));
 var mapping_1 = require("./mapping");
 function getMappings(id) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var data, json;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, node_fetch_1.default)("https://www.ebi.ac.uk/pdbe/api/mappings/".concat(id))];
                 case 1:
@@ -29,9 +29,9 @@ function getMappings(id) {
 var PORT = process.env.port || 1338;
 var app = (0, express_1.default)();
 var PREFIX = '/';
-app.get("".concat(PREFIX, "/:id"), function (req, res) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+app.get("".concat(PREFIX, "/:id"), function (req, res) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
     var mapping, _a;
-    return (0, tslib_1.__generator)(this, function (_b) {
+    return tslib_1.__generator(this, function (_b) {
         switch (_b.label) {
             case 0:
                 _b.trys.push([0, 2, , 3]);

package/lib/commonjs/examples/domain-annotation-server/test.js

@@ -6,12 +6,12 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var node_fetch_1 = (0, tslib_1.__importDefault)(require("node-fetch"));
+var node_fetch_1 = tslib_1.__importDefault(require("node-fetch"));
 var mapping_1 = require("./mapping");
 (function () {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var data, json;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, node_fetch_1.default)('https://www.ebi.ac.uk/pdbe/api/mappings/1tqn?pretty=true')];
                 case 1:

package/lib/commonjs/examples/lighting/index.js

@@ -60,13 +60,13 @@ var LightingDemo = /** @class */ (function () {
         this.preset = 'illustrative';
     }
     LightingDemo.prototype.init = function (target) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _a;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         _a = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
+                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { layout: {
                                     initial: {
                                         isExpanded: false,
                                         showControls: false
@@ -90,14 +90,14 @@ var LightingDemo = /** @class */ (function () {
             props.canvas3d.postprocessing.occlusion.params.bias = this.bias;
         }
         commands_1.PluginCommands.Canvas3D.SetSettings(this.plugin, {
-            settings: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props), { renderer: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.plugin.canvas3d.props.renderer), props.canvas3d.renderer), postprocessing: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, this.plugin.canvas3d.props.postprocessing), props.canvas3d.postprocessing) })
+            settings: tslib_1.__assign(tslib_1.__assign({}, props), { renderer: tslib_1.__assign(tslib_1.__assign({}, this.plugin.canvas3d.props.renderer), props.canvas3d.renderer), postprocessing: tslib_1.__assign(tslib_1.__assign({}, this.plugin.canvas3d.props.postprocessing), props.canvas3d.postprocessing) })
         });
     };
     LightingDemo.prototype.load = function (_a, radius, bias) {
         var url = _a.url, _b = _a.format, format = _b === void 0 ? 'mmcif' : _b, _c = _a.isBinary, isBinary = _c === void 0 ? true : _c, _d = _a.assemblyId, assemblyId = _d === void 0 ? '' : _d;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var data, trajectory, model, structure, polymer, ligand;
-            return (0, tslib_1.__generator)(this, function (_e) {
+            return tslib_1.__generator(this, function (_e) {
                 switch (_e.label) {
                     case 0: return [4 /*yield*/, this.plugin.clear()];
                     case 1:

package/lib/commonjs/examples/proteopedia-wrapper/annotation.js

@@ -33,9 +33,9 @@ exports.EvolutionaryConservation = custom_element_property_1.CustomElementProper
     type: 'static',
     getData: function (model, ctx) {
         var _a;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var id, url, json, annotations, conservationMap, _i, annotations_1, e, _b, _c, r, map, residueCount, residueOffsets, chainIndex, rI, cI, key, ann, aI;
-            return (0, tslib_1.__generator)(this, function (_d) {
+            return tslib_1.__generator(this, function (_d) {
                 switch (_d.label) {
                     case 0:
                         id = model.entryId.toLowerCase();

package/lib/commonjs/examples/proteopedia-wrapper/helpers.js

@@ -11,9 +11,9 @@ var symmetry_1 = require("../../mol-model-formats/structure/property/symmetry");
 var ModelInfo;
 (function (ModelInfo) {
     function getPreferredAssembly(ctx, model) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var id, src, json, data, assemblies, _i, assemblies_1, asm, e_1;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         if (model.entryId.length <= 3)
@@ -47,9 +47,9 @@ var ModelInfo;
         });
     }
     function get(ctx, model, checkPreferred) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var residueCount, residueOffsets, chainIndex, pref, hetResidues, hetMap, rI, cI, eI, entityType, comp_id, lig, preferredAssemblyId, symmetry;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         residueCount = model.atomicHierarchy.residues._rowCount;

package/lib/commonjs/examples/proteopedia-wrapper/index.js

@@ -6,7 +6,7 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var ReactDOM = (0, tslib_1.__importStar)(require("react-dom"));
+var ReactDOM = tslib_1.__importStar(require("react-dom"));
 var canvas3d_1 = require("../../mol-canvas3d/canvas3d");
 var model_index_1 = require("../../mol-plugin-state/animation/built-in/model-index");
 var structure_representation_params_1 = require("../../mol-plugin-state/helpers/structure-representation-params");
@@ -60,9 +60,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
             }
         };
         this.coloring = {
-            evolutionaryConservation: function (params) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            evolutionaryConservation: function (params) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                 var state, tree, colorTheme;
-                return (0, tslib_1.__generator)(this, function (_a) {
+                return tslib_1.__generator(this, function (_a) {
                     switch (_a.label) {
                         case 0:
                             if (!(!params || !params.keepStyle)) return [3 /*break*/, 2];
@@ -75,10 +75,10 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
                             tree = state.build();
                             colorTheme = { name: annotation_1.EvolutionaryConservation.propertyProvider.descriptor.name, params: this.plugin.representation.structure.themes.colorThemeRegistry.get(annotation_1.EvolutionaryConservation.propertyProvider.descriptor.name).defaultValues };
                             if (!params || !!params.sequence) {
-                                tree.to(helpers_1.StateElements.SequenceVisual).update(transforms_1.StateTransforms.Representation.StructureRepresentation3D, function (old) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, old), { colorTheme: colorTheme })); });
+                                tree.to(helpers_1.StateElements.SequenceVisual).update(transforms_1.StateTransforms.Representation.StructureRepresentation3D, function (old) { return (tslib_1.__assign(tslib_1.__assign({}, old), { colorTheme: colorTheme })); });
                             }
                             if (params && !!params.het) {
-                                tree.to(helpers_1.StateElements.HetVisual).update(transforms_1.StateTransforms.Representation.StructureRepresentation3D, function (old) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, old), { colorTheme: colorTheme })); });
+                                tree.to(helpers_1.StateElements.HetVisual).update(transforms_1.StateTransforms.Representation.StructureRepresentation3D, function (old) { return (tslib_1.__assign(tslib_1.__assign({}, old), { colorTheme: colorTheme })); });
                             }
                             return [4 /*yield*/, commands_1.PluginCommands.State.Update(this.plugin, { state: state, tree: tree })];
                         case 3:
@@ -90,9 +90,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
         };
         this.experimentalDataElement = void 0;
         this.experimentalData = {
-            init: function (parent) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            init: function (parent) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                 var asm, params;
-                return (0, tslib_1.__generator)(this, function (_a) {
+                return tslib_1.__generator(this, function (_a) {
                     switch (_a.label) {
                         case 0:
                             asm = this.state.select(helpers_1.StateElements.Assembly)[0].obj;
@@ -127,9 +127,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
                 commands_1.PluginCommands.State.Update(_this.plugin, { state: _this.state, tree: update });
                 commands_1.PluginCommands.Camera.Reset(_this.plugin, {});
             },
-            focusFirst: function (compId, options) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+            focusFirst: function (compId, options) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
                 var update, core, surroundings, group, asm, coreSel, waters, exclude, onlySurroundings, focus, sphere, radius, snapshot;
-                return (0, tslib_1.__generator)(this, function (_a) {
+                return tslib_1.__generator(this, function (_a) {
                     switch (_a.label) {
                         case 0:
                             if (!this.state.transforms.has(helpers_1.StateElements.Assembly))
@@ -196,9 +196,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
             },
             download: function (type, params) {
                 if (type === void 0) { type = 'molj'; }
-                return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                return tslib_1.__awaiter(_this, void 0, void 0, function () {
                     var data;
-                    return (0, tslib_1.__generator)(this, function (_a) {
+                    return tslib_1.__generator(this, function (_a) {
                         switch (_a.label) {
                             case 0: return [4 /*yield*/, this.plugin.managers.snapshot.serialize({ type: type, params: params })];
                             case 1:
@@ -211,16 +211,16 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
             },
             fetch: function (url, type) {
                 if (type === void 0) { type = 'molj'; }
-                return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+                return tslib_1.__awaiter(_this, void 0, void 0, function () {
                     var data, e_1;
-                    return (0, tslib_1.__generator)(this, function (_a) {
+                    return tslib_1.__generator(this, function (_a) {
                         switch (_a.label) {
                             case 0:
                                 _a.trys.push([0, 3, , 4]);
                                 return [4 /*yield*/, this.plugin.runTask(this.plugin.fetch({ url: url, type: 'binary' }))];
                             case 1:
                                 data = _a.sent();
-                                this.loadedParams = (0, tslib_1.__assign)({}, this.emptyLoadedParams);
+                                this.loadedParams = tslib_1.__assign({}, this.emptyLoadedParams);
                                 return [4 /*yield*/, this.plugin.managers.snapshot.open(new File([data], "state.".concat(type)))];
                             case 2: return [2 /*return*/, _a.sent()];
                             case 3:
@@ -235,13 +235,13 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
         };
     }
     MolStarProteopediaWrapper.prototype.init = function (target, options) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var _a, customColoring;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0:
                         _a = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, (0, spec_1.DefaultPluginUISpec)()), { animations: [
+                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, (0, spec_1.DefaultPluginUISpec)()), { animations: [
                                     model_index_1.AnimateModelIndex
                                 ], layout: {
                                     initial: {
@@ -370,9 +370,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
         return cell.obj.data;
     };
     MolStarProteopediaWrapper.prototype.doInfo = function (checkPreferredAssembly) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var model, info;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         model = this.getObj('model');
@@ -392,9 +392,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
     };
     MolStarProteopediaWrapper.prototype.load = function (_a) {
         var url = _a.url, _b = _a.format, format = _b === void 0 ? 'cif' : _b, _c = _a.assemblyId, assemblyId = _c === void 0 ? '' : _c, _d = _a.isBinary, isBinary = _d === void 0 ? false : _d, representationStyle = _a.representationStyle;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var loadType, state, modelTree, info, asmId, structureTree, tree, info, asmId, props_1;
-            return (0, tslib_1.__generator)(this, function (_e) {
+            return tslib_1.__generator(this, function (_e) {
                 switch (_e.label) {
                     case 0:
                         loadType = 'full';
@@ -438,7 +438,7 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
                                 params: {}
                             }
                         };
-                        tree.to(helpers_1.StateElements.Assembly).update(transforms_1.StateTransforms.Model.StructureFromModel, function (p) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, p), props_1)); });
+                        tree.to(helpers_1.StateElements.Assembly).update(transforms_1.StateTransforms.Model.StructureFromModel, function (p) { return (tslib_1.__assign(tslib_1.__assign({}, p), props_1)); });
                         return [4 /*yield*/, this.applyState(tree)];
                     case 7:
                         _e.sent();
@@ -453,9 +453,9 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
         });
     };
     MolStarProteopediaWrapper.prototype.updateStyle = function (style, partial) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var tree;
-            return (0, tslib_1.__generator)(this, function (_a) {
+            return tslib_1.__generator(this, function (_a) {
                 switch (_a.label) {
                     case 0:
                         tree = this.visual(style, partial);
@@ -473,7 +473,7 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
         if (!this.plugin.canvas3d)
             return;
         var renderer = this.plugin.canvas3d.props.renderer;
-        commands_1.PluginCommands.Canvas3D.SetSettings(this.plugin, { settings: { renderer: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, renderer), { backgroundColor: (0, color_1.Color)(color) }) } });
+        commands_1.PluginCommands.Canvas3D.SetSettings(this.plugin, { settings: { renderer: tslib_1.__assign(tslib_1.__assign({}, renderer), { backgroundColor: (0, color_1.Color)(color) }) } });
     };
     MolStarProteopediaWrapper.prototype.toggleSpin = function () {
         if (!this.plugin.canvas3d)
@@ -481,7 +481,7 @@ var MolStarProteopediaWrapper = /** @class */ (function () {
         var trackball = this.plugin.canvas3d.props.trackball;
         commands_1.PluginCommands.Canvas3D.SetSettings(this.plugin, {
             settings: {
-                trackball: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, trackball), { animate: trackball.animate.name === 'spin'
+                trackball: tslib_1.__assign(tslib_1.__assign({}, trackball), { animate: trackball.animate.name === 'spin'
                         ? { name: 'off', params: {} }
                         : { name: 'spin', params: { speed: 1 } } })
             }

package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js

@@ -8,11 +8,11 @@ var jsx_runtime_1 = require("react/jsx-runtime");
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */
-var ReactDOM = (0, tslib_1.__importStar)(require("react-dom"));
+var ReactDOM = tslib_1.__importStar(require("react-dom"));
 var plugin_1 = require("../../../mol-plugin-ui/plugin");
 var update_transform_1 = require("../../../mol-plugin-ui/state/update-transform");
 var helpers_1 = require("../helpers");
 function volumeStreamingControls(plugin, parent) {
-    ReactDOM.render((0, jsx_runtime_1.jsx)(plugin_1.PluginContextContainer, (0, tslib_1.__assign)({ plugin: plugin }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.TransformUpdaterControl, { nodeRef: helpers_1.StateElements.VolumeStreaming }, void 0) }), void 0), parent);
+    ReactDOM.render((0, jsx_runtime_1.jsx)(plugin_1.PluginContextContainer, tslib_1.__assign({ plugin: plugin }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.TransformUpdaterControl, { nodeRef: helpers_1.StateElements.VolumeStreaming }) })), parent);
 }
 exports.volumeStreamingControls = volumeStreamingControls;

package/lib/commonjs/examples/task.js

@@ -10,13 +10,13 @@ var tslib_1 = require("tslib");
 var mol_task_1 = require("../mol-task");
 var now_1 = require("../mol-util/now");
 function test1() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var t, r;
         var _this = this;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
-                    t = mol_task_1.Task.create('test', function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () { return (0, tslib_1.__generator)(this, function (_a) {
+                    t = mol_task_1.Task.create('test', function () { return tslib_1.__awaiter(_this, void 0, void 0, function () { return tslib_1.__generator(this, function (_a) {
                         return [2 /*return*/, 1];
                     }); }); });
                     return [4 /*yield*/, t.run()];
@@ -45,8 +45,8 @@ function messageTree(root, prefix) {
 }
 function createTask(delayMs, r) {
     var _this = this;
-    return mol_task_1.Task.create('delayed value ' + r, function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('delayed value ' + r, function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     ctx.update("Processing delayed ".concat(r, " after ").concat(delayMs, "ms"), true);
@@ -65,8 +65,8 @@ function createTask(delayMs, r) {
 }
 function abortAfter(delay) {
     var _this = this;
-    return mol_task_1.Task.create('abort after ' + delay, function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('abort after ' + delay, function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, mol_task_1.Scheduler.delay(delay)];
                 case 1:
@@ -79,9 +79,9 @@ function abortAfter(delay) {
 exports.abortAfter = abortAfter;
 function testTree() {
     var _this = this;
-    return mol_task_1.Task.create('test o', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return mol_task_1.Task.create('test o', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var c1, c2, c3, r, _a, _b;
-        return (0, tslib_1.__generator)(this, function (_c) {
+        return tslib_1.__generator(this, function (_c) {
             switch (_c.label) {
                 case 0: return [4 /*yield*/, mol_task_1.Scheduler.delay(250)];
                 case 1:
@@ -143,16 +143,16 @@ function processChunk(n, state) {
     state.current = toProcess;
     return toProcess - start;
 }
-exports.ms = (0, mol_task_1.MultistepTask)('ms-task', ['step 1', 'step 2', 'step 3'], function (p, step, ctx) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+exports.ms = (0, mol_task_1.MultistepTask)('ms-task', ['step 1', 'step 2', 'step 3'], function (p, step, ctx) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
     var child;
-    return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__generator(this, function (_a) {
         switch (_a.label) {
             case 0: return [4 /*yield*/, step(0)];
             case 1:
                 _a.sent();
-                child = mol_task_1.Task.create('chunked', function (ctx) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
+                child = mol_task_1.Task.create('chunked', function (ctx) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
                     var s;
-                    return (0, tslib_1.__generator)(this, function (_a) {
+                    return tslib_1.__generator(this, function (_a) {
                         switch (_a.label) {
                             case 0: return [4 /*yield*/, (0, mol_task_1.chunkedSubtask)(ctx, 25, { i: 0, current: 0, total: 125 }, processChunk, function (ctx, s, p) { return ctx.update('chunk test ' + p); })];
                             case 1:
@@ -196,9 +196,9 @@ exports.abortingObserver = abortingObserver;
 function logP(p) { console.log(messageTree(p.root)); }
 exports.logP = logP;
 function test() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var m, e_1;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     _a.trys.push([0, 2, , 3]);

package/lib/commonjs/extensions/alpha-orbitals/collocation.js

@@ -13,9 +13,9 @@ var linear_algebra_1 = require("../../mol-math/linear-algebra");
 var array_1 = require("../../mol-util/array");
 var spherical_functions_1 = require("./spherical-functions");
 function sphericalCollocation(grid, orbital, taskCtx) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _a, basis, sphericalOrder, cutoffThreshold, baseCount, _i, _b, atom, _c, _d, shell, _e, _f, L, matrix, baseIndex, _g, _h, atom, _j, _k, shell, amIndex, _l, _m, L, alpha;
-        return (0, tslib_1.__generator)(this, function (_o) {
+        return tslib_1.__generator(this, function (_o) {
             switch (_o.label) {
                 case 0:
                     _a = grid.params, basis = _a.basis, sphericalOrder = _a.sphericalOrder, cutoffThreshold = _a.cutoffThreshold;

package/lib/commonjs/extensions/alpha-orbitals/data-model.js

@@ -25,7 +25,7 @@ function initCubeGrid(params) {
     var count = geometry.length;
     var box = geometry_1.Box3D.expand((0, geometry_1.Box3D)(), geometry_1.Box3D.fromVec3Array((0, geometry_1.Box3D)(), geometry), linear_algebra_1.Vec3.create(expand, expand, expand));
     var size = geometry_1.Box3D.size((0, linear_algebra_1.Vec3)(), box);
-    var spacingThresholds = typeof spacing === 'number' ? [[0, spacing]] : (0, tslib_1.__spreadArray)([], spacing, true);
+    var spacingThresholds = typeof spacing === 'number' ? [[0, spacing]] : tslib_1.__spreadArray([], spacing, true);
     spacingThresholds.sort(function (a, b) { return b[0] - a[0]; });
     var s = 0.4;
     for (var i = 0; i <= spacingThresholds.length; i++) {

package/lib/commonjs/extensions/alpha-orbitals/density.js

@@ -14,9 +14,9 @@ var data_model_1 = require("./data-model");
 var compute_1 = require("./gpu/compute");
 function createSphericalCollocationDensityGrid(params, orbitals, webgl) {
     var _this = this;
-    return mol_task_1.Task.create('Spherical Collocation Grid', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
+    return mol_task_1.Task.create('Spherical Collocation Grid', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
         var cubeGrid, matrix, grid, isovalues;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     cubeGrid = (0, data_model_1.initCubeGrid)(params);

package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js

@@ -34,13 +34,13 @@ var Orbitals = (0, grid3d_1.createGrid3dComputeRenderable)({
     }
 });
 var Density = (0, grid3d_1.createGrid3dComputeRenderable)({
-    schema: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, Schema), { uOccupancy: (0, schema_1.UniformSpec)('f') }),
+    schema: tslib_1.__assign(tslib_1.__assign({}, Schema), { uOccupancy: (0, schema_1.UniformSpec)('f') }),
     loopBounds: ['uNCenters', 'uMaxCoeffs'],
     mainCode: shader_frag_1.MAIN,
     utilCode: shader_frag_1.UTILS,
     returnCode: 'current + uOccupancy * v * v',
     values: function (params) {
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, createTextureData(params.grid, params.orbitals[0])), { uOccupancy: 0 });
+        return tslib_1.__assign(tslib_1.__assign({}, createTextureData(params.grid, params.orbitals[0])), { uOccupancy: 0 });
     },
     cumulative: {
         states: function (params) {