molstar 3.3.1 → 3.4.0

package/lib/commonjs/cli/cifschema/index.js

@@ -7,10 +7,10 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var argparse = (0, tslib_1.__importStar)(require("argparse"));
-var fs = (0, tslib_1.__importStar)(require("fs"));
-var path = (0, tslib_1.__importStar)(require("path"));
-var node_fetch_1 = (0, tslib_1.__importDefault)(require("node-fetch"));
+var argparse = tslib_1.__importStar(require("argparse"));
+var fs = tslib_1.__importStar(require("fs"));
+var path = tslib_1.__importStar(require("path"));
+var node_fetch_1 = tslib_1.__importDefault(require("node-fetch"));
 var parser_1 = require("../../mol-io/reader/csv/parser");
 var parser_2 = require("../../mol-io/reader/cif/text/parser");
 var cif_dic_1 = require("./util/cif-dic");
@@ -24,9 +24,9 @@ function getDicNamespace(block) {
 }
 function runGenerateSchemaMmcif(name, fieldNamesPath, typescript, out, moldbImportPath, addAliases) {
     if (typescript === void 0) { typescript = false; }
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var mmcifDic, ihmDic, maDic, mmcifDicVersion, ihmDicVersion, maDicVersion, version, frames, schema;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, ensureMmcifDicAvailable()];
                 case 1:
@@ -56,7 +56,7 @@ function runGenerateSchemaMmcif(name, fieldNamesPath, typescript, out, moldbImpo
                     ihmDicVersion = getDicVersion(ihmDic.result.blocks[0]);
                     maDicVersion = getDicVersion(maDic.result.blocks[0]);
                     version = "Dictionary versions: mmCIF ".concat(mmcifDicVersion, ", IHM ").concat(ihmDicVersion, ", MA ").concat(maDicVersion, ".");
-                    frames = (0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)((0, tslib_1.__spreadArray)([], mmcifDic.result.blocks[0].saveFrames, true), ihmDic.result.blocks[0].saveFrames, true), maDic.result.blocks[0].saveFrames, true);
+                    frames = tslib_1.__spreadArray(tslib_1.__spreadArray(tslib_1.__spreadArray([], mmcifDic.result.blocks[0].saveFrames, true), ihmDic.result.blocks[0].saveFrames, true), maDic.result.blocks[0].saveFrames, true);
                     schema = (0, cif_dic_1.generateSchema)(frames);
                     return [4 /*yield*/, runGenerateSchema(name, version, schema, fieldNamesPath, typescript, out, moldbImportPath, addAliases)];
                 case 7:
@@ -68,9 +68,9 @@ function runGenerateSchemaMmcif(name, fieldNamesPath, typescript, out, moldbImpo
 }
 function runGenerateSchemaCifCore(name, fieldNamesPath, typescript, out, moldbImportPath, addAliases) {
     if (typescript === void 0) { typescript = false; }
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var cifCoreDic, cifCoreDicVersion, version, frames, imports, schema;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, ensureCifCoreDicAvailable()];
                 case 1:
@@ -82,7 +82,7 @@ function runGenerateSchemaCifCore(name, fieldNamesPath, typescript, out, moldbIm
                         throw cifCoreDic;
                     cifCoreDicVersion = getDicVersion(cifCoreDic.result.blocks[0]);
                     version = "Dictionary versions: CifCore ".concat(cifCoreDicVersion, ".");
-                    frames = (0, tslib_1.__spreadArray)([], cifCoreDic.result.blocks[0].saveFrames, true);
+                    frames = tslib_1.__spreadArray([], cifCoreDic.result.blocks[0].saveFrames, true);
                     return [4 /*yield*/, resolveImports(frames, DIC_DIR)];
                 case 3:
                     imports = _a.sent();
@@ -96,9 +96,9 @@ function runGenerateSchemaCifCore(name, fieldNamesPath, typescript, out, moldbIm
     });
 }
 function resolveImports(frames, baseDir) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var imports, _i, frames_1, d, importGet, _a, importGet_1, g, file, dic;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     imports = new Map();
@@ -124,7 +124,7 @@ function resolveImports(frames, baseDir) {
                     dic = _b.sent();
                     if (dic.isError)
                         throw dic;
-                    imports.set(file, (0, tslib_1.__spreadArray)([], dic.result.blocks[0].saveFrames, true));
+                    imports.set(file, tslib_1.__spreadArray([], dic.result.blocks[0].saveFrames, true));
                     _b.label = 4;
                 case 4:
                     _a++;
@@ -139,9 +139,9 @@ function resolveImports(frames, baseDir) {
 }
 function runGenerateSchemaDic(name, dicPath, fieldNamesPath, typescript, out, moldbImportPath, addAliases) {
     if (typescript === void 0) { typescript = false; }
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var dic, dicVersion, dicName, version, frames, imports, schema;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, parser_2.parseCifText)(fs.readFileSync(dicPath, 'utf8')).run()];
                 case 1:
@@ -151,7 +151,7 @@ function runGenerateSchemaDic(name, dicPath, fieldNamesPath, typescript, out, mo
                     dicVersion = getDicVersion(dic.result.blocks[0]);
                     dicName = getDicNamespace(dic.result.blocks[0]);
                     version = "Dictionary versions: ".concat(dicName, " ").concat(dicVersion, ".");
-                    frames = (0, tslib_1.__spreadArray)([], dic.result.blocks[0].saveFrames, true);
+                    frames = tslib_1.__spreadArray([], dic.result.blocks[0].saveFrames, true);
                     return [4 /*yield*/, resolveImports(frames, path.dirname(dicPath))];
                 case 2:
                     imports = _a.sent();
@@ -166,9 +166,9 @@ function runGenerateSchemaDic(name, dicPath, fieldNamesPath, typescript, out, mo
 }
 function runGenerateSchema(name, version, schema, fieldNamesPath, typescript, out, moldbImportPath, addAliases) {
     if (typescript === void 0) { typescript = false; }
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var filter, _a, output;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     if (!fieldNamesPath) return [3 /*break*/, 2];
@@ -194,9 +194,9 @@ function runGenerateSchema(name, version, schema, fieldNamesPath, typescript, ou
     });
 }
 function getFieldNamesFilter(fieldNamesPath) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var fieldNamesStr, parsed, csvFile, fieldNamesCol, fieldNames, filter;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     fieldNamesStr = fs.readFileSync(fieldNamesPath, 'utf8');
@@ -224,7 +224,7 @@ function getFieldNamesFilter(fieldNamesPath) {
     });
 }
 function ensureMmcifDicAvailable() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () { return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () { return tslib_1.__generator(this, function (_a) {
         switch (_a.label) {
             case 0: return [4 /*yield*/, ensureDicAvailable(MMCIF_DIC_PATH, MMCIF_DIC_URL)];
             case 1:
@@ -234,7 +234,7 @@ function ensureMmcifDicAvailable() {
     }); });
 }
 function ensureIhmDicAvailable() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () { return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () { return tslib_1.__generator(this, function (_a) {
         switch (_a.label) {
             case 0: return [4 /*yield*/, ensureDicAvailable(IHM_DIC_PATH, IHM_DIC_URL)];
             case 1:
@@ -244,7 +244,7 @@ function ensureIhmDicAvailable() {
     }); });
 }
 function ensureMaDicAvailable() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () { return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () { return tslib_1.__generator(this, function (_a) {
         switch (_a.label) {
             case 0: return [4 /*yield*/, ensureDicAvailable(MA_DIC_PATH, MA_DIC_URL)];
             case 1:
@@ -254,8 +254,8 @@ function ensureMaDicAvailable() {
     }); });
 }
 function ensureCifCoreDicAvailable() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, ensureDicAvailable(CIF_CORE_DIC_PATH, CIF_CORE_DIC_URL)];
                 case 1:
@@ -272,9 +272,9 @@ function ensureCifCoreDicAvailable() {
     });
 }
 function ensureDicAvailable(dicPath, dicUrl) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var name_1, data, _a, _b, _c;
-        return (0, tslib_1.__generator)(this, function (_d) {
+        return tslib_1.__generator(this, function (_d) {
             switch (_d.label) {
                 case 0:
                     if (!(FORCE_DIC_DOWNLOAD || !fs.existsSync(dicPath))) return [3 /*break*/, 3];

package/lib/commonjs/cli/cifschema/util/cif-dic.js

@@ -284,7 +284,7 @@ var EXTRA_ENUM_VALUES = {};
 function generateSchema(frames, imports) {
     if (imports === void 0) { imports = new Map(); }
     var tables = {};
-    var aliases = (0, tslib_1.__assign)({}, EXTRA_ALIASES);
+    var aliases = tslib_1.__assign({}, EXTRA_ALIASES);
     var categories = {};
     var links = {};
     var ctx = { categories: categories, links: links };

package/lib/commonjs/cli/lipid-params/index.js

@@ -7,18 +7,18 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var argparse = (0, tslib_1.__importStar)(require("argparse"));
-var fs = (0, tslib_1.__importStar)(require("fs"));
-var path = (0, tslib_1.__importStar)(require("path"));
-var node_fetch_1 = (0, tslib_1.__importDefault)(require("node-fetch"));
+var argparse = tslib_1.__importStar(require("argparse"));
+var fs = tslib_1.__importStar(require("fs"));
+var path = tslib_1.__importStar(require("path"));
+var node_fetch_1 = tslib_1.__importDefault(require("node-fetch"));
 var generic_1 = require("../../mol-data/generic");
 var LIPIDS_DIR = path.resolve(__dirname, '../../../../build/lipids/');
 var MARTINI_LIPIDS_PATH = path.resolve(LIPIDS_DIR, 'martini_lipids.itp');
 var MARTINI_LIPIDS_URL = 'http://www.cgmartini.nl/images/parameters/lipids/Collections/martini_v2.0_lipids_all_201506.itp';
 function ensureAvailable(path, url) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var name_1, data, _a, _b, _c;
-        return (0, tslib_1.__generator)(this, function (_d) {
+        return tslib_1.__generator(this, function (_d) {
             switch (_d.label) {
                 case 0:
                     if (!(FORCE_DOWNLOAD || !fs.existsSync(path))) return [3 /*break*/, 3];
@@ -43,7 +43,7 @@ function ensureAvailable(path, url) {
     });
 }
 function ensureLipidsAvailable() {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () { return (0, tslib_1.__generator)(this, function (_a) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () { return tslib_1.__generator(this, function (_a) {
         switch (_a.label) {
             case 0: return [4 /*yield*/, ensureAvailable(MARTINI_LIPIDS_PATH, MARTINI_LIPIDS_URL)];
             case 1:
@@ -54,9 +54,9 @@ function ensureLipidsAvailable() {
 }
 var extraLipids = ['DMPC'];
 function run(out) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var lipidsItpStr, lipids, reLipid, m, v, _i, extraLipids_1, v, lipidNames, output;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, ensureLipidsAvailable()];
                 case 1:

package/lib/commonjs/cli/state-docs/index.js

@@ -7,10 +7,10 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var _ = (0, tslib_1.__importStar)(require("../../mol-plugin-state/transforms"));
+var _ = tslib_1.__importStar(require("../../mol-plugin-state/transforms"));
 var mol_state_1 = require("../../mol-state");
 var mol_util_1 = require("../../mol-util");
-var fs = (0, tslib_1.__importStar)(require("fs"));
+var fs = tslib_1.__importStar(require("fs"));
 var pd_to_md_1 = require("./pd-to-md");
 var context_1 = require("../../mol-plugin/context");
 var param_definition_1 = require("../../mol-util/param-definition");

package/lib/commonjs/cli/structure-info/helpers.js

@@ -7,17 +7,17 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.downloadCif = exports.openCif = void 0;
 var tslib_1 = require("tslib");
-var util = (0, tslib_1.__importStar)(require("util"));
-var fs = (0, tslib_1.__importStar)(require("fs"));
-var node_fetch_1 = (0, tslib_1.__importDefault)(require("node-fetch"));
+var util = tslib_1.__importStar(require("util"));
+var fs = tslib_1.__importStar(require("fs"));
+var node_fetch_1 = tslib_1.__importDefault(require("node-fetch"));
 require('util.promisify').shim();
 var cif_1 = require("../../mol-io/reader/cif");
 var mol_task_1 = require("../../mol-task");
 var readFileAsync = util.promisify(fs.readFile);
 function readFile(path) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var input, data, i;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     if (!path.match(/\.bcif$/)) return [3 /*break*/, 2];
@@ -34,9 +34,9 @@ function readFile(path) {
     });
 }
 function parseCif(data) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var comp, parsed;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     comp = cif_1.CIF.parse(data);
@@ -51,9 +51,9 @@ function parseCif(data) {
     });
 }
 function openCif(path) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var data;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, readFile(path)];
                 case 1:
@@ -65,9 +65,9 @@ function openCif(path) {
 }
 exports.openCif = openCif;
 function downloadCif(url, isBinary) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var data, _a, _b, _c;
-        return (0, tslib_1.__generator)(this, function (_d) {
+        return tslib_1.__generator(this, function (_d) {
             switch (_d.label) {
                 case 0: return [4 /*yield*/, (0, node_fetch_1.default)(url)];
                 case 1:

package/lib/commonjs/cli/structure-info/model.js

@@ -9,7 +9,7 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.getModelsAndStructure = exports.printModelStats = exports.printSymmetryInfo = exports.printUnits = exports.printRings = exports.printSequence = exports.printBonds = exports.printSecStructure = exports.residueLabel = exports.atomLabel = exports.readCifFile = void 0;
 var tslib_1 = require("tslib");
-var argparse = (0, tslib_1.__importStar)(require("argparse"));
+var argparse = tslib_1.__importStar(require("argparse"));
 require('util.promisify').shim();
 var structure_1 = require("../../mol-model/structure");
 // import { Run, Progress } from '../../mol-task'
@@ -22,9 +22,9 @@ var secondary_structure_1 = require("../../mol-model-formats/structure/property/
 var symmetry_1 = require("../../mol-model-formats/structure/property/symmetry");
 var mol_task_1 = require("../../mol-task");
 function downloadFromPdb(pdb) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var parsed;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, helpers_1.downloadCif)("http://www.ebi.ac.uk/pdbe/static/entry/".concat(pdb, "_updated.cif"), false)];
                 case 1:
@@ -35,9 +35,9 @@ function downloadFromPdb(pdb) {
     });
 }
 function readCifFile(path) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var parsed;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, helpers_1.openCif)(path)];
                 case 1:
@@ -210,9 +210,9 @@ function printSymmetryInfo(model) {
 }
 exports.printSymmetryInfo = printSymmetryInfo;
 function printModelStats(models) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var i, m;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     console.log('\nModels\n=============');
@@ -242,9 +242,9 @@ function printModelStats(models) {
 }
 exports.printModelStats = printModelStats;
 function getModelsAndStructure(frame) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var models, structure;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, mmcif_1.trajectoryFromMmCIF)(frame).run()];
                 case 1:
@@ -257,9 +257,9 @@ function getModelsAndStructure(frame) {
 }
 exports.getModelsAndStructure = getModelsAndStructure;
 function run(frame, args) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _a, models, structure;
-        return (0, tslib_1.__generator)(this, function (_b) {
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0: return [4 /*yield*/, getModelsAndStructure(frame)];
                 case 1:
@@ -286,9 +286,9 @@ function run(frame, args) {
     });
 }
 function runDL(pdb, args) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var mmcif;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, downloadFromPdb(pdb)];
                 case 1:
@@ -300,9 +300,9 @@ function runDL(pdb, args) {
     });
 }
 function runFile(filename, args) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var mmcif;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, readCifFile(filename)];
                 case 1:

package/lib/commonjs/cli/structure-info/volume.js

@@ -7,9 +7,9 @@
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 var tslib_1 = require("tslib");
-var fs = (0, tslib_1.__importStar)(require("fs"));
-var argparse = (0, tslib_1.__importStar)(require("argparse"));
-var util = (0, tslib_1.__importStar)(require("util"));
+var fs = tslib_1.__importStar(require("fs"));
+var argparse = tslib_1.__importStar(require("argparse"));
+var util = tslib_1.__importStar(require("util"));
 var volume_1 = require("../../mol-model/volume");
 var helpers_1 = require("./helpers");
 var cif_1 = require("../../mol-io/reader/cif");
@@ -22,9 +22,9 @@ var density_server_1 = require("../../mol-model-formats/volume/density-server");
 require('util.promisify').shim();
 var writeFileAsync = util.promisify(fs.writeFile);
 function getVolume(url) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var cif, data;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, helpers_1.downloadCif)(url, true)];
                 case 1:
@@ -46,9 +46,9 @@ function print(volume) {
     console.log(volume.grid.stats);
 }
 function doMesh(volume, filename) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var mesh, vertexCount, triangleCount, vs, ts, obj, i, i;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, mol_task_1.Task.create('', function (runtime) { return (0, isosurface_1.createVolumeIsosurfaceMesh)({ runtime: runtime }, volume, theme_1.Theme.createEmpty(), { isoValue: volume_1.Volume.IsoValue.absolute(1.5) }); }).run()];
                 case 1:
@@ -83,9 +83,9 @@ function doMesh(volume, filename) {
     });
 }
 function run(url, meshFilename) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var volume;
-        return (0, tslib_1.__generator)(this, function (_a) {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, getVolume(url)];
                 case 1:

package/lib/commonjs/examples/alpha-orbitals/controls.js

@@ -8,17 +8,17 @@ var jsx_runtime_1 = require("react/jsx-runtime");
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */
-var ReactDOM = (0, tslib_1.__importStar)(require("react-dom"));
+var ReactDOM = tslib_1.__importStar(require("react-dom"));
 var parameters_1 = require("../../mol-plugin-ui/controls/parameters");
 var use_behavior_1 = require("../../mol-plugin-ui/hooks/use-behavior");
 var plugin_1 = require("../../mol-plugin-ui/plugin");
 function mountControls(orbitals, parent) {
-    ReactDOM.render((0, jsx_runtime_1.jsx)(plugin_1.PluginContextContainer, (0, tslib_1.__assign)({ plugin: orbitals.plugin }, { children: (0, jsx_runtime_1.jsx)(Controls, { orbitals: orbitals }, void 0) }), void 0), parent);
+    ReactDOM.render((0, jsx_runtime_1.jsx)(plugin_1.PluginContextContainer, tslib_1.__assign({ plugin: orbitals.plugin }, { children: (0, jsx_runtime_1.jsx)(Controls, { orbitals: orbitals }) })), parent);
 }
 exports.mountControls = mountControls;
 function Controls(_a) {
     var orbitals = _a.orbitals;
     var params = (0, use_behavior_1.useBehavior)(orbitals.params);
     var values = (0, use_behavior_1.useBehavior)(orbitals.state);
-    return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: params, values: values, onChangeValues: function (vs) { return orbitals.state.next(vs); } }, void 0);
+    return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: params, values: values, onChangeValues: function (vs) { return orbitals.state.next(vs); } });
 }

package/lib/commonjs/examples/alpha-orbitals/index.js

@@ -27,18 +27,18 @@ var AlphaOrbitalsExample = /** @class */ (function () {
         this.state = new rxjs_1.BehaviorSubject({ show: { name: 'orbital', params: { index: 32 } }, isoValue: 1, gpuSurface: true });
         this.selectors = void 0;
         this.basis = void 0;
-        this.currentParams = (0, tslib_1.__assign)({}, this.state.value);
+        this.currentParams = tslib_1.__assign({}, this.state.value);
     }
     AlphaOrbitalsExample.prototype.init = function (target) {
         var _a;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var defaultSpec, _b;
-            return (0, tslib_1.__generator)(this, function (_c) {
+            return tslib_1.__generator(this, function (_c) {
                 switch (_c.label) {
                     case 0:
                         defaultSpec = (0, spec_1.DefaultPluginUISpec)();
                         _b = this;
-                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, defaultSpec), { layout: {
+                        return [4 /*yield*/, (0, mol_plugin_ui_1.createPluginUI)(typeof target === 'string' ? document.getElementById(target) : target, tslib_1.__assign(tslib_1.__assign({}, defaultSpec), { layout: {
                                     initial: {
                                         isExpanded: false,
                                         showControls: false
@@ -65,7 +65,7 @@ var AlphaOrbitalsExample = /** @class */ (function () {
                             });
                             return [2 /*return*/];
                         }
-                        this.load((0, tslib_1.__assign)({ moleculeSdf: example_data_1.DemoMoleculeSDF }, example_data_1.DemoOrbitals));
+                        this.load(tslib_1.__assign({ moleculeSdf: example_data_1.DemoMoleculeSDF }, example_data_1.DemoOrbitals));
                         (0, controls_1.mountControls)(this, document.getElementById('controls'));
                         return [2 /*return*/];
                 }
@@ -81,9 +81,9 @@ var AlphaOrbitalsExample = /** @class */ (function () {
     };
     AlphaOrbitalsExample.prototype.syncVolume = function () {
         var _a, _b;
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var state, update, volume, positive, negative, index_1, volume, positive;
-            return (0, tslib_1.__generator)(this, function (_c) {
+            return tslib_1.__generator(this, function (_c) {
                 switch (_c.label) {
                     case 0:
                         if (!((_a = this.basis) === null || _a === void 0 ? void 0 : _a.isOk))
@@ -158,10 +158,10 @@ var AlphaOrbitalsExample = /** @class */ (function () {
         };
     };
     AlphaOrbitalsExample.prototype.load = function (input) {
-        return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+        return tslib_1.__awaiter(this, void 0, void 0, function () {
             var data, trajectory, model, structure, all, _a;
             var _this = this;
-            return (0, tslib_1.__generator)(this, function (_b) {
+            return tslib_1.__generator(this, function (_b) {
                 switch (_b.label) {
                     case 0: return [4 /*yield*/, this.plugin.clear()];
                     case 1:
@@ -206,8 +206,8 @@ var AlphaOrbitalsExample = /** @class */ (function () {
                             isoValue: param_definition_1.ParamDefinition.Numeric(this.currentParams.isoValue, { min: 0.5, max: 3, step: 0.1 }, { immediateUpdate: true, isEssential: false }),
                             gpuSurface: param_definition_1.ParamDefinition.Boolean(this.currentParams.gpuSurface, { isHidden: true })
                         });
-                        this.state.pipe((0, operators_1.skip)(1), (0, operators_1.debounceTime)(1000 / 24)).subscribe(function (params) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-                            return (0, tslib_1.__generator)(this, function (_a) {
+                        this.state.pipe((0, operators_1.skip)(1), (0, operators_1.debounceTime)(1000 / 24)).subscribe(function (params) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+                            return tslib_1.__generator(this, function (_a) {
                                 if (params.show.name !== this.currentParams.show.name
                                     || (params.show.name === 'orbital' && this.currentParams.show.name === 'orbital' && params.show.params.index !== this.currentParams.show.params.index)) {
                                     this.syncVolume();

package/lib/commonjs/examples/basic-wrapper/controls.js

@@ -10,12 +10,12 @@ var jsx_runtime_1 = require("react/jsx-runtime");
  */
 var base_1 = require("../../mol-plugin-ui/base");
 var CustomToastMessage = /** @class */ (function (_super) {
-    (0, tslib_1.__extends)(CustomToastMessage, _super);
+    tslib_1.__extends(CustomToastMessage, _super);
     function CustomToastMessage() {
         return _super !== null && _super.apply(this, arguments) || this;
     }
     CustomToastMessage.prototype.render = function () {
-        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: ["Custom ", (0, jsx_runtime_1.jsx)("i", { children: "Toast" }, void 0), " content. No timeout."] }, void 0);
+        return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: ["Custom ", (0, jsx_runtime_1.jsx)("i", { children: "Toast" }), " content. No timeout."] });
     };
     return CustomToastMessage;
 }(base_1.PluginUIComponent));