molstar 3.3.1 → 3.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (777) hide show
  1. package/README.md +3 -0
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/docking-viewer/viewport.js +1 -1
  4. package/lib/apps/viewer/app.d.ts +7 -6
  5. package/lib/apps/viewer/app.js +2 -0
  6. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  7. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  8. package/lib/commonjs/apps/docking-viewer/index.js +12 -12
  9. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  10. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  11. package/lib/commonjs/apps/viewer/app.js +24 -22
  12. package/lib/commonjs/apps/viewer/index.js +1 -1
  13. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  14. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  15. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  16. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  17. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  18. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  19. package/lib/commonjs/cli/cif2bcif/index.js +8 -8
  20. package/lib/commonjs/cli/cifschema/index.js +27 -27
  21. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -1
  22. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  23. package/lib/commonjs/cli/state-docs/index.js +2 -2
  24. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  25. package/lib/commonjs/cli/structure-info/model.js +15 -15
  26. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  27. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  28. package/lib/commonjs/examples/alpha-orbitals/index.js +11 -11
  29. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  30. package/lib/commonjs/examples/basic-wrapper/index.js +22 -22
  31. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  32. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  33. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  34. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  35. package/lib/commonjs/examples/lighting/index.js +6 -6
  36. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  37. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  38. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -26
  39. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  40. package/lib/commonjs/examples/task.js +15 -15
  41. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  42. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  43. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  44. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  45. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  46. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  47. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  48. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  49. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  50. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  51. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  52. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  53. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  54. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  55. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  56. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  57. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  58. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  59. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +5 -5
  60. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  61. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +1 -1
  62. package/lib/commonjs/extensions/g3d/data.js +6 -6
  63. package/lib/commonjs/extensions/g3d/format.js +14 -14
  64. package/lib/commonjs/extensions/g3d/model.js +4 -4
  65. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  66. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  67. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  68. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  69. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  70. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  71. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  72. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  73. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  74. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  75. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  76. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  77. package/lib/commonjs/extensions/model-export/export.js +4 -4
  78. package/lib/commonjs/extensions/model-export/index.js +1 -1
  79. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  80. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  81. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  82. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  83. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  84. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  85. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  86. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  87. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  88. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  89. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  90. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  91. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  92. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  93. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  94. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  95. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +3 -3
  96. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  97. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  98. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  99. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  100. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  101. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  102. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  103. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  104. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  105. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  106. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  107. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  108. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  109. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  110. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  111. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  112. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  113. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  114. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  115. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  116. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  117. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  118. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  119. package/lib/commonjs/mol-data/db/column.js +2 -2
  120. package/lib/commonjs/mol-data/db/table.js +1 -1
  121. package/lib/commonjs/mol-data/db.js +1 -1
  122. package/lib/commonjs/mol-data/generic.js +3 -3
  123. package/lib/commonjs/mol-data/index.js +4 -4
  124. package/lib/commonjs/mol-data/int/interval.js +1 -1
  125. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  126. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  127. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  128. package/lib/commonjs/mol-data/util.js +7 -7
  129. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -3
  130. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  131. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  132. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  133. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  134. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -3
  135. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  136. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  137. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -3
  138. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  139. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  140. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  141. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +4 -4
  142. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -3
  143. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  144. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  145. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  146. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  147. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  148. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  149. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  150. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  151. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  152. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  153. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  154. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  155. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  156. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  157. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  158. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  159. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  160. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  161. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  162. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  163. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  164. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  165. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  166. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  167. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  168. package/lib/commonjs/mol-gl/webgl/buffer.js +4 -5
  169. package/lib/commonjs/mol-gl/webgl/context.js +3 -3
  170. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  171. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  172. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  173. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  174. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  175. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  176. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  177. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  178. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  179. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  180. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  181. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  182. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  183. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  184. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  185. package/lib/commonjs/mol-io/reader/cif/schema.js +2 -2
  186. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  187. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  188. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  189. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  190. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  191. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  192. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  193. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  194. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  195. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  196. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  197. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  198. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  199. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  200. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  201. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  202. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  203. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  204. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  205. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  206. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  207. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  208. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  209. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  210. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  211. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  212. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  213. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  214. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  215. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  216. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  217. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  218. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  219. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +4 -4
  220. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
  221. package/lib/commonjs/mol-math/geometry/gaussian-density.js +4 -4
  222. package/lib/commonjs/mol-math/geometry/molecular-surface.js +8 -8
  223. package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +1 -1
  224. package/lib/commonjs/mol-math/geometry.js +8 -8
  225. package/lib/commonjs/mol-math/graph/inter-unit-graph.js +1 -1
  226. package/lib/commonjs/mol-math/graph.js +1 -1
  227. package/lib/commonjs/mol-math/linear-algebra.js +2 -2
  228. package/lib/commonjs/mol-model/sequence/alignment/alignment.js +1 -1
  229. package/lib/commonjs/mol-model/sequence/sequence.js +2 -1
  230. package/lib/commonjs/mol-model/sequence.js +1 -1
  231. package/lib/commonjs/mol-model/shape.js +1 -1
  232. package/lib/commonjs/mol-model/structure/coordinates.js +1 -1
  233. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  234. package/lib/commonjs/mol-model/structure/model/model.js +3 -3
  235. package/lib/commonjs/mol-model/structure/model/properties/atomic.js +3 -3
  236. package/lib/commonjs/mol-model/structure/model/properties/coarse.js +2 -2
  237. package/lib/commonjs/mol-model/structure/model/types/saccharides.d.ts +8 -0
  238. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +11 -0
  239. package/lib/commonjs/mol-model/structure/model.js +3 -3
  240. package/lib/commonjs/mol-model/structure/query/queries/generators.js +2 -2
  241. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +2 -2
  242. package/lib/commonjs/mol-model/structure/query.js +6 -6
  243. package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
  244. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +1 -1
  245. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +6 -9
  246. package/lib/commonjs/mol-model/structure/structure/element/element.js +5 -5
  247. package/lib/commonjs/mol-model/structure/structure/element.js +1 -1
  248. package/lib/commonjs/mol-model/structure/structure/structure.js +5 -5
  249. package/lib/commonjs/mol-model/structure/structure/symmetry.js +10 -10
  250. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +2 -2
  251. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +3 -3
  252. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  253. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +3 -3
  254. package/lib/commonjs/mol-model/structure/structure/unit.js +4 -4
  255. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +1 -1
  256. package/lib/commonjs/mol-model/structure/structure.js +2 -2
  257. package/lib/commonjs/mol-model/structure/topology.js +1 -1
  258. package/lib/commonjs/mol-model/structure.js +6 -6
  259. package/lib/commonjs/mol-model/volume.js +2 -2
  260. package/lib/commonjs/mol-model-formats/shape/ply.js +7 -7
  261. package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +1 -1
  262. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -15
  263. package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +3 -3
  264. package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
  265. package/lib/commonjs/mol-model-formats/structure/basic/parser.d.ts +1 -1
  266. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +10 -10
  267. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
  268. package/lib/commonjs/mol-model-formats/structure/basic/schema.js +7 -2
  269. package/lib/commonjs/mol-model-formats/structure/basic/sort.js +2 -2
  270. package/lib/commonjs/mol-model-formats/structure/basic/util.d.ts +33 -2
  271. package/lib/commonjs/mol-model-formats/structure/basic/util.js +26 -2
  272. package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
  273. package/lib/commonjs/mol-model-formats/structure/common/component.js +5 -1
  274. package/lib/commonjs/mol-model-formats/structure/cube.js +5 -5
  275. package/lib/commonjs/mol-model-formats/structure/dcd.js +2 -2
  276. package/lib/commonjs/mol-model-formats/structure/gro.js +5 -3
  277. package/lib/commonjs/mol-model-formats/structure/mmcif.d.ts +1 -1
  278. package/lib/commonjs/mol-model-formats/structure/mmcif.js +4 -2
  279. package/lib/commonjs/mol-model-formats/structure/mol.js +5 -5
  280. package/lib/commonjs/mol-model-formats/structure/mol2.js +6 -6
  281. package/lib/commonjs/mol-model-formats/structure/nctraj.d.ts +9 -0
  282. package/lib/commonjs/mol-model-formats/structure/nctraj.js +60 -0
  283. package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.js +2 -2
  284. package/lib/commonjs/mol-model-formats/structure/pdb.d.ts +1 -1
  285. package/lib/commonjs/mol-model-formats/structure/pdb.js +7 -5
  286. package/lib/commonjs/mol-model-formats/structure/prmtop.d.ts +16 -0
  287. package/lib/commonjs/mol-model-formats/structure/prmtop.js +147 -0
  288. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
  289. package/lib/commonjs/mol-model-formats/structure/property/symmetry.js +11 -1
  290. package/lib/commonjs/mol-model-formats/structure/psf.js +5 -3
  291. package/lib/commonjs/mol-model-formats/structure/top.d.ts +16 -0
  292. package/lib/commonjs/mol-model-formats/structure/top.js +189 -0
  293. package/lib/commonjs/mol-model-formats/structure/trr.d.ts +9 -0
  294. package/lib/commonjs/mol-model-formats/structure/trr.js +46 -0
  295. package/lib/commonjs/mol-model-formats/structure/util.d.ts +2 -2
  296. package/lib/commonjs/mol-model-formats/structure/util.js +19 -20
  297. package/lib/commonjs/mol-model-formats/structure/xtc.js +2 -2
  298. package/lib/commonjs/mol-model-formats/structure/xyz.js +2 -2
  299. package/lib/commonjs/mol-model-formats/volume/ccp4.js +2 -2
  300. package/lib/commonjs/mol-model-formats/volume/cube.js +2 -2
  301. package/lib/commonjs/mol-model-formats/volume/density-server.js +2 -2
  302. package/lib/commonjs/mol-model-formats/volume/dsn6.js +2 -2
  303. package/lib/commonjs/mol-model-formats/volume/dx.js +2 -2
  304. package/lib/commonjs/mol-model-props/common/custom-element-property.js +2 -2
  305. package/lib/commonjs/mol-model-props/common/custom-model-property.js +5 -5
  306. package/lib/commonjs/mol-model-props/common/custom-property.js +1 -1
  307. package/lib/commonjs/mol-model-props/common/custom-structure-property.js +6 -6
  308. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/area.js +2 -2
  309. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +5 -5
  310. package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +4 -4
  311. package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +3 -3
  312. package/lib/commonjs/mol-model-props/computed/helix-orientation.js +2 -2
  313. package/lib/commonjs/mol-model-props/computed/interactions/common.js +1 -1
  314. package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
  315. package/lib/commonjs/mol-model-props/computed/interactions/features.js +1 -1
  316. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +3 -3
  317. package/lib/commonjs/mol-model-props/computed/interactions/interactions.js +3 -3
  318. package/lib/commonjs/mol-model-props/computed/interactions.js +4 -4
  319. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +1 -1
  320. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +3 -3
  321. package/lib/commonjs/mol-model-props/computed/representations/interactions.js +1 -1
  322. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +2 -2
  323. package/lib/commonjs/mol-model-props/computed/secondary-structure.js +7 -7
  324. package/lib/commonjs/mol-model-props/computed/valence-model.js +4 -4
  325. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/property.js +2 -2
  326. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.js +2 -2
  327. package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +2 -2
  328. package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +3 -3
  329. package/lib/commonjs/mol-plugin/animation-loop.js +2 -2
  330. package/lib/commonjs/mol-plugin/behavior/behavior.js +5 -5
  331. package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +2 -2
  332. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js +1 -1
  333. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js +1 -1
  334. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.js +1 -1
  335. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js +1 -1
  336. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.js +1 -1
  337. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/sifts-mapping.js +1 -1
  338. package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/structure-info.js +2 -2
  339. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +3 -3
  340. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +11 -11
  341. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js +12 -12
  342. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.js +1 -1
  343. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js +16 -16
  344. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +10 -10
  345. package/lib/commonjs/mol-plugin/behavior/static/state.js +6 -6
  346. package/lib/commonjs/mol-plugin/behavior.js +8 -8
  347. package/lib/commonjs/mol-plugin/command.js +2 -2
  348. package/lib/commonjs/mol-plugin/context.d.ts +2 -1
  349. package/lib/commonjs/mol-plugin/context.js +9 -8
  350. package/lib/commonjs/mol-plugin/layout.js +2 -2
  351. package/lib/commonjs/mol-plugin/spec.js +1 -1
  352. package/lib/commonjs/mol-plugin/state.js +5 -5
  353. package/lib/commonjs/mol-plugin/util/task-manager.js +4 -4
  354. package/lib/commonjs/mol-plugin/util/toast.js +1 -1
  355. package/lib/commonjs/mol-plugin/util/viewport-screenshot.js +17 -17
  356. package/lib/commonjs/mol-plugin-state/actions/file.d.ts +1 -1
  357. package/lib/commonjs/mol-plugin-state/actions/file.js +94 -61
  358. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +11 -2
  359. package/lib/commonjs/mol-plugin-state/actions/structure.js +190 -20
  360. package/lib/commonjs/mol-plugin-state/actions/volume.js +5 -4
  361. package/lib/commonjs/mol-plugin-state/actions.js +3 -3
  362. package/lib/commonjs/mol-plugin-state/animation/built-in/assembly-unwind.js +2 -2
  363. package/lib/commonjs/mol-plugin-state/animation/built-in/camera-rock.js +3 -3
  364. package/lib/commonjs/mol-plugin-state/animation/built-in/camera-spin.js +3 -3
  365. package/lib/commonjs/mol-plugin-state/animation/built-in/explode-units.js +4 -4
  366. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +2 -2
  367. package/lib/commonjs/mol-plugin-state/animation/built-in/spin-structure.js +5 -5
  368. package/lib/commonjs/mol-plugin-state/animation/built-in/state-interpolation.js +2 -2
  369. package/lib/commonjs/mol-plugin-state/animation/built-in/state-snapshots.js +5 -5
  370. package/lib/commonjs/mol-plugin-state/builder/data.js +2 -2
  371. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +16 -16
  372. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +28 -28
  373. package/lib/commonjs/mol-plugin-state/builder/structure/representation.js +2 -2
  374. package/lib/commonjs/mol-plugin-state/builder/structure.js +7 -7
  375. package/lib/commonjs/mol-plugin-state/component.js +1 -1
  376. package/lib/commonjs/mol-plugin-state/formats/{structure.d.ts → coordinates.d.ts} +34 -18
  377. package/lib/commonjs/mol-plugin-state/formats/coordinates.js +70 -0
  378. package/lib/commonjs/mol-plugin-state/formats/registry.d.ts +3 -3
  379. package/lib/commonjs/mol-plugin-state/formats/registry.js +13 -8
  380. package/lib/commonjs/mol-plugin-state/formats/shape.js +2 -2
  381. package/lib/commonjs/mol-plugin-state/formats/topology.d.ts +73 -0
  382. package/lib/commonjs/mol-plugin-state/formats/topology.js +87 -0
  383. package/lib/commonjs/mol-plugin-state/formats/trajectory.js +6 -6
  384. package/lib/commonjs/mol-plugin-state/formats/volume.js +21 -21
  385. package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +14 -14
  386. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +7 -7
  387. package/lib/commonjs/mol-plugin-state/helpers/structure-component.js +2 -1
  388. package/lib/commonjs/mol-plugin-state/helpers/structure-overpaint.js +11 -11
  389. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +3 -3
  390. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +11 -11
  391. package/lib/commonjs/mol-plugin-state/helpers/structure-transparency.js +11 -11
  392. package/lib/commonjs/mol-plugin-state/manager/animation.js +17 -17
  393. package/lib/commonjs/mol-plugin-state/manager/camera.js +1 -1
  394. package/lib/commonjs/mol-plugin-state/manager/interactivity.js +6 -6
  395. package/lib/commonjs/mol-plugin-state/manager/snapshots.js +14 -14
  396. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +26 -26
  397. package/lib/commonjs/mol-plugin-state/manager/structure/focus.js +2 -2
  398. package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy-state.js +1 -1
  399. package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy.js +8 -8
  400. package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +21 -21
  401. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -3
  402. package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.js +1 -1
  403. package/lib/commonjs/mol-plugin-state/objects.d.ts +47 -1
  404. package/lib/commonjs/mol-plugin-state/objects.js +46 -30
  405. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +6 -0
  406. package/lib/commonjs/mol-plugin-state/transforms/data.js +93 -41
  407. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +14 -2
  408. package/lib/commonjs/mol-plugin-state/transforms/model.js +163 -54
  409. package/lib/commonjs/mol-plugin-state/transforms/representation.js +77 -77
  410. package/lib/commonjs/mol-plugin-state/transforms/shape.js +2 -2
  411. package/lib/commonjs/mol-plugin-state/transforms/volume.js +16 -16
  412. package/lib/commonjs/mol-plugin-state/transforms.js +6 -6
  413. package/lib/commonjs/mol-plugin-ui/base.js +5 -5
  414. package/lib/commonjs/mol-plugin-ui/context.js +1 -1
  415. package/lib/commonjs/mol-plugin-ui/controls/action-menu.js +14 -14
  416. package/lib/commonjs/mol-plugin-ui/controls/color.js +7 -7
  417. package/lib/commonjs/mol-plugin-ui/controls/common.js +16 -16
  418. package/lib/commonjs/mol-plugin-ui/controls/icons.js +70 -70
  419. package/lib/commonjs/mol-plugin-ui/controls/legend.js +7 -7
  420. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +3 -3
  421. package/lib/commonjs/mol-plugin-ui/controls/line-graph/point-component.js +2 -2
  422. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +94 -94
  423. package/lib/commonjs/mol-plugin-ui/controls/screenshot.js +5 -5
  424. package/lib/commonjs/mol-plugin-ui/controls/slider.js +16 -16
  425. package/lib/commonjs/mol-plugin-ui/controls.js +16 -16
  426. package/lib/commonjs/mol-plugin-ui/custom/volume.js +16 -16
  427. package/lib/commonjs/mol-plugin-ui/index.js +4 -4
  428. package/lib/commonjs/mol-plugin-ui/left-panel.d.ts +8 -1
  429. package/lib/commonjs/mol-plugin-ui/left-panel.js +40 -19
  430. package/lib/commonjs/mol-plugin-ui/plugin.js +17 -17
  431. package/lib/commonjs/mol-plugin-ui/sequence/chain.js +1 -1
  432. package/lib/commonjs/mol-plugin-ui/sequence/element.js +1 -1
  433. package/lib/commonjs/mol-plugin-ui/sequence/hetero.js +1 -1
  434. package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
  435. package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +6 -6
  436. package/lib/commonjs/mol-plugin-ui/sequence.js +9 -9
  437. package/lib/commonjs/mol-plugin-ui/spec.js +1 -1
  438. package/lib/commonjs/mol-plugin-ui/state/actions.js +2 -2
  439. package/lib/commonjs/mol-plugin-ui/state/animation.js +2 -2
  440. package/lib/commonjs/mol-plugin-ui/state/apply-action.js +1 -1
  441. package/lib/commonjs/mol-plugin-ui/state/common.js +12 -12
  442. package/lib/commonjs/mol-plugin-ui/state/snapshots.js +29 -29
  443. package/lib/commonjs/mol-plugin-ui/state/tree.js +19 -19
  444. package/lib/commonjs/mol-plugin-ui/state/update-transform.js +3 -3
  445. package/lib/commonjs/mol-plugin-ui/structure/components.js +19 -19
  446. package/lib/commonjs/mol-plugin-ui/structure/focus.js +4 -4
  447. package/lib/commonjs/mol-plugin-ui/structure/generic.js +6 -6
  448. package/lib/commonjs/mol-plugin-ui/structure/measurements.js +13 -13
  449. package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +11 -11
  450. package/lib/commonjs/mol-plugin-ui/structure/selection.js +13 -13
  451. package/lib/commonjs/mol-plugin-ui/structure/source.js +12 -12
  452. package/lib/commonjs/mol-plugin-ui/structure/superposition.js +20 -20
  453. package/lib/commonjs/mol-plugin-ui/structure/volume.js +12 -12
  454. package/lib/commonjs/mol-plugin-ui/task.js +8 -8
  455. package/lib/commonjs/mol-plugin-ui/toast.js +6 -6
  456. package/lib/commonjs/mol-plugin-ui/viewport/canvas.js +5 -5
  457. package/lib/commonjs/mol-plugin-ui/viewport/help.js +14 -14
  458. package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +8 -8
  459. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +6 -6
  460. package/lib/commonjs/mol-plugin-ui/viewport.js +7 -7
  461. package/lib/commonjs/mol-repr/representation.js +4 -4
  462. package/lib/commonjs/mol-repr/shape/loci/angle.js +9 -9
  463. package/lib/commonjs/mol-repr/shape/loci/common.js +1 -1
  464. package/lib/commonjs/mol-repr/shape/loci/dihedral.js +14 -14
  465. package/lib/commonjs/mol-repr/shape/loci/distance.js +5 -5
  466. package/lib/commonjs/mol-repr/shape/loci/label.js +3 -3
  467. package/lib/commonjs/mol-repr/shape/loci/orientation.js +4 -4
  468. package/lib/commonjs/mol-repr/shape/loci/plane.js +2 -2
  469. package/lib/commonjs/mol-repr/shape/model/unitcell.js +2 -2
  470. package/lib/commonjs/mol-repr/shape/representation.js +2 -2
  471. package/lib/commonjs/mol-repr/structure/complex-representation.js +2 -2
  472. package/lib/commonjs/mol-repr/structure/complex-visual.js +12 -12
  473. package/lib/commonjs/mol-repr/structure/params.js +8 -8
  474. package/lib/commonjs/mol-repr/structure/registry.js +1 -1
  475. package/lib/commonjs/mol-repr/structure/representation/backbone.js +1 -1
  476. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +1 -1
  477. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +1 -1
  478. package/lib/commonjs/mol-repr/structure/representation/cartoon.js +3 -3
  479. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +1 -1
  480. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
  481. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +1 -1
  482. package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
  483. package/lib/commonjs/mol-repr/structure/representation/line.js +1 -1
  484. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
  485. package/lib/commonjs/mol-repr/structure/representation/orientation.js +1 -1
  486. package/lib/commonjs/mol-repr/structure/representation/point.js +1 -1
  487. package/lib/commonjs/mol-repr/structure/representation/putty.js +1 -1
  488. package/lib/commonjs/mol-repr/structure/representation/spacefill.js +1 -1
  489. package/lib/commonjs/mol-repr/structure/representation.js +1 -1
  490. package/lib/commonjs/mol-repr/structure/units-representation.js +2 -2
  491. package/lib/commonjs/mol-repr/structure/units-visual.js +16 -16
  492. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +1 -1
  493. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +1 -1
  494. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +1 -1
  495. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +1 -1
  496. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.js +1 -1
  497. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +1 -1
  498. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
  499. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +1 -1
  500. package/lib/commonjs/mol-repr/structure/visual/element-point.js +1 -1
  501. package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +1 -1
  502. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.js +1 -1
  503. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +6 -6
  504. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -11
  505. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -3
  506. package/lib/commonjs/mol-repr/structure/visual/label-text.js +1 -1
  507. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +3 -3
  508. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +3 -3
  509. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.js +1 -1
  510. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.js +1 -1
  511. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +1 -1
  512. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.js +1 -1
  513. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.js +1 -1
  514. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
  515. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.js +1 -1
  516. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  517. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js +1 -1
  518. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
  519. package/lib/commonjs/mol-repr/structure/visual/util/common.js +1 -1
  520. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js +13 -13
  521. package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js +5 -5
  522. package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +4 -4
  523. package/lib/commonjs/mol-repr/util.js +1 -1
  524. package/lib/commonjs/mol-repr/volume/direct-volume.js +3 -3
  525. package/lib/commonjs/mol-repr/volume/isosurface.js +9 -9
  526. package/lib/commonjs/mol-repr/volume/registry.js +1 -1
  527. package/lib/commonjs/mol-repr/volume/representation.js +5 -5
  528. package/lib/commonjs/mol-repr/volume/slice.js +4 -4
  529. package/lib/commonjs/mol-script/language/parser.js +7 -4
  530. package/lib/commonjs/mol-script/language/symbol-table/internal.js +1 -1
  531. package/lib/commonjs/mol-script/language/symbol-table/structure-query.js +1 -1
  532. package/lib/commonjs/mol-script/runtime/query/compiler.js +1 -1
  533. package/lib/commonjs/mol-script/script/mol-script/symbols.js +1 -1
  534. package/lib/commonjs/mol-state/action.js +1 -1
  535. package/lib/commonjs/mol-state/index.js +8 -8
  536. package/lib/commonjs/mol-state/state/builder.js +2 -2
  537. package/lib/commonjs/mol-state/state/selection.js +1 -1
  538. package/lib/commonjs/mol-state/state.js +21 -21
  539. package/lib/commonjs/mol-state/transform.js +4 -4
  540. package/lib/commonjs/mol-state/transformer.js +1 -1
  541. package/lib/commonjs/mol-task/execution/observable.js +5 -5
  542. package/lib/commonjs/mol-task/task.js +3 -3
  543. package/lib/commonjs/mol-task/util/chunked.js +2 -2
  544. package/lib/commonjs/mol-task/util/multistep.js +1 -1
  545. package/lib/commonjs/mol-task/util/scheduler.d.ts +2 -2
  546. package/lib/commonjs/mol-task/util/scheduler.js +8 -8
  547. package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
  548. package/lib/commonjs/mol-theme/color/chain-id.js +1 -1
  549. package/lib/commonjs/mol-theme/color/element-index.js +1 -1
  550. package/lib/commonjs/mol-theme/color/entity-id.js +1 -1
  551. package/lib/commonjs/mol-theme/color/entity-source.js +2 -2
  552. package/lib/commonjs/mol-theme/color/hydrophobicity.js +2 -2
  553. package/lib/commonjs/mol-theme/color/model-index.js +1 -1
  554. package/lib/commonjs/mol-theme/color/operator-hkl.js +2 -2
  555. package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
  556. package/lib/commonjs/mol-theme/color/polymer-id.js +2 -2
  557. package/lib/commonjs/mol-theme/color/polymer-index.js +2 -2
  558. package/lib/commonjs/mol-theme/color/unit-index.js +2 -2
  559. package/lib/commonjs/mol-theme/label.js +6 -6
  560. package/lib/commonjs/mol-theme/theme.js +3 -3
  561. package/lib/commonjs/mol-util/assets.js +7 -7
  562. package/lib/commonjs/mol-util/color/distinct.js +1 -1
  563. package/lib/commonjs/mol-util/color/palette.js +3 -3
  564. package/lib/commonjs/mol-util/color/scale.js +2 -2
  565. package/lib/commonjs/mol-util/data-source.js +14 -13
  566. package/lib/commonjs/mol-util/file-info.d.ts +1 -3
  567. package/lib/commonjs/mol-util/file-info.js +2 -10
  568. package/lib/commonjs/mol-util/graphql-client.js +4 -4
  569. package/lib/commonjs/mol-util/index.d.ts +1 -0
  570. package/lib/commonjs/mol-util/index.js +8 -2
  571. package/lib/commonjs/mol-util/input/input-observer.js +6 -6
  572. package/lib/commonjs/mol-util/make-dir.js +1 -1
  573. package/lib/commonjs/mol-util/material.js +2 -2
  574. package/lib/commonjs/mol-util/monadic-parser.js +2 -2
  575. package/lib/commonjs/mol-util/param-definition.js +7 -7
  576. package/lib/commonjs/mol-util/read.js +2 -2
  577. package/lib/commonjs/mol-util/retry-if.js +2 -2
  578. package/lib/commonjs/mol-util/string.js +1 -1
  579. package/lib/commonjs/mol-util/zip/deflate.js +4 -3
  580. package/lib/commonjs/mol-util/zip/inflate.js +2 -2
  581. package/lib/commonjs/mol-util/zip/zip.d.ts +7 -1
  582. package/lib/commonjs/mol-util/zip/zip.js +21 -16
  583. package/lib/commonjs/servers/common/file-handle.js +1 -1
  584. package/lib/commonjs/servers/common/swagger-ui/index.js +1 -1
  585. package/lib/commonjs/servers/model/config.d.ts +2 -2
  586. package/lib/commonjs/servers/model/config.js +5 -5
  587. package/lib/commonjs/servers/model/preprocess/converter.js +2 -2
  588. package/lib/commonjs/servers/model/preprocess/master.js +3 -3
  589. package/lib/commonjs/servers/model/preprocess/parallel.js +6 -6
  590. package/lib/commonjs/servers/model/preprocess/preprocess.js +4 -4
  591. package/lib/commonjs/servers/model/preprocess.js +1 -1
  592. package/lib/commonjs/servers/model/properties/providers/pdbe.js +8 -8
  593. package/lib/commonjs/servers/model/properties/providers/wwpdb.js +12 -12
  594. package/lib/commonjs/servers/model/property-provider.js +3 -3
  595. package/lib/commonjs/servers/model/query.js +1 -1
  596. package/lib/commonjs/servers/model/server/api-local.js +2 -2
  597. package/lib/commonjs/servers/model/server/api-schema.js +2 -2
  598. package/lib/commonjs/servers/model/server/api-web.js +5 -5
  599. package/lib/commonjs/servers/model/server/api.js +6 -6
  600. package/lib/commonjs/servers/model/server/query.js +15 -15
  601. package/lib/commonjs/servers/model/server/structure-wrapper.js +21 -21
  602. package/lib/commonjs/servers/model/server.js +2 -2
  603. package/lib/commonjs/servers/model/utils/fetch-props-pdbe.js +6 -6
  604. package/lib/commonjs/servers/model/utils/fetch-retry.js +3 -3
  605. package/lib/commonjs/servers/model/utils/writer.js +3 -3
  606. package/lib/commonjs/servers/plugin-state/config.js +1 -1
  607. package/lib/commonjs/servers/plugin-state/index.js +6 -6
  608. package/lib/commonjs/servers/volume/common/binary-schema.js +1 -1
  609. package/lib/commonjs/servers/volume/common/data-format.js +3 -3
  610. package/lib/commonjs/servers/volume/common/file.js +8 -8
  611. package/lib/commonjs/servers/volume/config.js +6 -6
  612. package/lib/commonjs/servers/volume/pack/format/ccp4.js +4 -4
  613. package/lib/commonjs/servers/volume/pack/format/dsn6.js +4 -4
  614. package/lib/commonjs/servers/volume/pack/format.js +3 -3
  615. package/lib/commonjs/servers/volume/pack/main.js +13 -13
  616. package/lib/commonjs/servers/volume/pack/sampling.js +13 -13
  617. package/lib/commonjs/servers/volume/pack/writer.js +2 -2
  618. package/lib/commonjs/servers/volume/pack.js +1 -1
  619. package/lib/commonjs/servers/volume/query.js +4 -4
  620. package/lib/commonjs/servers/volume/server/algebra/box.js +1 -1
  621. package/lib/commonjs/servers/volume/server/api.js +8 -8
  622. package/lib/commonjs/servers/volume/server/local-api.js +8 -8
  623. package/lib/commonjs/servers/volume/server/query/compose.js +8 -8
  624. package/lib/commonjs/servers/volume/server/query/execute.js +10 -10
  625. package/lib/commonjs/servers/volume/server/query/identify.js +2 -2
  626. package/lib/commonjs/servers/volume/server/web-api.js +7 -7
  627. package/lib/commonjs/servers/volume/server.js +2 -2
  628. package/lib/examples/alpha-orbitals/controls.js +2 -2
  629. package/lib/examples/basic-wrapper/controls.js +1 -1
  630. package/lib/examples/proteopedia-wrapper/ui/controls.js +1 -1
  631. package/lib/extensions/cellpack/model.js +4 -2
  632. package/lib/extensions/cellpack/state.js +2 -2
  633. package/lib/extensions/geo-export/ui.js +2 -2
  634. package/lib/extensions/model-export/ui.js +2 -2
  635. package/lib/extensions/mp4-export/ui.js +2 -2
  636. package/lib/extensions/rcsb/assembly-symmetry/ui.js +3 -3
  637. package/lib/extensions/zenodo/index.d.ts +7 -0
  638. package/lib/extensions/zenodo/index.js +32 -0
  639. package/lib/extensions/zenodo/ui.d.ts +61 -0
  640. package/lib/extensions/zenodo/ui.js +303 -0
  641. package/lib/mol-canvas3d/camera.js +2 -1
  642. package/lib/mol-canvas3d/helper/camera-helper.js +1 -1
  643. package/lib/mol-canvas3d/helper/handle-helper.js +1 -1
  644. package/lib/mol-canvas3d/helper/interaction-events.js +1 -1
  645. package/lib/mol-geo/geometry/text/text-builder.js +2 -1
  646. package/lib/mol-gl/shader-code.js +2 -1
  647. package/lib/mol-gl/webgl/buffer.js +2 -3
  648. package/lib/mol-io/common/binary-cif/classifier.js +3 -2
  649. package/lib/mol-io/common/binary-cif/decoder.js +4 -3
  650. package/lib/mol-io/common/io-buffer.d.ts +206 -0
  651. package/lib/mol-io/common/io-buffer.js +405 -0
  652. package/lib/mol-io/common/netcdf/reader.d.ts +78 -0
  653. package/lib/mol-io/common/netcdf/reader.js +456 -0
  654. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  655. package/lib/mol-io/reader/nctraj/parser.d.ts +18 -0
  656. package/lib/mol-io/reader/nctraj/parser.js +97 -0
  657. package/lib/mol-io/reader/prmtop/parser.d.ts +58 -0
  658. package/lib/mol-io/reader/prmtop/parser.js +168 -0
  659. package/lib/mol-io/reader/top/parser.d.ts +37 -0
  660. package/lib/mol-io/reader/top/parser.js +299 -0
  661. package/lib/mol-io/reader/trr/parser.d.ts +22 -0
  662. package/lib/mol-io/reader/trr/parser.js +142 -0
  663. package/lib/mol-io/writer/cif/encoder.js +2 -1
  664. package/lib/mol-model/sequence/sequence.js +2 -1
  665. package/lib/mol-model/structure/model/types/saccharides.d.ts +8 -0
  666. package/lib/mol-model/structure/model/types/saccharides.js +8 -0
  667. package/lib/mol-model/structure/structure/carbohydrates/constants.d.ts +1 -1
  668. package/lib/mol-model/structure/structure/carbohydrates/constants.js +6 -9
  669. package/lib/mol-model-formats/structure/basic/atomic.d.ts +1 -1
  670. package/lib/mol-model-formats/structure/basic/atomic.js +1 -14
  671. package/lib/mol-model-formats/structure/basic/parser.d.ts +1 -1
  672. package/lib/mol-model-formats/structure/basic/parser.js +1 -1
  673. package/lib/mol-model-formats/structure/basic/schema.d.ts +2 -2
  674. package/lib/mol-model-formats/structure/basic/schema.js +7 -2
  675. package/lib/mol-model-formats/structure/basic/util.d.ts +33 -2
  676. package/lib/mol-model-formats/structure/basic/util.js +24 -1
  677. package/lib/mol-model-formats/structure/cif-core.js +4 -4
  678. package/lib/mol-model-formats/structure/common/component.js +5 -1
  679. package/lib/mol-model-formats/structure/cube.js +3 -3
  680. package/lib/mol-model-formats/structure/gro.js +3 -1
  681. package/lib/mol-model-formats/structure/mmcif.d.ts +1 -1
  682. package/lib/mol-model-formats/structure/mmcif.js +4 -2
  683. package/lib/mol-model-formats/structure/mol.js +3 -3
  684. package/lib/mol-model-formats/structure/mol2.js +4 -4
  685. package/lib/mol-model-formats/structure/nctraj.d.ts +9 -0
  686. package/lib/mol-model-formats/structure/nctraj.js +56 -0
  687. package/lib/mol-model-formats/structure/pdb.d.ts +1 -1
  688. package/lib/mol-model-formats/structure/pdb.js +5 -3
  689. package/lib/mol-model-formats/structure/prmtop.d.ts +16 -0
  690. package/lib/mol-model-formats/structure/prmtop.js +144 -0
  691. package/lib/mol-model-formats/structure/property/symmetry.js +11 -1
  692. package/lib/mol-model-formats/structure/psf.js +3 -1
  693. package/lib/mol-model-formats/structure/top.d.ts +16 -0
  694. package/lib/mol-model-formats/structure/top.js +186 -0
  695. package/lib/mol-model-formats/structure/trr.d.ts +9 -0
  696. package/lib/mol-model-formats/structure/trr.js +42 -0
  697. package/lib/mol-model-formats/structure/util.d.ts +2 -2
  698. package/lib/mol-model-formats/structure/util.js +19 -20
  699. package/lib/mol-model-formats/structure/xyz.js +2 -2
  700. package/lib/mol-plugin/context.d.ts +2 -1
  701. package/lib/mol-plugin/context.js +4 -3
  702. package/lib/mol-plugin/spec.js +1 -1
  703. package/lib/mol-plugin/version.js +2 -2
  704. package/lib/mol-plugin-state/actions/file.d.ts +1 -1
  705. package/lib/mol-plugin-state/actions/file.js +88 -55
  706. package/lib/mol-plugin-state/actions/structure.d.ts +11 -2
  707. package/lib/mol-plugin-state/actions/structure.js +174 -4
  708. package/lib/mol-plugin-state/actions/volume.js +3 -2
  709. package/lib/mol-plugin-state/formats/{structure.d.ts → coordinates.d.ts} +34 -18
  710. package/lib/mol-plugin-state/formats/coordinates.js +67 -0
  711. package/lib/mol-plugin-state/formats/registry.d.ts +3 -3
  712. package/lib/mol-plugin-state/formats/registry.js +13 -8
  713. package/lib/mol-plugin-state/formats/topology.d.ts +73 -0
  714. package/lib/mol-plugin-state/formats/topology.js +84 -0
  715. package/lib/mol-plugin-state/helpers/structure-component.js +2 -1
  716. package/lib/mol-plugin-state/manager/snapshots.js +4 -4
  717. package/lib/mol-plugin-state/objects.d.ts +47 -1
  718. package/lib/mol-plugin-state/objects.js +17 -1
  719. package/lib/mol-plugin-state/transforms/data.d.ts +6 -0
  720. package/lib/mol-plugin-state/transforms/data.js +61 -9
  721. package/lib/mol-plugin-state/transforms/model.d.ts +14 -2
  722. package/lib/mol-plugin-state/transforms/model.js +112 -3
  723. package/lib/mol-plugin-ui/base.js +1 -1
  724. package/lib/mol-plugin-ui/controls/action-menu.js +7 -7
  725. package/lib/mol-plugin-ui/controls/color.js +3 -3
  726. package/lib/mol-plugin-ui/controls/common.js +10 -10
  727. package/lib/mol-plugin-ui/controls/icons.js +70 -70
  728. package/lib/mol-plugin-ui/controls/legend.js +3 -3
  729. package/lib/mol-plugin-ui/controls/line-graph/line-graph-component.js +1 -1
  730. package/lib/mol-plugin-ui/controls/parameters.js +51 -51
  731. package/lib/mol-plugin-ui/controls/screenshot.js +2 -2
  732. package/lib/mol-plugin-ui/controls/slider.js +5 -5
  733. package/lib/mol-plugin-ui/controls.js +7 -7
  734. package/lib/mol-plugin-ui/custom/volume.js +4 -4
  735. package/lib/mol-plugin-ui/left-panel.d.ts +8 -1
  736. package/lib/mol-plugin-ui/left-panel.js +33 -12
  737. package/lib/mol-plugin-ui/plugin.js +10 -10
  738. package/lib/mol-plugin-ui/sequence/sequence.js +1 -1
  739. package/lib/mol-plugin-ui/sequence.js +5 -5
  740. package/lib/mol-plugin-ui/state/actions.js +1 -1
  741. package/lib/mol-plugin-ui/state/animation.js +1 -1
  742. package/lib/mol-plugin-ui/state/common.js +7 -7
  743. package/lib/mol-plugin-ui/state/snapshots.js +9 -9
  744. package/lib/mol-plugin-ui/state/tree.js +14 -14
  745. package/lib/mol-plugin-ui/state/update-transform.js +1 -1
  746. package/lib/mol-plugin-ui/structure/components.js +10 -10
  747. package/lib/mol-plugin-ui/structure/focus.js +1 -1
  748. package/lib/mol-plugin-ui/structure/generic.js +4 -4
  749. package/lib/mol-plugin-ui/structure/measurements.js +8 -8
  750. package/lib/mol-plugin-ui/structure/quick-styles.js +2 -2
  751. package/lib/mol-plugin-ui/structure/selection.js +7 -7
  752. package/lib/mol-plugin-ui/structure/source.js +4 -4
  753. package/lib/mol-plugin-ui/structure/superposition.js +8 -8
  754. package/lib/mol-plugin-ui/structure/volume.js +4 -4
  755. package/lib/mol-plugin-ui/task.js +5 -5
  756. package/lib/mol-plugin-ui/toast.js +4 -4
  757. package/lib/mol-plugin-ui/viewport/canvas.js +3 -3
  758. package/lib/mol-plugin-ui/viewport/help.js +8 -8
  759. package/lib/mol-plugin-ui/viewport/screenshot.js +3 -3
  760. package/lib/mol-plugin-ui/viewport/simple-settings.js +1 -1
  761. package/lib/mol-plugin-ui/viewport.js +4 -4
  762. package/lib/mol-script/language/parser.js +7 -4
  763. package/lib/mol-task/util/scheduler.d.ts +2 -2
  764. package/lib/mol-task/util/scheduler.js +7 -7
  765. package/lib/mol-theme/color/hydrophobicity.js +2 -2
  766. package/lib/mol-util/data-source.js +2 -1
  767. package/lib/mol-util/file-info.d.ts +1 -3
  768. package/lib/mol-util/file-info.js +2 -10
  769. package/lib/mol-util/index.d.ts +1 -0
  770. package/lib/mol-util/index.js +5 -0
  771. package/lib/mol-util/zip/deflate.js +2 -1
  772. package/lib/mol-util/zip/zip.d.ts +7 -1
  773. package/lib/mol-util/zip/zip.js +5 -1
  774. package/lib/servers/model/config.d.ts +2 -2
  775. package/package.json +16 -16
  776. package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -64
  777. package/lib/mol-plugin-state/formats/structure.js +0 -61
@@ -21,19 +21,19 @@ var common_1 = require("../controls/common");
21
21
  var icons_1 = require("../controls/icons");
22
22
  var parameters_1 = require("../controls/parameters");
23
23
  var StateSnapshots = /** @class */ (function (_super) {
24
- (0, tslib_1.__extends)(StateSnapshots, _super);
24
+ tslib_1.__extends(StateSnapshots, _super);
25
25
  function StateSnapshots() {
26
26
  return _super !== null && _super.apply(this, arguments) || this;
27
27
  }
28
28
  StateSnapshots.prototype.render = function () {
29
29
  var _a;
30
- return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(common_1.SectionHeader, { icon: icons_1.SaveOutlinedSvg, title: 'Plugin State' }, void 0), (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginBottom: '10px' } }, { children: (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: 'Save Options', initiallyExpanded: false }, { children: (0, jsx_runtime_1.jsx)(LocalStateSnapshotParams, {}, void 0) }), void 0) }), void 0), (0, jsx_runtime_1.jsx)(LocalStateSnapshots, {}, void 0), (0, jsx_runtime_1.jsx)(LocalStateSnapshotList, {}, void 0), (0, jsx_runtime_1.jsx)(common_1.SectionHeader, { title: 'Save as File', accent: 'blue' }, void 0), (0, jsx_runtime_1.jsx)(StateExportImportControls, {}, void 0), ((_a = this.plugin.spec.components) === null || _a === void 0 ? void 0 : _a.remoteState) !== 'none' && (0, jsx_runtime_1.jsx)(RemoteStateSnapshots, {}, void 0)] }, void 0);
30
+ return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(common_1.SectionHeader, { icon: icons_1.SaveOutlinedSvg, title: 'Plugin State' }), (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginBottom: '10px' } }, { children: (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, tslib_1.__assign({ header: 'Save Options', initiallyExpanded: false }, { children: (0, jsx_runtime_1.jsx)(LocalStateSnapshotParams, {}) })) })), (0, jsx_runtime_1.jsx)(LocalStateSnapshots, {}), (0, jsx_runtime_1.jsx)(LocalStateSnapshotList, {}), (0, jsx_runtime_1.jsx)(common_1.SectionHeader, { title: 'Save as File', accent: 'blue' }), (0, jsx_runtime_1.jsx)(StateExportImportControls, {}), ((_a = this.plugin.spec.components) === null || _a === void 0 ? void 0 : _a.remoteState) !== 'none' && (0, jsx_runtime_1.jsx)(RemoteStateSnapshots, {})] });
31
31
  };
32
32
  return StateSnapshots;
33
33
  }(base_1.PluginUIComponent));
34
34
  exports.StateSnapshots = StateSnapshots;
35
35
  var StateExportImportControls = /** @class */ (function (_super) {
36
- (0, tslib_1.__extends)(StateExportImportControls, _super);
36
+ tslib_1.__extends(StateExportImportControls, _super);
37
37
  function StateExportImportControls() {
38
38
  var _this = _super !== null && _super.apply(this, arguments) || this;
39
39
  _this.downloadToFileJson = function () {
@@ -58,13 +58,13 @@ var StateExportImportControls = /** @class */ (function (_super) {
58
58
  return _this;
59
59
  }
60
60
  StateExportImportControls.prototype.render = function () {
61
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.downloadToFileJson, title: 'Save the state description. Input data are loaded using the provided sources. Does not work if local files are used as input.' }, { children: "State" }), void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.GetAppSvg, onClick: this.downloadToFileZip, title: 'Save the state including the input data.' }, { children: "Session" }), void 0), (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-btn msp-btn-block msp-btn-action msp-loader-msp-btn-file' }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.OpenInBrowserSvg, inline: true }, void 0), " Open ", (0, jsx_runtime_1.jsx)("input", { onChange: this.open, type: 'file', multiple: false, accept: '.molx,.molj' }, void 0)] }), void 0)] }), void 0), (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-help-text', style: { padding: '10px' } }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.WarningSvg }, void 0), " This is an experimental feature and stored states/sessions might not be openable in a future version."] }), void 0)] }, void 0);
61
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.GetAppSvg, onClick: this.downloadToFileJson, title: 'Save the state description. Input data are loaded using the provided sources. Does not work if local files are used as input.' }, { children: "State" })), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.GetAppSvg, onClick: this.downloadToFileZip, title: 'Save the state including the input data.' }, { children: "Session" })), (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-btn msp-btn-block msp-btn-action msp-loader-msp-btn-file' }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.OpenInBrowserSvg, inline: true }), " Open ", (0, jsx_runtime_1.jsx)("input", { onChange: this.open, type: 'file', multiple: false, accept: '.molx,.molj' })] }))] })), (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-help-text', style: { padding: '10px' } }, { children: [(0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.WarningSvg }), " This is an experimental feature and stored states/sessions might not be openable in a future version."] }))] });
62
62
  };
63
63
  return StateExportImportControls;
64
64
  }(base_1.PluginUIComponent));
65
65
  exports.StateExportImportControls = StateExportImportControls;
66
66
  var LocalStateSnapshotParams = /** @class */ (function (_super) {
67
- (0, tslib_1.__extends)(LocalStateSnapshotParams, _super);
67
+ tslib_1.__extends(LocalStateSnapshotParams, _super);
68
68
  function LocalStateSnapshotParams() {
69
69
  return _super !== null && _super.apply(this, arguments) || this;
70
70
  }
@@ -73,13 +73,13 @@ var LocalStateSnapshotParams = /** @class */ (function (_super) {
73
73
  this.subscribe(this.plugin.state.snapshotParams, function () { return _this.forceUpdate(); });
74
74
  };
75
75
  LocalStateSnapshotParams.prototype.render = function () {
76
- return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.PluginState.SnapshotParams, values: this.plugin.state.snapshotParams.value, onChangeValues: this.plugin.state.setSnapshotParams }, void 0);
76
+ return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: state_1.PluginState.SnapshotParams, values: this.plugin.state.snapshotParams.value, onChangeValues: this.plugin.state.setSnapshotParams });
77
77
  };
78
78
  return LocalStateSnapshotParams;
79
79
  }(base_1.PluginUIComponent));
80
80
  exports.LocalStateSnapshotParams = LocalStateSnapshotParams;
81
81
  var LocalStateSnapshots = /** @class */ (function (_super) {
82
- (0, tslib_1.__extends)(LocalStateSnapshots, _super);
82
+ tslib_1.__extends(LocalStateSnapshots, _super);
83
83
  function LocalStateSnapshots() {
84
84
  var _this = _super !== null && _super.apply(this, arguments) || this;
85
85
  _this.state = { params: param_definition_1.ParamDefinition.getDefaultValues(LocalStateSnapshots.Params) };
@@ -99,7 +99,7 @@ var LocalStateSnapshots = /** @class */ (function (_super) {
99
99
  return !(0, mol_util_1.shallowEqualObjects)(this.props, nextProps) || !(0, mol_util_1.shallowEqualObjects)(this.state, nextState);
100
100
  };
101
101
  LocalStateSnapshots.prototype.render = function () {
102
- return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: LocalStateSnapshots.Params, values: this.state.params, onEnter: this.add, onChangeValues: this.updateParams }, void 0), (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.IconButton, { onClick: this.clear, svg: icons_1.DeleteOutlinedSvg, title: 'Remove All' }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: this.add, icon: icons_1.AddSvg, style: { textAlign: 'right' }, commit: true }, { children: "Add" }), void 0)] }), void 0)] }, void 0);
102
+ return (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: LocalStateSnapshots.Params, values: this.state.params, onEnter: this.add, onChangeValues: this.updateParams }), (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.IconButton, { onClick: this.clear, svg: icons_1.DeleteOutlinedSvg, title: 'Remove All' }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ onClick: this.add, icon: icons_1.AddSvg, style: { textAlign: 'right' }, commit: true }, { children: "Add" }))] }))] });
103
103
  };
104
104
  LocalStateSnapshots.Params = {
105
105
  name: param_definition_1.ParamDefinition.Text(),
@@ -109,7 +109,7 @@ var LocalStateSnapshots = /** @class */ (function (_super) {
109
109
  }(base_1.PluginUIComponent));
110
110
  exports.LocalStateSnapshots = LocalStateSnapshots;
111
111
  var LocalStateSnapshotList = /** @class */ (function (_super) {
112
- (0, tslib_1.__extends)(LocalStateSnapshotList, _super);
112
+ tslib_1.__extends(LocalStateSnapshotList, _super);
113
113
  function LocalStateSnapshotList() {
114
114
  var _this = _super !== null && _super.apply(this, arguments) || this;
115
115
  _this.apply = function (e) {
@@ -151,13 +151,13 @@ var LocalStateSnapshotList = /** @class */ (function (_super) {
151
151
  LocalStateSnapshotList.prototype.render = function () {
152
152
  var _this = this;
153
153
  var current = this.plugin.managers.snapshot.state.current;
154
- return (0, jsx_runtime_1.jsx)("ul", (0, tslib_1.__assign)({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.plugin.managers.snapshot.state.entries.map(function (e) { return (0, jsx_runtime_1.jsxs)("li", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ "data-id": e.snapshot.id, onClick: _this.apply, className: 'msp-no-overflow' }, { children: [(0, jsx_runtime_1.jsx)("span", (0, tslib_1.__assign)({ style: { fontWeight: e.snapshot.id === current ? 'bold' : void 0 } }, { children: e.name || new Date(e.timestamp).toLocaleString() }), void 0), " ", (0, jsx_runtime_1.jsx)("small", { children: "".concat(e.snapshot.durationInMs ? (0, now_1.formatTimespan)(e.snapshot.durationInMs, false) + "".concat(e.description ? ', ' : '') : '').concat(e.description ? e.description : '') }, void 0)] }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowUpwardSvg, "data-id": e.snapshot.id, title: 'Move Up', onClick: _this.moveUp, flex: '20px' }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowDownwardSvg, "data-id": e.snapshot.id, title: 'Move Down', onClick: _this.moveDown, flex: '20px' }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.SwapHorizSvg, "data-id": e.snapshot.id, title: 'Replace', onClick: _this.replace, flex: '20px' }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, "data-id": e.snapshot.id, title: 'Remove', onClick: _this.remove, flex: '20px' }, void 0)] }), e.snapshot.id); }) }), void 0);
154
+ return (0, jsx_runtime_1.jsx)("ul", tslib_1.__assign({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.plugin.managers.snapshot.state.entries.map(function (e) { return (0, jsx_runtime_1.jsxs)("li", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ "data-id": e.snapshot.id, onClick: _this.apply, className: 'msp-no-overflow' }, { children: [(0, jsx_runtime_1.jsx)("span", tslib_1.__assign({ style: { fontWeight: e.snapshot.id === current ? 'bold' : void 0 } }, { children: e.name || new Date(e.timestamp).toLocaleString() })), " ", (0, jsx_runtime_1.jsx)("small", { children: "".concat(e.snapshot.durationInMs ? (0, now_1.formatTimespan)(e.snapshot.durationInMs, false) + "".concat(e.description ? ', ' : '') : '').concat(e.description ? e.description : '') })] })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowUpwardSvg, "data-id": e.snapshot.id, title: 'Move Up', onClick: _this.moveUp, flex: '20px' }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.ArrowDownwardSvg, "data-id": e.snapshot.id, title: 'Move Down', onClick: _this.moveDown, flex: '20px' }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.SwapHorizSvg, "data-id": e.snapshot.id, title: 'Replace', onClick: _this.replace, flex: '20px' }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, "data-id": e.snapshot.id, title: 'Remove', onClick: _this.remove, flex: '20px' })] }), e.snapshot.id); }) }));
155
155
  };
156
156
  return LocalStateSnapshotList;
157
157
  }(base_1.PluginUIComponent));
158
158
  exports.LocalStateSnapshotList = LocalStateSnapshotList;
159
159
  var RemoteStateSnapshots = /** @class */ (function (_super) {
160
- (0, tslib_1.__extends)(RemoteStateSnapshots, _super);
160
+ tslib_1.__extends(RemoteStateSnapshots, _super);
161
161
  function RemoteStateSnapshots() {
162
162
  var _this = _super !== null && _super.apply(this, arguments) || this;
163
163
  _this.Params = {
@@ -175,9 +175,9 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
175
175
  }, { isFlat: true })
176
176
  };
177
177
  _this._mounted = false;
178
- _this.refresh = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
178
+ _this.refresh = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
179
179
  var json, entries, _i, json_1, e, e_1;
180
- return (0, tslib_1.__generator)(this, function (_a) {
180
+ return tslib_1.__generator(this, function (_a) {
181
181
  switch (_a.label) {
182
182
  case 0:
183
183
  _a.trys.push([0, 2, , 3]);
@@ -194,7 +194,7 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
194
194
  entries = (0, immutable_1.OrderedMap)().asMutable();
195
195
  for (_i = 0, json_1 = json; _i < json_1.length; _i++) {
196
196
  e = json_1[_i];
197
- entries.set(e.id, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, e), { url: this.serverUrl("get/".concat(e.id)), removeUrl: this.serverUrl("remove/".concat(e.id)) }));
197
+ entries.set(e.id, tslib_1.__assign(tslib_1.__assign({}, e), { url: this.serverUrl("get/".concat(e.id)), removeUrl: this.serverUrl("remove/".concat(e.id)) }));
198
198
  }
199
199
  if (this._mounted)
200
200
  this.setState({ entries: entries.asImmutable(), isBusy: false });
@@ -210,8 +210,8 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
210
210
  }
211
211
  });
212
212
  }); };
213
- _this.upload = function () { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
214
- return (0, tslib_1.__generator)(this, function (_a) {
213
+ _this.upload = function () { return tslib_1.__awaiter(_this, void 0, void 0, function () {
214
+ return tslib_1.__generator(this, function (_a) {
215
215
  switch (_a.label) {
216
216
  case 0:
217
217
  this.setState({ isBusy: true });
@@ -233,9 +233,9 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
233
233
  }
234
234
  });
235
235
  }); };
236
- _this.fetch = function (e) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
236
+ _this.fetch = function (e) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
237
237
  var id, entry;
238
- return (0, tslib_1.__generator)(this, function (_a) {
238
+ return tslib_1.__generator(this, function (_a) {
239
239
  switch (_a.label) {
240
240
  case 0:
241
241
  id = e.currentTarget.getAttribute('data-id');
@@ -260,9 +260,9 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
260
260
  }
261
261
  });
262
262
  }); };
263
- _this.remove = function (e) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
263
+ _this.remove = function (e) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
264
264
  var id, entry, e_2;
265
- return (0, tslib_1.__generator)(this, function (_a) {
265
+ return tslib_1.__generator(this, function (_a) {
266
266
  switch (_a.label) {
267
267
  case 0:
268
268
  id = e.currentTarget.getAttribute('data-id');
@@ -305,24 +305,24 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
305
305
  };
306
306
  RemoteStateSnapshots.prototype.render = function () {
307
307
  var _this = this;
308
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(common_1.SectionHeader, { title: 'Remote States', accent: 'blue' }, void 0), !this.props.listOnly && (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.Params, values: this.state.params, onEnter: this.upload, onChange: function (p) {
308
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(common_1.SectionHeader, { title: 'Remote States', accent: 'blue' }), !this.props.listOnly && (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.Params, values: this.state.params, onEnter: this.upload, onChange: function (p) {
309
309
  var _a;
310
- _this.setState({ params: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, _this.state.params), (_a = {}, _a[p.name] = p.value, _a)) });
311
- }, isDisabled: this.state.isBusy }, void 0), (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.IconButton, { onClick: this.refresh, disabled: this.state.isBusy, svg: icons_1.RefreshSvg }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.CloudUploadSvg, onClick: this.upload, disabled: this.state.isBusy, commit: true }, { children: "Upload" }), void 0)] }), void 0)] }, void 0), (0, jsx_runtime_1.jsx)(RemoteStateSnapshotList, { entries: this.state.entries, isBusy: this.state.isBusy, serverUrl: this.state.params.options.serverUrl, fetch: this.fetch, remove: this.props.listOnly ? void 0 : this.remove }, void 0), this.props.listOnly && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginTop: '10px' } }, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.ListOnlyParams, values: this.state.params, onEnter: this.upload, onChange: function (p) {
310
+ _this.setState({ params: tslib_1.__assign(tslib_1.__assign({}, _this.state.params), (_a = {}, _a[p.name] = p.value, _a)) });
311
+ }, isDisabled: this.state.isBusy }), (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.IconButton, { onClick: this.refresh, disabled: this.state.isBusy, svg: icons_1.RefreshSvg }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.CloudUploadSvg, onClick: this.upload, disabled: this.state.isBusy, commit: true }, { children: "Upload" }))] }))] }), (0, jsx_runtime_1.jsx)(RemoteStateSnapshotList, { entries: this.state.entries, isBusy: this.state.isBusy, serverUrl: this.state.params.options.serverUrl, fetch: this.fetch, remove: this.props.listOnly ? void 0 : this.remove }), this.props.listOnly && (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { marginTop: '10px' } }, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.ListOnlyParams, values: this.state.params, onEnter: this.upload, onChange: function (p) {
312
312
  var _a;
313
- _this.setState({ params: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, _this.state.params), (_a = {}, _a[p.name] = p.value, _a)) });
314
- }, isDisabled: this.state.isBusy }, void 0), (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ onClick: this.refresh, disabled: this.state.isBusy, icon: icons_1.RefreshSvg }, { children: "Refresh" }), void 0) }), void 0)] }), void 0)] }, void 0);
313
+ _this.setState({ params: tslib_1.__assign(tslib_1.__assign({}, _this.state.params), (_a = {}, _a[p.name] = p.value, _a)) });
314
+ }, isDisabled: this.state.isBusy }), (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ onClick: this.refresh, disabled: this.state.isBusy, icon: icons_1.RefreshSvg }, { children: "Refresh" })) }))] }))] });
315
315
  };
316
316
  return RemoteStateSnapshots;
317
317
  }(base_1.PluginUIComponent));
318
318
  exports.RemoteStateSnapshots = RemoteStateSnapshots;
319
319
  var RemoteStateSnapshotList = /** @class */ (function (_super) {
320
- (0, tslib_1.__extends)(RemoteStateSnapshotList, _super);
320
+ tslib_1.__extends(RemoteStateSnapshotList, _super);
321
321
  function RemoteStateSnapshotList() {
322
322
  var _this = _super !== null && _super.apply(this, arguments) || this;
323
- _this.open = function (e) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
323
+ _this.open = function (e) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
324
324
  var id, entry, url, qi;
325
- return (0, tslib_1.__generator)(this, function (_a) {
325
+ return tslib_1.__generator(this, function (_a) {
326
326
  id = e.currentTarget.getAttribute('data-id');
327
327
  if (!id)
328
328
  return [2 /*return*/];
@@ -342,7 +342,7 @@ var RemoteStateSnapshotList = /** @class */ (function (_super) {
342
342
  }
343
343
  RemoteStateSnapshotList.prototype.render = function () {
344
344
  var _this = this;
345
- return (0, jsx_runtime_1.jsx)("ul", (0, tslib_1.__assign)({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.props.entries.valueSeq().map(function (e) { return (0, jsx_runtime_1.jsxs)("li", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ "data-id": e.id, onClick: _this.props.fetch, disabled: _this.props.isBusy, onContextMenu: _this.open, title: 'Click to download, right-click to open in a new tab.' }, { children: [e.name || new Date(e.timestamp).toLocaleString(), " ", (0, jsx_runtime_1.jsx)("small", { children: e.description }, void 0)] }), void 0), !e.isSticky && _this.props.remove && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, "data-id": e.id, title: 'Remove', onClick: _this.props.remove, disabled: _this.props.isBusy, small: true }, void 0)] }), e.id); }) }), void 0);
345
+ return (0, jsx_runtime_1.jsx)("ul", tslib_1.__assign({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.props.entries.valueSeq().map(function (e) { return (0, jsx_runtime_1.jsxs)("li", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ "data-id": e.id, onClick: _this.props.fetch, disabled: _this.props.isBusy, onContextMenu: _this.open, title: 'Click to download, right-click to open in a new tab.' }, { children: [e.name || new Date(e.timestamp).toLocaleString(), " ", (0, jsx_runtime_1.jsx)("small", { children: e.description })] })), !e.isSticky && _this.props.remove && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, "data-id": e.id, title: 'Remove', onClick: _this.props.remove, disabled: _this.props.isBusy, small: true })] }), e.id); }) }));
346
346
  };
347
347
  return RemoteStateSnapshotList;
348
348
  }(base_1.PurePluginUIComponent));
@@ -14,7 +14,7 @@ var icons_1 = require("../controls/icons");
14
14
  var apply_action_1 = require("./apply-action");
15
15
  var update_transform_1 = require("./update-transform");
16
16
  var StateTree = /** @class */ (function (_super) {
17
- (0, tslib_1.__extends)(StateTree, _super);
17
+ tslib_1.__extends(StateTree, _super);
18
18
  function StateTree() {
19
19
  var _this = _super !== null && _super.apply(this, arguments) || this;
20
20
  _this.state = { showActions: true };
@@ -42,15 +42,15 @@ var StateTree = /** @class */ (function (_super) {
42
42
  StateTree.prototype.render = function () {
43
43
  var ref = this.props.state.tree.root.ref;
44
44
  if (this.state.showActions) {
45
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { margin: '10px', cursor: 'default' } }, { children: [(0, jsx_runtime_1.jsx)("p", { children: "Nothing to see here yet." }, void 0), (0, jsx_runtime_1.jsxs)("p", { children: ["Structures and Volumes can be loaded from the ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.HomeOutlinedSvg }, void 0), " tab."] }, void 0)] }), void 0);
45
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { margin: '10px', cursor: 'default' } }, { children: [(0, jsx_runtime_1.jsx)("p", { children: "Nothing to see here yet." }), (0, jsx_runtime_1.jsxs)("p", { children: ["Structures and Volumes can be loaded from the ", (0, jsx_runtime_1.jsx)(icons_1.Icon, { svg: icons_1.HomeOutlinedSvg }), " tab."] })] }));
46
46
  }
47
- return (0, jsx_runtime_1.jsx)(StateTreeNode, { cell: this.props.state.cells.get(ref), depth: 0 }, void 0);
47
+ return (0, jsx_runtime_1.jsx)(StateTreeNode, { cell: this.props.state.cells.get(ref), depth: 0 });
48
48
  };
49
49
  return StateTree;
50
50
  }(base_1.PluginUIComponent));
51
51
  exports.StateTree = StateTree;
52
52
  var StateTreeNode = /** @class */ (function (_super) {
53
- (0, tslib_1.__extends)(StateTreeNode, _super);
53
+ tslib_1.__extends(StateTreeNode, _super);
54
54
  function StateTreeNode() {
55
55
  var _this = _super !== null && _super.apply(this, arguments) || this;
56
56
  _this.state = {
@@ -122,17 +122,17 @@ var StateTreeNode = /** @class */ (function (_super) {
122
122
  if (!this.state.showLabel) {
123
123
  if (children.size === 0)
124
124
  return null;
125
- return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: children.map(function (c) { return (0, jsx_runtime_1.jsx)(StateTreeNode, { cell: cell.parent.cells.get(c), depth: _this.props.depth }, c); }) }, void 0);
125
+ return (0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: children.map(function (c) { return (0, jsx_runtime_1.jsx)(StateTreeNode, { cell: cell.parent.cells.get(c), depth: _this.props.depth }, c); }) });
126
126
  }
127
127
  var newDepth = this.props.depth + 1;
128
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(StateTreeNodeLabel, { cell: cell, depth: this.props.depth }, void 0), children.size === 0
128
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(StateTreeNodeLabel, { cell: cell, depth: this.props.depth }), children.size === 0
129
129
  ? void 0
130
- : (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { display: this.state.isCollapsed ? 'none' : 'block' } }, { children: children.map(function (c) { return (0, jsx_runtime_1.jsx)(StateTreeNode, { cell: cell.parent.cells.get(c), depth: newDepth }, c); }) }), void 0)] }, void 0);
130
+ : (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { display: this.state.isCollapsed ? 'none' : 'block' } }, { children: children.map(function (c) { return (0, jsx_runtime_1.jsx)(StateTreeNode, { cell: cell.parent.cells.get(c), depth: newDepth }, c); }) }))] });
131
131
  };
132
132
  return StateTreeNode;
133
133
  }(base_1.PluginUIComponent));
134
134
  var StateTreeNodeLabel = /** @class */ (function (_super) {
135
- (0, tslib_1.__extends)(StateTreeNodeLabel, _super);
135
+ tslib_1.__extends(StateTreeNodeLabel, _super);
136
136
  function StateTreeNodeLabel() {
137
137
  var _this = _super !== null && _super.apply(this, arguments) || this;
138
138
  _this.state = {
@@ -231,11 +231,11 @@ var StateTreeNodeLabel = /** @class */ (function (_super) {
231
231
  get: function () {
232
232
  var _this = this;
233
233
  var cell = this.props.cell;
234
- var actions = (0, tslib_1.__spreadArray)([], cell.parent.actions.fromCell(cell, this.plugin), true);
234
+ var actions = tslib_1.__spreadArray([], cell.parent.actions.fromCell(cell, this.plugin), true);
235
235
  if (actions.length === 0)
236
236
  return;
237
237
  actions.sort(function (a, b) { return a.definition.display.name < b.definition.display.name ? -1 : a.definition.display.name === b.definition.display.name ? 0 : 1; });
238
- return (0, tslib_1.__spreadArray)([
238
+ return tslib_1.__spreadArray([
239
239
  action_menu_1.ActionMenu.Header('Apply Action')
240
240
  ], actions.map(function (a) { return action_menu_1.ActionMenu.Item(a.definition.display.name, function () { return _this.setState({ action: 'apply', currentAction: a }); }); }), true);
241
241
  },
@@ -250,7 +250,7 @@ var StateTreeNodeLabel = /** @class */ (function (_super) {
250
250
  var d = decoratorChain[i];
251
251
  decorators.push((0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: cell.parent, transform: d.transform, noMargin: true, wrapInExpander: true, expanderHeaderLeftMargin: margin }, "".concat(d.transform.transformer.id, "-").concat(i)));
252
252
  }
253
- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-tree-updates-wrapper' }, { children: decorators }), void 0);
253
+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-tree-updates-wrapper' }, { children: decorators }));
254
254
  };
255
255
  StateTreeNodeLabel.prototype.render = function () {
256
256
  var cell = this.props.cell;
@@ -262,31 +262,31 @@ var StateTreeNodeLabel = /** @class */ (function (_super) {
262
262
  var label;
263
263
  if (cell.status === 'error' || !cell.obj) {
264
264
  var name_1 = cell.status === 'error' ? cell.errorText : n.transformer.definition.display.name;
265
- label = (0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ className: 'msp-btn-tree-label msp-no-hover-outline', noOverflow: true, title: name_1, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent, disabled: disabled }, { children: [cell.status === 'error' && (0, jsx_runtime_1.jsxs)("b", { children: ["[", cell.status, "]"] }, void 0), " ", (0, jsx_runtime_1.jsx)("span", { children: name_1 }, void 0)] }), void 0);
265
+ label = (0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ className: 'msp-btn-tree-label msp-no-hover-outline', noOverflow: true, title: name_1, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent, disabled: disabled }, { children: [cell.status === 'error' && (0, jsx_runtime_1.jsxs)("b", { children: ["[", cell.status, "]"] }), " ", (0, jsx_runtime_1.jsx)("span", { children: name_1 })] }));
266
266
  }
267
267
  else {
268
268
  var obj = cell.obj;
269
269
  var title = "".concat(obj.label, " ").concat(obj.description ? obj.description : '');
270
- label = (0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ className: "msp-btn-tree-label msp-type-class-".concat(obj.type.typeClass), noOverflow: true, disabled: disabled, title: title, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent }, { children: [(0, jsx_runtime_1.jsx)("span", { children: obj.label }, void 0), " ", obj.description ? (0, jsx_runtime_1.jsx)("small", { children: obj.description }, void 0) : void 0] }), void 0);
270
+ label = (0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ className: "msp-btn-tree-label msp-type-class-".concat(obj.type.typeClass), noOverflow: true, disabled: disabled, title: title, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent }, { children: [(0, jsx_runtime_1.jsx)("span", { children: obj.label }), " ", obj.description ? (0, jsx_runtime_1.jsx)("small", { children: obj.description }) : void 0] }));
271
271
  }
272
272
  var children = cell.parent.tree.children.get(this.ref);
273
273
  var cellState = cell.state;
274
- var expand = (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cellState.isCollapsed ? icons_1.ArrowRightSvg : icons_1.ArrowDropDownSvg, flex: '20px', disabled: disabled, onClick: this.toggleExpanded, transparent: true, className: 'msp-no-hover-outline', style: { visibility: children.size > 0 ? 'visible' : 'hidden' } }, void 0);
275
- var remove = !cell.state.isLocked ? (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, onClick: this.remove, disabled: disabled, small: true, toggleState: false }, void 0) : void 0;
276
- var visibility = (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cellState.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, disabled: disabled, small: true, onClick: this.toggleVisible }, void 0);
274
+ var expand = (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cellState.isCollapsed ? icons_1.ArrowRightSvg : icons_1.ArrowDropDownSvg, flex: '20px', disabled: disabled, onClick: this.toggleExpanded, transparent: true, className: 'msp-no-hover-outline', style: { visibility: children.size > 0 ? 'visible' : 'hidden' } });
275
+ var remove = !cell.state.isLocked ? (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, onClick: this.remove, disabled: disabled, small: true, toggleState: false }) : void 0;
276
+ var visibility = (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cellState.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, disabled: disabled, small: true, onClick: this.toggleVisible });
277
277
  var marginStyle = {
278
278
  marginLeft: "".concat(this.props.depth * 8, "px")
279
279
  };
280
- var row = (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: "msp-flex-row msp-tree-row".concat(isCurrent ? ' msp-tree-row-current' : ''), onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: marginStyle }, { children: [expand, label, remove, visibility] }), void 0);
280
+ var row = (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: "msp-flex-row msp-tree-row".concat(isCurrent ? ' msp-tree-row-current' : ''), onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: marginStyle }, { children: [expand, label, remove, visibility] }));
281
281
  if (!isCurrent)
282
282
  return row;
283
283
  if (this.state.action === 'apply' && this.state.currentAction) {
284
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginBottom: '1px' } }, { children: [row, (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: "Apply ".concat(this.state.currentAction.definition.display.name), initialExpanded: true, hideExpander: true, hideOffset: false, onHeaderClick: this.hideApply, topRightIcon: icons_1.CloseSvg, headerLeftMargin: "".concat(this.props.depth * 8 + 21, "px") }, { children: (0, jsx_runtime_1.jsx)(apply_action_1.ApplyActionControl, { onApply: this.hideApply, state: this.props.cell.parent, action: this.state.currentAction, nodeRef: this.props.cell.transform.ref, hideHeader: true, noMargin: true }, void 0) }), void 0)] }), void 0);
284
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { marginBottom: '1px' } }, { children: [row, (0, jsx_runtime_1.jsx)(common_1.ControlGroup, tslib_1.__assign({ header: "Apply ".concat(this.state.currentAction.definition.display.name), initialExpanded: true, hideExpander: true, hideOffset: false, onHeaderClick: this.hideApply, topRightIcon: icons_1.CloseSvg, headerLeftMargin: "".concat(this.props.depth * 8 + 21, "px") }, { children: (0, jsx_runtime_1.jsx)(apply_action_1.ApplyActionControl, { onApply: this.hideApply, state: this.props.cell.parent, action: this.state.currentAction, nodeRef: this.props.cell.transform.ref, hideHeader: true, noMargin: true }) }))] }));
285
285
  }
286
286
  if (this.state.action === 'options') {
287
287
  var actions = this.actions;
288
288
  var updates = this.updates("".concat(this.props.depth * 8 + 21, "px"));
289
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { marginBottom: '1px' } }, { children: [row, updates, actions && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginLeft: "".concat(this.props.depth * 8 + 21, "px"), marginTop: '-1px' } }, { children: (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: actions, onSelect: this.selectAction }, void 0) }), void 0)] }), void 0);
289
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { marginBottom: '1px' } }, { children: [row, updates, actions && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginLeft: "".concat(this.props.depth * 8 + 21, "px"), marginTop: '-1px' } }, { children: (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: actions, onSelect: this.selectAction }) }))] }));
290
290
  }
291
291
  return row;
292
292
  };
@@ -7,7 +7,7 @@ var memoize_1 = require("../../mol-util/memoize");
7
7
  var common_1 = require("./common");
8
8
  var base_1 = require("../base");
9
9
  var UpdateTransformControl = /** @class */ (function (_super) {
10
- (0, tslib_1.__extends)(UpdateTransformControl, _super);
10
+ tslib_1.__extends(UpdateTransformControl, _super);
11
11
  function UpdateTransformControl() {
12
12
  var _this = _super !== null && _super.apply(this, arguments) || this;
13
13
  _this._getInfo = (0, memoize_1.memoizeLatest)(function (t) { return common_1.StateTransformParameters.infoFromTransform(_this.plugin, _this.props.state, t); });
@@ -87,7 +87,7 @@ var UpdateTransformControl = /** @class */ (function (_super) {
87
87
  }(common_1.TransformControlBase));
88
88
  exports.UpdateTransformControl = UpdateTransformControl;
89
89
  var TransformUpdaterControl = /** @class */ (function (_super) {
90
- (0, tslib_1.__extends)(TransformUpdaterControl, _super);
90
+ tslib_1.__extends(TransformUpdaterControl, _super);
91
91
  function TransformUpdaterControl() {
92
92
  return _super !== null && _super.apply(this, arguments) || this;
93
93
  }
@@ -107,7 +107,7 @@ var TransformUpdaterControl = /** @class */ (function (_super) {
107
107
  if (!cell || (cell.status !== 'ok' && cell.status !== 'error'))
108
108
  return null;
109
109
  var transform = cell.transform;
110
- return (0, jsx_runtime_1.jsx)(UpdateTransformControl, { state: state, transform: transform, initiallyCollapsed: this.props.initiallyCollapsed, customHeader: this.props.header }, void 0);
110
+ return (0, jsx_runtime_1.jsx)(UpdateTransformControl, { state: state, transform: transform, initiallyCollapsed: this.props.initiallyCollapsed, customHeader: this.props.header });
111
111
  };
112
112
  return TransformUpdaterControl;
113
113
  }(base_1.PluginUIComponent));
@@ -17,7 +17,7 @@ var parameters_1 = require("../controls/parameters");
17
17
  var update_transform_1 = require("../state/update-transform");
18
18
  var generic_1 = require("./generic");
19
19
  var StructureComponentControls = /** @class */ (function (_super) {
20
- (0, tslib_1.__extends)(StructureComponentControls, _super);
20
+ tslib_1.__extends(StructureComponentControls, _super);
21
21
  function StructureComponentControls() {
22
22
  return _super !== null && _super.apply(this, arguments) || this;
23
23
  }
@@ -36,13 +36,13 @@ var StructureComponentControls = /** @class */ (function (_super) {
36
36
  }); });
37
37
  };
38
38
  StructureComponentControls.prototype.renderControls = function () {
39
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ComponentEditorControls, {}, void 0), (0, jsx_runtime_1.jsx)(ComponentListControls, {}, void 0), (0, jsx_runtime_1.jsx)(generic_1.GenericEntryListControls, {}, void 0)] }, void 0);
39
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(ComponentEditorControls, {}), (0, jsx_runtime_1.jsx)(ComponentListControls, {}), (0, jsx_runtime_1.jsx)(generic_1.GenericEntryListControls, {})] });
40
40
  };
41
41
  return StructureComponentControls;
42
42
  }(base_1.CollapsableControls));
43
43
  exports.StructureComponentControls = StructureComponentControls;
44
44
  var ComponentEditorControls = /** @class */ (function (_super) {
45
- (0, tslib_1.__extends)(ComponentEditorControls, _super);
45
+ tslib_1.__extends(ComponentEditorControls, _super);
46
46
  function ComponentEditorControls() {
47
47
  var _this = _super !== null && _super.apply(this, arguments) || this;
48
48
  _this.state = {
@@ -99,7 +99,7 @@ var ComponentEditorControls = /** @class */ (function (_super) {
99
99
  };
100
100
  Object.defineProperty(ComponentEditorControls.prototype, "presetControls", {
101
101
  get: function () {
102
- return (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.presetActions, onSelect: this.applyPreset }, void 0);
102
+ return (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.presetActions, onSelect: this.applyPreset });
103
103
  },
104
104
  enumerable: false,
105
105
  configurable: true
@@ -117,12 +117,12 @@ var ComponentEditorControls = /** @class */ (function (_super) {
117
117
  var undoTitle = this.state.canUndo
118
118
  ? "Undo ".concat(this.plugin.state.data.latestUndoLabel)
119
119
  : 'Some mistakes of the past can be undone.';
120
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.BookmarksOutlinedSvg, label: 'Preset', title: 'Apply a representation preset for the current structure(s).', toggle: this.togglePreset, isSelected: this.state.action === 'preset', disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.AddSvg, label: 'Add', title: 'Add a new representation component for a selection.', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.TuneSvg, label: '', title: 'Options that are applied to all applicable representations.', style: { flex: '0 0 40px', padding: 0 }, toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.RestoreSvg, className: 'msp-flex-item', flex: '40px', onClick: this.undo, disabled: !this.state.canUndo || this.isDisabled, title: undoTitle }, void 0)] }), void 0), this.state.action === 'preset' && this.presetControls, this.state.action === 'add' && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(AddComponentControls, { onApply: this.hideAction }, void 0) }), void 0), this.state.action === 'options' && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(ComponentOptionsControls, { isDisabled: this.isDisabled }, void 0) }), void 0)] }, void 0);
120
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.BookmarksOutlinedSvg, label: 'Preset', title: 'Apply a representation preset for the current structure(s).', toggle: this.togglePreset, isSelected: this.state.action === 'preset', disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.AddSvg, label: 'Add', title: 'Add a new representation component for a selection.', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.TuneSvg, label: '', title: 'Options that are applied to all applicable representations.', style: { flex: '0 0 40px', padding: 0 }, toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.RestoreSvg, className: 'msp-flex-item', flex: '40px', onClick: this.undo, disabled: !this.state.canUndo || this.isDisabled, title: undoTitle })] })), this.state.action === 'preset' && this.presetControls, this.state.action === 'add' && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(AddComponentControls, { onApply: this.hideAction }) })), this.state.action === 'options' && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset' }, { children: (0, jsx_runtime_1.jsx)(ComponentOptionsControls, { isDisabled: this.isDisabled }) }))] });
121
121
  };
122
122
  return ComponentEditorControls;
123
123
  }(base_1.PurePluginUIComponent));
124
124
  var AddComponentControls = /** @class */ (function (_super) {
125
- (0, tslib_1.__extends)(AddComponentControls, _super);
125
+ tslib_1.__extends(AddComponentControls, _super);
126
126
  function AddComponentControls() {
127
127
  var _this = _super !== null && _super.apply(this, arguments) || this;
128
128
  _this.state = _this.createState();
@@ -153,13 +153,13 @@ var AddComponentControls = /** @class */ (function (_super) {
153
153
  configurable: true
154
154
  });
155
155
  AddComponentControls.prototype.render = function () {
156
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.state.params, values: this.state.values, onChangeValues: this.paramsChanged }, void 0), (0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ icon: icons_1.AddSvg, title: 'Use Selection and optional Representation to create a new Component.', className: 'msp-btn-commit msp-btn-commit-on', onClick: this.apply, style: { marginTop: '1px' } }, { children: "Create Component" }), void 0)] }, void 0);
156
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: this.state.params, values: this.state.values, onChangeValues: this.paramsChanged }), (0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ icon: icons_1.AddSvg, title: 'Use Selection and optional Representation to create a new Component.', className: 'msp-btn-commit msp-btn-commit-on', onClick: this.apply, style: { marginTop: '1px' } }, { children: "Create Component" }))] });
157
157
  };
158
158
  return AddComponentControls;
159
159
  }(base_1.PurePluginUIComponent));
160
160
  exports.AddComponentControls = AddComponentControls;
161
161
  var ComponentOptionsControls = /** @class */ (function (_super) {
162
- (0, tslib_1.__extends)(ComponentOptionsControls, _super);
162
+ tslib_1.__extends(ComponentOptionsControls, _super);
163
163
  function ComponentOptionsControls() {
164
164
  var _this = _super !== null && _super.apply(this, arguments) || this;
165
165
  _this.update = function (options) { return _this.plugin.managers.structure.component.setOptions(options); };
@@ -170,12 +170,12 @@ var ComponentOptionsControls = /** @class */ (function (_super) {
170
170
  this.subscribe(this.plugin.managers.structure.component.events.optionsUpdated, function () { return _this.forceUpdate(); });
171
171
  };
172
172
  ComponentOptionsControls.prototype.render = function () {
173
- return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: component_1.StructureComponentManager.OptionsParams, values: this.plugin.managers.structure.component.state.options, onChangeValues: this.update, isDisabled: this.props.isDisabled }, void 0);
173
+ return (0, jsx_runtime_1.jsx)(parameters_1.ParameterControls, { params: component_1.StructureComponentManager.OptionsParams, values: this.plugin.managers.structure.component.state.options, onChangeValues: this.update, isDisabled: this.props.isDisabled });
174
174
  };
175
175
  return ComponentOptionsControls;
176
176
  }(base_1.PurePluginUIComponent));
177
177
  var ComponentListControls = /** @class */ (function (_super) {
178
- (0, tslib_1.__extends)(ComponentListControls, _super);
178
+ tslib_1.__extends(ComponentListControls, _super);
179
179
  function ComponentListControls() {
180
180
  return _super !== null && _super.apply(this, arguments) || this;
181
181
  }
@@ -189,12 +189,12 @@ var ComponentListControls = /** @class */ (function (_super) {
189
189
  var componentGroups = this.plugin.managers.structure.hierarchy.currentComponentGroups;
190
190
  if (componentGroups.length === 0)
191
191
  return null;
192
- return (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginTop: '6px' } }, { children: componentGroups.map(function (g) { return (0, jsx_runtime_1.jsx)(StructureComponentGroup, { group: g }, g[0].cell.transform.ref); }) }), void 0);
192
+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginTop: '6px' } }, { children: componentGroups.map(function (g) { return (0, jsx_runtime_1.jsx)(StructureComponentGroup, { group: g }, g[0].cell.transform.ref); }) }));
193
193
  };
194
194
  return ComponentListControls;
195
195
  }(base_1.PurePluginUIComponent));
196
196
  var StructureComponentGroup = /** @class */ (function (_super) {
197
- (0, tslib_1.__extends)(StructureComponentGroup, _super);
197
+ tslib_1.__extends(StructureComponentGroup, _super);
198
198
  function StructureComponentGroup() {
199
199
  var _this = _super !== null && _super.apply(this, arguments) || this;
200
200
  _this.state = { action: void 0 };
@@ -281,13 +281,13 @@ var StructureComponentGroup = /** @class */ (function (_super) {
281
281
  var _this = this;
282
282
  var mng = this.plugin.managers.structure.component;
283
283
  var ret = [
284
- (0, tslib_1.__spreadArray)([
284
+ tslib_1.__spreadArray([
285
285
  action_menu_1.ActionMenu.Header('Add Representation')
286
286
  ], component_1.StructureComponentManager.getRepresentationTypes(this.plugin, this.props.group[0])
287
287
  .map(function (t) { return action_menu_1.ActionMenu.Item(t[1], function () { return mng.addRepresentation(_this.props.group, t[0]); }); }), true)
288
288
  ];
289
289
  if (this.pivot.representations.length > 0) {
290
- ret.push((0, tslib_1.__spreadArray)([
290
+ ret.push(tslib_1.__spreadArray([
291
291
  action_menu_1.ActionMenu.Header('Set Coloring', { isIndependent: true })
292
292
  ], this.colorByActions, true));
293
293
  }
@@ -329,12 +329,12 @@ var StructureComponentGroup = /** @class */ (function (_super) {
329
329
  var cell = component.cell;
330
330
  var label = (_a = cell.obj) === null || _a === void 0 ? void 0 : _a.label;
331
331
  var reprLabel = this.reprLabel;
332
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, className: 'msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, (0, jsx_runtime_1.jsx)("small", (0, tslib_1.__assign)({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: reprLabel }), void 0)] }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(cell.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, toggleState: false, onClick: this.remove, title: 'Remove', small: true, className: 'msp-form-control', flex: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, onClick: this.toggleAction, title: 'Actions', toggleState: this.state.action === 'action', className: 'msp-form-control', flex: true }, void 0)] }), void 0), this.state.action === 'label' && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-control-offset', style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlRow, { label: 'Label', control: (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ style: { display: 'flex', textAlignLast: 'center' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.TextInput, { onChange: this.updateLabel, value: label, style: { flex: '1 1 auto', minWidth: 0 }, className: 'msp-form-control', blurOnEnter: true, blurOnEscape: true }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CheckSvg, onClick: this.toggleLabel, className: 'msp-form-control msp-control-button-label', flex: true }, void 0)] }), void 0) }, void 0) }), void 0), this.state.action === 'action' && (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-accent-offset' }, { children: [(0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }, void 0) }), void 0), (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ style: { marginBottom: '6px' } }, { children: component.representations.map(function (r) { return (0, jsx_runtime_1.jsx)(StructureRepresentationEntry, { group: _this.props.group, representation: r }, r.cell.transform.ref); }) }), void 0)] }), void 0)] }, void 0);
332
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsxs)(common_1.Button, tslib_1.__assign({ noOverflow: true, className: 'msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, (0, jsx_runtime_1.jsx)("small", tslib_1.__assign({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: reprLabel }))] })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(cell.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, toggleState: false, onClick: this.remove, title: 'Remove', small: true, className: 'msp-form-control', flex: true }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.MoreHorizSvg, onClick: this.toggleAction, title: 'Actions', toggleState: this.state.action === 'action', className: 'msp-form-control', flex: true })] })), this.state.action === 'label' && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-control-offset', style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlRow, { label: 'Label', control: (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ style: { display: 'flex', textAlignLast: 'center' } }, { children: [(0, jsx_runtime_1.jsx)(common_1.TextInput, { onChange: this.updateLabel, value: label, style: { flex: '1 1 auto', minWidth: 0 }, className: 'msp-form-control', blurOnEnter: true, blurOnEscape: true }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CheckSvg, onClick: this.toggleLabel, className: 'msp-form-control msp-control-button-label', flex: true })] })) }) })), this.state.action === 'action' && (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-accent-offset' }, { children: [(0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginBottom: '6px' } }, { children: (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }) })), (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ style: { marginBottom: '6px' } }, { children: component.representations.map(function (r) { return (0, jsx_runtime_1.jsx)(StructureRepresentationEntry, { group: _this.props.group, representation: r }, r.cell.transform.ref); }) }))] }))] });
333
333
  };
334
334
  return StructureComponentGroup;
335
335
  }(base_1.PurePluginUIComponent));
336
336
  var StructureRepresentationEntry = /** @class */ (function (_super) {
337
- (0, tslib_1.__extends)(StructureRepresentationEntry, _super);
337
+ tslib_1.__extends(StructureRepresentationEntry, _super);
338
338
  function StructureRepresentationEntry() {
339
339
  var _this = _super !== null && _super.apply(this, arguments) || this;
340
340
  _this.remove = function () { return _this.plugin.managers.structure.component.removeRepresentations(_this.props.group, _this.props.representation); };
@@ -356,11 +356,11 @@ var StructureRepresentationEntry = /** @class */ (function (_super) {
356
356
  StructureRepresentationEntry.prototype.render = function () {
357
357
  var _a;
358
358
  var repr = this.props.representation.cell;
359
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-representation-entry' }, { children: [repr.parent && (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, (0, tslib_1.__assign)({ header: "".concat(((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) || '', " Representation"), noOffset: true }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', customUpdate: this.update, noMargin: true }, void 0) }), void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true, className: 'msp-default-bg', toggleState: false, style: {
359
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-representation-entry' }, { children: [repr.parent && (0, jsx_runtime_1.jsx)(common_1.ExpandGroup, tslib_1.__assign({ header: "".concat(((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) || '', " Representation"), noOffset: true }, { children: (0, jsx_runtime_1.jsx)(update_transform_1.UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', customUpdate: this.update, noMargin: true }) })), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true, className: 'msp-default-bg', toggleState: false, style: {
360
360
  position: 'absolute', top: 0, right: '32px', lineHeight: '24px', height: '24px', textAlign: 'right', width: '44px', paddingRight: '6px', background: 'none'
361
- } }, void 0), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: this.props.representation.cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: 'Toggle Visibility', small: true, className: 'msp-default-bg', style: {
361
+ } }), (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: this.props.representation.cell.state.isHidden ? icons_1.VisibilityOffOutlinedSvg : icons_1.VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: 'Toggle Visibility', small: true, className: 'msp-default-bg', style: {
362
362
  position: 'absolute', top: 0, right: 0, lineHeight: '24px', height: '24px', textAlign: 'right', width: '32px', paddingRight: '6px', background: 'none'
363
- } }, void 0)] }), void 0);
363
+ } })] }));
364
364
  };
365
365
  return StructureRepresentationEntry;
366
366
  }(base_1.PurePluginUIComponent));
@@ -92,7 +92,7 @@ function getFocusEntries(structure) {
92
92
  return entries;
93
93
  }
94
94
  var StructureFocusControls = /** @class */ (function (_super) {
95
- (0, tslib_1.__extends)(StructureFocusControls, _super);
95
+ tslib_1.__extends(StructureFocusControls, _super);
96
96
  function StructureFocusControls() {
97
97
  var _this = _super !== null && _super.apply(this, arguments) || this;
98
98
  _this.state = { isBusy: false, showAction: false };
@@ -105,7 +105,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
105
105
  if (d) {
106
106
  var entries = getFocusEntries(d);
107
107
  if (entries.length > 0) {
108
- presetItems.push((0, tslib_1.__spreadArray)([
108
+ presetItems.push(tslib_1.__spreadArray([
109
109
  action_menu_1.ActionMenu.Header(d.label, { description: d.label })
110
110
  ], action_menu_1.ActionMenu.createItems(entries, {
111
111
  label: function (f) { return f.label; },
@@ -177,7 +177,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
177
177
  var historyItems = [];
178
178
  var history = this.plugin.managers.structure.focus.history;
179
179
  if (history.length > 0) {
180
- historyItems.push((0, tslib_1.__spreadArray)([
180
+ historyItems.push(tslib_1.__spreadArray([
181
181
  action_menu_1.ActionMenu.Header('History', { description: 'Previously focused on items.' })
182
182
  ], action_menu_1.ActionMenu.createItems(history, {
183
183
  label: function (f) { return f.label; },
@@ -225,7 +225,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
225
225
  title += "\nor use '".concat(binding, "' on element");
226
226
  }
227
227
  }
228
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, (0, tslib_1.__assign)({ noOverflow: true, onClick: this.focusCamera, title: title, onMouseEnter: this.highlightCurrent, onMouseLeave: this.clearHighlights, disabled: this.isDisabled || !current, style: { textAlignLast: current ? 'left' : void 0 } }, { children: label }), void 0), current && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CancelOutlinedSvg, onClick: this.clear, title: 'Clear', className: 'msp-form-control', flex: true, disabled: this.isDisabled }, void 0), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CenterFocusStrongSvg, title: 'Select a focus target to center on an show its surroundings. Hold shift to focus on multiple targets.', toggle: this.toggleAction, isSelected: this.state.showAction, disabled: this.isDisabled, style: { flex: '0 0 40px', padding: 0 } }, void 0)] }), void 0), this.state.showAction && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actionItems, onSelect: this.selectAction }, void 0)] }, void 0);
228
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-flex-row' }, { children: [(0, jsx_runtime_1.jsx)(common_1.Button, tslib_1.__assign({ noOverflow: true, onClick: this.focusCamera, title: title, onMouseEnter: this.highlightCurrent, onMouseLeave: this.clearHighlights, disabled: this.isDisabled || !current, style: { textAlignLast: current ? 'left' : void 0 } }, { children: label })), current && (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icons_1.CancelOutlinedSvg, onClick: this.clear, title: 'Clear', className: 'msp-form-control', flex: true, disabled: this.isDisabled }), (0, jsx_runtime_1.jsx)(common_1.ToggleButton, { icon: icons_1.CenterFocusStrongSvg, title: 'Select a focus target to center on an show its surroundings. Hold shift to focus on multiple targets.', toggle: this.toggleAction, isSelected: this.state.showAction, disabled: this.isDisabled, style: { flex: '0 0 40px', padding: 0 } })] })), this.state.showAction && (0, jsx_runtime_1.jsx)(action_menu_1.ActionMenu, { items: this.actionItems, onSelect: this.selectAction })] });
229
229
  };
230
230
  return StructureFocusControls;
231
231
  }(base_1.PluginUIComponent));