molstar 3.3.0 → 3.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (905) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/docking-viewer/viewport.js +1 -1
  8. package/lib/apps/viewer/app.d.ts +7 -6
  9. package/lib/apps/viewer/app.js +2 -0
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.html +106 -106
  12. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  13. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  14. package/lib/cli/cif2bcif/converter.js +1 -1
  15. package/lib/cli/cif2bcif/index.js +4 -4
  16. package/lib/commonjs/apps/docking-viewer/index.js +12 -12
  17. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  18. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  19. package/lib/commonjs/apps/viewer/app.js +24 -22
  20. package/lib/commonjs/apps/viewer/index.js +1 -1
  21. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  22. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  23. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  24. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  25. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  26. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  27. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  28. package/lib/commonjs/cli/cifschema/index.js +27 -27
  29. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -1
  30. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  31. package/lib/commonjs/cli/state-docs/index.js +2 -2
  32. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  33. package/lib/commonjs/cli/structure-info/model.js +15 -15
  34. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  35. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  36. package/lib/commonjs/examples/alpha-orbitals/index.js +11 -11
  37. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  38. package/lib/commonjs/examples/basic-wrapper/index.js +22 -22
  39. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  40. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  41. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  42. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  43. package/lib/commonjs/examples/lighting/index.js +6 -6
  44. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  45. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  46. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -26
  47. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  48. package/lib/commonjs/examples/task.js +15 -15
  49. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  50. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  51. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  52. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  53. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  54. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  55. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  56. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  57. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  58. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  59. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  60. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  61. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  62. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  63. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  64. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  65. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  66. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  67. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  68. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  69. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  70. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  71. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  72. package/lib/commonjs/extensions/g3d/data.js +6 -6
  73. package/lib/commonjs/extensions/g3d/format.js +14 -14
  74. package/lib/commonjs/extensions/g3d/model.js +4 -4
  75. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  76. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  77. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  78. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  79. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  80. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  81. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  82. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  83. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  84. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  85. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  86. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  87. package/lib/commonjs/extensions/model-export/export.js +4 -4
  88. package/lib/commonjs/extensions/model-export/index.js +1 -1
  89. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  90. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  91. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  92. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  93. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  94. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  95. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  96. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  97. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  98. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  99. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  100. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  101. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  102. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  103. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  104. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  105. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +22 -5
  106. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  107. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  108. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  109. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  110. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  111. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  112. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  113. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  114. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  115. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  116. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  117. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  118. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  119. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  120. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  121. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  122. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  123. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  124. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  125. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  126. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  127. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  128. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  129. package/lib/commonjs/mol-data/db/column.js +2 -2
  130. package/lib/commonjs/mol-data/db/table.js +1 -1
  131. package/lib/commonjs/mol-data/db.js +1 -1
  132. package/lib/commonjs/mol-data/generic.js +3 -3
  133. package/lib/commonjs/mol-data/index.js +4 -4
  134. package/lib/commonjs/mol-data/int/interval.js +1 -1
  135. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  136. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  137. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  138. package/lib/commonjs/mol-data/util.js +7 -7
  139. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  140. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -3
  141. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  142. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  143. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  144. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  145. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  146. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  147. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  148. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -3
  149. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  150. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  151. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  152. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -3
  153. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  154. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  155. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  156. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  157. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  158. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -3
  159. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  160. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  161. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  162. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  163. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  164. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  165. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  166. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  167. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  168. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  169. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  170. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  171. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  172. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  173. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  174. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  175. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  176. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  177. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  178. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  179. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  180. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  182. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  183. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  184. package/lib/commonjs/mol-gl/webgl/buffer.js +4 -5
  185. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  186. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  187. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  188. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  189. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  190. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  191. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  192. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  193. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  194. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  195. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  196. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  197. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  198. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  199. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  200. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  201. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  202. package/lib/commonjs/mol-io/reader/cif/schema.js +2 -2
  203. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  204. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  205. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  206. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  207. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  208. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  209. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  210. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  211. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  212. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  213. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  214. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  215. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  216. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  217. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  218. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  219. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  220. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  221. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  222. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  223. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  224. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  225. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  226. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  227. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  228. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  229. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  230. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  231. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  232. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  233. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  234. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  235. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  236. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  237. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  238. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
  239. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +6 -6
  240. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
  241. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +8 -8
  242. package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +2 -2
  243. package/lib/commonjs/mol-math/geometry/gaussian-density.js +5 -5
  244. package/lib/commonjs/mol-math/geometry/molecular-surface.d.ts +2 -1
  245. package/lib/commonjs/mol-math/geometry/molecular-surface.js +10 -10
  246. package/lib/commonjs/mol-math/geometry/primitives/box3d.js +2 -1
  247. package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +13 -7
  248. package/lib/commonjs/mol-math/geometry.js +8 -8
  249. package/lib/commonjs/mol-math/graph/inter-unit-graph.js +1 -1
  250. package/lib/commonjs/mol-math/graph.js +1 -1
  251. package/lib/commonjs/mol-math/linear-algebra.js +2 -2
  252. package/lib/commonjs/mol-model/sequence/alignment/alignment.js +1 -1
  253. package/lib/commonjs/mol-model/sequence/sequence.js +2 -1
  254. package/lib/commonjs/mol-model/sequence.js +1 -1
  255. package/lib/commonjs/mol-model/shape.js +1 -1
  256. package/lib/commonjs/mol-model/structure/coordinates.js +1 -1
  257. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  258. package/lib/commonjs/mol-model/structure/model/model.js +3 -3
  259. package/lib/commonjs/mol-model/structure/model/properties/atomic.js +3 -3
  260. package/lib/commonjs/mol-model/structure/model/properties/coarse.js +2 -2
  261. package/lib/commonjs/mol-model/structure/model/types/saccharides.d.ts +8 -0
  262. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +11 -0
  263. package/lib/commonjs/mol-model/structure/model.js +3 -3
  264. package/lib/commonjs/mol-model/structure/query/queries/generators.js +2 -2
  265. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +2 -2
  266. package/lib/commonjs/mol-model/structure/query.js +6 -6
  267. package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
  268. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +1 -1
  269. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +6 -9
  270. package/lib/commonjs/mol-model/structure/structure/element/element.js +5 -5
  271. package/lib/commonjs/mol-model/structure/structure/element.js +1 -1
  272. package/lib/commonjs/mol-model/structure/structure/structure.js +9 -6
  273. package/lib/commonjs/mol-model/structure/structure/symmetry.js +10 -10
  274. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +2 -2
  275. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -0
  276. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +6 -4
  277. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  278. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +3 -3
  279. package/lib/commonjs/mol-model/structure/structure/unit.js +5 -22
  280. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +1 -1
  281. package/lib/commonjs/mol-model/structure/structure.js +2 -2
  282. package/lib/commonjs/mol-model/structure/topology.js +1 -1
  283. package/lib/commonjs/mol-model/structure.js +6 -6
  284. package/lib/commonjs/mol-model/volume.js +2 -2
  285. package/lib/commonjs/mol-model-formats/shape/ply.js +7 -7
  286. package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +1 -1
  287. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -15
  288. package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +3 -3
  289. package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
  290. package/lib/commonjs/mol-model-formats/structure/basic/parser.d.ts +1 -1
  291. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +10 -10
  292. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
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  872. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.js +10 -1
  873. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +10 -1
  874. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -1
  875. package/lib/mol-repr/structure/visual/element-point.js +22 -3
  876. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
  877. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +1 -1
  878. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +10 -10
  879. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  880. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
  881. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -4
  882. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  883. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +5 -5
  884. package/lib/mol-repr/structure/visual/util/common.d.ts +1 -3
  885. package/lib/mol-repr/structure/visual/util/common.js +1 -24
  886. package/lib/mol-repr/structure/visual/util/element.js +36 -2
  887. package/lib/mol-repr/structure/visual/util/link.d.ts +13 -3
  888. package/lib/mol-repr/structure/visual/util/link.js +55 -6
  889. package/lib/mol-script/language/builder.d.ts +1 -0
  890. package/lib/mol-script/language/parser.js +7 -4
  891. package/lib/mol-task/util/scheduler.d.ts +2 -2
  892. package/lib/mol-task/util/scheduler.js +7 -7
  893. package/lib/mol-theme/color/hydrophobicity.js +2 -2
  894. package/lib/mol-util/data-source.js +2 -1
  895. package/lib/mol-util/file-info.d.ts +1 -3
  896. package/lib/mol-util/file-info.js +2 -10
  897. package/lib/mol-util/index.d.ts +1 -0
  898. package/lib/mol-util/index.js +5 -0
  899. package/lib/mol-util/zip/deflate.js +2 -1
  900. package/lib/mol-util/zip/zip.d.ts +7 -1
  901. package/lib/mol-util/zip/zip.js +5 -1
  902. package/lib/servers/model/config.d.ts +2 -2
  903. package/package.json +160 -160
  904. package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -64
  905. package/lib/mol-plugin-state/formats/structure.js +0 -61
@@ -1,24 +1,24 @@
1
- $default-background: #2D3E50;
2
- $font-color: #EDF1F2;
3
- $hover-font-color: #3B9AD9;
4
- $entity-current-font-color: #FFFFFF;
5
- $msp-btn-remove-background: #BF3A31;
6
- $msp-btn-remove-hover-font-color:#ffffff;
7
- $msp-btn-commit-on-font-color: #ffffff;
8
- $entity-badge-font-color: #ccd4e0;
9
-
10
- // used in LOG
11
- $log-message: #0CCA5D;
12
- $log-info: #5E3673;
13
- $log-warning: #FCC937;
14
- $log-error: #FD354B;
15
-
16
- $logo-background: rgba(0,0,0,0.75);
17
-
18
- @function color-lower-contrast($color, $amount) {
19
- @return darken($color, $amount);
20
- }
21
-
22
- @function color-increase-contrast($color, $amount) {
23
- @return lighten($color, $amount);
1
+ $default-background: #2D3E50;
2
+ $font-color: #EDF1F2;
3
+ $hover-font-color: #3B9AD9;
4
+ $entity-current-font-color: #FFFFFF;
5
+ $msp-btn-remove-background: #BF3A31;
6
+ $msp-btn-remove-hover-font-color:#ffffff;
7
+ $msp-btn-commit-on-font-color: #ffffff;
8
+ $entity-badge-font-color: #ccd4e0;
9
+
10
+ // used in LOG
11
+ $log-message: #0CCA5D;
12
+ $log-info: #5E3673;
13
+ $log-warning: #FCC937;
14
+ $log-error: #FD354B;
15
+
16
+ $logo-background: rgba(0,0,0,0.75);
17
+
18
+ @function color-lower-contrast($color, $amount) {
19
+ @return darken($color, $amount);
20
+ }
21
+
22
+ @function color-increase-contrast($color, $amount) {
23
+ @return lighten($color, $amount);
24
24
  }
@@ -1,24 +1,24 @@
1
- $default-background: #111318;
2
- $font-color: #ccd4e0;
3
- $hover-font-color: #51A2FB;
4
- $entity-current-font-color: #68BEFD;
5
- $msp-btn-remove-background: #DE0A28;
6
- $msp-btn-remove-hover-font-color:#F2F4F7;
7
- $msp-btn-commit-on-font-color: #68BEFD;
8
- $entity-badge-font-color: #ccd4e0;
9
-
10
- // used in LOG
11
- $log-message: #0CCA5D;
12
- $log-info: #5E3673;
13
- $log-warning: #FCC937;
14
- $log-error: #FD354B;
15
-
16
- $logo-background: rgba(0,0,0,0.75);
17
-
18
- @function color-lower-contrast($color, $amount) {
19
- @return darken($color, $amount);
20
- }
21
-
22
- @function color-increase-contrast($color, $amount) {
23
- @return lighten($color, $amount);
1
+ $default-background: #111318;
2
+ $font-color: #ccd4e0;
3
+ $hover-font-color: #51A2FB;
4
+ $entity-current-font-color: #68BEFD;
5
+ $msp-btn-remove-background: #DE0A28;
6
+ $msp-btn-remove-hover-font-color:#F2F4F7;
7
+ $msp-btn-commit-on-font-color: #68BEFD;
8
+ $entity-badge-font-color: #ccd4e0;
9
+
10
+ // used in LOG
11
+ $log-message: #0CCA5D;
12
+ $log-info: #5E3673;
13
+ $log-warning: #FCC937;
14
+ $log-error: #FD354B;
15
+
16
+ $logo-background: rgba(0,0,0,0.75);
17
+
18
+ @function color-lower-contrast($color, $amount) {
19
+ @return darken($color, $amount);
20
+ }
21
+
22
+ @function color-increase-contrast($color, $amount) {
23
+ @return lighten($color, $amount);
24
24
  }
@@ -1,30 +1,30 @@
1
- // this is complement of the dark theme
2
-
3
- @function compl($color) {
4
- @return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
5
- }
6
-
7
- $default-background: compl(#111318);
8
- $font-color: compl(#ccd4e0);
9
- $hover-font-color: compl(#51A2FB);
10
- $entity-current-font-color: compl(#68BEFD);
11
- $msp-btn-commit-on-font-color: compl(#68BEFD);
12
- $entity-badge-font-color: lighten(#ccd4e0,10%);
13
- $msp-btn-remove-background: #DE0A28;
14
- $msp-btn-remove-hover-font-color:#F2F4F7;
15
-
16
- // used in LOG
17
- $log-message: #0CCA5D;
18
- $log-info: #5E3673;
19
- $log-warning: #FCC937;
20
- $log-error: #FD354B;
21
-
22
- $logo-background: compl(#111318);
23
-
24
- @function color-lower-contrast($color, $amount) {
25
- @return lighten($color, $amount);
26
- }
27
-
28
- @function color-increase-contrast($color, $amount) {
29
- @return darken($color, $amount);
1
+ // this is complement of the dark theme
2
+
3
+ @function compl($color) {
4
+ @return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
5
+ }
6
+
7
+ $default-background: compl(#111318);
8
+ $font-color: compl(#ccd4e0);
9
+ $hover-font-color: compl(#51A2FB);
10
+ $entity-current-font-color: compl(#68BEFD);
11
+ $msp-btn-commit-on-font-color: compl(#68BEFD);
12
+ $entity-badge-font-color: lighten(#ccd4e0,10%);
13
+ $msp-btn-remove-background: #DE0A28;
14
+ $msp-btn-remove-hover-font-color:#F2F4F7;
15
+
16
+ // used in LOG
17
+ $log-message: #0CCA5D;
18
+ $log-info: #5E3673;
19
+ $log-warning: #FCC937;
20
+ $log-error: #FD354B;
21
+
22
+ $logo-background: compl(#111318);
23
+
24
+ @function color-lower-contrast($color, $amount) {
25
+ @return lighten($color, $amount);
26
+ }
27
+
28
+ @function color-increase-contrast($color, $amount) {
29
+ @return darken($color, $amount);
30
30
  }
@@ -1,2 +1,2 @@
1
- @import 'colors/dark';
1
+ @import 'colors/dark';
2
2
  @import 'base/base';
@@ -1,2 +1,2 @@
1
- @import 'colors/light';
1
+ @import 'colors/light';
2
2
  @import 'base/base';
@@ -40,7 +40,7 @@ var StateObjectActions = /** @class */ (function (_super) {
40
40
  return null;
41
41
  var def = cell.transform.transformer.definition;
42
42
  var display = cell.obj ? cell.obj.label : (def.display && def.display.name) || def.name;
43
- return _jsxs("div", __assign({ className: 'msp-state-actions' }, { children: [!this.props.hideHeader && _jsxs("div", __assign({ className: 'msp-section-header' }, { children: [_jsx(Icon, { svg: CodeSvg }, void 0), " ", "Actions (".concat(display, ")")] }), void 0), actions.map(function (act, i) { return _jsx(ApplyActionControl, { state: state, action: act, nodeRef: ref, initiallyCollapsed: i === 0 ? !_this.props.alwaysExpandFirst && _this.props.initiallyCollapsed : _this.props.initiallyCollapsed }, "".concat(act.id)); })] }), void 0);
43
+ return _jsxs("div", __assign({ className: 'msp-state-actions' }, { children: [!this.props.hideHeader && _jsxs("div", __assign({ className: 'msp-section-header' }, { children: [_jsx(Icon, { svg: CodeSvg }), " ", "Actions (".concat(display, ")")] })), actions.map(function (act, i) { return _jsx(ApplyActionControl, { state: state, action: act, nodeRef: ref, initiallyCollapsed: i === 0 ? !_this.props.alwaysExpandFirst && _this.props.initiallyCollapsed : _this.props.initiallyCollapsed }, "".concat(act.id)); })] }));
44
44
  };
45
45
  return StateObjectActions;
46
46
  }(PluginUIComponent));
@@ -44,7 +44,7 @@ var AnimationControls = /** @class */ (function (_super) {
44
44
  return null;
45
45
  var isDisabled = anim.state.animationState === 'playing';
46
46
  var canApply = (_b = (_a = anim.current.anim).canApply) === null || _b === void 0 ? void 0 : _b.call(_a, this.plugin);
47
- return _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: anim.getParams(), values: anim.state.params, onChange: this.updateParams, isDisabled: isDisabled }, void 0), _jsx(ParameterControls, { params: anim.current.params, values: anim.current.paramValues, onChange: this.updateCurrentParams, isDisabled: isDisabled }, void 0), _jsx("div", __assign({ className: 'msp-flex-row' }, { children: _jsx(Button, __assign({ icon: anim.state.animationState !== 'playing' ? void 0 : PlayArrowSvg, onClick: this.startOrStop, disabled: canApply !== void 0 && canApply.canApply === false }, { children: anim.state.animationState === 'playing' ? 'Stop' : canApply === void 0 || canApply.canApply ? 'Start' : canApply.reason || 'Start' }), void 0) }), void 0)] }, void 0);
47
+ return _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: anim.getParams(), values: anim.state.params, onChange: this.updateParams, isDisabled: isDisabled }), _jsx(ParameterControls, { params: anim.current.params, values: anim.current.paramValues, onChange: this.updateCurrentParams, isDisabled: isDisabled }), _jsx("div", __assign({ className: 'msp-flex-row' }, { children: _jsx(Button, __assign({ icon: anim.state.animationState !== 'playing' ? void 0 : PlayArrowSvg, onClick: this.startOrStop, disabled: canApply !== void 0 && canApply.canApply === false }, { children: anim.state.animationState === 'playing' ? 'Stop' : canApply === void 0 || canApply.canApply ? 'Start' : canApply.reason || 'Start' })) }))] });
48
48
  };
49
49
  return AnimationControls;
50
50
  }(PluginUIComponent));
@@ -27,7 +27,7 @@ var StateTransformParameters = /** @class */ (function (_super) {
27
27
  return PD.areEqual(this.props.info.params, params, this.props.info.initialValues);
28
28
  };
29
29
  StateTransformParameters.prototype.render = function () {
30
- return _jsx(ParameterControls, { params: this.props.info.params, values: this.props.params, onChange: this.onChange, onEnter: this.props.events.onEnter, isDisabled: this.props.isDisabled }, void 0);
30
+ return _jsx(ParameterControls, { params: this.props.info.params, values: this.props.params, onChange: this.onChange, onEnter: this.props.events.onEnter, isDisabled: this.props.isDisabled });
31
31
  };
32
32
  return StateTransformParameters;
33
33
  }(PurePluginUIComponent));
@@ -151,7 +151,7 @@ var TransformControlBase = /** @class */ (function (_super) {
151
151
  var canApply = this.canApply();
152
152
  if (this.props.autoHideApply && (!canApply || this.canAutoApply(this.state.params)))
153
153
  return null;
154
- return _jsxs("div", __assign({ className: 'msp-transform-apply-wrap' }, { children: [_jsx(IconButton, { svg: RefreshSvg, className: 'msp-transform-default-params', onClick: this.setDefault, disabled: this.state.busy, title: 'Set default params' }, void 0), _jsx("div", __assign({ className: "msp-transform-apply-wider" }, { children: _jsx(Button, __assign({ icon: canApply ? CheckSvg : void 0, className: "msp-btn-commit msp-btn-commit-".concat(canApply ? 'on' : 'off'), onClick: this.apply, disabled: !canApply }, { children: this.props.applyLabel || this.applyText() }), void 0) }), void 0)] }), void 0);
154
+ return _jsxs("div", __assign({ className: 'msp-transform-apply-wrap' }, { children: [_jsx(IconButton, { svg: RefreshSvg, className: 'msp-transform-default-params', onClick: this.setDefault, disabled: this.state.busy, title: 'Set default params' }), _jsx("div", __assign({ className: "msp-transform-apply-wider" }, { children: _jsx(Button, __assign({ icon: canApply ? CheckSvg : void 0, className: "msp-btn-commit msp-btn-commit-".concat(canApply ? 'on' : 'off'), onClick: this.apply, disabled: !canApply }, { children: this.props.applyLabel || this.applyText() })) }))] }));
155
155
  };
156
156
  TransformControlBase.prototype.renderDefault = function () {
157
157
  var info = this.getInfo();
@@ -168,18 +168,18 @@ var TransformControlBase = /** @class */ (function (_super) {
168
168
  if (!isEmpty && !this.state.isCollapsed) {
169
169
  var _a = this.getSourceAndTarget(), a = _a.a, b = _a.b, bCell = _a.bCell;
170
170
  var applyControl = this.renderApply();
171
- params = _jsxs(_Fragment, { children: [_jsx(ParamEditor, { info: info, a: a, b: b, bCell: bCell, events: this.events, params: this.state.params, isDisabled: this.state.busy }, void 0), applyControl] }, void 0);
171
+ params = _jsxs(_Fragment, { children: [_jsx(ParamEditor, { info: info, a: a, b: b, bCell: bCell, events: this.events, params: this.state.params, isDisabled: this.state.busy }), applyControl] });
172
172
  }
173
- var ctrl = _jsxs("div", __assign({ className: wrapClass, style: { marginBottom: this.props.noMargin ? 0 : void 0 } }, { children: [display !== 'none' && !this.props.wrapInExpander && _jsx("div", __assign({ className: 'msp-transform-header' }, { children: _jsxs(Button, __assign({ onClick: this.toggleExpanded, title: display.description }, { children: [!isEmpty && _jsx(Icon, { svg: this.state.isCollapsed ? ArrowRightSvg : ArrowDropDownSvg }, void 0), display.name] }), void 0) }), void 0), params] }), void 0);
173
+ var ctrl = _jsxs("div", __assign({ className: wrapClass, style: { marginBottom: this.props.noMargin ? 0 : void 0 } }, { children: [display !== 'none' && !this.props.wrapInExpander && _jsx("div", __assign({ className: 'msp-transform-header' }, { children: _jsxs(Button, __assign({ onClick: this.toggleExpanded, title: display.description }, { children: [!isEmpty && _jsx(Icon, { svg: this.state.isCollapsed ? ArrowRightSvg : ArrowDropDownSvg }), display.name] })) })), params] }));
174
174
  if (isEmpty || !this.props.wrapInExpander)
175
175
  return ctrl;
176
- return _jsx(ExpandGroup, __assign({ header: this.isUpdate() ? "Update ".concat(display === 'none' ? '' : display.name) : "Apply ".concat(display === 'none' ? '' : display.name), headerLeftMargin: this.props.expanderHeaderLeftMargin }, { children: ctrl }), void 0);
176
+ return _jsx(ExpandGroup, __assign({ header: this.isUpdate() ? "Update ".concat(display === 'none' ? '' : display.name) : "Apply ".concat(display === 'none' ? '' : display.name), headerLeftMargin: this.props.expanderHeaderLeftMargin }, { children: ctrl }));
177
177
  };
178
178
  TransformControlBase.prototype.renderSimple = function () {
179
179
  var _a, _b, _c;
180
180
  var info = this.getInfo();
181
181
  var canApply = this.canApply();
182
- var apply = _jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(Button, __assign({ icon: (_a = this.props.simpleApply) === null || _a === void 0 ? void 0 : _a.icon, title: (_b = this.props.simpleApply) === null || _b === void 0 ? void 0 : _b.title, disabled: this.state.busy || !canApply, onClick: this.apply, className: 'msp-btn-apply-simple' }, { children: (_c = this.props.simpleApply) === null || _c === void 0 ? void 0 : _c.header }), void 0), !info.isEmpty && _jsx(ToggleButton, { icon: TuneSvg, label: '', title: 'Options', toggle: this.toggleExpanded, isSelected: !this.state.isCollapsed, disabled: this.state.busy, style: { flex: '0 0 40px', padding: 0 } }, void 0)] }), void 0);
182
+ var apply = _jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(Button, __assign({ icon: (_a = this.props.simpleApply) === null || _a === void 0 ? void 0 : _a.icon, title: (_b = this.props.simpleApply) === null || _b === void 0 ? void 0 : _b.title, disabled: this.state.busy || !canApply, onClick: this.apply, className: 'msp-btn-apply-simple' }, { children: (_c = this.props.simpleApply) === null || _c === void 0 ? void 0 : _c.header })), !info.isEmpty && _jsx(ToggleButton, { icon: TuneSvg, label: '', title: 'Options', toggle: this.toggleExpanded, isSelected: !this.state.isCollapsed, disabled: this.state.busy, style: { flex: '0 0 40px', padding: 0 } })] }));
183
183
  if (this.state.isCollapsed)
184
184
  return apply;
185
185
  var tId = this.getTransformerId();
@@ -187,7 +187,7 @@ var TransformControlBase = /** @class */ (function (_super) {
187
187
  ? this.plugin.customParamEditors.get(tId)
188
188
  : StateTransformParameters;
189
189
  var _d = this.getSourceAndTarget(), a = _d.a, b = _d.b, bCell = _d.bCell;
190
- return _jsxs(_Fragment, { children: [apply, _jsx(ParamEditor, { info: info, a: a, b: b, bCell: bCell, events: this.events, params: this.state.params, isDisabled: this.state.busy }, void 0)] }, void 0);
190
+ return _jsxs(_Fragment, { children: [apply, _jsx(ParamEditor, { info: info, a: a, b: b, bCell: bCell, events: this.events, params: this.state.params, isDisabled: this.state.busy })] });
191
191
  };
192
192
  TransformControlBase.prototype.render = function () {
193
193
  // console.log('rendering', ((this.props as any)?.transform?.transformer || (this.props as any)?.action)?.definition.display.name, +new Date)
@@ -24,7 +24,7 @@ var StateSnapshots = /** @class */ (function (_super) {
24
24
  }
25
25
  StateSnapshots.prototype.render = function () {
26
26
  var _a;
27
- return _jsxs("div", { children: [_jsx(SectionHeader, { icon: SaveOutlinedSvg, title: 'Plugin State' }, void 0), _jsx("div", __assign({ style: { marginBottom: '10px' } }, { children: _jsx(ExpandGroup, __assign({ header: 'Save Options', initiallyExpanded: false }, { children: _jsx(LocalStateSnapshotParams, {}, void 0) }), void 0) }), void 0), _jsx(LocalStateSnapshots, {}, void 0), _jsx(LocalStateSnapshotList, {}, void 0), _jsx(SectionHeader, { title: 'Save as File', accent: 'blue' }, void 0), _jsx(StateExportImportControls, {}, void 0), ((_a = this.plugin.spec.components) === null || _a === void 0 ? void 0 : _a.remoteState) !== 'none' && _jsx(RemoteStateSnapshots, {}, void 0)] }, void 0);
27
+ return _jsxs("div", { children: [_jsx(SectionHeader, { icon: SaveOutlinedSvg, title: 'Plugin State' }), _jsx("div", __assign({ style: { marginBottom: '10px' } }, { children: _jsx(ExpandGroup, __assign({ header: 'Save Options', initiallyExpanded: false }, { children: _jsx(LocalStateSnapshotParams, {}) })) })), _jsx(LocalStateSnapshots, {}), _jsx(LocalStateSnapshotList, {}), _jsx(SectionHeader, { title: 'Save as File', accent: 'blue' }), _jsx(StateExportImportControls, {}), ((_a = this.plugin.spec.components) === null || _a === void 0 ? void 0 : _a.remoteState) !== 'none' && _jsx(RemoteStateSnapshots, {})] });
28
28
  };
29
29
  return StateSnapshots;
30
30
  }(PluginUIComponent));
@@ -55,7 +55,7 @@ var StateExportImportControls = /** @class */ (function (_super) {
55
55
  return _this;
56
56
  }
57
57
  StateExportImportControls.prototype.render = function () {
58
- return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(Button, __assign({ icon: GetAppSvg, onClick: this.downloadToFileJson, title: 'Save the state description. Input data are loaded using the provided sources. Does not work if local files are used as input.' }, { children: "State" }), void 0), _jsx(Button, __assign({ icon: GetAppSvg, onClick: this.downloadToFileZip, title: 'Save the state including the input data.' }, { children: "Session" }), void 0), _jsxs("div", __assign({ className: 'msp-btn msp-btn-block msp-btn-action msp-loader-msp-btn-file' }, { children: [_jsx(Icon, { svg: OpenInBrowserSvg, inline: true }, void 0), " Open ", _jsx("input", { onChange: this.open, type: 'file', multiple: false, accept: '.molx,.molj' }, void 0)] }), void 0)] }), void 0), _jsxs("div", __assign({ className: 'msp-help-text', style: { padding: '10px' } }, { children: [_jsx(Icon, { svg: WarningSvg }, void 0), " This is an experimental feature and stored states/sessions might not be openable in a future version."] }), void 0)] }, void 0);
58
+ return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(Button, __assign({ icon: GetAppSvg, onClick: this.downloadToFileJson, title: 'Save the state description. Input data are loaded using the provided sources. Does not work if local files are used as input.' }, { children: "State" })), _jsx(Button, __assign({ icon: GetAppSvg, onClick: this.downloadToFileZip, title: 'Save the state including the input data.' }, { children: "Session" })), _jsxs("div", __assign({ className: 'msp-btn msp-btn-block msp-btn-action msp-loader-msp-btn-file' }, { children: [_jsx(Icon, { svg: OpenInBrowserSvg, inline: true }), " Open ", _jsx("input", { onChange: this.open, type: 'file', multiple: false, accept: '.molx,.molj' })] }))] })), _jsxs("div", __assign({ className: 'msp-help-text', style: { padding: '10px' } }, { children: [_jsx(Icon, { svg: WarningSvg }), " This is an experimental feature and stored states/sessions might not be openable in a future version."] }))] });
59
59
  };
60
60
  return StateExportImportControls;
61
61
  }(PluginUIComponent));
@@ -70,7 +70,7 @@ var LocalStateSnapshotParams = /** @class */ (function (_super) {
70
70
  this.subscribe(this.plugin.state.snapshotParams, function () { return _this.forceUpdate(); });
71
71
  };
72
72
  LocalStateSnapshotParams.prototype.render = function () {
73
- return _jsx(ParameterControls, { params: PluginState.SnapshotParams, values: this.plugin.state.snapshotParams.value, onChangeValues: this.plugin.state.setSnapshotParams }, void 0);
73
+ return _jsx(ParameterControls, { params: PluginState.SnapshotParams, values: this.plugin.state.snapshotParams.value, onChangeValues: this.plugin.state.setSnapshotParams });
74
74
  };
75
75
  return LocalStateSnapshotParams;
76
76
  }(PluginUIComponent));
@@ -96,7 +96,7 @@ var LocalStateSnapshots = /** @class */ (function (_super) {
96
96
  return !shallowEqualObjects(this.props, nextProps) || !shallowEqualObjects(this.state, nextState);
97
97
  };
98
98
  LocalStateSnapshots.prototype.render = function () {
99
- return _jsxs("div", { children: [_jsx(ParameterControls, { params: LocalStateSnapshots.Params, values: this.state.params, onEnter: this.add, onChangeValues: this.updateParams }, void 0), _jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(IconButton, { onClick: this.clear, svg: DeleteOutlinedSvg, title: 'Remove All' }, void 0), _jsx(Button, __assign({ onClick: this.add, icon: AddSvg, style: { textAlign: 'right' }, commit: true }, { children: "Add" }), void 0)] }), void 0)] }, void 0);
99
+ return _jsxs("div", { children: [_jsx(ParameterControls, { params: LocalStateSnapshots.Params, values: this.state.params, onEnter: this.add, onChangeValues: this.updateParams }), _jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(IconButton, { onClick: this.clear, svg: DeleteOutlinedSvg, title: 'Remove All' }), _jsx(Button, __assign({ onClick: this.add, icon: AddSvg, style: { textAlign: 'right' }, commit: true }, { children: "Add" }))] }))] });
100
100
  };
101
101
  LocalStateSnapshots.Params = {
102
102
  name: PD.Text(),
@@ -148,7 +148,7 @@ var LocalStateSnapshotList = /** @class */ (function (_super) {
148
148
  LocalStateSnapshotList.prototype.render = function () {
149
149
  var _this = this;
150
150
  var current = this.plugin.managers.snapshot.state.current;
151
- return _jsx("ul", __assign({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.plugin.managers.snapshot.state.entries.map(function (e) { return _jsxs("li", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ "data-id": e.snapshot.id, onClick: _this.apply, className: 'msp-no-overflow' }, { children: [_jsx("span", __assign({ style: { fontWeight: e.snapshot.id === current ? 'bold' : void 0 } }, { children: e.name || new Date(e.timestamp).toLocaleString() }), void 0), " ", _jsx("small", { children: "".concat(e.snapshot.durationInMs ? formatTimespan(e.snapshot.durationInMs, false) + "".concat(e.description ? ', ' : '') : '').concat(e.description ? e.description : '') }, void 0)] }), void 0), _jsx(IconButton, { svg: ArrowUpwardSvg, "data-id": e.snapshot.id, title: 'Move Up', onClick: _this.moveUp, flex: '20px' }, void 0), _jsx(IconButton, { svg: ArrowDownwardSvg, "data-id": e.snapshot.id, title: 'Move Down', onClick: _this.moveDown, flex: '20px' }, void 0), _jsx(IconButton, { svg: SwapHorizSvg, "data-id": e.snapshot.id, title: 'Replace', onClick: _this.replace, flex: '20px' }, void 0), _jsx(IconButton, { svg: DeleteOutlinedSvg, "data-id": e.snapshot.id, title: 'Remove', onClick: _this.remove, flex: '20px' }, void 0)] }), e.snapshot.id); }) }), void 0);
151
+ return _jsx("ul", __assign({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.plugin.managers.snapshot.state.entries.map(function (e) { return _jsxs("li", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ "data-id": e.snapshot.id, onClick: _this.apply, className: 'msp-no-overflow' }, { children: [_jsx("span", __assign({ style: { fontWeight: e.snapshot.id === current ? 'bold' : void 0 } }, { children: e.name || new Date(e.timestamp).toLocaleString() })), " ", _jsx("small", { children: "".concat(e.snapshot.durationInMs ? formatTimespan(e.snapshot.durationInMs, false) + "".concat(e.description ? ', ' : '') : '').concat(e.description ? e.description : '') })] })), _jsx(IconButton, { svg: ArrowUpwardSvg, "data-id": e.snapshot.id, title: 'Move Up', onClick: _this.moveUp, flex: '20px' }), _jsx(IconButton, { svg: ArrowDownwardSvg, "data-id": e.snapshot.id, title: 'Move Down', onClick: _this.moveDown, flex: '20px' }), _jsx(IconButton, { svg: SwapHorizSvg, "data-id": e.snapshot.id, title: 'Replace', onClick: _this.replace, flex: '20px' }), _jsx(IconButton, { svg: DeleteOutlinedSvg, "data-id": e.snapshot.id, title: 'Remove', onClick: _this.remove, flex: '20px' })] }), e.snapshot.id); }) }));
152
152
  };
153
153
  return LocalStateSnapshotList;
154
154
  }(PluginUIComponent));
@@ -302,13 +302,13 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
302
302
  };
303
303
  RemoteStateSnapshots.prototype.render = function () {
304
304
  var _this = this;
305
- return _jsxs(_Fragment, { children: [_jsx(SectionHeader, { title: 'Remote States', accent: 'blue' }, void 0), !this.props.listOnly && _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: this.Params, values: this.state.params, onEnter: this.upload, onChange: function (p) {
305
+ return _jsxs(_Fragment, { children: [_jsx(SectionHeader, { title: 'Remote States', accent: 'blue' }), !this.props.listOnly && _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: this.Params, values: this.state.params, onEnter: this.upload, onChange: function (p) {
306
306
  var _a;
307
307
  _this.setState({ params: __assign(__assign({}, _this.state.params), (_a = {}, _a[p.name] = p.value, _a)) });
308
- }, isDisabled: this.state.isBusy }, void 0), _jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(IconButton, { onClick: this.refresh, disabled: this.state.isBusy, svg: RefreshSvg }, void 0), _jsx(Button, __assign({ icon: CloudUploadSvg, onClick: this.upload, disabled: this.state.isBusy, commit: true }, { children: "Upload" }), void 0)] }), void 0)] }, void 0), _jsx(RemoteStateSnapshotList, { entries: this.state.entries, isBusy: this.state.isBusy, serverUrl: this.state.params.options.serverUrl, fetch: this.fetch, remove: this.props.listOnly ? void 0 : this.remove }, void 0), this.props.listOnly && _jsxs("div", __assign({ style: { marginTop: '10px' } }, { children: [_jsx(ParameterControls, { params: this.ListOnlyParams, values: this.state.params, onEnter: this.upload, onChange: function (p) {
308
+ }, isDisabled: this.state.isBusy }), _jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(IconButton, { onClick: this.refresh, disabled: this.state.isBusy, svg: RefreshSvg }), _jsx(Button, __assign({ icon: CloudUploadSvg, onClick: this.upload, disabled: this.state.isBusy, commit: true }, { children: "Upload" }))] }))] }), _jsx(RemoteStateSnapshotList, { entries: this.state.entries, isBusy: this.state.isBusy, serverUrl: this.state.params.options.serverUrl, fetch: this.fetch, remove: this.props.listOnly ? void 0 : this.remove }), this.props.listOnly && _jsxs("div", __assign({ style: { marginTop: '10px' } }, { children: [_jsx(ParameterControls, { params: this.ListOnlyParams, values: this.state.params, onEnter: this.upload, onChange: function (p) {
309
309
  var _a;
310
310
  _this.setState({ params: __assign(__assign({}, _this.state.params), (_a = {}, _a[p.name] = p.value, _a)) });
311
- }, isDisabled: this.state.isBusy }, void 0), _jsx("div", __assign({ className: 'msp-flex-row' }, { children: _jsx(Button, __assign({ onClick: this.refresh, disabled: this.state.isBusy, icon: RefreshSvg }, { children: "Refresh" }), void 0) }), void 0)] }), void 0)] }, void 0);
311
+ }, isDisabled: this.state.isBusy }), _jsx("div", __assign({ className: 'msp-flex-row' }, { children: _jsx(Button, __assign({ onClick: this.refresh, disabled: this.state.isBusy, icon: RefreshSvg }, { children: "Refresh" })) }))] }))] });
312
312
  };
313
313
  return RemoteStateSnapshots;
314
314
  }(PluginUIComponent));
@@ -339,7 +339,7 @@ var RemoteStateSnapshotList = /** @class */ (function (_super) {
339
339
  }
340
340
  RemoteStateSnapshotList.prototype.render = function () {
341
341
  var _this = this;
342
- return _jsx("ul", __assign({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.props.entries.valueSeq().map(function (e) { return _jsxs("li", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ "data-id": e.id, onClick: _this.props.fetch, disabled: _this.props.isBusy, onContextMenu: _this.open, title: 'Click to download, right-click to open in a new tab.' }, { children: [e.name || new Date(e.timestamp).toLocaleString(), " ", _jsx("small", { children: e.description }, void 0)] }), void 0), !e.isSticky && _this.props.remove && _jsx(IconButton, { svg: DeleteOutlinedSvg, "data-id": e.id, title: 'Remove', onClick: _this.props.remove, disabled: _this.props.isBusy, small: true }, void 0)] }), e.id); }) }), void 0);
342
+ return _jsx("ul", __assign({ style: { listStyle: 'none', marginTop: '10px' }, className: 'msp-state-list' }, { children: this.props.entries.valueSeq().map(function (e) { return _jsxs("li", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ "data-id": e.id, onClick: _this.props.fetch, disabled: _this.props.isBusy, onContextMenu: _this.open, title: 'Click to download, right-click to open in a new tab.' }, { children: [e.name || new Date(e.timestamp).toLocaleString(), " ", _jsx("small", { children: e.description })] })), !e.isSticky && _this.props.remove && _jsx(IconButton, { svg: DeleteOutlinedSvg, "data-id": e.id, title: 'Remove', onClick: _this.props.remove, disabled: _this.props.isBusy, small: true })] }), e.id); }) }));
343
343
  };
344
344
  return RemoteStateSnapshotList;
345
345
  }(PurePluginUIComponent));
@@ -39,9 +39,9 @@ var StateTree = /** @class */ (function (_super) {
39
39
  StateTree.prototype.render = function () {
40
40
  var ref = this.props.state.tree.root.ref;
41
41
  if (this.state.showActions) {
42
- return _jsxs("div", __assign({ style: { margin: '10px', cursor: 'default' } }, { children: [_jsx("p", { children: "Nothing to see here yet." }, void 0), _jsxs("p", { children: ["Structures and Volumes can be loaded from the ", _jsx(Icon, { svg: HomeOutlinedSvg }, void 0), " tab."] }, void 0)] }), void 0);
42
+ return _jsxs("div", __assign({ style: { margin: '10px', cursor: 'default' } }, { children: [_jsx("p", { children: "Nothing to see here yet." }), _jsxs("p", { children: ["Structures and Volumes can be loaded from the ", _jsx(Icon, { svg: HomeOutlinedSvg }), " tab."] })] }));
43
43
  }
44
- return _jsx(StateTreeNode, { cell: this.props.state.cells.get(ref), depth: 0 }, void 0);
44
+ return _jsx(StateTreeNode, { cell: this.props.state.cells.get(ref), depth: 0 });
45
45
  };
46
46
  return StateTree;
47
47
  }(PluginUIComponent));
@@ -119,12 +119,12 @@ var StateTreeNode = /** @class */ (function (_super) {
119
119
  if (!this.state.showLabel) {
120
120
  if (children.size === 0)
121
121
  return null;
122
- return _jsx(_Fragment, { children: children.map(function (c) { return _jsx(StateTreeNode, { cell: cell.parent.cells.get(c), depth: _this.props.depth }, c); }) }, void 0);
122
+ return _jsx(_Fragment, { children: children.map(function (c) { return _jsx(StateTreeNode, { cell: cell.parent.cells.get(c), depth: _this.props.depth }, c); }) });
123
123
  }
124
124
  var newDepth = this.props.depth + 1;
125
- return _jsxs(_Fragment, { children: [_jsx(StateTreeNodeLabel, { cell: cell, depth: this.props.depth }, void 0), children.size === 0
125
+ return _jsxs(_Fragment, { children: [_jsx(StateTreeNodeLabel, { cell: cell, depth: this.props.depth }), children.size === 0
126
126
  ? void 0
127
- : _jsx("div", __assign({ style: { display: this.state.isCollapsed ? 'none' : 'block' } }, { children: children.map(function (c) { return _jsx(StateTreeNode, { cell: cell.parent.cells.get(c), depth: newDepth }, c); }) }), void 0)] }, void 0);
127
+ : _jsx("div", __assign({ style: { display: this.state.isCollapsed ? 'none' : 'block' } }, { children: children.map(function (c) { return _jsx(StateTreeNode, { cell: cell.parent.cells.get(c), depth: newDepth }, c); }) }))] });
128
128
  };
129
129
  return StateTreeNode;
130
130
  }(PluginUIComponent));
@@ -247,7 +247,7 @@ var StateTreeNodeLabel = /** @class */ (function (_super) {
247
247
  var d = decoratorChain[i];
248
248
  decorators.push(_jsx(UpdateTransformControl, { state: cell.parent, transform: d.transform, noMargin: true, wrapInExpander: true, expanderHeaderLeftMargin: margin }, "".concat(d.transform.transformer.id, "-").concat(i)));
249
249
  }
250
- return _jsx("div", __assign({ className: 'msp-tree-updates-wrapper' }, { children: decorators }), void 0);
250
+ return _jsx("div", __assign({ className: 'msp-tree-updates-wrapper' }, { children: decorators }));
251
251
  };
252
252
  StateTreeNodeLabel.prototype.render = function () {
253
253
  var cell = this.props.cell;
@@ -259,31 +259,31 @@ var StateTreeNodeLabel = /** @class */ (function (_super) {
259
259
  var label;
260
260
  if (cell.status === 'error' || !cell.obj) {
261
261
  var name_1 = cell.status === 'error' ? cell.errorText : n.transformer.definition.display.name;
262
- label = _jsxs(Button, __assign({ className: 'msp-btn-tree-label msp-no-hover-outline', noOverflow: true, title: name_1, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent, disabled: disabled }, { children: [cell.status === 'error' && _jsxs("b", { children: ["[", cell.status, "]"] }, void 0), " ", _jsx("span", { children: name_1 }, void 0)] }), void 0);
262
+ label = _jsxs(Button, __assign({ className: 'msp-btn-tree-label msp-no-hover-outline', noOverflow: true, title: name_1, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent, disabled: disabled }, { children: [cell.status === 'error' && _jsxs("b", { children: ["[", cell.status, "]"] }), " ", _jsx("span", { children: name_1 })] }));
263
263
  }
264
264
  else {
265
265
  var obj = cell.obj;
266
266
  var title = "".concat(obj.label, " ").concat(obj.description ? obj.description : '');
267
- label = _jsxs(Button, __assign({ className: "msp-btn-tree-label msp-type-class-".concat(obj.type.typeClass), noOverflow: true, disabled: disabled, title: title, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent }, { children: [_jsx("span", { children: obj.label }, void 0), " ", obj.description ? _jsx("small", { children: obj.description }, void 0) : void 0] }), void 0);
267
+ label = _jsxs(Button, __assign({ className: "msp-btn-tree-label msp-type-class-".concat(obj.type.typeClass), noOverflow: true, disabled: disabled, title: title, onClick: this.state.isCurrent ? this.setCurrentRoot : this.setCurrent }, { children: [_jsx("span", { children: obj.label }), " ", obj.description ? _jsx("small", { children: obj.description }) : void 0] }));
268
268
  }
269
269
  var children = cell.parent.tree.children.get(this.ref);
270
270
  var cellState = cell.state;
271
- var expand = _jsx(IconButton, { svg: cellState.isCollapsed ? ArrowRightSvg : ArrowDropDownSvg, flex: '20px', disabled: disabled, onClick: this.toggleExpanded, transparent: true, className: 'msp-no-hover-outline', style: { visibility: children.size > 0 ? 'visible' : 'hidden' } }, void 0);
272
- var remove = !cell.state.isLocked ? _jsx(IconButton, { svg: DeleteOutlinedSvg, onClick: this.remove, disabled: disabled, small: true, toggleState: false }, void 0) : void 0;
273
- var visibility = _jsx(IconButton, { svg: cellState.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, disabled: disabled, small: true, onClick: this.toggleVisible }, void 0);
271
+ var expand = _jsx(IconButton, { svg: cellState.isCollapsed ? ArrowRightSvg : ArrowDropDownSvg, flex: '20px', disabled: disabled, onClick: this.toggleExpanded, transparent: true, className: 'msp-no-hover-outline', style: { visibility: children.size > 0 ? 'visible' : 'hidden' } });
272
+ var remove = !cell.state.isLocked ? _jsx(IconButton, { svg: DeleteOutlinedSvg, onClick: this.remove, disabled: disabled, small: true, toggleState: false }) : void 0;
273
+ var visibility = _jsx(IconButton, { svg: cellState.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, disabled: disabled, small: true, onClick: this.toggleVisible });
274
274
  var marginStyle = {
275
275
  marginLeft: "".concat(this.props.depth * 8, "px")
276
276
  };
277
- var row = _jsxs("div", __assign({ className: "msp-flex-row msp-tree-row".concat(isCurrent ? ' msp-tree-row-current' : ''), onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: marginStyle }, { children: [expand, label, remove, visibility] }), void 0);
277
+ var row = _jsxs("div", __assign({ className: "msp-flex-row msp-tree-row".concat(isCurrent ? ' msp-tree-row-current' : ''), onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: marginStyle }, { children: [expand, label, remove, visibility] }));
278
278
  if (!isCurrent)
279
279
  return row;
280
280
  if (this.state.action === 'apply' && this.state.currentAction) {
281
- return _jsxs("div", __assign({ style: { marginBottom: '1px' } }, { children: [row, _jsx(ControlGroup, __assign({ header: "Apply ".concat(this.state.currentAction.definition.display.name), initialExpanded: true, hideExpander: true, hideOffset: false, onHeaderClick: this.hideApply, topRightIcon: CloseSvg, headerLeftMargin: "".concat(this.props.depth * 8 + 21, "px") }, { children: _jsx(ApplyActionControl, { onApply: this.hideApply, state: this.props.cell.parent, action: this.state.currentAction, nodeRef: this.props.cell.transform.ref, hideHeader: true, noMargin: true }, void 0) }), void 0)] }), void 0);
281
+ return _jsxs("div", __assign({ style: { marginBottom: '1px' } }, { children: [row, _jsx(ControlGroup, __assign({ header: "Apply ".concat(this.state.currentAction.definition.display.name), initialExpanded: true, hideExpander: true, hideOffset: false, onHeaderClick: this.hideApply, topRightIcon: CloseSvg, headerLeftMargin: "".concat(this.props.depth * 8 + 21, "px") }, { children: _jsx(ApplyActionControl, { onApply: this.hideApply, state: this.props.cell.parent, action: this.state.currentAction, nodeRef: this.props.cell.transform.ref, hideHeader: true, noMargin: true }) }))] }));
282
282
  }
283
283
  if (this.state.action === 'options') {
284
284
  var actions = this.actions;
285
285
  var updates = this.updates("".concat(this.props.depth * 8 + 21, "px"));
286
- return _jsxs("div", __assign({ style: { marginBottom: '1px' } }, { children: [row, updates, actions && _jsx("div", __assign({ style: { marginLeft: "".concat(this.props.depth * 8 + 21, "px"), marginTop: '-1px' } }, { children: _jsx(ActionMenu, { items: actions, onSelect: this.selectAction }, void 0) }), void 0)] }), void 0);
286
+ return _jsxs("div", __assign({ style: { marginBottom: '1px' } }, { children: [row, updates, actions && _jsx("div", __assign({ style: { marginLeft: "".concat(this.props.depth * 8 + 21, "px"), marginTop: '-1px' } }, { children: _jsx(ActionMenu, { items: actions, onSelect: this.selectAction }) }))] }));
287
287
  }
288
288
  return row;
289
289
  };
@@ -104,7 +104,7 @@ var TransformUpdaterControl = /** @class */ (function (_super) {
104
104
  if (!cell || (cell.status !== 'ok' && cell.status !== 'error'))
105
105
  return null;
106
106
  var transform = cell.transform;
107
- return _jsx(UpdateTransformControl, { state: state, transform: transform, initiallyCollapsed: this.props.initiallyCollapsed, customHeader: this.props.header }, void 0);
107
+ return _jsx(UpdateTransformControl, { state: state, transform: transform, initiallyCollapsed: this.props.initiallyCollapsed, customHeader: this.props.header });
108
108
  };
109
109
  return TransformUpdaterControl;
110
110
  }(PluginUIComponent));
@@ -33,7 +33,7 @@ var StructureComponentControls = /** @class */ (function (_super) {
33
33
  }); });
34
34
  };
35
35
  StructureComponentControls.prototype.renderControls = function () {
36
- return _jsxs(_Fragment, { children: [_jsx(ComponentEditorControls, {}, void 0), _jsx(ComponentListControls, {}, void 0), _jsx(GenericEntryListControls, {}, void 0)] }, void 0);
36
+ return _jsxs(_Fragment, { children: [_jsx(ComponentEditorControls, {}), _jsx(ComponentListControls, {}), _jsx(GenericEntryListControls, {})] });
37
37
  };
38
38
  return StructureComponentControls;
39
39
  }(CollapsableControls));
@@ -96,7 +96,7 @@ var ComponentEditorControls = /** @class */ (function (_super) {
96
96
  };
97
97
  Object.defineProperty(ComponentEditorControls.prototype, "presetControls", {
98
98
  get: function () {
99
- return _jsx(ActionMenu, { items: this.presetActions, onSelect: this.applyPreset }, void 0);
99
+ return _jsx(ActionMenu, { items: this.presetActions, onSelect: this.applyPreset });
100
100
  },
101
101
  enumerable: false,
102
102
  configurable: true
@@ -114,7 +114,7 @@ var ComponentEditorControls = /** @class */ (function (_super) {
114
114
  var undoTitle = this.state.canUndo
115
115
  ? "Undo ".concat(this.plugin.state.data.latestUndoLabel)
116
116
  : 'Some mistakes of the past can be undone.';
117
- return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(ToggleButton, { icon: BookmarksOutlinedSvg, label: 'Preset', title: 'Apply a representation preset for the current structure(s).', toggle: this.togglePreset, isSelected: this.state.action === 'preset', disabled: this.isDisabled }, void 0), _jsx(ToggleButton, { icon: AddSvg, label: 'Add', title: 'Add a new representation component for a selection.', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.isDisabled }, void 0), _jsx(ToggleButton, { icon: TuneSvg, label: '', title: 'Options that are applied to all applicable representations.', style: { flex: '0 0 40px', padding: 0 }, toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.isDisabled }, void 0), _jsx(IconButton, { svg: RestoreSvg, className: 'msp-flex-item', flex: '40px', onClick: this.undo, disabled: !this.state.canUndo || this.isDisabled, title: undoTitle }, void 0)] }), void 0), this.state.action === 'preset' && this.presetControls, this.state.action === 'add' && _jsx("div", __assign({ className: 'msp-control-offset' }, { children: _jsx(AddComponentControls, { onApply: this.hideAction }, void 0) }), void 0), this.state.action === 'options' && _jsx("div", __assign({ className: 'msp-control-offset' }, { children: _jsx(ComponentOptionsControls, { isDisabled: this.isDisabled }, void 0) }), void 0)] }, void 0);
117
+ return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(ToggleButton, { icon: BookmarksOutlinedSvg, label: 'Preset', title: 'Apply a representation preset for the current structure(s).', toggle: this.togglePreset, isSelected: this.state.action === 'preset', disabled: this.isDisabled }), _jsx(ToggleButton, { icon: AddSvg, label: 'Add', title: 'Add a new representation component for a selection.', toggle: this.toggleAdd, isSelected: this.state.action === 'add', disabled: this.isDisabled }), _jsx(ToggleButton, { icon: TuneSvg, label: '', title: 'Options that are applied to all applicable representations.', style: { flex: '0 0 40px', padding: 0 }, toggle: this.toggleOptions, isSelected: this.state.action === 'options', disabled: this.isDisabled }), _jsx(IconButton, { svg: RestoreSvg, className: 'msp-flex-item', flex: '40px', onClick: this.undo, disabled: !this.state.canUndo || this.isDisabled, title: undoTitle })] })), this.state.action === 'preset' && this.presetControls, this.state.action === 'add' && _jsx("div", __assign({ className: 'msp-control-offset' }, { children: _jsx(AddComponentControls, { onApply: this.hideAction }) })), this.state.action === 'options' && _jsx("div", __assign({ className: 'msp-control-offset' }, { children: _jsx(ComponentOptionsControls, { isDisabled: this.isDisabled }) }))] });
118
118
  };
119
119
  return ComponentEditorControls;
120
120
  }(PurePluginUIComponent));
@@ -150,7 +150,7 @@ var AddComponentControls = /** @class */ (function (_super) {
150
150
  configurable: true
151
151
  });
152
152
  AddComponentControls.prototype.render = function () {
153
- return _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: this.state.params, values: this.state.values, onChangeValues: this.paramsChanged }, void 0), _jsx(Button, __assign({ icon: AddSvg, title: 'Use Selection and optional Representation to create a new Component.', className: 'msp-btn-commit msp-btn-commit-on', onClick: this.apply, style: { marginTop: '1px' } }, { children: "Create Component" }), void 0)] }, void 0);
153
+ return _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: this.state.params, values: this.state.values, onChangeValues: this.paramsChanged }), _jsx(Button, __assign({ icon: AddSvg, title: 'Use Selection and optional Representation to create a new Component.', className: 'msp-btn-commit msp-btn-commit-on', onClick: this.apply, style: { marginTop: '1px' } }, { children: "Create Component" }))] });
154
154
  };
155
155
  return AddComponentControls;
156
156
  }(PurePluginUIComponent));
@@ -167,7 +167,7 @@ var ComponentOptionsControls = /** @class */ (function (_super) {
167
167
  this.subscribe(this.plugin.managers.structure.component.events.optionsUpdated, function () { return _this.forceUpdate(); });
168
168
  };
169
169
  ComponentOptionsControls.prototype.render = function () {
170
- return _jsx(ParameterControls, { params: StructureComponentManager.OptionsParams, values: this.plugin.managers.structure.component.state.options, onChangeValues: this.update, isDisabled: this.props.isDisabled }, void 0);
170
+ return _jsx(ParameterControls, { params: StructureComponentManager.OptionsParams, values: this.plugin.managers.structure.component.state.options, onChangeValues: this.update, isDisabled: this.props.isDisabled });
171
171
  };
172
172
  return ComponentOptionsControls;
173
173
  }(PurePluginUIComponent));
@@ -186,7 +186,7 @@ var ComponentListControls = /** @class */ (function (_super) {
186
186
  var componentGroups = this.plugin.managers.structure.hierarchy.currentComponentGroups;
187
187
  if (componentGroups.length === 0)
188
188
  return null;
189
- return _jsx("div", __assign({ style: { marginTop: '6px' } }, { children: componentGroups.map(function (g) { return _jsx(StructureComponentGroup, { group: g }, g[0].cell.transform.ref); }) }), void 0);
189
+ return _jsx("div", __assign({ style: { marginTop: '6px' } }, { children: componentGroups.map(function (g) { return _jsx(StructureComponentGroup, { group: g }, g[0].cell.transform.ref); }) }));
190
190
  };
191
191
  return ComponentListControls;
192
192
  }(PurePluginUIComponent));
@@ -326,7 +326,7 @@ var StructureComponentGroup = /** @class */ (function (_super) {
326
326
  var cell = component.cell;
327
327
  var label = (_a = cell.obj) === null || _a === void 0 ? void 0 : _a.label;
328
328
  var reprLabel = this.reprLabel;
329
- return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ noOverflow: true, className: 'msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, _jsx("small", __assign({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: reprLabel }), void 0)] }), void 0), _jsx(IconButton, { svg: cell.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(cell.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }, void 0), _jsx(IconButton, { svg: DeleteOutlinedSvg, toggleState: false, onClick: this.remove, title: 'Remove', small: true, className: 'msp-form-control', flex: true }, void 0), _jsx(IconButton, { svg: MoreHorizSvg, onClick: this.toggleAction, title: 'Actions', toggleState: this.state.action === 'action', className: 'msp-form-control', flex: true }, void 0)] }), void 0), this.state.action === 'label' && _jsx("div", __assign({ className: 'msp-control-offset', style: { marginBottom: '6px' } }, { children: _jsx(ControlRow, { label: 'Label', control: _jsxs("div", __assign({ style: { display: 'flex', textAlignLast: 'center' } }, { children: [_jsx(TextInput, { onChange: this.updateLabel, value: label, style: { flex: '1 1 auto', minWidth: 0 }, className: 'msp-form-control', blurOnEnter: true, blurOnEscape: true }, void 0), _jsx(IconButton, { svg: CheckSvg, onClick: this.toggleLabel, className: 'msp-form-control msp-control-button-label', flex: true }, void 0)] }), void 0) }, void 0) }), void 0), this.state.action === 'action' && _jsxs("div", __assign({ className: 'msp-accent-offset' }, { children: [_jsx("div", __assign({ style: { marginBottom: '6px' } }, { children: _jsx(ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }, void 0) }), void 0), _jsx("div", __assign({ style: { marginBottom: '6px' } }, { children: component.representations.map(function (r) { return _jsx(StructureRepresentationEntry, { group: _this.props.group, representation: r }, r.cell.transform.ref); }) }), void 0)] }), void 0)] }, void 0);
329
+ return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsxs(Button, __assign({ noOverflow: true, className: 'msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, _jsx("small", __assign({ className: 'msp-25-lower-contrast-text', style: { float: 'right' } }, { children: reprLabel }))] })), _jsx(IconButton, { svg: cell.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: "".concat(cell.state.isHidden ? 'Show' : 'Hide', " component"), small: true, className: 'msp-form-control', flex: true }), _jsx(IconButton, { svg: DeleteOutlinedSvg, toggleState: false, onClick: this.remove, title: 'Remove', small: true, className: 'msp-form-control', flex: true }), _jsx(IconButton, { svg: MoreHorizSvg, onClick: this.toggleAction, title: 'Actions', toggleState: this.state.action === 'action', className: 'msp-form-control', flex: true })] })), this.state.action === 'label' && _jsx("div", __assign({ className: 'msp-control-offset', style: { marginBottom: '6px' } }, { children: _jsx(ControlRow, { label: 'Label', control: _jsxs("div", __assign({ style: { display: 'flex', textAlignLast: 'center' } }, { children: [_jsx(TextInput, { onChange: this.updateLabel, value: label, style: { flex: '1 1 auto', minWidth: 0 }, className: 'msp-form-control', blurOnEnter: true, blurOnEscape: true }), _jsx(IconButton, { svg: CheckSvg, onClick: this.toggleLabel, className: 'msp-form-control msp-control-button-label', flex: true })] })) }) })), this.state.action === 'action' && _jsxs("div", __assign({ className: 'msp-accent-offset' }, { children: [_jsx("div", __assign({ style: { marginBottom: '6px' } }, { children: _jsx(ActionMenu, { items: this.actions, onSelect: this.selectAction, noOffset: true }) })), _jsx("div", __assign({ style: { marginBottom: '6px' } }, { children: component.representations.map(function (r) { return _jsx(StructureRepresentationEntry, { group: _this.props.group, representation: r }, r.cell.transform.ref); }) }))] }))] });
330
330
  };
331
331
  return StructureComponentGroup;
332
332
  }(PurePluginUIComponent));
@@ -353,11 +353,11 @@ var StructureRepresentationEntry = /** @class */ (function (_super) {
353
353
  StructureRepresentationEntry.prototype.render = function () {
354
354
  var _a;
355
355
  var repr = this.props.representation.cell;
356
- return _jsxs("div", __assign({ className: 'msp-representation-entry' }, { children: [repr.parent && _jsx(ExpandGroup, __assign({ header: "".concat(((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) || '', " Representation"), noOffset: true }, { children: _jsx(UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', customUpdate: this.update, noMargin: true }, void 0) }), void 0), _jsx(IconButton, { svg: DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true, className: 'msp-default-bg', toggleState: false, style: {
356
+ return _jsxs("div", __assign({ className: 'msp-representation-entry' }, { children: [repr.parent && _jsx(ExpandGroup, __assign({ header: "".concat(((_a = repr.obj) === null || _a === void 0 ? void 0 : _a.label) || '', " Representation"), noOffset: true }, { children: _jsx(UpdateTransformControl, { state: repr.parent, transform: repr.transform, customHeader: 'none', customUpdate: this.update, noMargin: true }) })), _jsx(IconButton, { svg: DeleteOutlinedSvg, onClick: this.remove, title: 'Remove', small: true, className: 'msp-default-bg', toggleState: false, style: {
357
357
  position: 'absolute', top: 0, right: '32px', lineHeight: '24px', height: '24px', textAlign: 'right', width: '44px', paddingRight: '6px', background: 'none'
358
- } }, void 0), _jsx(IconButton, { svg: this.props.representation.cell.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: 'Toggle Visibility', small: true, className: 'msp-default-bg', style: {
358
+ } }), _jsx(IconButton, { svg: this.props.representation.cell.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, onClick: this.toggleVisible, title: 'Toggle Visibility', small: true, className: 'msp-default-bg', style: {
359
359
  position: 'absolute', top: 0, right: 0, lineHeight: '24px', height: '24px', textAlign: 'right', width: '32px', paddingRight: '6px', background: 'none'
360
- } }, void 0)] }), void 0);
360
+ } })] }));
361
361
  };
362
362
  return StructureRepresentationEntry;
363
363
  }(PurePluginUIComponent));
@@ -222,7 +222,7 @@ var StructureFocusControls = /** @class */ (function (_super) {
222
222
  title += "\nor use '".concat(binding, "' on element");
223
223
  }
224
224
  }
225
- return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(Button, __assign({ noOverflow: true, onClick: this.focusCamera, title: title, onMouseEnter: this.highlightCurrent, onMouseLeave: this.clearHighlights, disabled: this.isDisabled || !current, style: { textAlignLast: current ? 'left' : void 0 } }, { children: label }), void 0), current && _jsx(IconButton, { svg: CancelOutlinedSvg, onClick: this.clear, title: 'Clear', className: 'msp-form-control', flex: true, disabled: this.isDisabled }, void 0), _jsx(ToggleButton, { icon: CenterFocusStrongSvg, title: 'Select a focus target to center on an show its surroundings. Hold shift to focus on multiple targets.', toggle: this.toggleAction, isSelected: this.state.showAction, disabled: this.isDisabled, style: { flex: '0 0 40px', padding: 0 } }, void 0)] }), void 0), this.state.showAction && _jsx(ActionMenu, { items: this.actionItems, onSelect: this.selectAction }, void 0)] }, void 0);
225
+ return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsx(Button, __assign({ noOverflow: true, onClick: this.focusCamera, title: title, onMouseEnter: this.highlightCurrent, onMouseLeave: this.clearHighlights, disabled: this.isDisabled || !current, style: { textAlignLast: current ? 'left' : void 0 } }, { children: label })), current && _jsx(IconButton, { svg: CancelOutlinedSvg, onClick: this.clear, title: 'Clear', className: 'msp-form-control', flex: true, disabled: this.isDisabled }), _jsx(ToggleButton, { icon: CenterFocusStrongSvg, title: 'Select a focus target to center on an show its surroundings. Hold shift to focus on multiple targets.', toggle: this.toggleAction, isSelected: this.state.showAction, disabled: this.isDisabled, style: { flex: '0 0 40px', padding: 0 } })] })), this.state.showAction && _jsx(ActionMenu, { items: this.actionItems, onSelect: this.selectAction })] });
226
226
  };
227
227
  return StructureFocusControls;
228
228
  }(PluginUIComponent));
@@ -37,7 +37,7 @@ var GenericEntryListControls = /** @class */ (function (_super) {
37
37
  }
38
38
  if (refs.length === 0)
39
39
  return null;
40
- return _jsx(GenericEntry, { refs: refs, labelMultiple: 'Unit Cells' }, void 0);
40
+ return _jsx(GenericEntry, { refs: refs, labelMultiple: 'Unit Cells' });
41
41
  },
42
42
  enumerable: false,
43
43
  configurable: true
@@ -49,7 +49,7 @@ var GenericEntryListControls = /** @class */ (function (_super) {
49
49
  this.plugin.genericRepresentationControls.forEach(function (provider, key) {
50
50
  var _a = provider(_this.plugin.managers.structure.hierarchy.selection), refs = _a[0], labelMultiple = _a[1];
51
51
  if (refs.length > 0) {
52
- controls.push(_jsx("div", { children: _jsx(GenericEntry, { refs: refs, labelMultiple: labelMultiple }, void 0) }, key));
52
+ controls.push(_jsx("div", { children: _jsx(GenericEntry, { refs: refs, labelMultiple: labelMultiple }) }, key));
53
53
  }
54
54
  });
55
55
  return controls.length > 0 ? controls : null;
@@ -58,7 +58,7 @@ var GenericEntryListControls = /** @class */ (function (_super) {
58
58
  configurable: true
59
59
  });
60
60
  GenericEntryListControls.prototype.render = function () {
61
- return _jsx(_Fragment, { children: _jsxs("div", __assign({ style: { marginTop: '6px' } }, { children: [this.unitcell, this.customControls] }), void 0) }, void 0);
61
+ return _jsx(_Fragment, { children: _jsxs("div", __assign({ style: { marginTop: '6px' } }, { children: [this.unitcell, this.customControls] })) });
62
62
  };
63
63
  return GenericEntryListControls;
64
64
  }(PurePluginUIComponent));
@@ -144,7 +144,7 @@ var GenericEntry = /** @class */ (function (_super) {
144
144
  else {
145
145
  label = "".concat(refs.length, " ").concat(labelMultiple || 'Objects');
146
146
  }
147
- return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsxs("button", __assign({ className: 'msp-form-control msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, " ", _jsx("small", { children: description }, void 0)] }), void 0), _jsx(IconButton, { svg: pivot.cell.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, className: 'msp-form-control', onClick: this.toggleVisibility, title: "".concat(pivot.cell.state.isHidden ? 'Show' : 'Hide'), small: true, flex: true }, void 0), refs.length === 1 && _jsx(IconButton, { svg: MoreHorizSvg, className: 'msp-form-control', onClick: this.toggleOptions, title: 'Options', toggleState: this.state.showOptions, flex: true }, void 0)] }), void 0), (refs.length === 1 && this.state.showOptions && pivot.cell.parent) && _jsx(_Fragment, { children: _jsx("div", __assign({ className: 'msp-control-offset' }, { children: _jsx(UpdateTransformControl, { state: pivot.cell.parent, transform: pivot.cell.transform, customHeader: 'none', autoHideApply: true }, void 0) }), void 0) }, void 0)] }, void 0);
147
+ return _jsxs(_Fragment, { children: [_jsxs("div", __assign({ className: 'msp-flex-row' }, { children: [_jsxs("button", __assign({ className: 'msp-form-control msp-control-button-label', title: "".concat(label, ". Click to focus."), onClick: this.focus, onMouseEnter: this.highlight, onMouseLeave: this.clearHighlight, style: { textAlign: 'left' } }, { children: [label, " ", _jsx("small", { children: description })] })), _jsx(IconButton, { svg: pivot.cell.state.isHidden ? VisibilityOffOutlinedSvg : VisibilityOutlinedSvg, toggleState: false, className: 'msp-form-control', onClick: this.toggleVisibility, title: "".concat(pivot.cell.state.isHidden ? 'Show' : 'Hide'), small: true, flex: true }), refs.length === 1 && _jsx(IconButton, { svg: MoreHorizSvg, className: 'msp-form-control', onClick: this.toggleOptions, title: 'Options', toggleState: this.state.showOptions, flex: true })] })), (refs.length === 1 && this.state.showOptions && pivot.cell.parent) && _jsx(_Fragment, { children: _jsx("div", __assign({ className: 'msp-control-offset' }, { children: _jsx(UpdateTransformControl, { state: pivot.cell.parent, transform: pivot.cell.transform, customHeader: 'none', autoHideApply: true }) })) })] });
148
148
  };
149
149
  return GenericEntry;
150
150
  }(PurePluginUIComponent));