molstar 3.3.0 → 3.5.0

package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -22,9 +22,9 @@ var color_smoothing_1 = require("../../../mol-geo/geometry/mesh/color-smoothing"
 var color_smoothing_2 = require("../../../mol-geo/geometry/texture-mesh/color-smoothing");
 var base_1 = require("../../../mol-geo/geometry/base");
 var linear_algebra_1 = require("../../../mol-math/linear-algebra");
-var SharedParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, gaussian_1.GaussianDensityParams), base_1.ColorSmoothingParams), { ignoreHydrogens: param_definition_1.ParamDefinition.Boolean(false), tryUseGpu: param_definition_1.ParamDefinition.Boolean(true), includeParent: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) });
-exports.GaussianSurfaceMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsTextureMeshParams), SharedParams);
-exports.StructureGaussianSurfaceMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, complex_visual_1.ComplexMeshParams), complex_visual_1.ComplexTextureMeshParams), SharedParams);
+var SharedParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, gaussian_1.GaussianDensityParams), base_1.ColorSmoothingParams), { ignoreHydrogens: param_definition_1.ParamDefinition.Boolean(false), tryUseGpu: param_definition_1.ParamDefinition.Boolean(true), includeParent: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) });
+exports.GaussianSurfaceMeshParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsTextureMeshParams), SharedParams);
+exports.StructureGaussianSurfaceMeshParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, complex_visual_1.ComplexMeshParams), complex_visual_1.ComplexTextureMeshParams), SharedParams);
 function gpuSupport(webgl) {
     return webgl.extensions.colorBufferFloat && webgl.extensions.textureFloat && webgl.extensions.blendMinMax && webgl.extensions.drawBuffers;
 }
@@ -55,15 +55,15 @@ function StructureGaussianSurfaceVisual(materialId, structure, props, webgl) {
 exports.StructureGaussianSurfaceVisual = StructureGaussianSurfaceVisual;
 //
 function createGaussianSurfaceMesh(ctx, unit, structure, theme, props, mesh) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var smoothness, _a, transform, field, idField, radiusFactor, resolution, params, surface, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        var smoothness, _a, transform, field, idField, radiusFactor, resolution, maxRadius, params, surface, sphere;
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     smoothness = props.smoothness;
                     return [4 /*yield*/, (0, gaussian_1.computeUnitGaussianDensity)(structure, unit, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
-                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, radiusFactor = _a.radiusFactor, resolution = _a.resolution;
+                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, radiusFactor = _a.radiusFactor, resolution = _a.resolution, maxRadius = _a.maxRadius;
                     params = {
                         isoLevel: Math.exp(-smoothness) / radiusFactor,
                         scalarField: field,
@@ -76,7 +76,7 @@ function createGaussianSurfaceMesh(ctx, unit, structure, theme, props, mesh) {
                     mesh_1.Mesh.transform(surface, transform);
                     if (ctx.webgl && !ctx.webgl.isWebGL2)
                         mesh_1.Mesh.uniformTriangleGroup(surface);
-                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, props.radiusOffset + (0, common_1.getUnitExtraRadius)(unit));
+                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, maxRadius);
                     surface.setBoundingSphere(sphere);
                     return [2 /*return*/, surface];
             }
@@ -133,15 +133,15 @@ function GaussianSurfaceMeshVisual(materialId) {
 exports.GaussianSurfaceMeshVisual = GaussianSurfaceMeshVisual;
 //
 function createStructureGaussianSurfaceMesh(ctx, structure, theme, props, mesh) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var smoothness, _a, transform, field, idField, radiusFactor, resolution, params, surface, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        var smoothness, _a, transform, field, idField, radiusFactor, resolution, maxRadius, params, surface, sphere;
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     smoothness = props.smoothness;
                     return [4 /*yield*/, (0, gaussian_1.computeStructureGaussianDensity)(structure, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
-                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, radiusFactor = _a.radiusFactor, resolution = _a.resolution;
+                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, radiusFactor = _a.radiusFactor, resolution = _a.resolution, maxRadius = _a.maxRadius;
                     params = {
                         isoLevel: Math.exp(-smoothness) / radiusFactor,
                         scalarField: field,
@@ -154,7 +154,7 @@ function createStructureGaussianSurfaceMesh(ctx, structure, theme, props, mesh)
                     mesh_1.Mesh.transform(surface, transform);
                     if (ctx.webgl && !ctx.webgl.isWebGL2)
                         mesh_1.Mesh.uniformTriangleGroup(surface);
-                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, props.radiusOffset + (0, common_1.getStructureExtraRadius)(structure));
+                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, maxRadius);
                     surface.setBoundingSphere(sphere);
                     return [2 /*return*/, surface];
             }
@@ -210,9 +210,9 @@ exports.StructureGaussianSurfaceMeshVisual = StructureGaussianSurfaceMeshVisual;
 //
 var GaussianSurfaceName = 'gaussian-surface';
 function createGaussianSurfaceTextureMesh(ctx, unit, structure, theme, props, textureMesh) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _a, namedTextures, resources, _b, colorBufferFloat, textureFloat, colorBufferHalfFloat, textureHalfFloat, densityTextureData, isoLevel, axisOrder, buffer, gv, boundingSphere, surface;
-        return (0, tslib_1.__generator)(this, function (_c) {
+        return tslib_1.__generator(this, function (_c) {
             switch (_c.label) {
                 case 0:
                     if (!ctx.webgl)
@@ -232,7 +232,7 @@ function createGaussianSurfaceTextureMesh(ctx, unit, structure, theme, props, te
                     axisOrder = linear_algebra_1.Vec3.create(0, 1, 2);
                     buffer = textureMesh === null || textureMesh === void 0 ? void 0 : textureMesh.doubleBuffer.get();
                     gv = (0, isosurface_1.extractIsosurface)(ctx.webgl, densityTextureData.texture, densityTextureData.gridDim, densityTextureData.gridTexDim, densityTextureData.gridTexScale, densityTextureData.transform, isoLevel, false, true, axisOrder, buffer === null || buffer === void 0 ? void 0 : buffer.vertex, buffer === null || buffer === void 0 ? void 0 : buffer.group, buffer === null || buffer === void 0 ? void 0 : buffer.normal);
-                    boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, props.radiusOffset + (0, common_1.getStructureExtraRadius)(structure));
+                    boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, densityTextureData.maxRadius);
                     surface = texture_mesh_1.TextureMesh.create(gv.vertexCount, 1, gv.vertexTexture, gv.groupTexture, gv.normalTexture, boundingSphere, textureMesh);
                     surface.meta.resolution = densityTextureData.resolution;
                     return [2 /*return*/, surface];
@@ -294,9 +294,9 @@ function GaussianSurfaceTextureMeshVisual(materialId) {
 exports.GaussianSurfaceTextureMeshVisual = GaussianSurfaceTextureMeshVisual;
 //
 function createStructureGaussianSurfaceTextureMesh(ctx, structure, theme, props, textureMesh) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
         var _a, namedTextures, resources, _b, colorBufferFloat, textureFloat, colorBufferHalfFloat, textureHalfFloat, densityTextureData, isoLevel, axisOrder, buffer, gv, boundingSphere, surface;
-        return (0, tslib_1.__generator)(this, function (_c) {
+        return tslib_1.__generator(this, function (_c) {
             switch (_c.label) {
                 case 0:
                     if (!ctx.webgl)
@@ -316,7 +316,7 @@ function createStructureGaussianSurfaceTextureMesh(ctx, structure, theme, props,
                     axisOrder = linear_algebra_1.Vec3.create(0, 1, 2);
                     buffer = textureMesh === null || textureMesh === void 0 ? void 0 : textureMesh.doubleBuffer.get();
                     gv = (0, isosurface_1.extractIsosurface)(ctx.webgl, densityTextureData.texture, densityTextureData.gridDim, densityTextureData.gridTexDim, densityTextureData.gridTexScale, densityTextureData.transform, isoLevel, false, true, axisOrder, buffer === null || buffer === void 0 ? void 0 : buffer.vertex, buffer === null || buffer === void 0 ? void 0 : buffer.group, buffer === null || buffer === void 0 ? void 0 : buffer.normal);
-                    boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, props.radiusOffset + (0, common_1.getStructureExtraRadius)(structure));
+                    boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, densityTextureData.maxRadius);
                     surface = texture_mesh_1.TextureMesh.create(gv.vertexCount, 1, gv.vertexTexture, gv.groupTexture, gv.normalTexture, boundingSphere, textureMesh);
                     surface.meta.resolution = densityTextureData.resolution;
                     return [2 /*return*/, surface];

package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -14,17 +14,16 @@ var algorithm_1 = require("../../../mol-geo/util/marching-cubes/algorithm");
 var units_visual_1 = require("../units-visual");
 var element_1 = require("./util/element");
 var geometry_1 = require("../../../mol-math/geometry");
-var common_1 = require("./util/common");
 function createGaussianWireframe(ctx, unit, structure, theme, props, lines) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var smoothness, _a, transform, field, idField, params, wireframe, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        var smoothness, _a, transform, field, idField, maxRadius, params, wireframe, sphere;
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0:
                     smoothness = props.smoothness;
                     return [4 /*yield*/, (0, gaussian_1.computeUnitGaussianDensity)(structure, unit, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
-                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField;
+                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, maxRadius = _a.maxRadius;
                     params = {
                         isoLevel: Math.exp(-smoothness),
                         scalarField: field,
@@ -34,14 +33,14 @@ function createGaussianWireframe(ctx, unit, structure, theme, props, lines) {
                 case 2:
                     wireframe = _b.sent();
                     lines_1.Lines.transform(wireframe, transform);
-                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, props.radiusOffset + (0, common_1.getUnitExtraRadius)(unit));
+                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, maxRadius);
                     wireframe.setBoundingSphere(sphere);
                     return [2 /*return*/, wireframe];
             }
         });
     });
 }
-exports.GaussianWireframeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsLinesParams), gaussian_1.GaussianDensityParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(3, { min: 0, max: 10, step: 0.1 }), lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(false), ignoreHydrogens: param_definition_1.ParamDefinition.Boolean(false), includeParent: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) });
+exports.GaussianWireframeParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsLinesParams), gaussian_1.GaussianDensityParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(3, { min: 0, max: 10, step: 0.1 }), lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(false), ignoreHydrogens: param_definition_1.ParamDefinition.Boolean(false), includeParent: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) });
 function GaussianWireframeVisual(materialId) {
     return (0, units_visual_1.UnitsLinesVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.GaussianWireframeParams),

package/lib/commonjs/mol-repr/structure/visual/label-text.js

@@ -16,7 +16,7 @@ var element_1 = require("./util/element");
 var names_1 = require("../../../mol-util/color/names");
 var linear_algebra_1 = require("../../../mol-math/linear-algebra");
 var boundary_helper_1 = require("../../../mol-math/geometry/boundary-helper");
-exports.LabelTextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, complex_visual_1.ComplexTextParams), { background: param_definition_1.ParamDefinition.Boolean(false), backgroundMargin: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }), backgroundColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.black), backgroundOpacity: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 1, step: 0.01 }), borderWidth: param_definition_1.ParamDefinition.Numeric(0.25, { min: 0, max: 0.5, step: 0.01 }), level: param_definition_1.ParamDefinition.Select('residue', [['chain', 'Chain'], ['residue', 'Residue'], ['element', 'Element']], { isEssential: true }), chainScale: param_definition_1.ParamDefinition.Numeric(10, { min: 0, max: 20, step: 0.1 }), residueScale: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 20, step: 0.1 }), elementScale: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 20, step: 0.1 }) });
+exports.LabelTextParams = tslib_1.__assign(tslib_1.__assign({}, complex_visual_1.ComplexTextParams), { background: param_definition_1.ParamDefinition.Boolean(false), backgroundMargin: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 1, step: 0.01 }), backgroundColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.black), backgroundOpacity: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 1, step: 0.01 }), borderWidth: param_definition_1.ParamDefinition.Numeric(0.25, { min: 0, max: 0.5, step: 0.01 }), level: param_definition_1.ParamDefinition.Select('residue', [['chain', 'Chain'], ['residue', 'Residue'], ['element', 'Element']], { isEssential: true }), chainScale: param_definition_1.ParamDefinition.Numeric(10, { min: 0, max: 20, step: 0.1 }), residueScale: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 20, step: 0.1 }), elementScale: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0, max: 20, step: 0.1 }) });
 function LabelTextVisual(materialId) {
     return (0, complex_visual_1.ComplexTextVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.LabelTextParams),

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js

@@ -18,16 +18,16 @@ var common_1 = require("./util/common");
 var geometry_1 = require("../../../mol-math/geometry");
 var color_smoothing_1 = require("../../../mol-geo/geometry/mesh/color-smoothing");
 var base_1 = require("../../../mol-geo/geometry/base");
-exports.MolecularSurfaceMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), base_1.ColorSmoothingParams);
+exports.MolecularSurfaceMeshParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), base_1.ColorSmoothingParams);
 //
 function createMolecularSurfaceMesh(ctx, unit, structure, theme, props, mesh) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var _a, transform, field, idField, resolution, params, surface, iterations, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        var _a, transform, field, idField, resolution, maxRadius, params, surface, iterations, sphere;
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0: return [4 /*yield*/, (0, molecular_surface_2.computeUnitMolecularSurface)(structure, unit, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
-                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, resolution = _a.resolution;
+                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, resolution = _a.resolution, maxRadius = _a.maxRadius;
                     params = {
                         isoLevel: props.probeRadius,
                         scalarField: field,
@@ -43,7 +43,7 @@ function createMolecularSurfaceMesh(ctx, unit, structure, theme, props, mesh) {
                     mesh_1.Mesh.transform(surface, transform);
                     if (ctx.webgl && !ctx.webgl.isWebGL2)
                         mesh_1.Mesh.uniformTriangleGroup(surface);
-                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, (0, common_1.getUnitExtraRadius)(unit));
+                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, maxRadius);
                     surface.setBoundingSphere(sphere);
                     surface.meta.resolution = resolution;
                     return [2 /*return*/, surface];

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -16,16 +16,16 @@ var algorithm_1 = require("../../../mol-geo/util/marching-cubes/algorithm");
 var element_1 = require("./util/element");
 var common_1 = require("./util/common");
 var geometry_1 = require("../../../mol-math/geometry");
-exports.MolecularSurfaceWireframeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsLinesParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0, max: 10, step: 0.1 }) });
+exports.MolecularSurfaceWireframeParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsLinesParams), molecular_surface_1.MolecularSurfaceCalculationParams), common_1.CommonSurfaceParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0, max: 10, step: 0.1 }) });
 //
 function createMolecularSurfaceWireframe(ctx, unit, structure, theme, props, lines) {
-    return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
-        var _a, transform, field, idField, params, wireframe, sphere;
-        return (0, tslib_1.__generator)(this, function (_b) {
+    return tslib_1.__awaiter(this, void 0, void 0, function () {
+        var _a, transform, field, idField, maxRadius, params, wireframe, sphere;
+        return tslib_1.__generator(this, function (_b) {
             switch (_b.label) {
                 case 0: return [4 /*yield*/, (0, molecular_surface_2.computeUnitMolecularSurface)(structure, unit, theme.size, props).runInContext(ctx.runtime)];
                 case 1:
-                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField;
+                    _a = _b.sent(), transform = _a.transform, field = _a.field, idField = _a.idField, maxRadius = _a.maxRadius;
                     params = {
                         isoLevel: props.probeRadius,
                         scalarField: field,
@@ -35,7 +35,7 @@ function createMolecularSurfaceWireframe(ctx, unit, structure, theme, props, lin
                 case 2:
                     wireframe = _b.sent();
                     lines_1.Lines.transform(wireframe, transform);
-                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, props.probeRadius + (0, common_1.getUnitExtraRadius)(unit));
+                    sphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, maxRadius);
                     wireframe.setBoundingSphere(sphere);
                     return [2 /*return*/, wireframe];
             }

package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.js

@@ -130,7 +130,7 @@ function createNucleotideBlockMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.NucleotideBlockParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.NucleotideBlockMeshParams);
+exports.NucleotideBlockParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.NucleotideBlockMeshParams);
 function NucleotideBlockVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.NucleotideBlockParams),

package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.js

@@ -184,7 +184,7 @@ function createNucleotideRingMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.NucleotideRingParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.NucleotideRingMeshParams);
+exports.NucleotideRingParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.NucleotideRingMeshParams);
 function NucleotideRingVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.NucleotideRingParams),

package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js

@@ -19,7 +19,7 @@ var int_1 = require("../../../mol-data/int");
 var loci_1 = require("../../../mol-model/loci");
 var location_iterator_1 = require("../../../mol-geo/util/location-iterator");
 var base_1 = require("../../../mol-geo/geometry/base");
-exports.OrientationEllipsoidMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 2, step: 0.1 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo) });
+exports.OrientationEllipsoidMeshParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 2, step: 0.1 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo) });
 function OrientationEllipsoidMeshVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.OrientationEllipsoidMeshParams),

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.js

@@ -25,7 +25,7 @@ var backbone_1 = require("./util/polymer/backbone");
 var v3scale = linear_algebra_1.Vec3.scale;
 var v3add = linear_algebra_1.Vec3.add;
 var v3sub = linear_algebra_1.Vec3.sub;
-exports.PolymerBackboneCylinderParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsCylindersParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), radialSegments: param_definition_1.ParamDefinition.Numeric(16, { min: 2, max: 56, step: 2 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
+exports.PolymerBackboneCylinderParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsCylindersParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), radialSegments: param_definition_1.ParamDefinition.Numeric(16, { min: 2, max: 56, step: 2 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
 function PolymerBackboneCylinderVisual(materialId, structure, props, webgl) {
     return props.tryUseImpostor && webgl && webgl.extensions.fragDepth
         ? PolymerBackboneCylinderImpostorVisual(materialId)

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.js

@@ -21,7 +21,7 @@ var sphere_2 = require("../../../mol-geo/primitive/sphere");
 var spheres_1 = require("../../../mol-geo/geometry/spheres/spheres");
 var spheres_builder_1 = require("../../../mol-geo/geometry/spheres/spheres-builder");
 var backbone_1 = require("./util/polymer/backbone");
-exports.PolymerBackboneSphereParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsSpheresParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
+exports.PolymerBackboneSphereParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsSpheresParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.3, { min: 0, max: 10, step: 0.01 }), detail: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 3, step: 1 }, base_1.BaseGeometry.CustomQualityParamInfo), tryUseImpostor: param_definition_1.ParamDefinition.Boolean(true) });
 function PolymerBackboneSphereVisual(materialId, structure, props, webgl) {
     return props.tryUseImpostor && webgl && webgl.extensions.fragDepth
         ? PolymerBackboneSphereImpostorVisual(materialId)

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js

@@ -71,7 +71,7 @@ function createPolymerDirectionWedgeMesh(ctx, unit, structure, theme, props, mes
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerDirectionParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerDirectionWedgeParams);
+exports.PolymerDirectionParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerDirectionWedgeParams);
 function PolymerDirectionVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerDirectionParams),

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.js

@@ -71,7 +71,7 @@ function createPolymerGapCylinderMesh(ctx, unit, structure, theme, props, mesh)
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerGapParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerGapCylinderParams);
+exports.PolymerGapParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerGapCylinderParams);
 function PolymerGapVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerGapParams),

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js

@@ -162,7 +162,7 @@ function createPolymerTraceMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerTraceParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerTraceMeshParams);
+exports.PolymerTraceParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerTraceMeshParams);
 function PolymerTraceVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerTraceParams),

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js

@@ -91,7 +91,7 @@ function createPolymerTubeMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(sphere);
     return m;
 }
-exports.PolymerTubeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, units_visual_1.UnitsMeshParams), exports.PolymerTubeMeshParams);
+exports.PolymerTubeParams = tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), exports.PolymerTubeMeshParams);
 function PolymerTubeVisual(materialId) {
     return (0, units_visual_1.UnitsMeshVisual)({
         defaultProps: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerTubeParams),

package/lib/commonjs/mol-repr/structure/visual/util/bond.js

@@ -24,9 +24,9 @@ exports.BondParams = {
     multipleBonds: param_definition_1.ParamDefinition.Select('symmetric', param_definition_1.ParamDefinition.arrayToOptions(['off', 'symmetric', 'offset'])),
 };
 exports.DefaultBondProps = param_definition_1.ParamDefinition.getDefaultValues(exports.BondParams);
-exports.BondCylinderParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, link_1.LinkCylinderParams), exports.BondParams), { adjustCylinderLength: param_definition_1.ParamDefinition.Boolean(false, { description: 'Shorten cylinders to reduce overlap with spheres. Useful for for transparent bonds. Not working well with aromatic bonds.' }) });
+exports.BondCylinderParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, link_1.LinkCylinderParams), exports.BondParams), { adjustCylinderLength: param_definition_1.ParamDefinition.Boolean(false, { description: 'Shorten cylinders to reduce overlap with spheres. Useful for for transparent bonds. Not working well with aromatic bonds.' }) });
 exports.DefaultBondCylinderProps = param_definition_1.ParamDefinition.getDefaultValues(exports.BondCylinderParams);
-exports.BondLineParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, link_1.LinkLineParams), exports.BondParams);
+exports.BondLineParams = tslib_1.__assign(tslib_1.__assign({}, link_1.LinkLineParams), exports.BondParams);
 exports.DefaultBondLineProps = param_definition_1.ParamDefinition.getDefaultValues(exports.BondLineParams);
 function ignoreBondType(include, exclude, f) {
     return !types_1.BondType.is(include, f) || types_1.BondType.is(exclude, f);

package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -85,5 +85,3 @@ export declare function getStructureConformationAndRadius(structure: Structure,
 export declare function isHydrogen(unit: Unit, element: ElementIndex): boolean;
 export declare function isH(atomicNumber: ArrayLike<number>, element: ElementIndex): boolean;
 export declare function isTrace(unit: Unit, element: ElementIndex): boolean;
-export declare function getUnitExtraRadius(unit: Unit): number;
-export declare function getStructureExtraRadius(structure: Structure): number;

package/lib/commonjs/mol-repr/structure/visual/util/common.js

@@ -1,11 +1,11 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getStructureExtraRadius = exports.getUnitExtraRadius = exports.isTrace = exports.isH = exports.isHydrogen = exports.getStructureConformationAndRadius = exports.getUnitConformationAndRadius = exports.DefaultCommonSurfaceProps = exports.CommonSurfaceParams = exports.getConformation = exports.ensureReasonableResolution = exports.getVolumeSliceInfo = exports.includesUnitKind = exports.UnitKindOptions = exports.UnitKindInfo = exports.createUnitsTransform = exports.getAltResidueLociFromId = exports.getAltResidueLoci = exports.getResidueLoci = void 0;
+exports.isTrace = exports.isH = exports.isHydrogen = exports.getStructureConformationAndRadius = exports.getUnitConformationAndRadius = exports.DefaultCommonSurfaceProps = exports.CommonSurfaceParams = exports.getConformation = exports.ensureReasonableResolution = exports.getVolumeSliceInfo = exports.includesUnitKind = exports.UnitKindOptions = exports.UnitKindInfo = exports.createUnitsTransform = exports.getAltResidueLociFromId = exports.getAltResidueLoci = exports.getResidueLoci = void 0;
 var tslib_1 = require("tslib");
 var structure_1 = require("../../../../mol-model/structure");
 var linear_algebra_1 = require("../../../../mol-math/linear-algebra");
@@ -123,7 +123,7 @@ function ensureReasonableResolution(box, props, maxCells) {
     if (maxCells === void 0) { maxCells = DefaultMaxCells; }
     var _a = getVolumeSliceInfo(box, props.resolution, maxCells), area = _a.area, areaCells = _a.areaCells, maxAreaCells = _a.maxAreaCells;
     var resolution = areaCells > maxAreaCells ? Math.sqrt(area / maxAreaCells) : props.resolution;
-    return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props), { resolution: resolution });
+    return tslib_1.__assign(tslib_1.__assign({}, props), { resolution: resolution });
 }
 exports.ensureReasonableResolution = ensureReasonableResolution;
 function getConformation(unit) {
@@ -289,28 +289,3 @@ function isTrace(unit, element) {
     return false;
 }
 exports.isTrace = isTrace;
-function getUnitExtraRadius(unit) {
-    if (structure_1.Unit.isAtomic(unit))
-        return 4;
-    var max = 0;
-    var elements = unit.elements;
-    var r = unit.conformation.r;
-    for (var i = 0, _i = elements.length; i < _i; i++) {
-        var _r = r(elements[i]);
-        if (_r > max)
-            max = _r;
-    }
-    return max + 1;
-}
-exports.getUnitExtraRadius = getUnitExtraRadius;
-function getStructureExtraRadius(structure) {
-    var max = 0;
-    for (var _a = 0, _b = structure.unitSymmetryGroups; _a < _b.length; _a++) {
-        var ug = _b[_a];
-        var r = getUnitExtraRadius(ug.units[0]);
-        if (r > max)
-            max = r;
-    }
-    return max;
-}
-exports.getStructureExtraRadius = getStructureExtraRadius;

package/lib/commonjs/mol-repr/structure/visual/util/element.js

@@ -20,6 +20,8 @@ var spheres_1 = require("../../../../mol-geo/geometry/spheres/spheres");
 var spheres_builder_1 = require("../../../../mol-geo/geometry/spheres/spheres-builder");
 var common_1 = require("./common");
 var geometry_1 = require("../../../../mol-math/geometry");
+// avoiding namespace lookup improved performance in Chrome (Aug 2020)
+var v3add = linear_algebra_1.Vec3.add;
 function makeElementIgnoreTest(structure, unit, props) {
     var ignoreHydrogens = props.ignoreHydrogens, traceOnly = props.traceOnly;
     var atomicNumber = unit.model.atomicHierarchy.derived.atom.atomicNumber;
@@ -52,20 +54,36 @@ function createElementSphereMesh(ctx, unit, structure, theme, props, mesh) {
     var ignore = makeElementIgnoreTest(structure, unit, props);
     var l = structure_1.StructureElement.Location.create(structure, unit);
     var themeSize = theme.size.size;
+    var center = (0, linear_algebra_1.Vec3)();
     var maxSize = 0;
+    var count = 0;
     for (var i = 0; i < elementCount; i++) {
         if (ignore && ignore(elements[i]))
             continue;
         l.element = elements[i];
         pos(elements[i], v);
+        v3add(center, center, v);
+        count += 1;
         builderState.currentGroup = i;
         var size = themeSize(l);
         if (size > maxSize)
             maxSize = size;
         (0, sphere_2.addSphere)(builderState, v, size * sizeFactor, detail);
     }
+    var oldBoundingSphere = mesh ? geometry_1.Sphere3D.clone(mesh.boundingSphere) : undefined;
     var m = mesh_builder_1.MeshBuilder.getMesh(builderState);
-    m.setBoundingSphere(geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * sizeFactor + 0.05));
+    if (count === 0)
+        return m;
+    // re-use boundingSphere if it has not changed much
+    var boundingSphere;
+    linear_algebra_1.Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
+    }
+    else {
+        boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * sizeFactor + 0.05);
+    }
+    m.setBoundingSphere(boundingSphere);
     return m;
 }
 exports.createElementSphereMesh = createElementSphereMesh;
@@ -82,19 +100,35 @@ function createElementSphereImpostor(ctx, unit, structure, theme, props, spheres
     var ignore = makeElementIgnoreTest(structure, unit, props);
     var l = structure_1.StructureElement.Location.create(structure, unit);
     var themeSize = theme.size.size;
+    var center = (0, linear_algebra_1.Vec3)();
     var maxSize = 0;
+    var count = 0;
     for (var i = 0; i < elementCount; i++) {
         if (ignore === null || ignore === void 0 ? void 0 : ignore(elements[i]))
             continue;
         pos(elements[i], v);
         builder.add(v[0], v[1], v[2], i);
+        v3add(center, center, v);
+        count += 1;
         l.element = elements[i];
         var size = themeSize(l);
         if (size > maxSize)
             maxSize = size;
     }
+    var oldBoundingSphere = spheres ? geometry_1.Sphere3D.clone(spheres.boundingSphere) : undefined;
     var s = builder.getSpheres();
-    s.setBoundingSphere(geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * props.sizeFactor + 0.05));
+    if (count === 0)
+        return s;
+    // re-use boundingSphere if it has not changed much
+    var boundingSphere;
+    linear_algebra_1.Vec3.scale(center, center, 1 / count);
+    if (oldBoundingSphere && linear_algebra_1.Vec3.distance(center, oldBoundingSphere.center) / oldBoundingSphere.radius < 1.0) {
+        boundingSphere = oldBoundingSphere;
+    }
+    else {
+        boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), (childUnit !== null && childUnit !== void 0 ? childUnit : unit).boundary.sphere, maxSize * props.sizeFactor + 0.05);
+    }
+    s.setBoundingSphere(boundingSphere);
     return s;
 }
 exports.createElementSphereImpostor = createElementSphereImpostor;

package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js

@@ -13,7 +13,7 @@ var gpu_1 = require("../../../../mol-math/geometry/gaussian-density/gpu");
 var common_1 = require("./common");
 var base_1 = require("../../../../mol-geo/geometry/base");
 var cpu_1 = require("../../../../mol-math/geometry/gaussian-density/cpu");
-exports.GaussianDensityParams = (0, tslib_1.__assign)({ resolution: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 20, step: 0.1 }, (0, tslib_1.__assign)({ description: 'Grid resolution/cell spacing.' }, base_1.BaseGeometry.CustomQualityParamInfo)), radiusOffset: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, { description: 'Extra/offset radius added to the atoms/coarse elements for gaussian calculation. Useful to create coarse, low resolution surfaces.' }), smoothness: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0.5, max: 2.5, step: 0.1 }, { description: 'Smoothness of the gausian surface, lower is smoother.' }) }, common_1.CommonSurfaceParams);
+exports.GaussianDensityParams = tslib_1.__assign({ resolution: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 20, step: 0.1 }, tslib_1.__assign({ description: 'Grid resolution/cell spacing.' }, base_1.BaseGeometry.CustomQualityParamInfo)), radiusOffset: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, { description: 'Extra/offset radius added to the atoms/coarse elements for gaussian calculation. Useful to create coarse, low resolution surfaces.' }), smoothness: param_definition_1.ParamDefinition.Numeric(1.5, { min: 0.5, max: 2.5, step: 0.1 }, { description: 'Smoothness of the gausian surface, lower is smoother.' }) }, common_1.CommonSurfaceParams);
 exports.DefaultGaussianDensityProps = param_definition_1.ParamDefinition.getDefaultValues(exports.GaussianDensityParams);
 //
 function getTextureMaxCells(webgl, structure) {
@@ -27,8 +27,8 @@ function computeUnitGaussianDensity(structure, unit, sizeTheme, props) {
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props);
     var _a = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, p), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, cpu_1.GaussianDensityCPU)(ctx, position, box, radius, p)];
                 case 1: return [2 /*return*/, _a.sent()];
@@ -42,8 +42,8 @@ function computeUnitGaussianDensityTexture(structure, unit, sizeTheme, props, we
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl, structure));
     var _a = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, p), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture)(webgl, position, box, radius, p, texture)];
         });
     }); });
@@ -54,8 +54,8 @@ function computeUnitGaussianDensityTexture2d(structure, unit, sizeTheme, powerOf
     var box = unit.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl, structure));
     var _a = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, p), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture2d)(webgl, position, box, radius, powerOfTwo, p, texture)];
         });
     }); });
@@ -67,8 +67,8 @@ function computeStructureGaussianDensity(structure, sizeTheme, props) {
     var box = structure.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props);
     var _a = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props.ignoreHydrogens, props.traceOnly), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0: return [4 /*yield*/, (0, cpu_1.GaussianDensityCPU)(ctx, position, box, radius, p)];
                 case 1: return [2 /*return*/, _a.sent()];
@@ -82,8 +82,8 @@ function computeStructureGaussianDensityTexture(structure, sizeTheme, props, web
     var box = structure.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl));
     var _a = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props.ignoreHydrogens, props.traceOnly), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture)(webgl, position, box, radius, p, texture)];
         });
     }); });
@@ -94,8 +94,8 @@ function computeStructureGaussianDensityTexture2d(structure, sizeTheme, powerOfT
     var box = structure.lookup3d.boundary.box;
     var p = (0, common_1.ensureReasonableResolution)(box, props, getTextureMaxCells(webgl));
     var _a = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props.ignoreHydrogens, props.traceOnly), position = _a.position, radius = _a.radius;
-    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
-        return (0, tslib_1.__generator)(this, function (_a) {
+    return mol_task_1.Task.create('Gaussian Density', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
+        return tslib_1.__generator(this, function (_a) {
             return [2 /*return*/, (0, gpu_1.GaussianDensityTexture2d)(webgl, position, box, radius, powerOfTwo, p, texture)];
         });
     }); });