molstar 3.3.0 → 3.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (905) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/docking-viewer/viewport.js +1 -1
  8. package/lib/apps/viewer/app.d.ts +7 -6
  9. package/lib/apps/viewer/app.js +2 -0
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.html +106 -106
  12. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  13. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  14. package/lib/cli/cif2bcif/converter.js +1 -1
  15. package/lib/cli/cif2bcif/index.js +4 -4
  16. package/lib/commonjs/apps/docking-viewer/index.js +12 -12
  17. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  18. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  19. package/lib/commonjs/apps/viewer/app.js +24 -22
  20. package/lib/commonjs/apps/viewer/index.js +1 -1
  21. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  22. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  23. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  24. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  25. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  26. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  27. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  28. package/lib/commonjs/cli/cifschema/index.js +27 -27
  29. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -1
  30. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  31. package/lib/commonjs/cli/state-docs/index.js +2 -2
  32. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  33. package/lib/commonjs/cli/structure-info/model.js +15 -15
  34. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  35. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  36. package/lib/commonjs/examples/alpha-orbitals/index.js +11 -11
  37. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  38. package/lib/commonjs/examples/basic-wrapper/index.js +22 -22
  39. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  40. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  41. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  42. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  43. package/lib/commonjs/examples/lighting/index.js +6 -6
  44. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  45. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  46. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -26
  47. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  48. package/lib/commonjs/examples/task.js +15 -15
  49. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  50. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  51. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  52. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  53. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  54. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  55. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  56. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  57. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  58. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  59. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  60. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  61. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  62. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  63. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  64. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  65. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  66. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  67. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  68. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  69. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  70. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  71. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  72. package/lib/commonjs/extensions/g3d/data.js +6 -6
  73. package/lib/commonjs/extensions/g3d/format.js +14 -14
  74. package/lib/commonjs/extensions/g3d/model.js +4 -4
  75. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  76. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  77. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  78. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  79. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  80. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  81. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  82. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  83. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  84. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  85. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  86. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  87. package/lib/commonjs/extensions/model-export/export.js +4 -4
  88. package/lib/commonjs/extensions/model-export/index.js +1 -1
  89. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  90. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  91. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  92. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  93. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  94. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  95. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  96. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  97. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  98. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  99. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  100. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  101. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  102. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  103. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  104. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  105. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +22 -5
  106. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  107. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  108. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  109. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  110. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  111. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  112. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  113. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  114. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  115. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  116. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  117. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  118. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  119. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  120. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  121. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  122. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  123. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  124. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  125. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  126. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  127. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  128. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  129. package/lib/commonjs/mol-data/db/column.js +2 -2
  130. package/lib/commonjs/mol-data/db/table.js +1 -1
  131. package/lib/commonjs/mol-data/db.js +1 -1
  132. package/lib/commonjs/mol-data/generic.js +3 -3
  133. package/lib/commonjs/mol-data/index.js +4 -4
  134. package/lib/commonjs/mol-data/int/interval.js +1 -1
  135. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  136. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  137. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  138. package/lib/commonjs/mol-data/util.js +7 -7
  139. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  140. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -3
  141. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  142. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  143. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  144. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  145. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  146. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  147. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  148. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -3
  149. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  150. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  151. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  152. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -3
  153. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  154. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  155. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  156. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  157. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  158. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -3
  159. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  160. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  161. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  162. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  163. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  164. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  165. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  166. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  167. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  168. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  169. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  170. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  171. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  172. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  173. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  174. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  175. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  176. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  177. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  178. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  179. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  180. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  182. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  183. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  184. package/lib/commonjs/mol-gl/webgl/buffer.js +4 -5
  185. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  186. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  187. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  188. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  189. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  190. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  191. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  192. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  193. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  194. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  195. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  196. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  197. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  198. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  199. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  200. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  201. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  202. package/lib/commonjs/mol-io/reader/cif/schema.js +2 -2
  203. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  204. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  205. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  206. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  207. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  208. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  209. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  210. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  211. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  212. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  213. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  214. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  215. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  216. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  217. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  218. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  219. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  220. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  221. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  222. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  223. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  224. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  225. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  226. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  227. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  228. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  229. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  230. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  231. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  232. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  233. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  234. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  235. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  236. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  237. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  238. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
  239. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +6 -6
  240. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
  241. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +8 -8
  242. package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +2 -2
  243. package/lib/commonjs/mol-math/geometry/gaussian-density.js +5 -5
  244. package/lib/commonjs/mol-math/geometry/molecular-surface.d.ts +2 -1
  245. package/lib/commonjs/mol-math/geometry/molecular-surface.js +10 -10
  246. package/lib/commonjs/mol-math/geometry/primitives/box3d.js +2 -1
  247. package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +13 -7
  248. package/lib/commonjs/mol-math/geometry.js +8 -8
  249. package/lib/commonjs/mol-math/graph/inter-unit-graph.js +1 -1
  250. package/lib/commonjs/mol-math/graph.js +1 -1
  251. package/lib/commonjs/mol-math/linear-algebra.js +2 -2
  252. package/lib/commonjs/mol-model/sequence/alignment/alignment.js +1 -1
  253. package/lib/commonjs/mol-model/sequence/sequence.js +2 -1
  254. package/lib/commonjs/mol-model/sequence.js +1 -1
  255. package/lib/commonjs/mol-model/shape.js +1 -1
  256. package/lib/commonjs/mol-model/structure/coordinates.js +1 -1
  257. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  258. package/lib/commonjs/mol-model/structure/model/model.js +3 -3
  259. package/lib/commonjs/mol-model/structure/model/properties/atomic.js +3 -3
  260. package/lib/commonjs/mol-model/structure/model/properties/coarse.js +2 -2
  261. package/lib/commonjs/mol-model/structure/model/types/saccharides.d.ts +8 -0
  262. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +11 -0
  263. package/lib/commonjs/mol-model/structure/model.js +3 -3
  264. package/lib/commonjs/mol-model/structure/query/queries/generators.js +2 -2
  265. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +2 -2
  266. package/lib/commonjs/mol-model/structure/query.js +6 -6
  267. package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
  268. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +1 -1
  269. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +6 -9
  270. package/lib/commonjs/mol-model/structure/structure/element/element.js +5 -5
  271. package/lib/commonjs/mol-model/structure/structure/element.js +1 -1
  272. package/lib/commonjs/mol-model/structure/structure/structure.js +9 -6
  273. package/lib/commonjs/mol-model/structure/structure/symmetry.js +10 -10
  274. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +2 -2
  275. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -0
  276. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +6 -4
  277. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  278. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +3 -3
  279. package/lib/commonjs/mol-model/structure/structure/unit.js +5 -22
  280. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +1 -1
  281. package/lib/commonjs/mol-model/structure/structure.js +2 -2
  282. package/lib/commonjs/mol-model/structure/topology.js +1 -1
  283. package/lib/commonjs/mol-model/structure.js +6 -6
  284. package/lib/commonjs/mol-model/volume.js +2 -2
  285. package/lib/commonjs/mol-model-formats/shape/ply.js +7 -7
  286. package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +1 -1
  287. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -15
  288. package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +3 -3
  289. package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
  290. package/lib/commonjs/mol-model-formats/structure/basic/parser.d.ts +1 -1
  291. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +10 -10
  292. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
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  872. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.js +10 -1
  873. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +10 -1
  874. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -1
  875. package/lib/mol-repr/structure/visual/element-point.js +22 -3
  876. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
  877. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +1 -1
  878. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +10 -10
  879. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  880. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
  881. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -4
  882. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  883. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +5 -5
  884. package/lib/mol-repr/structure/visual/util/common.d.ts +1 -3
  885. package/lib/mol-repr/structure/visual/util/common.js +1 -24
  886. package/lib/mol-repr/structure/visual/util/element.js +36 -2
  887. package/lib/mol-repr/structure/visual/util/link.d.ts +13 -3
  888. package/lib/mol-repr/structure/visual/util/link.js +55 -6
  889. package/lib/mol-script/language/builder.d.ts +1 -0
  890. package/lib/mol-script/language/parser.js +7 -4
  891. package/lib/mol-task/util/scheduler.d.ts +2 -2
  892. package/lib/mol-task/util/scheduler.js +7 -7
  893. package/lib/mol-theme/color/hydrophobicity.js +2 -2
  894. package/lib/mol-util/data-source.js +2 -1
  895. package/lib/mol-util/file-info.d.ts +1 -3
  896. package/lib/mol-util/file-info.js +2 -10
  897. package/lib/mol-util/index.d.ts +1 -0
  898. package/lib/mol-util/index.js +5 -0
  899. package/lib/mol-util/zip/deflate.js +2 -1
  900. package/lib/mol-util/zip/zip.d.ts +7 -1
  901. package/lib/mol-util/zip/zip.js +5 -1
  902. package/lib/servers/model/config.d.ts +2 -2
  903. package/package.json +160 -160
  904. package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -64
  905. package/lib/mol-plugin-state/formats/structure.js +0 -61
@@ -20,7 +20,7 @@ var base_1 = require("../base");
20
20
  var parameters_1 = require("../controls/parameters");
21
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  var help_1 = require("./help");
22
22
  var SimpleSettingsControl = /** @class */ (function (_super) {
23
- (0, tslib_1.__extends)(SimpleSettingsControl, _super);
23
+ tslib_1.__extends(SimpleSettingsControl, _super);
24
24
  function SimpleSettingsControl() {
25
25
  return _super !== null && _super.apply(this, arguments) || this;
26
26
  }
@@ -36,7 +36,7 @@ var SimpleSettingsControl = /** @class */ (function (_super) {
36
36
  SimpleSettingsControl.prototype.render = function () {
37
37
  if (!this.plugin.canvas3d)
38
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  return null;
39
- return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: SimpleSettingsMapping }, void 0), (0, jsx_runtime_1.jsx)(help_1.ViewportHelpContent, {}, void 0)] }, void 0);
39
+ return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(parameters_1.ParameterMappingControl, { mapping: SimpleSettingsMapping }), (0, jsx_runtime_1.jsx)(help_1.ViewportHelpContent, {})] });
40
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  };
41
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  return SimpleSettingsControl;
42
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  }(base_1.PluginUIComponent));
@@ -58,7 +58,7 @@ var SimpleSettingsParams = {
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  outline: canvas3d_1.Canvas3DParams.postprocessing.params.outline,
59
59
  fog: canvas3d_1.Canvas3DParams.cameraFog,
60
60
  }, { isFlat: true }),
61
- clipping: param_definition_1.ParamDefinition.Group((0, tslib_1.__assign)({}, canvas3d_1.Canvas3DParams.cameraClipping.params), { pivot: 'radius' }),
61
+ clipping: param_definition_1.ParamDefinition.Group(tslib_1.__assign({}, canvas3d_1.Canvas3DParams.cameraClipping.params), { pivot: 'radius' }),
62
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  layout: param_definition_1.ParamDefinition.MultiSelect([], param_definition_1.ParamDefinition.objectToOptions(LayoutOptions)),
63
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  };
64
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  var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
@@ -108,7 +108,7 @@ var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
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  outline: canvas.postprocessing.outline,
109
109
  fog: canvas.cameraFog,
110
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  },
111
- clipping: (0, tslib_1.__assign)({}, canvas.cameraClipping)
111
+ clipping: tslib_1.__assign({}, canvas.cameraClipping)
112
112
  };
113
113
  },
114
114
  update: function (s, props) {
@@ -127,9 +127,9 @@ var SimpleSettingsMapping = (0, param_mapping_1.ParamMapping)({
127
127
  props.layout = s.layout;
128
128
  },
129
129
  apply: function (props, ctx) {
130
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
130
+ return tslib_1.__awaiter(this, void 0, void 0, function () {
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  var hideLeft, state;
132
- return (0, tslib_1.__generator)(this, function (_a) {
132
+ return tslib_1.__generator(this, function (_a) {
133
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  switch (_a.label) {
134
134
  case 0: return [4 /*yield*/, commands_1.PluginCommands.Canvas3D.SetSettings(ctx, { settings: props.canvas })];
135
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  case 1:
@@ -13,14 +13,14 @@ var canvas_1 = require("./viewport/canvas");
13
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  var screenshot_1 = require("./viewport/screenshot");
14
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  var simple_settings_1 = require("./viewport/simple-settings");
15
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  var ViewportControls = /** @class */ (function (_super) {
16
- (0, tslib_1.__extends)(ViewportControls, _super);
16
+ tslib_1.__extends(ViewportControls, _super);
17
17
  function ViewportControls() {
18
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  var _this = _super !== null && _super.apply(this, arguments) || this;
19
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  _this.allCollapsedState = {
20
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  isSettingsExpanded: false,
21
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  isScreenshotExpanded: false
22
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  };
23
- _this.state = (0, tslib_1.__assign)({}, _this.allCollapsedState);
23
+ _this.state = tslib_1.__assign({}, _this.allCollapsedState);
24
24
  _this.resetCamera = function () {
25
25
  commands_1.PluginCommands.Camera.Reset(_this.plugin, {});
26
26
  };
@@ -55,7 +55,7 @@ var ViewportControls = /** @class */ (function (_super) {
55
55
  var _this = this;
56
56
  return function (e) {
57
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  var _a;
58
- _this.setState((0, tslib_1.__assign)((0, tslib_1.__assign)({}, _this.allCollapsedState), (_a = {}, _a[panel] = !_this.state[panel], _a)));
58
+ _this.setState(tslib_1.__assign(tslib_1.__assign({}, _this.allCollapsedState), (_a = {}, _a[panel] = !_this.state[panel], _a)));
59
59
  e === null || e === void 0 ? void 0 : e.currentTarget.blur();
60
60
  };
61
61
  };
@@ -66,17 +66,17 @@ var ViewportControls = /** @class */ (function (_super) {
66
66
  };
67
67
  ViewportControls.prototype.icon = function (icon, onClick, title, isOn) {
68
68
  if (isOn === void 0) { isOn = true; }
69
- return (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icon, toggleState: isOn, onClick: onClick, title: title, style: { background: 'transparent' } }, void 0);
69
+ return (0, jsx_runtime_1.jsx)(common_1.IconButton, { svg: icon, toggleState: isOn, onClick: onClick, title: title, style: { background: 'transparent' } });
70
70
  };
71
71
  ViewportControls.prototype.render = function () {
72
- return (0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls', onMouseMove: this.onMouseMove }, { children: [(0, jsx_runtime_1.jsxs)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-buttons' }, { children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.icon(icons_1.AutorenewSvg, this.resetCamera, 'Reset Camera')] }, void 0), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.icon(icons_1.CameraOutlinedSvg, this.toggleScreenshotExpanded, 'Screenshot / State Snapshot', this.state.isScreenshotExpanded)] }, void 0), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowControls) && this.icon(icons_1.BuildOutlinedSvg, this.toggleControls, 'Toggle Controls Panel', this.plugin.layout.state.showControls), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowExpand) && this.icon(icons_1.FullscreenSvg, this.toggleExpanded, 'Toggle Expanded Viewport', this.plugin.layout.state.isExpanded), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSettings) && this.icon(icons_1.TuneSvg, this.toggleSettingsExpanded, 'Settings / Controls Info', this.state.isSettingsExpanded)] }, void 0), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSelectionMode) && (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }, void 0), (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, {}, void 0)] }, void 0)] }), void 0), this.state.isScreenshotExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: 'Screenshot / State', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleScreenshotExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(screenshot_1.DownloadScreenshotControls, { close: this.toggleScreenshotExpanded }, void 0) }), void 0) }), void 0), this.state.isSettingsExpanded && (0, jsx_runtime_1.jsx)("div", (0, tslib_1.__assign)({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, (0, tslib_1.__assign)({ header: 'Settings / Controls Info', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleSettingsExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(simple_settings_1.SimpleSettingsControl, {}, void 0) }), void 0) }), void 0)] }), void 0);
72
+ return (0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-viewport-controls', onMouseMove: this.onMouseMove }, { children: [(0, jsx_runtime_1.jsxs)("div", tslib_1.__assign({ className: 'msp-viewport-controls-buttons' }, { children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.icon(icons_1.AutorenewSvg, this.resetCamera, 'Reset Camera')] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.icon(icons_1.CameraOutlinedSvg, this.toggleScreenshotExpanded, 'Screenshot / State Snapshot', this.state.isScreenshotExpanded)] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowControls) && this.icon(icons_1.BuildOutlinedSvg, this.toggleControls, 'Toggle Controls Panel', this.plugin.layout.state.showControls), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowExpand) && this.icon(icons_1.FullscreenSvg, this.toggleExpanded, 'Toggle Expanded Viewport', this.plugin.layout.state.isExpanded), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSettings) && this.icon(icons_1.TuneSvg, this.toggleSettingsExpanded, 'Settings / Controls Info', this.state.isSettingsExpanded)] }), this.plugin.config.get(config_1.PluginConfig.Viewport.ShowSelectionMode) && (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)("div", { className: 'msp-semi-transparent-background' }), (0, jsx_runtime_1.jsx)(selection_1.ToggleSelectionModeButton, {})] })] })), this.state.isScreenshotExpanded && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, tslib_1.__assign({ header: 'Screenshot / State', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleScreenshotExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(screenshot_1.DownloadScreenshotControls, { close: this.toggleScreenshotExpanded }) })) })), this.state.isSettingsExpanded && (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-viewport-controls-panel' }, { children: (0, jsx_runtime_1.jsx)(common_1.ControlGroup, tslib_1.__assign({ header: 'Settings / Controls Info', title: 'Click to close.', initialExpanded: true, hideExpander: true, hideOffset: true, onHeaderClick: this.toggleSettingsExpanded, topRightIcon: icons_1.CloseSvg, noTopMargin: true, childrenClassName: 'msp-viewport-controls-panel-controls' }, { children: (0, jsx_runtime_1.jsx)(simple_settings_1.SimpleSettingsControl, {}) })) }))] }));
73
73
  };
74
74
  return ViewportControls;
75
75
  }(base_1.PluginUIComponent));
76
76
  exports.ViewportControls = ViewportControls;
77
77
  var Logo = function () {
78
- return (0, jsx_runtime_1.jsx)("a", { className: 'msp-logo', href: 'https://molstar.org', target: '_blank' }, void 0);
78
+ return (0, jsx_runtime_1.jsx)("a", { className: 'msp-logo', href: 'https://molstar.org', target: '_blank' });
79
79
  };
80
80
  exports.Logo = Logo;
81
- var Viewport = function () { return (0, jsx_runtime_1.jsx)(canvas_1.ViewportCanvas, { logo: exports.Logo }, void 0); };
81
+ var Viewport = function () { return (0, jsx_runtime_1.jsx)(canvas_1.ViewportCanvas, { logo: exports.Logo }); };
82
82
  exports.Viewport = Viewport;
@@ -242,9 +242,9 @@ var Representation;
242
242
  var qualityProps = (0, util_1.getQualityProps)(Object.assign({}, currentProps, props), currentData);
243
243
  Object.assign(currentProps, props, qualityProps);
244
244
  var visuals = currentProps.visuals;
245
- return mol_task_1.Task.create("Creating or updating '".concat(label, "' representation"), function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
245
+ return mol_task_1.Task.create("Creating or updating '".concat(label, "' representation"), function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
246
246
  var i, il;
247
- return (0, tslib_1.__generator)(this, function (_a) {
247
+ return tslib_1.__generator(this, function (_a) {
248
248
  switch (_a.label) {
249
249
  case 0:
250
250
  i = 0, il = reprList.length;
@@ -331,8 +331,8 @@ var Representation;
331
331
  if (props === void 0) { props = {}; }
332
332
  var qualityProps = (0, util_1.getQualityProps)(Object.assign({}, currentProps, props));
333
333
  Object.assign(currentProps, props, qualityProps);
334
- return mol_task_1.Task.create("Updating '".concat(label, "' representation"), function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
335
- return (0, tslib_1.__generator)(this, function (_a) {
334
+ return mol_task_1.Task.create("Updating '".concat(label, "' representation"), function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
335
+ return tslib_1.__generator(this, function (_a) {
336
336
  // TODO
337
337
  geometryState.add(0, renderObject.id);
338
338
  geometryState.snapshot();
@@ -31,17 +31,17 @@ var SharedParams = {
31
31
  color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen),
32
32
  arcScale: param_definition_1.ParamDefinition.Numeric(0.7, { min: 0.01, max: 1, step: 0.01 })
33
33
  };
34
- var LinesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
- var VectorsParams = (0, tslib_1.__assign)({}, LinesParams);
36
- var ArcParams = (0, tslib_1.__assign)({}, LinesParams);
37
- var SectorParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
34
+ var LinesParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
+ var VectorsParams = tslib_1.__assign({}, LinesParams);
36
+ var ArcParams = tslib_1.__assign({}, LinesParams);
37
+ var SectorParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
38
38
  var AngleVisuals = {
39
- 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
40
- 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
41
- 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
42
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
39
+ 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
40
+ 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
41
+ 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return (tslib_1.__assign(tslib_1.__assign({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
42
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
43
43
  };
44
- exports.AngleParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, VectorsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['vectors', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(AngleVisuals)) });
44
+ exports.AngleParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, VectorsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['vectors', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(AngleVisuals)) });
45
45
  //
46
46
  function getAngleState() {
47
47
  return {
@@ -16,4 +16,4 @@ exports.MeasurementRepresentationCommonTextParams = {
16
16
  textColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.black, { isEssential: true }),
17
17
  textSize: param_definition_1.ParamDefinition.Numeric(0.5, { min: 0.1, max: 10, step: 0.1 }, { isEssential: true }),
18
18
  };
19
- exports.LociLabelTextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, text_1.Text.Params), exports.MeasurementRepresentationCommonTextParams), { borderWidth: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 0.5, step: 0.01 }) });
19
+ exports.LociLabelTextParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, text_1.Text.Params), exports.MeasurementRepresentationCommonTextParams), { borderWidth: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 0.5, step: 0.01 }) });
@@ -31,22 +31,22 @@ var SharedParams = {
31
31
  color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen),
32
32
  arcScale: param_definition_1.ParamDefinition.Numeric(0.7, { min: 0.01, max: 1, step: 0.01 })
33
33
  };
34
- var LinesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
- var VectorsParams = (0, tslib_1.__assign)({}, LinesParams);
36
- var ExtendersParams = (0, tslib_1.__assign)({}, LinesParams);
37
- var ArmsParams = (0, tslib_1.__assign)({}, LinesParams);
38
- var ArcParams = (0, tslib_1.__assign)({}, LinesParams);
39
- var SectorParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
34
+ var LinesParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesSize: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.04, { min: 0.01, max: 0.2, step: 0.01 }) });
35
+ var VectorsParams = tslib_1.__assign({}, LinesParams);
36
+ var ExtendersParams = tslib_1.__assign({}, LinesParams);
37
+ var ArmsParams = tslib_1.__assign({}, LinesParams);
38
+ var ArcParams = tslib_1.__assign({}, LinesParams);
39
+ var SectorParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams), { ignoreLight: param_definition_1.ParamDefinition.Boolean(true), sectorOpacity: param_definition_1.ParamDefinition.Numeric(0.75, { min: 0, max: 1, step: 0.01 }) });
40
40
  var DihedralVisuals = {
41
- 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
42
- 'extenders': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getExtendersShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
43
- 'connector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getConnectorShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
44
- 'arms': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArmsShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
45
- 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
46
- 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
47
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
41
+ 'vectors': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getVectorsShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
42
+ 'extenders': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getExtendersShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
43
+ 'connector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getConnectorShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
44
+ 'arms': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArmsShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
45
+ 'arc': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getArcShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
46
+ 'sector': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getSectorShape, mesh_1.Mesh.Utils, { modifyProps: function (p) { return (tslib_1.__assign(tslib_1.__assign({}, p), { alpha: p.sectorOpacity })); }, modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
47
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
48
48
  };
49
- exports.DihedralParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, VectorsParams), ExtendersParams), ArmsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['extenders', 'arms', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(DihedralVisuals)) });
49
+ exports.DihedralParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, VectorsParams), ExtendersParams), ArmsParams), ArcParams), SectorParams), common_1.LociLabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['extenders', 'arms', 'sector', 'text'], param_definition_1.ParamDefinition.objectToOptions(DihedralVisuals)) });
50
50
  //
51
51
  function getDihedralState() {
52
52
  return {
@@ -25,13 +25,13 @@ var geometry_1 = require("../../../mol-math/geometry");
25
25
  var SharedParams = {
26
26
  unitLabel: param_definition_1.ParamDefinition.Text('\u212B', { isEssential: true })
27
27
  };
28
- var LineParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen, { isEssential: true }), linesSize: param_definition_1.ParamDefinition.Numeric(0.075, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0.01, max: 0.2, step: 0.01 }) });
29
- var TextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, common_1.LociLabelTextParams), SharedParams);
28
+ var LineParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, lines_1.Lines.Params), SharedParams), { lineSizeAttenuation: param_definition_1.ParamDefinition.Boolean(true), linesColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.lightgreen, { isEssential: true }), linesSize: param_definition_1.ParamDefinition.Numeric(0.075, { min: 0.01, max: 5, step: 0.01 }), dashLength: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0.01, max: 0.2, step: 0.01 }) });
29
+ var TextParams = tslib_1.__assign(tslib_1.__assign({}, common_1.LociLabelTextParams), SharedParams);
30
30
  var DistanceVisuals = {
31
- 'lines': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getLinesShape, lines_1.Lines.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
32
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
31
+ 'lines': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getLinesShape, lines_1.Lines.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerActions.Highlighting })); } }); },
32
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { markerActions: marker_action_1.MarkerAction.None })); } }); },
33
33
  };
34
- exports.DistanceParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, LineParams), TextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['lines', 'text'], param_definition_1.ParamDefinition.objectToOptions(DistanceVisuals)) });
34
+ exports.DistanceParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, LineParams), TextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['lines', 'text'], param_definition_1.ParamDefinition.objectToOptions(DistanceVisuals)) });
35
35
  //
36
36
  function getDistanceState() {
37
37
  return {
@@ -17,11 +17,11 @@ var text_builder_1 = require("../../../mol-geo/geometry/text/text-builder");
17
17
  var geometry_1 = require("../../../mol-math/geometry");
18
18
  var label_1 = require("../../../mol-theme/label");
19
19
  var common_1 = require("./common");
20
- var TextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, common_1.LociLabelTextParams), { offsetZ: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }) });
20
+ var TextParams = tslib_1.__assign(tslib_1.__assign({}, common_1.LociLabelTextParams), { offsetZ: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }) });
21
21
  var LabelVisuals = {
22
- 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return ((0, tslib_1.__assign)((0, tslib_1.__assign)({}, s), { pickable: false })); } }); },
22
+ 'text': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getTextShape, text_1.Text.Utils, { modifyState: function (s) { return (tslib_1.__assign(tslib_1.__assign({}, s), { pickable: false })); } }); },
23
23
  };
24
- exports.LabelParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, TextParams), { scaleByRadius: param_definition_1.ParamDefinition.Boolean(true), visuals: param_definition_1.ParamDefinition.MultiSelect(['text'], param_definition_1.ParamDefinition.objectToOptions(LabelVisuals)) });
24
+ exports.LabelParams = tslib_1.__assign(tslib_1.__assign({}, TextParams), { scaleByRadius: param_definition_1.ParamDefinition.Boolean(true), visuals: param_definition_1.ParamDefinition.MultiSelect(['text'], param_definition_1.ParamDefinition.objectToOptions(LabelVisuals)) });
25
25
  //
26
26
  var tmpSphere = (0, geometry_1.Sphere3D)();
27
27
  function label(info, condensed) {
@@ -27,15 +27,15 @@ var SharedParams = {
27
27
  scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }),
28
28
  radiusScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 10, step: 0.1 })
29
29
  };
30
- var AxesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
31
- var BoxParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
32
- var EllipsoidParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), SharedParams);
30
+ var AxesParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams);
31
+ var BoxParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams);
32
+ var EllipsoidParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), SharedParams);
33
33
  var OrientationVisuals = {
34
34
  'axes': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getAxesShape, mesh_1.Mesh.Utils); },
35
35
  'box': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getBoxShape, mesh_1.Mesh.Utils); },
36
36
  'ellipsoid': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getEllipsoidShape, mesh_1.Mesh.Utils); },
37
37
  };
38
- exports.OrientationParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, AxesParams), BoxParams), EllipsoidParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['box'], param_definition_1.ParamDefinition.objectToOptions(OrientationVisuals)) });
38
+ exports.OrientationParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, AxesParams), BoxParams), EllipsoidParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['box'], param_definition_1.ParamDefinition.objectToOptions(OrientationVisuals)) });
39
39
  //
40
40
  function getAxesName(locis) {
41
41
  var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
@@ -20,11 +20,11 @@ var marker_action_1 = require("../../../mol-util/marker-action");
20
20
  var plane_1 = require("../../../mol-geo/primitive/plane");
21
21
  var structure_1 = require("../../../mol-model/structure");
22
22
  var geometry_1 = require("../../../mol-math/geometry");
23
- var _PlaneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }) });
23
+ var _PlaneParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), { color: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), scaleFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 10, step: 0.1 }) });
24
24
  var PlaneVisuals = {
25
25
  'plane': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getPlaneShape, mesh_1.Mesh.Utils); },
26
26
  };
27
- exports.PlaneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, _PlaneParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['plane'], param_definition_1.ParamDefinition.objectToOptions(PlaneVisuals)) });
27
+ exports.PlaneParams = tslib_1.__assign(tslib_1.__assign({}, _PlaneParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['plane'], param_definition_1.ParamDefinition.objectToOptions(PlaneVisuals)) });
28
28
  //
29
29
  function getPlaneName(locis) {
30
30
  var label = (0, label_1.structureElementLociLabelMany)(locis, { countsOnly: true });
@@ -31,11 +31,11 @@ var CellAttachment = {
31
31
  corner: 'Corner',
32
32
  center: 'Center'
33
33
  };
34
- var CellParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { cellColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), cellScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 5, step: 0.1 }), ref: param_definition_1.ParamDefinition.Select('model', param_definition_1.ParamDefinition.objectToOptions(CellRef), { isEssential: true }), attachment: param_definition_1.ParamDefinition.Select('corner', param_definition_1.ParamDefinition.objectToOptions(CellAttachment), { isEssential: true }) });
34
+ var CellParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), { cellColor: param_definition_1.ParamDefinition.Color(names_1.ColorNames.orange), cellScale: param_definition_1.ParamDefinition.Numeric(2, { min: 0.1, max: 5, step: 0.1 }), ref: param_definition_1.ParamDefinition.Select('model', param_definition_1.ParamDefinition.objectToOptions(CellRef), { isEssential: true }), attachment: param_definition_1.ParamDefinition.Select('corner', param_definition_1.ParamDefinition.objectToOptions(CellAttachment), { isEssential: true }) });
35
35
  var UnitcellVisuals = {
36
36
  'mesh': function (ctx, getParams) { return (0, representation_1.ShapeRepresentation)(getUnitcellShape, mesh_1.Mesh.Utils); },
37
37
  };
38
- exports.UnitcellParams = (0, tslib_1.__assign)({}, CellParams);
38
+ exports.UnitcellParams = tslib_1.__assign({}, CellParams);
39
39
  function getUnitcellMesh(data, props, mesh) {
40
40
  var state = mesh_builder_1.MeshBuilder.createState(256, 128, mesh);
41
41
  var fromFractional = data.symmetry.spacegroup.cell.fromFractional;
@@ -84,9 +84,9 @@ function ShapeRepresentation(getShape, geometryUtils, builder) {
84
84
  if (props === void 0) { props = {}; }
85
85
  if (builder.modifyProps)
86
86
  props = builder.modifyProps(props);
87
- return mol_task_1.Task.create('ShapeRepresentation.create', function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
87
+ return mol_task_1.Task.create('ShapeRepresentation.create', function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
88
88
  var newProps, shape, _a, transform, values, state, instanceCount, groupCount;
89
- return (0, tslib_1.__generator)(this, function (_b) {
89
+ return tslib_1.__generator(this, function (_b) {
90
90
  switch (_b.label) {
91
91
  case 0:
92
92
  newProps = Object.assign(currentProps, props);
@@ -45,10 +45,10 @@ function ComplexRepresentation(label, ctx, getParams, visualCtor) {
45
45
  _props = param_definition_1.ParamDefinition.getDefaultValues(_params);
46
46
  }
47
47
  _props = Object.assign({}, _props, props);
48
- return mol_task_1.Task.create('Creating or updating ComplexRepresentation', function (runtime) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
48
+ return mol_task_1.Task.create('Creating or updating ComplexRepresentation', function (runtime) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
49
49
  var newVisual, promise;
50
50
  var _a;
51
- return (0, tslib_1.__generator)(this, function (_b) {
51
+ return tslib_1.__generator(this, function (_b) {
52
52
  switch (_b.label) {
53
53
  case 0:
54
54
  newVisual = false;
@@ -241,9 +241,9 @@ function ComplexVisual(builder, materialId) {
241
241
  }
242
242
  exports.ComplexVisual = ComplexVisual;
243
243
  // mesh
244
- exports.ComplexMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params_1.StructureMeshParams), params_1.StructureParams);
244
+ exports.ComplexMeshParams = tslib_1.__assign(tslib_1.__assign({}, params_1.StructureMeshParams), params_1.StructureParams);
245
245
  function ComplexMeshVisual(builder, materialId) {
246
- return ComplexVisual((0, tslib_1.__assign)((0, tslib_1.__assign)({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
246
+ return ComplexVisual(tslib_1.__assign(tslib_1.__assign({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
247
247
  builder.setUpdateState(state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure);
248
248
  if (!size_1.SizeTheme.areEqual(newTheme.size, currentTheme.size))
249
249
  state.createGeometry = true;
@@ -251,9 +251,9 @@ function ComplexMeshVisual(builder, materialId) {
251
251
  }
252
252
  exports.ComplexMeshVisual = ComplexMeshVisual;
253
253
  // cylinders
254
- exports.ComplexCylindersParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params_1.StructureCylindersParams), params_1.StructureParams);
254
+ exports.ComplexCylindersParams = tslib_1.__assign(tslib_1.__assign({}, params_1.StructureCylindersParams), params_1.StructureParams);
255
255
  function ComplexCylindersVisual(builder, materialId) {
256
- return ComplexVisual((0, tslib_1.__assign)((0, tslib_1.__assign)({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
256
+ return ComplexVisual(tslib_1.__assign(tslib_1.__assign({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
257
257
  builder.setUpdateState(state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure);
258
258
  if (!size_1.SizeTheme.areEqual(newTheme.size, currentTheme.size))
259
259
  state.updateSize = true;
@@ -261,9 +261,9 @@ function ComplexCylindersVisual(builder, materialId) {
261
261
  }
262
262
  exports.ComplexCylindersVisual = ComplexCylindersVisual;
263
263
  // lines
264
- exports.ComplexLinesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params_1.StructureLinesParams), params_1.StructureParams);
264
+ exports.ComplexLinesParams = tslib_1.__assign(tslib_1.__assign({}, params_1.StructureLinesParams), params_1.StructureParams);
265
265
  function ComplexLinesVisual(builder, materialId) {
266
- return ComplexVisual((0, tslib_1.__assign)((0, tslib_1.__assign)({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
266
+ return ComplexVisual(tslib_1.__assign(tslib_1.__assign({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
267
267
  builder.setUpdateState(state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure);
268
268
  if (!size_1.SizeTheme.areEqual(newTheme.size, currentTheme.size))
269
269
  state.updateSize = true;
@@ -271,9 +271,9 @@ function ComplexLinesVisual(builder, materialId) {
271
271
  }
272
272
  exports.ComplexLinesVisual = ComplexLinesVisual;
273
273
  // text
274
- exports.ComplexTextParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params_1.StructureTextParams), params_1.StructureParams);
274
+ exports.ComplexTextParams = tslib_1.__assign(tslib_1.__assign({}, params_1.StructureTextParams), params_1.StructureParams);
275
275
  function ComplexTextVisual(builder, materialId) {
276
- return ComplexVisual((0, tslib_1.__assign)((0, tslib_1.__assign)({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
276
+ return ComplexVisual(tslib_1.__assign(tslib_1.__assign({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
277
277
  builder.setUpdateState(state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure);
278
278
  if (!size_1.SizeTheme.areEqual(newTheme.size, currentTheme.size))
279
279
  state.updateSize = true;
@@ -303,9 +303,9 @@ function ComplexTextVisual(builder, materialId) {
303
303
  }
304
304
  exports.ComplexTextVisual = ComplexTextVisual;
305
305
  // direct-volume
306
- exports.ComplexDirectVolumeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params_1.StructureDirectVolumeParams), params_1.StructureParams);
306
+ exports.ComplexDirectVolumeParams = tslib_1.__assign(tslib_1.__assign({}, params_1.StructureDirectVolumeParams), params_1.StructureParams);
307
307
  function ComplexDirectVolumeVisual(builder, materialId) {
308
- return ComplexVisual((0, tslib_1.__assign)((0, tslib_1.__assign)({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
308
+ return ComplexVisual(tslib_1.__assign(tslib_1.__assign({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
309
309
  builder.setUpdateState(state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure);
310
310
  if (!size_1.SizeTheme.areEqual(newTheme.size, currentTheme.size))
311
311
  state.createGeometry = true;
@@ -313,9 +313,9 @@ function ComplexDirectVolumeVisual(builder, materialId) {
313
313
  }
314
314
  exports.ComplexDirectVolumeVisual = ComplexDirectVolumeVisual;
315
315
  // texture-mesh
316
- exports.ComplexTextureMeshParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, params_1.StructureTextureMeshParams), params_1.StructureParams);
316
+ exports.ComplexTextureMeshParams = tslib_1.__assign(tslib_1.__assign({}, params_1.StructureTextureMeshParams), params_1.StructureParams);
317
317
  function ComplexTextureMeshVisual(builder, materialId) {
318
- return ComplexVisual((0, tslib_1.__assign)((0, tslib_1.__assign)({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
318
+ return ComplexVisual(tslib_1.__assign(tslib_1.__assign({}, builder), { setUpdateState: function (state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure) {
319
319
  builder.setUpdateState(state, newProps, currentProps, newTheme, currentTheme, newStructure, currentStructure);
320
320
  if (!size_1.SizeTheme.areEqual(newTheme.size, currentTheme.size))
321
321
  state.createGeometry = true;
@@ -26,11 +26,11 @@ exports.StructureParams = {
26
26
  unitKinds: getUnitKindsParam(['atomic', 'spheres']),
27
27
  includeParent: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }),
28
28
  };
29
- exports.StructureMeshParams = (0, tslib_1.__assign)({}, mesh_1.Mesh.Params);
30
- exports.StructureSpheresParams = (0, tslib_1.__assign)({}, spheres_1.Spheres.Params);
31
- exports.StructureCylindersParams = (0, tslib_1.__assign)({}, cylinders_1.Cylinders.Params);
32
- exports.StructurePointsParams = (0, tslib_1.__assign)({}, points_1.Points.Params);
33
- exports.StructureLinesParams = (0, tslib_1.__assign)({}, lines_1.Lines.Params);
34
- exports.StructureTextParams = (0, tslib_1.__assign)({}, text_1.Text.Params);
35
- exports.StructureDirectVolumeParams = (0, tslib_1.__assign)({}, direct_volume_1.DirectVolume.Params);
36
- exports.StructureTextureMeshParams = (0, tslib_1.__assign)({}, texture_mesh_1.TextureMesh.Params);
29
+ exports.StructureMeshParams = tslib_1.__assign({}, mesh_1.Mesh.Params);
30
+ exports.StructureSpheresParams = tslib_1.__assign({}, spheres_1.Spheres.Params);
31
+ exports.StructureCylindersParams = tslib_1.__assign({}, cylinders_1.Cylinders.Params);
32
+ exports.StructurePointsParams = tslib_1.__assign({}, points_1.Points.Params);
33
+ exports.StructureLinesParams = tslib_1.__assign({}, lines_1.Lines.Params);
34
+ exports.StructureTextParams = tslib_1.__assign({}, text_1.Text.Params);
35
+ exports.StructureDirectVolumeParams = tslib_1.__assign({}, direct_volume_1.DirectVolume.Params);
36
+ exports.StructureTextureMeshParams = tslib_1.__assign({}, texture_mesh_1.TextureMesh.Params);
@@ -24,7 +24,7 @@ var line_1 = require("./representation/line");
24
24
  var gaussian_volume_1 = require("./representation/gaussian-volume");
25
25
  var backbone_1 = require("./representation/backbone");
26
26
  var StructureRepresentationRegistry = /** @class */ (function (_super) {
27
- (0, tslib_1.__extends)(StructureRepresentationRegistry, _super);
27
+ tslib_1.__extends(StructureRepresentationRegistry, _super);
28
28
  function StructureRepresentationRegistry() {
29
29
  var _this = _super.call(this) || this;
30
30
  (0, object_1.objectForEach)(StructureRepresentationRegistry.BuiltIn, function (p, k) {
@@ -20,7 +20,7 @@ var BackboneVisuals = {
20
20
  'polymer-backbone-sphere': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Polymer backbone sphere', ctx, getParams, polymer_backbone_sphere_1.PolymerBackboneSphereVisual); },
21
21
  'polymer-gap': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Polymer gap cylinder', ctx, getParams, polymer_gap_cylinder_1.PolymerGapVisual); },
22
22
  };
23
- exports.BackboneParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, polymer_backbone_sphere_1.PolymerBackboneSphereParams), polymer_backbone_cylinder_1.PolymerBackboneCylinderParams), polymer_gap_cylinder_1.PolymerGapParams), { sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 3, step: 0.1 }), visuals: param_definition_1.ParamDefinition.MultiSelect(['polymer-backbone-cylinder', 'polymer-backbone-sphere', 'polymer-gap'], param_definition_1.ParamDefinition.objectToOptions(BackboneVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
23
+ exports.BackboneParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, polymer_backbone_sphere_1.PolymerBackboneSphereParams), polymer_backbone_cylinder_1.PolymerBackboneCylinderParams), polymer_gap_cylinder_1.PolymerGapParams), { sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(1, { min: 0.1, max: 3, step: 0.1 }), visuals: param_definition_1.ParamDefinition.MultiSelect(['polymer-backbone-cylinder', 'polymer-backbone-sphere', 'polymer-gap'], param_definition_1.ParamDefinition.objectToOptions(BackboneVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
24
24
  function getBackboneParams(ctx, structure) {
25
25
  var params = param_definition_1.ParamDefinition.clone(exports.BackboneParams);
26
26
  var hasGaps = false;
@@ -22,7 +22,7 @@ var BallAndStickVisuals = {
22
22
  'intra-bond': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Intra-unit bond cylinder', ctx, getParams, bond_intra_unit_cylinder_1.IntraUnitBondCylinderVisual); },
23
23
  'inter-bond': function (ctx, getParams) { return (0, complex_representation_1.ComplexRepresentation)('Inter-unit bond cylinder', ctx, getParams, bond_inter_unit_cylinder_1.InterUnitBondCylinderVisual); },
24
24
  };
25
- exports.BallAndStickParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, element_sphere_1.ElementSphereParams), { traceOnly: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) }), bond_intra_unit_cylinder_1.IntraUnitBondCylinderParams), bond_inter_unit_cylinder_1.InterUnitBondCylinderParams), { includeParent: param_definition_1.ParamDefinition.Boolean(false), unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), sizeFactor: param_definition_1.ParamDefinition.Numeric(0.15, { min: 0.01, max: 10, step: 0.01 }), sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(2 / 3, { min: 0.01, max: 3, step: 0.01 }), visuals: param_definition_1.ParamDefinition.MultiSelect(['element-sphere', 'intra-bond', 'inter-bond'], param_definition_1.ParamDefinition.objectToOptions(BallAndStickVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
25
+ exports.BallAndStickParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, element_sphere_1.ElementSphereParams), { traceOnly: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) }), bond_intra_unit_cylinder_1.IntraUnitBondCylinderParams), bond_inter_unit_cylinder_1.InterUnitBondCylinderParams), { includeParent: param_definition_1.ParamDefinition.Boolean(false), unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), sizeFactor: param_definition_1.ParamDefinition.Numeric(0.15, { min: 0.01, max: 10, step: 0.01 }), sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(2 / 3, { min: 0.01, max: 3, step: 0.01 }), visuals: param_definition_1.ParamDefinition.MultiSelect(['element-sphere', 'intra-bond', 'inter-bond'], param_definition_1.ParamDefinition.objectToOptions(BallAndStickVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
26
26
  function getBallAndStickParams(ctx, structure) {
27
27
  return param_definition_1.ParamDefinition.clone(exports.BallAndStickParams);
28
28
  }
@@ -21,7 +21,7 @@ var CarbohydrateVisuals = {
21
21
  'carbohydrate-link': function (ctx, getParams) { return (0, complex_representation_1.ComplexRepresentation)('Carbohydrate link cylinder', ctx, getParams, carbohydrate_link_cylinder_1.CarbohydrateLinkVisual); },
22
22
  'carbohydrate-terminal-link': function (ctx, getParams) { return (0, complex_representation_1.ComplexRepresentation)('Carbohydrate terminal link cylinder', ctx, getParams, carbohydrate_terminal_link_cylinder_1.CarbohydrateTerminalLinkVisual); },
23
23
  };
24
- exports.CarbohydrateParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, carbohydrate_symbol_mesh_1.CarbohydrateSymbolParams), carbohydrate_link_cylinder_1.CarbohydrateLinkParams), carbohydrate_terminal_link_cylinder_1.CarbohydrateTerminalLinkParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['carbohydrate-symbol', 'carbohydrate-link', 'carbohydrate-terminal-link'], param_definition_1.ParamDefinition.objectToOptions(CarbohydrateVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
24
+ exports.CarbohydrateParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, carbohydrate_symbol_mesh_1.CarbohydrateSymbolParams), carbohydrate_link_cylinder_1.CarbohydrateLinkParams), carbohydrate_terminal_link_cylinder_1.CarbohydrateTerminalLinkParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['carbohydrate-symbol', 'carbohydrate-link', 'carbohydrate-terminal-link'], param_definition_1.ParamDefinition.objectToOptions(CarbohydrateVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
25
25
  function getCarbohydrateParams(ctx, structure) {
26
26
  return param_definition_1.ParamDefinition.clone(exports.CarbohydrateParams);
27
27
  }
@@ -27,7 +27,7 @@ var CartoonVisuals = {
27
27
  'nucleotide-ring': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Nucleotide ring mesh', ctx, getParams, nucleotide_ring_mesh_1.NucleotideRingVisual); },
28
28
  'direction-wedge': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Polymer direction wedge', ctx, getParams, polymer_direction_wedge_1.PolymerDirectionVisual); }
29
29
  };
30
- exports.CartoonParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, polymer_trace_mesh_1.PolymerTraceParams), polymer_gap_cylinder_1.PolymerGapParams), nucleotide_block_mesh_1.NucleotideBlockParams), nucleotide_ring_mesh_1.NucleotideRingParams), polymer_direction_wedge_1.PolymerDirectionParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 10, step: 0.01 }), visuals: param_definition_1.ParamDefinition.MultiSelect(['polymer-trace', 'polymer-gap', 'nucleotide-ring'], param_definition_1.ParamDefinition.objectToOptions(CartoonVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
30
+ exports.CartoonParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, polymer_trace_mesh_1.PolymerTraceParams), polymer_gap_cylinder_1.PolymerGapParams), nucleotide_block_mesh_1.NucleotideBlockParams), nucleotide_ring_mesh_1.NucleotideRingParams), polymer_direction_wedge_1.PolymerDirectionParams), { sizeFactor: param_definition_1.ParamDefinition.Numeric(0.2, { min: 0, max: 10, step: 0.01 }), visuals: param_definition_1.ParamDefinition.MultiSelect(['polymer-trace', 'polymer-gap', 'nucleotide-ring'], param_definition_1.ParamDefinition.objectToOptions(CartoonVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
31
31
  function getCartoonParams(ctx, structure) {
32
32
  var params = param_definition_1.ParamDefinition.clone(exports.CartoonParams);
33
33
  var hasNucleotides = false;
@@ -61,9 +61,9 @@ exports.CartoonRepresentationProvider = (0, representation_2.StructureRepresenta
61
61
  defaultSizeTheme: { name: 'uniform' },
62
62
  isApplicable: function (structure) { return structure.polymerResidueCount > 0; },
63
63
  ensureCustomProperties: {
64
- attach: function (ctx, structure) { return (0, tslib_1.__awaiter)(void 0, void 0, void 0, function () {
64
+ attach: function (ctx, structure) { return tslib_1.__awaiter(void 0, void 0, void 0, function () {
65
65
  var _i, _a, m;
66
- return (0, tslib_1.__generator)(this, function (_b) {
66
+ return tslib_1.__generator(this, function (_b) {
67
67
  switch (_b.label) {
68
68
  case 0: return [4 /*yield*/, secondary_structure_1.SecondaryStructureProvider.attach(ctx, structure, void 0, true)];
69
69
  case 1:
@@ -21,7 +21,7 @@ var EllipsoidVisuals = {
21
21
  'intra-bond': function (ctx, getParams) { return (0, representation_2.UnitsRepresentation)('Intra-unit bond cylinder', ctx, getParams, bond_intra_unit_cylinder_1.IntraUnitBondCylinderVisual); },
22
22
  'inter-bond': function (ctx, getParams) { return (0, representation_2.ComplexRepresentation)('Inter-unit bond cylinder', ctx, getParams, bond_inter_unit_cylinder_1.InterUnitBondCylinderVisual); },
23
23
  };
24
- exports.EllipsoidParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, ellipsoid_mesh_1.EllipsoidMeshParams), bond_intra_unit_cylinder_1.IntraUnitBondCylinderParams), bond_inter_unit_cylinder_1.InterUnitBondCylinderParams), { includeParent: param_definition_1.ParamDefinition.Boolean(false), adjustCylinderLength: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }), unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.01, max: 10, step: 0.01 }), sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(0.1, { min: 0.01, max: 3, step: 0.01 }), linkCap: param_definition_1.ParamDefinition.Boolean(true), visuals: param_definition_1.ParamDefinition.MultiSelect(['ellipsoid-mesh', 'intra-bond', 'inter-bond'], param_definition_1.ParamDefinition.objectToOptions(EllipsoidVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
24
+ exports.EllipsoidParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, ellipsoid_mesh_1.EllipsoidMeshParams), bond_intra_unit_cylinder_1.IntraUnitBondCylinderParams), bond_inter_unit_cylinder_1.InterUnitBondCylinderParams), { includeParent: param_definition_1.ParamDefinition.Boolean(false), adjustCylinderLength: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }), unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), sizeFactor: param_definition_1.ParamDefinition.Numeric(1, { min: 0.01, max: 10, step: 0.01 }), sizeAspectRatio: param_definition_1.ParamDefinition.Numeric(0.1, { min: 0.01, max: 3, step: 0.01 }), linkCap: param_definition_1.ParamDefinition.Boolean(true), visuals: param_definition_1.ParamDefinition.MultiSelect(['ellipsoid-mesh', 'intra-bond', 'inter-bond'], param_definition_1.ParamDefinition.objectToOptions(EllipsoidVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
25
25
  function getEllipsoidParams(ctx, structure) {
26
26
  return param_definition_1.ParamDefinition.clone(exports.EllipsoidParams);
27
27
  }
@@ -19,7 +19,7 @@ var GaussianSurfaceVisuals = {
19
19
  'structure-gaussian-surface-mesh': function (ctx, getParams) { return (0, representation_1.ComplexRepresentation)('Structure-Gaussian surface mesh', ctx, getParams, gaussian_surface_mesh_1.StructureGaussianSurfaceVisual); },
20
20
  'gaussian-surface-wireframe': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Gaussian surface wireframe', ctx, getParams, gaussian_surface_wireframe_1.GaussianWireframeVisual); },
21
21
  };
22
- exports.GaussianSurfaceParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, gaussian_surface_mesh_1.GaussianSurfaceMeshParams), gaussian_surface_wireframe_1.GaussianWireframeParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['gaussian-surface-mesh'], param_definition_1.ParamDefinition.objectToOptions(GaussianSurfaceVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
22
+ exports.GaussianSurfaceParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, gaussian_surface_mesh_1.GaussianSurfaceMeshParams), gaussian_surface_wireframe_1.GaussianWireframeParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['gaussian-surface-mesh'], param_definition_1.ParamDefinition.objectToOptions(GaussianSurfaceVisuals)), bumpFrequency: param_definition_1.ParamDefinition.Numeric(1, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory) });
23
23
  function getGaussianSurfaceParams(ctx, structure) {
24
24
  return param_definition_1.ParamDefinition.clone(exports.GaussianSurfaceParams);
25
25
  }
@@ -15,7 +15,7 @@ var GaussianVolumeVisuals = {
15
15
  'gaussian-volume': function (ctx, getParams) { return (0, representation_1.ComplexRepresentation)('Gaussian volume', ctx, getParams, gaussian_density_volume_1.GaussianDensityVolumeVisual); },
16
16
  'units-gaussian-volume': function (ctx, getParams) { return (0, representation_1.UnitsRepresentation)('Units-Gaussian volume', ctx, getParams, gaussian_density_volume_1.UnitsGaussianDensityVolumeVisual); }
17
17
  };
18
- exports.GaussianVolumeParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, gaussian_density_volume_1.GaussianDensityVolumeParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['gaussian-volume'], param_definition_1.ParamDefinition.objectToOptions(GaussianVolumeVisuals)) });
18
+ exports.GaussianVolumeParams = tslib_1.__assign(tslib_1.__assign({}, gaussian_density_volume_1.GaussianDensityVolumeParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['gaussian-volume'], param_definition_1.ParamDefinition.objectToOptions(GaussianVolumeVisuals)) });
19
19
  function getGaussianVolumeParams(ctx, structure) {
20
20
  var p = param_definition_1.ParamDefinition.clone(exports.GaussianVolumeParams);
21
21
  p.jumpLength = param_definition_1.ParamDefinition.Numeric(4, { min: 0, max: 20, step: 0.1 });
@@ -15,7 +15,7 @@ var marker_action_1 = require("../../../mol-util/marker-action");
15
15
  var LabelVisuals = {
16
16
  'label-text': function (ctx, getParams) { return (0, representation_1.ComplexRepresentation)('Label text', ctx, getParams, label_text_1.LabelTextVisual); },
17
17
  };
18
- exports.LabelParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, label_text_1.LabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['label-text'], param_definition_1.ParamDefinition.objectToOptions(LabelVisuals)) });
18
+ exports.LabelParams = tslib_1.__assign(tslib_1.__assign({}, label_text_1.LabelTextParams), { visuals: param_definition_1.ParamDefinition.MultiSelect(['label-text'], param_definition_1.ParamDefinition.objectToOptions(LabelVisuals)) });
19
19
  function getLabelParams(ctx, structure) {
20
20
  return param_definition_1.ParamDefinition.clone(exports.LabelParams);
21
21
  }
@@ -23,7 +23,7 @@ var LineVisuals = {
23
23
  'element-point': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Points', ctx, getParams, element_point_1.ElementPointVisual); },
24
24
  'element-cross': function (ctx, getParams) { return (0, units_representation_1.UnitsRepresentation)('Crosses', ctx, getParams, element_cross_1.ElementCrossVisual); },
25
25
  };
26
- exports.LineParams = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, bond_intra_unit_line_1.IntraUnitBondLineParams), bond_inter_unit_line_1.InterUnitBondLineParams), element_point_1.ElementPointParams), element_cross_1.ElementCrossParams), { multipleBonds: param_definition_1.ParamDefinition.Select('offset', param_definition_1.ParamDefinition.arrayToOptions(['off', 'symmetric', 'offset'])), includeParent: param_definition_1.ParamDefinition.Boolean(false), sizeFactor: param_definition_1.ParamDefinition.Numeric(2, { min: 0.01, max: 10, step: 0.01 }), unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), visuals: param_definition_1.ParamDefinition.MultiSelect(['intra-bond', 'inter-bond', 'element-point', 'element-cross'], param_definition_1.ParamDefinition.objectToOptions(LineVisuals)) });
26
+ exports.LineParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, bond_intra_unit_line_1.IntraUnitBondLineParams), bond_inter_unit_line_1.InterUnitBondLineParams), element_point_1.ElementPointParams), element_cross_1.ElementCrossParams), { multipleBonds: param_definition_1.ParamDefinition.Select('offset', param_definition_1.ParamDefinition.arrayToOptions(['off', 'symmetric', 'offset'])), includeParent: param_definition_1.ParamDefinition.Boolean(false), sizeFactor: param_definition_1.ParamDefinition.Numeric(2, { min: 0.01, max: 10, step: 0.01 }), unitKinds: (0, params_1.getUnitKindsParam)(['atomic']), visuals: param_definition_1.ParamDefinition.MultiSelect(['intra-bond', 'inter-bond', 'element-point', 'element-cross'], param_definition_1.ParamDefinition.objectToOptions(LineVisuals)) });
27
27
  function getLineParams(ctx, structure) {
28
28
  var params = param_definition_1.ParamDefinition.clone(exports.LineParams);
29
29
  params.pointStyle.defaultValue = 'circle';