molstar 3.3.0 → 3.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (905) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/docking-viewer/viewport.js +1 -1
  8. package/lib/apps/viewer/app.d.ts +7 -6
  9. package/lib/apps/viewer/app.js +2 -0
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.html +106 -106
  12. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  13. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  14. package/lib/cli/cif2bcif/converter.js +1 -1
  15. package/lib/cli/cif2bcif/index.js +4 -4
  16. package/lib/commonjs/apps/docking-viewer/index.js +12 -12
  17. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  18. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  19. package/lib/commonjs/apps/viewer/app.js +24 -22
  20. package/lib/commonjs/apps/viewer/index.js +1 -1
  21. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  22. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  23. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  24. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  25. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  26. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  27. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  28. package/lib/commonjs/cli/cifschema/index.js +27 -27
  29. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -1
  30. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  31. package/lib/commonjs/cli/state-docs/index.js +2 -2
  32. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  33. package/lib/commonjs/cli/structure-info/model.js +15 -15
  34. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  35. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  36. package/lib/commonjs/examples/alpha-orbitals/index.js +11 -11
  37. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  38. package/lib/commonjs/examples/basic-wrapper/index.js +22 -22
  39. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  40. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  41. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  42. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  43. package/lib/commonjs/examples/lighting/index.js +6 -6
  44. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  45. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  46. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -26
  47. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  48. package/lib/commonjs/examples/task.js +15 -15
  49. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  50. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  51. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  52. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  53. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  54. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  55. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  56. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  57. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  58. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  59. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  60. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  61. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  62. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  63. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  64. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  65. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  66. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  67. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  68. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  69. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  70. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  71. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  72. package/lib/commonjs/extensions/g3d/data.js +6 -6
  73. package/lib/commonjs/extensions/g3d/format.js +14 -14
  74. package/lib/commonjs/extensions/g3d/model.js +4 -4
  75. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  76. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  77. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  78. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  79. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  80. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  81. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  82. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  83. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  84. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  85. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  86. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  87. package/lib/commonjs/extensions/model-export/export.js +4 -4
  88. package/lib/commonjs/extensions/model-export/index.js +1 -1
  89. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  90. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  91. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  92. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  93. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  94. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  95. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  96. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  97. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  98. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  99. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  100. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  101. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  102. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  103. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  104. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  105. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +22 -5
  106. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  107. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  108. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  109. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  110. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  111. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  112. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  113. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  114. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  115. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  116. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  117. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  118. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  119. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  120. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  121. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  122. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  123. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  124. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  125. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  126. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  127. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  128. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  129. package/lib/commonjs/mol-data/db/column.js +2 -2
  130. package/lib/commonjs/mol-data/db/table.js +1 -1
  131. package/lib/commonjs/mol-data/db.js +1 -1
  132. package/lib/commonjs/mol-data/generic.js +3 -3
  133. package/lib/commonjs/mol-data/index.js +4 -4
  134. package/lib/commonjs/mol-data/int/interval.js +1 -1
  135. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  136. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  137. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  138. package/lib/commonjs/mol-data/util.js +7 -7
  139. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  140. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -3
  141. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  142. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  143. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  144. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  145. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  146. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  147. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  148. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -3
  149. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  150. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  151. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  152. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -3
  153. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  154. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  155. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  156. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  157. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  158. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -3
  159. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  160. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  161. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  162. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  163. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  164. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  165. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  166. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  167. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  168. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  169. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  170. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  171. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  172. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  173. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  174. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  175. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  176. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  177. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  178. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  179. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  180. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  182. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  183. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  184. package/lib/commonjs/mol-gl/webgl/buffer.js +4 -5
  185. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  186. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  187. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  188. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  189. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  190. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  191. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  192. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  193. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  194. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  195. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  196. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  197. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  198. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  199. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  200. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  201. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  202. package/lib/commonjs/mol-io/reader/cif/schema.js +2 -2
  203. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  204. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  205. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  206. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  207. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  208. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  209. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  210. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  211. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  212. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  213. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  214. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  215. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  216. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  217. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  218. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  219. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  220. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  221. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  222. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  223. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  224. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  225. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  226. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  227. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  228. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  229. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  230. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  231. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  232. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  233. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  234. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  235. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  236. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  237. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  238. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
  239. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +6 -6
  240. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
  241. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +8 -8
  242. package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +2 -2
  243. package/lib/commonjs/mol-math/geometry/gaussian-density.js +5 -5
  244. package/lib/commonjs/mol-math/geometry/molecular-surface.d.ts +2 -1
  245. package/lib/commonjs/mol-math/geometry/molecular-surface.js +10 -10
  246. package/lib/commonjs/mol-math/geometry/primitives/box3d.js +2 -1
  247. package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +13 -7
  248. package/lib/commonjs/mol-math/geometry.js +8 -8
  249. package/lib/commonjs/mol-math/graph/inter-unit-graph.js +1 -1
  250. package/lib/commonjs/mol-math/graph.js +1 -1
  251. package/lib/commonjs/mol-math/linear-algebra.js +2 -2
  252. package/lib/commonjs/mol-model/sequence/alignment/alignment.js +1 -1
  253. package/lib/commonjs/mol-model/sequence/sequence.js +2 -1
  254. package/lib/commonjs/mol-model/sequence.js +1 -1
  255. package/lib/commonjs/mol-model/shape.js +1 -1
  256. package/lib/commonjs/mol-model/structure/coordinates.js +1 -1
  257. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  258. package/lib/commonjs/mol-model/structure/model/model.js +3 -3
  259. package/lib/commonjs/mol-model/structure/model/properties/atomic.js +3 -3
  260. package/lib/commonjs/mol-model/structure/model/properties/coarse.js +2 -2
  261. package/lib/commonjs/mol-model/structure/model/types/saccharides.d.ts +8 -0
  262. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +11 -0
  263. package/lib/commonjs/mol-model/structure/model.js +3 -3
  264. package/lib/commonjs/mol-model/structure/query/queries/generators.js +2 -2
  265. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +2 -2
  266. package/lib/commonjs/mol-model/structure/query.js +6 -6
  267. package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
  268. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +1 -1
  269. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +6 -9
  270. package/lib/commonjs/mol-model/structure/structure/element/element.js +5 -5
  271. package/lib/commonjs/mol-model/structure/structure/element.js +1 -1
  272. package/lib/commonjs/mol-model/structure/structure/structure.js +9 -6
  273. package/lib/commonjs/mol-model/structure/structure/symmetry.js +10 -10
  274. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +2 -2
  275. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -0
  276. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +6 -4
  277. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  278. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +3 -3
  279. package/lib/commonjs/mol-model/structure/structure/unit.js +5 -22
  280. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +1 -1
  281. package/lib/commonjs/mol-model/structure/structure.js +2 -2
  282. package/lib/commonjs/mol-model/structure/topology.js +1 -1
  283. package/lib/commonjs/mol-model/structure.js +6 -6
  284. package/lib/commonjs/mol-model/volume.js +2 -2
  285. package/lib/commonjs/mol-model-formats/shape/ply.js +7 -7
  286. package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +1 -1
  287. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -15
  288. package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +3 -3
  289. package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
  290. package/lib/commonjs/mol-model-formats/structure/basic/parser.d.ts +1 -1
  291. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +10 -10
  292. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
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  872. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.js +10 -1
  873. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +10 -1
  874. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -1
  875. package/lib/mol-repr/structure/visual/element-point.js +22 -3
  876. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
  877. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +1 -1
  878. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +10 -10
  879. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  880. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
  881. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -4
  882. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  883. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +5 -5
  884. package/lib/mol-repr/structure/visual/util/common.d.ts +1 -3
  885. package/lib/mol-repr/structure/visual/util/common.js +1 -24
  886. package/lib/mol-repr/structure/visual/util/element.js +36 -2
  887. package/lib/mol-repr/structure/visual/util/link.d.ts +13 -3
  888. package/lib/mol-repr/structure/visual/util/link.js +55 -6
  889. package/lib/mol-script/language/builder.d.ts +1 -0
  890. package/lib/mol-script/language/parser.js +7 -4
  891. package/lib/mol-task/util/scheduler.d.ts +2 -2
  892. package/lib/mol-task/util/scheduler.js +7 -7
  893. package/lib/mol-theme/color/hydrophobicity.js +2 -2
  894. package/lib/mol-util/data-source.js +2 -1
  895. package/lib/mol-util/file-info.d.ts +1 -3
  896. package/lib/mol-util/file-info.js +2 -10
  897. package/lib/mol-util/index.d.ts +1 -0
  898. package/lib/mol-util/index.js +5 -0
  899. package/lib/mol-util/zip/deflate.js +2 -1
  900. package/lib/mol-util/zip/zip.d.ts +7 -1
  901. package/lib/mol-util/zip/zip.js +5 -1
  902. package/lib/servers/model/config.d.ts +2 -2
  903. package/package.json +160 -160
  904. package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -64
  905. package/lib/mol-plugin-state/formats/structure.js +0 -61
@@ -26,7 +26,7 @@ exports.canComputeGrid3dOnGPU = canComputeGrid3dOnGPU;
26
26
  var FrameBufferName = 'grid3d-computable';
27
27
  var Texture0Name = 'grid3d-computable-0';
28
28
  var Texture1Name = 'grid3d-computable-1';
29
- var SchemaBase = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { uDimensions: (0, schema_1.UniformSpec)('v3'), uMin: (0, schema_1.UniformSpec)('v3'), uDelta: (0, schema_1.UniformSpec)('v3'), uWidth: (0, schema_1.UniformSpec)('f'), uLittleEndian: (0, schema_1.UniformSpec)('b') });
29
+ var SchemaBase = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { uDimensions: (0, schema_1.UniformSpec)('v3'), uMin: (0, schema_1.UniformSpec)('v3'), uDelta: (0, schema_1.UniformSpec)('v3'), uWidth: (0, schema_1.UniformSpec)('f'), uLittleEndian: (0, schema_1.UniformSpec)('b') });
30
30
  var CumulativeSumSchema = {
31
31
  tCumulativeSum: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest')
32
32
  };
@@ -57,13 +57,13 @@ function createGrid3dComputeRenderable(spec) {
57
57
  .replace('{MAIN}', spec.mainCode)
58
58
  .replace('{RETURN}', spec.returnCode);
59
59
  var shader = (0, shader_code_1.ShaderCode)(id, quad_vert_1.quad_vert, code);
60
- return function (ctx, webgl, grid, params) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
60
+ return function (ctx, webgl, grid, params) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
61
61
  var schema, _i, _a, b, framebuffer, tex, _b, nx, ny, nz, uWidth, values, renderable, cells, array, gl, states, yieldPeriod, i;
62
62
  var _c;
63
- return (0, tslib_1.__generator)(this, function (_d) {
63
+ return tslib_1.__generator(this, function (_d) {
64
64
  switch (_d.label) {
65
65
  case 0:
66
- schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, SchemaBase), (spec.cumulative ? CumulativeSumSchema : {})), spec.schema);
66
+ schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, SchemaBase), (spec.cumulative ? CumulativeSumSchema : {})), spec.schema);
67
67
  if (!webgl.isWebGL2) {
68
68
  if (spec.loopBounds) {
69
69
  for (_i = 0, _a = spec.loopBounds; _i < _a.length; _i++) {
@@ -89,7 +89,7 @@ function createGrid3dComputeRenderable(spec) {
89
89
  tex = [webgl.namedTextures[Texture0Name], webgl.namedTextures[Texture1Name]];
90
90
  _b = grid.dimensions, nx = _b[0], ny = _b[1], nz = _b[2];
91
91
  uWidth = Math.ceil(Math.sqrt(nx * ny * nz));
92
- values = (0, tslib_1.__assign)({ uDimensions: grid.dimensions, uMin: grid.box.min, uDelta: (0, common_1.getRegularGrid3dDelta)(grid), uWidth: uWidth, uLittleEndian: (0, is_little_endian_1.isLittleEndian)() }, spec.values(params, grid));
92
+ values = tslib_1.__assign({ uDimensions: grid.dimensions, uMin: grid.box.min, uDelta: (0, common_1.getRegularGrid3dDelta)(grid), uWidth: uWidth, uLittleEndian: (0, is_little_endian_1.isLittleEndian)() }, spec.values(params, grid));
93
93
  if (!webgl.isWebGL2) {
94
94
  values.WEBGL1 = true;
95
95
  }
@@ -18,7 +18,7 @@ var misc_1 = require("../../../mol-math/misc");
18
18
  var quad_vert_1 = require("../../../mol-gl/shader/quad.vert");
19
19
  var reduction_frag_1 = require("../../../mol-gl/shader/histogram-pyramid/reduction.frag");
20
20
  var compat_1 = require("../../webgl/compat");
21
- var HistopyramidReductionSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tInputLevel: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tPreviousLevel: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), uSize: (0, schema_1.UniformSpec)('f'), uTexSize: (0, schema_1.UniformSpec)('f'), uFirst: (0, schema_1.UniformSpec)('b') });
21
+ var HistopyramidReductionSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tInputLevel: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tPreviousLevel: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), uSize: (0, schema_1.UniformSpec)('f'), uTexSize: (0, schema_1.UniformSpec)('f'), uFirst: (0, schema_1.UniformSpec)('b') });
22
22
  var HistogramPyramidName = 'histogram-pyramid';
23
23
  function getHistopyramidReductionRenderable(ctx, inputLevel, previousLevel) {
24
24
  if (ctx.namedComputeRenderables[HistogramPyramidName]) {
@@ -33,8 +33,8 @@ function getHistopyramidReductionRenderable(ctx, inputLevel, previousLevel) {
33
33
  return ctx.namedComputeRenderables[HistogramPyramidName];
34
34
  }
35
35
  function createHistopyramidReductionRenderable(ctx, inputLevel, previousLevel) {
36
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tInputLevel: mol_util_1.ValueCell.create(inputLevel), tPreviousLevel: mol_util_1.ValueCell.create(previousLevel), uSize: mol_util_1.ValueCell.create(0), uTexSize: mol_util_1.ValueCell.create(0), uFirst: mol_util_1.ValueCell.create(true) });
37
- var schema = (0, tslib_1.__assign)({}, HistopyramidReductionSchema);
36
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tInputLevel: mol_util_1.ValueCell.create(inputLevel), tPreviousLevel: mol_util_1.ValueCell.create(previousLevel), uSize: mol_util_1.ValueCell.create(0), uTexSize: mol_util_1.ValueCell.create(0), uFirst: mol_util_1.ValueCell.create(true) });
37
+ var schema = tslib_1.__assign({}, HistopyramidReductionSchema);
38
38
  var shaderCode = (0, shader_code_1.ShaderCode)('reduction', quad_vert_1.quad_vert, reduction_frag_1.reduction_frag, {}, { 0: 'ivec4' });
39
39
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
40
40
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -17,7 +17,7 @@ var util_1 = require("../util");
17
17
  var quad_vert_1 = require("../../../mol-gl/shader/quad.vert");
18
18
  var sum_frag_1 = require("../../../mol-gl/shader/histogram-pyramid/sum.frag");
19
19
  var compat_1 = require("../../webgl/compat");
20
- var HistopyramidSumSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tTexture: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest') });
20
+ var HistopyramidSumSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tTexture: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest') });
21
21
  var HistopyramidSumName = 'histopyramid-sum';
22
22
  function getHistopyramidSumRenderable(ctx, texture) {
23
23
  if (ctx.namedComputeRenderables[HistopyramidSumName]) {
@@ -31,8 +31,8 @@ function getHistopyramidSumRenderable(ctx, texture) {
31
31
  return ctx.namedComputeRenderables[HistopyramidSumName];
32
32
  }
33
33
  function createHistopyramidSumRenderable(ctx, texture) {
34
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tTexture: mol_util_1.ValueCell.create(texture) });
35
- var schema = (0, tslib_1.__assign)({}, HistopyramidSumSchema);
34
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tTexture: mol_util_1.ValueCell.create(texture) });
35
+ var schema = tslib_1.__assign({}, HistopyramidSumSchema);
36
36
  var shaderCode = (0, shader_code_1.ShaderCode)('sum', quad_vert_1.quad_vert, sum_frag_1.sum_frag, {}, { 0: 'ivec4' });
37
37
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
38
38
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -16,7 +16,7 @@ var util_1 = require("../util");
16
16
  var tables_1 = require("./tables");
17
17
  var quad_vert_1 = require("../../../mol-gl/shader/quad.vert");
18
18
  var active_voxels_frag_1 = require("../../../mol-gl/shader/marching-cubes/active-voxels.frag");
19
- var ActiveVoxelsSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tTriCount: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'nearest'), tVolumeData: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uIsoValue: (0, schema_1.UniformSpec)('f'), uGridDim: (0, schema_1.UniformSpec)('v3'), uGridTexDim: (0, schema_1.UniformSpec)('v3'), uScale: (0, schema_1.UniformSpec)('v2') });
19
+ var ActiveVoxelsSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tTriCount: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'nearest'), tVolumeData: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uIsoValue: (0, schema_1.UniformSpec)('f'), uGridDim: (0, schema_1.UniformSpec)('v3'), uGridTexDim: (0, schema_1.UniformSpec)('v3'), uScale: (0, schema_1.UniformSpec)('v2') });
20
20
  var ActiveVoxelsName = 'active-voxels';
21
21
  function getActiveVoxelsRenderable(ctx, volumeData, gridDim, gridTexDim, isoValue, scale) {
22
22
  if (ctx.namedComputeRenderables[ActiveVoxelsName]) {
@@ -35,8 +35,8 @@ function getActiveVoxelsRenderable(ctx, volumeData, gridDim, gridTexDim, isoValu
35
35
  return ctx.namedComputeRenderables[ActiveVoxelsName];
36
36
  }
37
37
  function createActiveVoxelsRenderable(ctx, volumeData, gridDim, gridTexDim, isoValue, scale) {
38
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tTriCount: mol_util_1.ValueCell.create((0, tables_1.getTriCount)()), uQuadScale: mol_util_1.ValueCell.create(scale), tVolumeData: mol_util_1.ValueCell.create(volumeData), uIsoValue: mol_util_1.ValueCell.create(isoValue), uGridDim: mol_util_1.ValueCell.create(gridDim), uGridTexDim: mol_util_1.ValueCell.create(gridTexDim), uScale: mol_util_1.ValueCell.create(scale) });
39
- var schema = (0, tslib_1.__assign)({}, ActiveVoxelsSchema);
38
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tTriCount: mol_util_1.ValueCell.create((0, tables_1.getTriCount)()), uQuadScale: mol_util_1.ValueCell.create(scale), tVolumeData: mol_util_1.ValueCell.create(volumeData), uIsoValue: mol_util_1.ValueCell.create(isoValue), uGridDim: mol_util_1.ValueCell.create(gridDim), uGridTexDim: mol_util_1.ValueCell.create(gridTexDim), uScale: mol_util_1.ValueCell.create(scale) });
39
+ var schema = tslib_1.__assign({}, ActiveVoxelsSchema);
40
40
  var shaderCode = (0, shader_code_1.ShaderCode)('active-voxels', quad_vert_1.quad_vert, active_voxels_frag_1.activeVoxels_frag);
41
41
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
42
42
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -19,7 +19,7 @@ var quad_vert_1 = require("../../../mol-gl/shader/quad.vert");
19
19
  var isosurface_frag_1 = require("../../../mol-gl/shader/marching-cubes/isosurface.frag");
20
20
  var active_voxels_1 = require("./active-voxels");
21
21
  var compat_1 = require("../../webgl/compat");
22
- var IsosurfaceSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tTriIndices: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'nearest'), tActiveVoxelsPyramid: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tActiveVoxelsBase: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tVolumeData: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uIsoValue: (0, schema_1.UniformSpec)('f'), uSize: (0, schema_1.UniformSpec)('f'), uLevels: (0, schema_1.UniformSpec)('f'), uCount: (0, schema_1.UniformSpec)('f'), uInvert: (0, schema_1.UniformSpec)('b'), uGridDim: (0, schema_1.UniformSpec)('v3'), uGridTexDim: (0, schema_1.UniformSpec)('v3'), uGridTransform: (0, schema_1.UniformSpec)('m4'), uScale: (0, schema_1.UniformSpec)('v2'), dPackedGroup: (0, schema_1.DefineSpec)('boolean'), dAxisOrder: (0, schema_1.DefineSpec)('string', ['012', '021', '102', '120', '201', '210']) });
22
+ var IsosurfaceSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tTriIndices: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'nearest'), tActiveVoxelsPyramid: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tActiveVoxelsBase: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tVolumeData: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uIsoValue: (0, schema_1.UniformSpec)('f'), uSize: (0, schema_1.UniformSpec)('f'), uLevels: (0, schema_1.UniformSpec)('f'), uCount: (0, schema_1.UniformSpec)('f'), uInvert: (0, schema_1.UniformSpec)('b'), uGridDim: (0, schema_1.UniformSpec)('v3'), uGridTexDim: (0, schema_1.UniformSpec)('v3'), uGridTransform: (0, schema_1.UniformSpec)('m4'), uScale: (0, schema_1.UniformSpec)('v2'), dPackedGroup: (0, schema_1.DefineSpec)('boolean'), dAxisOrder: (0, schema_1.DefineSpec)('string', ['012', '021', '102', '120', '201', '210']) });
23
23
  var IsosurfaceName = 'isosurface';
24
24
  function getIsosurfaceRenderable(ctx, activeVoxelsPyramid, activeVoxelsBase, volumeData, gridDim, gridTexDim, transform, isoValue, levels, scale, count, invert, packedGroup, axisOrder) {
25
25
  if (ctx.namedComputeRenderables[IsosurfaceName]) {
@@ -47,8 +47,8 @@ function getIsosurfaceRenderable(ctx, activeVoxelsPyramid, activeVoxelsBase, vol
47
47
  }
48
48
  function createIsosurfaceRenderable(ctx, activeVoxelsPyramid, activeVoxelsBase, volumeData, gridDim, gridTexDim, transform, isoValue, levels, scale, count, invert, packedGroup, axisOrder) {
49
49
  // console.log('uSize', Math.pow(2, levels))
50
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tTriIndices: mol_util_1.ValueCell.create((0, tables_1.getTriIndices)()), tActiveVoxelsPyramid: mol_util_1.ValueCell.create(activeVoxelsPyramid), tActiveVoxelsBase: mol_util_1.ValueCell.create(activeVoxelsBase), tVolumeData: mol_util_1.ValueCell.create(volumeData), uIsoValue: mol_util_1.ValueCell.create(isoValue), uSize: mol_util_1.ValueCell.create(Math.pow(2, levels)), uLevels: mol_util_1.ValueCell.create(levels), uCount: mol_util_1.ValueCell.create(count), uInvert: mol_util_1.ValueCell.create(invert), uGridDim: mol_util_1.ValueCell.create(gridDim), uGridTexDim: mol_util_1.ValueCell.create(gridTexDim), uGridTransform: mol_util_1.ValueCell.create(transform), uScale: mol_util_1.ValueCell.create(scale), dPackedGroup: mol_util_1.ValueCell.create(packedGroup), dAxisOrder: mol_util_1.ValueCell.create(axisOrder.join('')) });
51
- var schema = (0, tslib_1.__assign)({}, IsosurfaceSchema);
50
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tTriIndices: mol_util_1.ValueCell.create((0, tables_1.getTriIndices)()), tActiveVoxelsPyramid: mol_util_1.ValueCell.create(activeVoxelsPyramid), tActiveVoxelsBase: mol_util_1.ValueCell.create(activeVoxelsBase), tVolumeData: mol_util_1.ValueCell.create(volumeData), uIsoValue: mol_util_1.ValueCell.create(isoValue), uSize: mol_util_1.ValueCell.create(Math.pow(2, levels)), uLevels: mol_util_1.ValueCell.create(levels), uCount: mol_util_1.ValueCell.create(count), uInvert: mol_util_1.ValueCell.create(invert), uGridDim: mol_util_1.ValueCell.create(gridDim), uGridTexDim: mol_util_1.ValueCell.create(gridTexDim), uGridTransform: mol_util_1.ValueCell.create(transform), uScale: mol_util_1.ValueCell.create(scale), dPackedGroup: mol_util_1.ValueCell.create(packedGroup), dAxisOrder: mol_util_1.ValueCell.create(axisOrder.join('')) });
51
+ var schema = tslib_1.__assign({}, IsosurfaceSchema);
52
52
  var shaderCode = (0, shader_code_1.ShaderCode)('isosurface', quad_vert_1.quad_vert, isosurface_frag_1.isosurface_frag, { drawBuffers: 'required' });
53
53
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
54
54
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -33,11 +33,11 @@ exports.QuadValues = {
33
33
  uQuadScale: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1, 1)),
34
34
  };
35
35
  //
36
- var CopySchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2') });
36
+ var CopySchema = tslib_1.__assign(tslib_1.__assign({}, exports.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2') });
37
37
  var CopyShaderCode = (0, shader_code_1.ShaderCode)('copy', quad_vert_1.quad_vert, copy_frag_1.copy_frag);
38
38
  function createCopyRenderable(ctx, texture) {
39
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.QuadValues), { tColor: mol_util_1.ValueCell.create(texture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(texture.getWidth(), texture.getHeight())) });
40
- var schema = (0, tslib_1.__assign)({}, CopySchema);
39
+ var values = tslib_1.__assign(tslib_1.__assign({}, exports.QuadValues), { tColor: mol_util_1.ValueCell.create(texture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(texture.getWidth(), texture.getHeight())) });
40
+ var schema = tslib_1.__assign({}, CopySchema);
41
41
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', CopyShaderCode, schema, values);
42
42
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
43
43
  }
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.CylindersSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aStart: (0, schema_1.AttributeSpec)('float32', 3, 0), aEnd: (0, schema_1.AttributeSpec)('float32', 3, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 3, 0), aScale: (0, schema_1.AttributeSpec)('float32', 1, 0), aCap: (0, schema_1.AttributeSpec)('float32', 1, 0), elements: (0, schema_1.ElementsSpec)('uint32'), padding: (0, schema_1.ValueSpec)('number'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f') });
15
+ exports.CylindersSchema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aStart: (0, schema_1.AttributeSpec)('float32', 3, 0), aEnd: (0, schema_1.AttributeSpec)('float32', 3, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 3, 0), aScale: (0, schema_1.AttributeSpec)('float32', 1, 0), aCap: (0, schema_1.AttributeSpec)('float32', 1, 0), elements: (0, schema_1.ElementsSpec)('uint32'), padding: (0, schema_1.ValueSpec)('number'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f') });
16
16
  function CylindersRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.CylindersSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.CylindersSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.CylindersShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.CylindersRenderable = CylindersRenderable;
@@ -12,9 +12,9 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.DirectVolumeSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), { aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), elements: (0, schema_1.ElementsSpec)('uint32'), uBboxMin: (0, schema_1.UniformSpec)('v3'), uBboxMax: (0, schema_1.UniformSpec)('v3'), uBboxSize: (0, schema_1.UniformSpec)('v3'), uMaxSteps: (0, schema_1.UniformSpec)('i'), uStepScale: (0, schema_1.UniformSpec)('f'), uJumpLength: (0, schema_1.UniformSpec)('f'), uTransform: (0, schema_1.UniformSpec)('m4'), uGridDim: (0, schema_1.UniformSpec)('v3'), tTransferTex: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'linear'), uTransferScale: (0, schema_1.UniformSpec)('f'), dGridTexType: (0, schema_1.DefineSpec)('string', ['2d', '3d']), uGridTexDim: (0, schema_1.UniformSpec)('v3'), tGridTex: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uGridStats: (0, schema_1.UniformSpec)('v4'), uCellDim: (0, schema_1.UniformSpec)('v3'), uCartnToUnit: (0, schema_1.UniformSpec)('m4'), uUnitToCartn: (0, schema_1.UniformSpec)('m4'), dPackedGroup: (0, schema_1.DefineSpec)('boolean'), dAxisOrder: (0, schema_1.DefineSpec)('string', ['012', '021', '102', '120', '201', '210']), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean') });
15
+ exports.DirectVolumeSchema = tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), { aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), elements: (0, schema_1.ElementsSpec)('uint32'), uBboxMin: (0, schema_1.UniformSpec)('v3'), uBboxMax: (0, schema_1.UniformSpec)('v3'), uBboxSize: (0, schema_1.UniformSpec)('v3'), uMaxSteps: (0, schema_1.UniformSpec)('i'), uStepScale: (0, schema_1.UniformSpec)('f'), uJumpLength: (0, schema_1.UniformSpec)('f'), uTransform: (0, schema_1.UniformSpec)('m4'), uGridDim: (0, schema_1.UniformSpec)('v3'), tTransferTex: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'linear'), uTransferScale: (0, schema_1.UniformSpec)('f'), dGridTexType: (0, schema_1.DefineSpec)('string', ['2d', '3d']), uGridTexDim: (0, schema_1.UniformSpec)('v3'), tGridTex: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uGridStats: (0, schema_1.UniformSpec)('v4'), uCellDim: (0, schema_1.UniformSpec)('v3'), uCartnToUnit: (0, schema_1.UniformSpec)('m4'), uUnitToCartn: (0, schema_1.UniformSpec)('m4'), dPackedGroup: (0, schema_1.DefineSpec)('boolean'), dAxisOrder: (0, schema_1.DefineSpec)('string', ['012', '021', '102', '120', '201', '210']), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean') });
16
16
  function DirectVolumeRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.DirectVolumeSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.DirectVolumeSchema);
18
18
  if (!ctx.isWebGL2) {
19
19
  // workaround for webgl1 limitation that loop counters need to be `const`
20
20
  schema.uMaxSteps = (0, schema_1.DefineSpec)('number');
@@ -23,7 +23,7 @@ function DirectVolumeRenderable(ctx, id, values, state, materialId, variants) {
23
23
  uObjectId: mol_util_1.ValueCell.create(id),
24
24
  };
25
25
  var shaderCode = shader_code_1.DirectVolumeShaderCode;
26
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
26
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
27
27
  return (0, renderable_1.createRenderable)(renderItem, values, state);
28
28
  }
29
29
  exports.DirectVolumeRenderable = DirectVolumeRenderable;
@@ -13,14 +13,14 @@ var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
15
  var image_1 = require("../../mol-geo/geometry/image/image");
16
- exports.ImageSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aUv: (0, schema_1.AttributeSpec)('float32', 2, 0), elements: (0, schema_1.ElementsSpec)('uint32'), uImageTexDim: (0, schema_1.UniformSpec)('v2'), tImageTex: (0, schema_1.TextureSpec)('image-uint8', 'rgba', 'ubyte', 'nearest'), tGroupTex: (0, schema_1.TextureSpec)('image-uint8', 'rgba', 'ubyte', 'nearest'), dInterpolation: (0, schema_1.DefineSpec)('string', image_1.InterpolationTypeNames) });
16
+ exports.ImageSchema = tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aUv: (0, schema_1.AttributeSpec)('float32', 2, 0), elements: (0, schema_1.ElementsSpec)('uint32'), uImageTexDim: (0, schema_1.UniformSpec)('v2'), tImageTex: (0, schema_1.TextureSpec)('image-uint8', 'rgba', 'ubyte', 'nearest'), tGroupTex: (0, schema_1.TextureSpec)('image-uint8', 'rgba', 'ubyte', 'nearest'), dInterpolation: (0, schema_1.DefineSpec)('string', image_1.InterpolationTypeNames) });
17
17
  function ImageRenderable(ctx, id, values, state, materialId, variants) {
18
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.ImageSchema);
18
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.ImageSchema);
19
19
  var internalValues = {
20
20
  uObjectId: mol_util_1.ValueCell.create(id),
21
21
  };
22
22
  var shaderCode = shader_code_1.ImageShaderCode;
23
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
23
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
24
24
  return (0, renderable_1.createRenderable)(renderItem, values, state);
25
25
  }
26
26
  exports.ImageRenderable = ImageRenderable;
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var mol_util_1 = require("../../mol-util");
14
14
  var shader_code_1 = require("../shader-code");
15
- exports.LinesSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 2, 0), aStart: (0, schema_1.AttributeSpec)('float32', 3, 0), aEnd: (0, schema_1.AttributeSpec)('float32', 3, 0), elements: (0, schema_1.ElementsSpec)('uint32'), dLineSizeAttenuation: (0, schema_1.DefineSpec)('boolean'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dFlipSided: (0, schema_1.DefineSpec)('boolean') });
15
+ exports.LinesSchema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 2, 0), aStart: (0, schema_1.AttributeSpec)('float32', 3, 0), aEnd: (0, schema_1.AttributeSpec)('float32', 3, 0), elements: (0, schema_1.ElementsSpec)('uint32'), dLineSizeAttenuation: (0, schema_1.DefineSpec)('boolean'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dFlipSided: (0, schema_1.DefineSpec)('boolean') });
16
16
  function LinesRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.LinesSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.LinesSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.LinesShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.LinesRenderable = LinesRenderable;
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.MeshSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aNormal: (0, schema_1.AttributeSpec)('float32', 3, 0), elements: (0, schema_1.ElementsSpec)('uint32'), dFlatShaded: (0, schema_1.DefineSpec)('boolean'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dFlipSided: (0, schema_1.DefineSpec)('boolean'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f'), meta: (0, schema_1.ValueSpec)('unknown') });
15
+ exports.MeshSchema = tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aNormal: (0, schema_1.AttributeSpec)('float32', 3, 0), elements: (0, schema_1.ElementsSpec)('uint32'), dFlatShaded: (0, schema_1.DefineSpec)('boolean'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dFlipSided: (0, schema_1.DefineSpec)('boolean'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f'), meta: (0, schema_1.ValueSpec)('unknown') });
16
16
  function MeshRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.MeshSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.MeshSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.MeshShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.MeshRenderable = MeshRenderable;
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.PointsSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), dPointSizeAttenuation: (0, schema_1.DefineSpec)('boolean'), dPointStyle: (0, schema_1.DefineSpec)('string', ['square', 'circle', 'fuzzy']) });
15
+ exports.PointsSchema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), dPointSizeAttenuation: (0, schema_1.DefineSpec)('boolean'), dPointStyle: (0, schema_1.DefineSpec)('string', ['square', 'circle', 'fuzzy']) });
16
16
  function PointsRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.PointsSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.PointsSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.PointsShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'points', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'points', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.PointsRenderable = PointsRenderable;
@@ -176,7 +176,7 @@ exports.ClippingSchema = {
176
176
  tClipping: TextureSpec('image-uint8', 'alpha', 'ubyte', 'nearest'),
177
177
  dClipping: DefineSpec('boolean'),
178
178
  };
179
- exports.BaseSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ dGeometryType: DefineSpec('string', ['cylinders', 'directVolume', 'image', 'lines', 'mesh', 'points', 'spheres', 'text', 'textureMesh']) }, exports.ColorSchema), exports.MarkerSchema), exports.OverpaintSchema), exports.TransparencySchema), exports.SubstanceSchema), exports.ClippingSchema), { dLightCount: DefineSpec('number'), dClipObjectCount: DefineSpec('number'), dClipVariant: DefineSpec('string', ['instance', 'pixel']), uClipObjectType: UniformSpec('i[]'), uClipObjectInvert: UniformSpec('b[]'), uClipObjectPosition: UniformSpec('v3[]'), uClipObjectRotation: UniformSpec('v4[]'), uClipObjectScale: UniformSpec('v3[]'), aInstance: AttributeSpec('float32', 1, 1),
179
+ exports.BaseSchema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({ dGeometryType: DefineSpec('string', ['cylinders', 'directVolume', 'image', 'lines', 'mesh', 'points', 'spheres', 'text', 'textureMesh']) }, exports.ColorSchema), exports.MarkerSchema), exports.OverpaintSchema), exports.TransparencySchema), exports.SubstanceSchema), exports.ClippingSchema), { dLightCount: DefineSpec('number'), dClipObjectCount: DefineSpec('number'), dClipVariant: DefineSpec('string', ['instance', 'pixel']), uClipObjectType: UniformSpec('i[]'), uClipObjectInvert: UniformSpec('b[]'), uClipObjectPosition: UniformSpec('v3[]'), uClipObjectRotation: UniformSpec('v4[]'), uClipObjectScale: UniformSpec('v3[]'), aInstance: AttributeSpec('float32', 1, 1),
180
180
  /**
181
181
  * final per-instance transform calculated for instance `i` as
182
182
  * `aTransform[i] = matrix * transform[i] * extraTransform[i]`
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.SpheresSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 2, 0), elements: (0, schema_1.ElementsSpec)('uint32'), padding: (0, schema_1.ValueSpec)('number'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f') });
15
+ exports.SpheresSchema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 2, 0), elements: (0, schema_1.ElementsSpec)('uint32'), padding: (0, schema_1.ValueSpec)('number'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f') });
16
16
  function SpheresRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.SpheresSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.SpheresSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.SpheresShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.SpheresRenderable = SpheresRenderable;
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.TextSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 2, 0), aDepth: (0, schema_1.AttributeSpec)('float32', 1, 0), elements: (0, schema_1.ElementsSpec)('uint32'), aTexCoord: (0, schema_1.AttributeSpec)('float32', 2, 0), tFont: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'linear'), padding: (0, schema_1.ValueSpec)('number'), uBorderWidth: (0, schema_1.UniformSpec)('f'), uBorderColor: (0, schema_1.UniformSpec)('v3'), uOffsetX: (0, schema_1.UniformSpec)('f'), uOffsetY: (0, schema_1.UniformSpec)('f'), uOffsetZ: (0, schema_1.UniformSpec)('f'), uBackgroundColor: (0, schema_1.UniformSpec)('v3'), uBackgroundOpacity: (0, schema_1.UniformSpec)('f') });
15
+ exports.TextSchema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), schema_1.SizeSchema), { aGroup: (0, schema_1.AttributeSpec)('float32', 1, 0), aPosition: (0, schema_1.AttributeSpec)('float32', 3, 0), aMapping: (0, schema_1.AttributeSpec)('float32', 2, 0), aDepth: (0, schema_1.AttributeSpec)('float32', 1, 0), elements: (0, schema_1.ElementsSpec)('uint32'), aTexCoord: (0, schema_1.AttributeSpec)('float32', 2, 0), tFont: (0, schema_1.TextureSpec)('image-uint8', 'alpha', 'ubyte', 'linear'), padding: (0, schema_1.ValueSpec)('number'), uBorderWidth: (0, schema_1.UniformSpec)('f'), uBorderColor: (0, schema_1.UniformSpec)('v3'), uOffsetX: (0, schema_1.UniformSpec)('f'), uOffsetY: (0, schema_1.UniformSpec)('f'), uOffsetZ: (0, schema_1.UniformSpec)('f'), uBackgroundColor: (0, schema_1.UniformSpec)('v3'), uBackgroundOpacity: (0, schema_1.UniformSpec)('f') });
16
16
  function TextRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.TextSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.TextSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.TextShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.TextRenderable = TextRenderable;
@@ -12,14 +12,14 @@ var render_item_1 = require("../webgl/render-item");
12
12
  var schema_1 = require("./schema");
13
13
  var shader_code_1 = require("../shader-code");
14
14
  var mol_util_1 = require("../../mol-util");
15
- exports.TextureMeshSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.BaseSchema), { uGeoTexDim: (0, schema_1.UniformSpec)('v2', 'buffered'), tPosition: (0, schema_1.TextureSpec)('texture', 'rgb', 'float', 'nearest'), tGroup: (0, schema_1.TextureSpec)('texture', 'alpha', 'float', 'nearest'), tNormal: (0, schema_1.TextureSpec)('texture', 'rgb', 'float', 'nearest'), dFlatShaded: (0, schema_1.DefineSpec)('boolean'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dFlipSided: (0, schema_1.DefineSpec)('boolean'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f'), meta: (0, schema_1.ValueSpec)('unknown') });
15
+ exports.TextureMeshSchema = tslib_1.__assign(tslib_1.__assign({}, schema_1.BaseSchema), { uGeoTexDim: (0, schema_1.UniformSpec)('v2', 'buffered'), tPosition: (0, schema_1.TextureSpec)('texture', 'rgb', 'float', 'nearest'), tGroup: (0, schema_1.TextureSpec)('texture', 'alpha', 'float', 'nearest'), tNormal: (0, schema_1.TextureSpec)('texture', 'rgb', 'float', 'nearest'), dFlatShaded: (0, schema_1.DefineSpec)('boolean'), uDoubleSided: (0, schema_1.UniformSpec)('b'), dFlipSided: (0, schema_1.DefineSpec)('boolean'), dIgnoreLight: (0, schema_1.DefineSpec)('boolean'), dXrayShaded: (0, schema_1.DefineSpec)('boolean'), uBumpFrequency: (0, schema_1.UniformSpec)('f'), uBumpAmplitude: (0, schema_1.UniformSpec)('f'), meta: (0, schema_1.ValueSpec)('unknown') });
16
16
  function TextureMeshRenderable(ctx, id, values, state, materialId, variants) {
17
- var schema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.TextureMeshSchema);
17
+ var schema = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, schema_1.GlobalUniformSchema), schema_1.GlobalTextureSchema), schema_1.InternalSchema), exports.TextureMeshSchema);
18
18
  var internalValues = {
19
19
  uObjectId: mol_util_1.ValueCell.create(id),
20
20
  };
21
21
  var shaderCode = shader_code_1.MeshShaderCode;
22
- var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, (0, tslib_1.__assign)((0, tslib_1.__assign)({}, values), internalValues), materialId, variants);
22
+ var renderItem = (0, render_item_1.createGraphicsRenderItem)(ctx, 'triangles', shaderCode, schema, tslib_1.__assign(tslib_1.__assign({}, values), internalValues), materialId, variants);
23
23
  return (0, renderable_1.createRenderable)(renderItem, values, state);
24
24
  }
25
25
  exports.TextureMeshRenderable = TextureMeshRenderable;
@@ -56,7 +56,7 @@ var tmpCanvasCtx;
56
56
  var tmpContainer;
57
57
  function printImageData(imageData, options) {
58
58
  if (options === void 0) { options = {}; }
59
- var o = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, DefaultPrintImageOptions), options);
59
+ var o = tslib_1.__assign(tslib_1.__assign({}, DefaultPrintImageOptions), options);
60
60
  var canvas = tmpCanvas || document.createElement('canvas');
61
61
  tmpCanvas = canvas;
62
62
  canvas.width = imageData.width;
@@ -167,6 +167,7 @@ var direct_volume_frag_1 = require("./shader/direct-volume.frag");
167
167
  exports.DirectVolumeShaderCode = ShaderCode('direct-volume', direct_volume_vert_1.directVolume_vert, direct_volume_frag_1.directVolume_frag, { fragDepth: 'optional', drawBuffers: 'optional' }, {}, ignoreDefine);
168
168
  var image_vert_1 = require("./shader/image.vert");
169
169
  var image_frag_1 = require("./shader/image.frag");
170
+ var type_helpers_1 = require("../mol-util/type-helpers");
170
171
  exports.ImageShaderCode = ShaderCode('image', image_vert_1.image_vert, image_frag_1.image_frag, { drawBuffers: 'optional' }, {}, ignoreDefineUnlit);
171
172
  function getDefinesCode(defines, ignore) {
172
173
  var _a;
@@ -191,7 +192,7 @@ function getDefinesCode(defines, ignore) {
191
192
  lines.push("#define ".concat(name_1));
192
193
  }
193
194
  else {
194
- throw new Error('unknown define type');
195
+ (0, type_helpers_1.assertUnreachable)(v);
195
196
  }
196
197
  }
197
198
  }
@@ -8,6 +8,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.createElementsBuffer = exports.createAttributeBuffers = exports.createAttributeBuffer = exports.getAttribType = exports.getBufferType = exports.getDataType = exports.getUsageHint = void 0;
9
9
  var tslib_1 = require("tslib");
10
10
  var id_factory_1 = require("../../mol-util/id-factory");
11
+ var type_helpers_1 = require("../../mol-util/type-helpers");
11
12
  var getNextBufferId = (0, id_factory_1.idFactory)();
12
13
  function getUsageHint(gl, usageHint) {
13
14
  switch (usageHint) {
@@ -51,9 +52,7 @@ function dataTypeFromArray(gl, array) {
51
52
  else if (array instanceof Float32Array) {
52
53
  return gl.FLOAT;
53
54
  }
54
- else {
55
- throw new Error('Should nevver happen');
56
- }
55
+ (0, type_helpers_1.assertUnreachable)(array);
57
56
  }
58
57
  function getBufferType(gl, bufferType) {
59
58
  switch (bufferType) {
@@ -141,7 +140,7 @@ function createAttributeBuffer(gl, state, extensions, array, itemSize, divisor,
141
140
  var instancedArrays = extensions.instancedArrays;
142
141
  var buffer = createBuffer(gl, array, usageHint, 'attribute');
143
142
  var _bufferType = buffer._bufferType, _dataType = buffer._dataType, _bpe = buffer._bpe;
144
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, buffer), { bind: function (location) {
143
+ return tslib_1.__assign(tslib_1.__assign({}, buffer), { bind: function (location) {
145
144
  gl.bindBuffer(_bufferType, buffer.getBuffer());
146
145
  if (itemSize === 16) {
147
146
  for (var i = 0; i < 4; ++i) {
@@ -172,7 +171,7 @@ exports.createAttributeBuffers = createAttributeBuffers;
172
171
  function createElementsBuffer(gl, array, usageHint) {
173
172
  if (usageHint === void 0) { usageHint = 'static'; }
174
173
  var buffer = createBuffer(gl, array, usageHint, 'elements');
175
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, buffer), { bind: function () {
174
+ return tslib_1.__assign(tslib_1.__assign({}, buffer), { bind: function () {
176
175
  gl.bindBuffer(gl.ELEMENT_ARRAY_BUFFER, buffer.getBuffer());
177
176
  } });
178
177
  }
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
5
5
  */
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
@@ -221,8 +221,8 @@ function createContext(gl, props) {
221
221
  }); };
222
222
  }
223
223
  else {
224
- readPixelsAsync = function (x, y, width, height, buffer) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () {
225
- return (0, tslib_1.__generator)(this, function (_a) {
224
+ readPixelsAsync = function (x, y, width, height, buffer) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
225
+ return tslib_1.__generator(this, function (_a) {
226
226
  readPixels(gl, x, y, width, height, buffer);
227
227
  return [2 /*return*/];
228
228
  });
@@ -233,7 +233,7 @@ function createContext(gl, props) {
233
233
  gl: gl,
234
234
  isWebGL2: (0, compat_1.isWebGL2)(gl),
235
235
  get pixelRatio() {
236
- var dpr = (typeof window !== 'undefined') ? window.devicePixelRatio : 1;
236
+ var dpr = (typeof window !== 'undefined') ? (window.devicePixelRatio || 1) : 1;
237
237
  return dpr * (props.pixelScale || 1);
238
238
  },
239
239
  extensions: extensions,
@@ -270,7 +270,7 @@ function createContext(gl, props) {
270
270
  createRenderTarget: function (width, height, depth, type, filter) {
271
271
  var renderTarget = (0, render_target_1.createRenderTarget)(gl, resources, width, height, depth, type, filter);
272
272
  renderTargets.add(renderTarget);
273
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, renderTarget), { destroy: function () {
273
+ return tslib_1.__assign(tslib_1.__assign({}, renderTarget), { destroy: function () {
274
274
  renderTarget.destroy();
275
275
  renderTargets.delete(renderTarget);
276
276
  } });
@@ -40,7 +40,7 @@ exports.GraphicsRenderVariantsWboit = exports.GraphicsRenderVariants.filter(func
40
40
  var ComputeRenderVariant = { compute: '' };
41
41
  exports.ComputeRenderVariants = Object.keys(ComputeRenderVariant);
42
42
  function createProgramVariant(ctx, variant, defineValues, shaderCode, schema) {
43
- defineValues = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, defineValues), { dRenderVariant: mol_util_1.ValueCell.create(variant) });
43
+ defineValues = tslib_1.__assign(tslib_1.__assign({}, defineValues), { dRenderVariant: mol_util_1.ValueCell.create(variant) });
44
44
  if (schema.dRenderVariant === undefined) {
45
45
  Object.defineProperty(schema, 'dRenderVariant', { value: (0, schema_1.DefineSpec)('string') });
46
46
  }
@@ -21,7 +21,7 @@ function defineValueHash(v) {
21
21
  typeof v === 'number' ? (v * 10000) : (0, util_1.hashString)(v);
22
22
  }
23
23
  function wrapCached(resourceItem) {
24
- var wrapped = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, resourceItem.value), { destroy: function () {
24
+ var wrapped = tslib_1.__assign(tslib_1.__assign({}, resourceItem.value), { destroy: function () {
25
25
  resourceItem.free();
26
26
  } });
27
27
  return wrapped;
@@ -40,7 +40,7 @@ function createResources(gl, state, stats, extensions) {
40
40
  function wrap(name, resource) {
41
41
  sets[name].add(resource);
42
42
  stats.resourceCounts[name] += 1;
43
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, resource), { destroy: function () {
43
+ return tslib_1.__assign(tslib_1.__assign({}, resource), { destroy: function () {
44
44
  resource.destroy();
45
45
  sets[name].delete(resource);
46
46
  stats.resourceCounts[name] -= 1;
@@ -9,6 +9,7 @@ exports.classifyFloatArray = exports.classifyIntArray = void 0;
9
9
  var tslib_1 = require("tslib");
10
10
  var array_encoder_1 = require("./array-encoder");
11
11
  var number_1 = require("../../../mol-util/number");
12
+ var type_helpers_1 = require("../../../mol-util/type-helpers");
12
13
  function classifyIntArray(xs) {
13
14
  return IntClassifier.classify(xs);
14
15
  }
@@ -59,7 +60,7 @@ var IntClassifier;
59
60
  for (var i = 0, n = data.length; i < n; i++) {
60
61
  incSize(info, size, data[i]);
61
62
  }
62
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, byteSize(size)), { kind: 'pack' });
63
+ return tslib_1.__assign(tslib_1.__assign({}, byteSize(size)), { kind: 'pack' });
63
64
  }
64
65
  function deltaSize(data, info) {
65
66
  var size = SizeInfo();
@@ -68,7 +69,7 @@ var IntClassifier;
68
69
  incSizeSigned(size, data[i] - prev);
69
70
  prev = data[i];
70
71
  }
71
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, byteSize(size)), { kind: 'delta' });
72
+ return tslib_1.__assign(tslib_1.__assign({}, byteSize(size)), { kind: 'delta' });
72
73
  }
73
74
  function rleSize(data, info) {
74
75
  var size = SizeInfo();
@@ -85,7 +86,7 @@ var IntClassifier;
85
86
  }
86
87
  incSize(info, size, data[data.length - 1]);
87
88
  incSize(info, size, run);
88
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, byteSize(size)), { kind: 'rle' });
89
+ return tslib_1.__assign(tslib_1.__assign({}, byteSize(size)), { kind: 'rle' });
89
90
  }
90
91
  function deltaRleSize(data, info) {
91
92
  var size = SizeInfo();
@@ -105,7 +106,7 @@ var IntClassifier;
105
106
  }
106
107
  incSizeSigned(size, prevValue);
107
108
  incSizeSigned(size, run);
108
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, byteSize(size)), { kind: 'delta-rle' });
109
+ return tslib_1.__assign(tslib_1.__assign({}, byteSize(size)), { kind: 'delta-rle' });
109
110
  }
110
111
  function getSize(data) {
111
112
  var info = getInfo(data);
@@ -124,8 +125,8 @@ var IntClassifier;
124
125
  case 'rle': return array_encoder_1.ArrayEncoding.by(array_encoder_1.ArrayEncoding.runLength).and(array_encoder_1.ArrayEncoding.integerPacking);
125
126
  case 'delta': return array_encoder_1.ArrayEncoding.by(array_encoder_1.ArrayEncoding.delta).and(array_encoder_1.ArrayEncoding.integerPacking);
126
127
  case 'delta-rle': return array_encoder_1.ArrayEncoding.by(array_encoder_1.ArrayEncoding.delta).and(array_encoder_1.ArrayEncoding.runLength).and(array_encoder_1.ArrayEncoding.integerPacking);
128
+ default: (0, type_helpers_1.assertUnreachable)(size);
127
129
  }
128
- throw new Error('should not happen :)');
129
130
  }
130
131
  IntClassifier.classify = classify;
131
132
  })(IntClassifier || (IntClassifier = {}));
@@ -159,8 +160,8 @@ var FloatClassifier;
159
160
  case 'rle': return fp.and(array_encoder_1.ArrayEncoding.runLength).and(array_encoder_1.ArrayEncoding.integerPacking);
160
161
  case 'delta': return fp.and(array_encoder_1.ArrayEncoding.delta).and(array_encoder_1.ArrayEncoding.integerPacking);
161
162
  case 'delta-rle': return fp.and(array_encoder_1.ArrayEncoding.delta).and(array_encoder_1.ArrayEncoding.runLength).and(array_encoder_1.ArrayEncoding.integerPacking);
163
+ default: (0, type_helpers_1.assertUnreachable)(size);
162
164
  }
163
- throw new Error('should not happen :)');
164
165
  }
165
166
  FloatClassifier.classify = classify;
166
167
  function getMultiplier(mantissaDigits) {