molstar 3.3.0 → 3.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (905) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -194
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/docking-viewer/viewport.js +1 -1
  8. package/lib/apps/viewer/app.d.ts +7 -6
  9. package/lib/apps/viewer/app.js +2 -0
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.html +106 -106
  12. package/lib/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  13. package/lib/cli/chem-comp-dict/create-saccharides.js +67 -0
  14. package/lib/cli/cif2bcif/converter.js +1 -1
  15. package/lib/cli/cif2bcif/index.js +4 -4
  16. package/lib/commonjs/apps/docking-viewer/index.js +12 -12
  17. package/lib/commonjs/apps/docking-viewer/viewport.js +33 -33
  18. package/lib/commonjs/apps/viewer/app.d.ts +7 -6
  19. package/lib/commonjs/apps/viewer/app.js +24 -22
  20. package/lib/commonjs/apps/viewer/index.js +1 -1
  21. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +6 -6
  22. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.d.ts +7 -0
  23. package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +69 -0
  24. package/lib/commonjs/cli/chem-comp-dict/create-table.js +8 -8
  25. package/lib/commonjs/cli/chem-comp-dict/util.js +17 -17
  26. package/lib/commonjs/cli/cif2bcif/converter.js +9 -9
  27. package/lib/commonjs/cli/cif2bcif/index.js +12 -12
  28. package/lib/commonjs/cli/cifschema/index.js +27 -27
  29. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -1
  30. package/lib/commonjs/cli/lipid-params/index.js +9 -9
  31. package/lib/commonjs/cli/state-docs/index.js +2 -2
  32. package/lib/commonjs/cli/structure-info/helpers.js +11 -11
  33. package/lib/commonjs/cli/structure-info/model.js +15 -15
  34. package/lib/commonjs/cli/structure-info/volume.js +9 -9
  35. package/lib/commonjs/examples/alpha-orbitals/controls.js +3 -3
  36. package/lib/commonjs/examples/alpha-orbitals/index.js +11 -11
  37. package/lib/commonjs/examples/basic-wrapper/controls.js +2 -2
  38. package/lib/commonjs/examples/basic-wrapper/index.js +22 -22
  39. package/lib/commonjs/examples/basic-wrapper/superposition.js +8 -8
  40. package/lib/commonjs/examples/domain-annotation-server/mapping.js +3 -3
  41. package/lib/commonjs/examples/domain-annotation-server/server.js +6 -6
  42. package/lib/commonjs/examples/domain-annotation-server/test.js +3 -3
  43. package/lib/commonjs/examples/lighting/index.js +6 -6
  44. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +2 -2
  45. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +4 -4
  46. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -26
  47. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +2 -2
  48. package/lib/commonjs/examples/task.js +15 -15
  49. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +2 -2
  50. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +1 -1
  51. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -2
  52. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -2
  53. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -2
  54. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +13 -13
  55. package/lib/commonjs/extensions/anvil/algorithm.js +13 -13
  56. package/lib/commonjs/extensions/anvil/behavior.js +14 -14
  57. package/lib/commonjs/extensions/anvil/prop.js +7 -7
  58. package/lib/commonjs/extensions/anvil/representation.js +5 -5
  59. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  60. package/lib/commonjs/extensions/cellpack/model.js +26 -24
  61. package/lib/commonjs/extensions/cellpack/preset.js +6 -6
  62. package/lib/commonjs/extensions/cellpack/property.js +3 -3
  63. package/lib/commonjs/extensions/cellpack/representation.js +2 -2
  64. package/lib/commonjs/extensions/cellpack/state.js +13 -13
  65. package/lib/commonjs/extensions/cellpack/util.js +14 -14
  66. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
  67. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  68. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  69. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +6 -8
  70. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +2 -2
  71. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +19 -20
  72. package/lib/commonjs/extensions/g3d/data.js +6 -6
  73. package/lib/commonjs/extensions/g3d/format.js +14 -14
  74. package/lib/commonjs/extensions/g3d/model.js +4 -4
  75. package/lib/commonjs/extensions/geo-export/controls.js +3 -3
  76. package/lib/commonjs/extensions/geo-export/glb-exporter.js +9 -9
  77. package/lib/commonjs/extensions/geo-export/index.js +1 -1
  78. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +12 -12
  79. package/lib/commonjs/extensions/geo-export/obj-exporter.js +7 -7
  80. package/lib/commonjs/extensions/geo-export/stl-exporter.js +7 -7
  81. package/lib/commonjs/extensions/geo-export/ui.js +7 -7
  82. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +9 -9
  83. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +9 -9
  84. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +4 -4
  85. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +4 -4
  86. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +5 -5
  87. package/lib/commonjs/extensions/model-export/export.js +4 -4
  88. package/lib/commonjs/extensions/model-export/index.js +1 -1
  89. package/lib/commonjs/extensions/model-export/ui.js +5 -5
  90. package/lib/commonjs/extensions/mp4-export/controls.js +5 -5
  91. package/lib/commonjs/extensions/mp4-export/encoder.js +4 -4
  92. package/lib/commonjs/extensions/mp4-export/index.js +1 -1
  93. package/lib/commonjs/extensions/mp4-export/ui.js +5 -5
  94. package/lib/commonjs/extensions/pdbe/preferred-assembly.js +2 -2
  95. package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +2 -2
  96. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  97. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +8 -8
  98. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +17 -17
  99. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +2 -2
  100. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +9 -9
  101. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +6 -6
  102. package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +9 -9
  103. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +17 -17
  104. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +15 -15
  105. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +22 -5
  106. package/lib/commonjs/extensions/zenodo/index.d.ts +7 -0
  107. package/lib/commonjs/extensions/zenodo/index.js +35 -0
  108. package/lib/commonjs/extensions/zenodo/ui.d.ts +61 -0
  109. package/lib/commonjs/extensions/zenodo/ui.js +306 -0
  110. package/lib/commonjs/mol-canvas3d/camera/stereo.js +1 -1
  111. package/lib/commonjs/mol-canvas3d/camera/util.js +1 -1
  112. package/lib/commonjs/mol-canvas3d/camera.js +2 -1
  113. package/lib/commonjs/mol-canvas3d/canvas3d.js +14 -14
  114. package/lib/commonjs/mol-canvas3d/controls/trackball.js +1 -1
  115. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +1 -1
  116. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +5 -5
  117. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +5 -5
  118. package/lib/commonjs/mol-canvas3d/helper/helper.js +1 -1
  119. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +2 -2
  120. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  121. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +3 -3
  122. package/lib/commonjs/mol-canvas3d/passes/image.js +1 -1
  123. package/lib/commonjs/mol-canvas3d/passes/marking.js +6 -6
  124. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +3 -3
  125. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -12
  126. package/lib/commonjs/mol-canvas3d/passes/smaa.js +9 -9
  127. package/lib/commonjs/mol-canvas3d/passes/wboit.js +3 -3
  128. package/lib/commonjs/mol-canvas3d/util.js +2 -2
  129. package/lib/commonjs/mol-data/db/column.js +2 -2
  130. package/lib/commonjs/mol-data/db/table.js +1 -1
  131. package/lib/commonjs/mol-data/db.js +1 -1
  132. package/lib/commonjs/mol-data/generic.js +3 -3
  133. package/lib/commonjs/mol-data/index.js +4 -4
  134. package/lib/commonjs/mol-data/int/interval.js +1 -1
  135. package/lib/commonjs/mol-data/int/ordered-set.js +1 -1
  136. package/lib/commonjs/mol-data/int/segmentation.js +1 -1
  137. package/lib/commonjs/mol-data/int/sorted-array.js +1 -1
  138. package/lib/commonjs/mol-data/util.js +7 -7
  139. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -2
  140. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -3
  141. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -3
  142. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +1 -1
  143. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -3
  144. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  145. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -3
  146. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  147. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  148. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -3
  149. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  150. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -3
  151. package/lib/commonjs/mol-geo/geometry/size-data.js +1 -1
  152. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -3
  153. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  154. package/lib/commonjs/mol-geo/geometry/text/text-builder.js +3 -2
  155. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -3
  156. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  157. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +10 -8
  158. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -3
  159. package/lib/commonjs/mol-geo/primitive/circle.js +1 -1
  160. package/lib/commonjs/mol-geo/primitive/cylinder.js +1 -1
  161. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  162. package/lib/commonjs/mol-geo/primitive/prism.js +1 -1
  163. package/lib/commonjs/mol-geo/primitive/star.js +1 -1
  164. package/lib/commonjs/mol-geo/primitive/torus.js +1 -1
  165. package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +9 -9
  166. package/lib/commonjs/mol-gl/compute/grid3d.js +5 -5
  167. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +3 -3
  168. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +3 -3
  169. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +3 -3
  170. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  171. package/lib/commonjs/mol-gl/compute/util.js +3 -3
  172. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  173. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  174. package/lib/commonjs/mol-gl/renderable/image.js +3 -3
  175. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  176. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  177. package/lib/commonjs/mol-gl/renderable/points.js +3 -3
  178. package/lib/commonjs/mol-gl/renderable/schema.js +1 -1
  179. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  180. package/lib/commonjs/mol-gl/renderable/text.js +3 -3
  181. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  182. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  183. package/lib/commonjs/mol-gl/shader-code.js +2 -1
  184. package/lib/commonjs/mol-gl/webgl/buffer.js +4 -5
  185. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  186. package/lib/commonjs/mol-gl/webgl/context.js +5 -5
  187. package/lib/commonjs/mol-gl/webgl/render-item.js +1 -1
  188. package/lib/commonjs/mol-gl/webgl/resources.js +2 -2
  189. package/lib/commonjs/mol-io/common/binary-cif/classifier.js +7 -6
  190. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +4 -3
  191. package/lib/commonjs/mol-io/common/binary-cif.js +3 -3
  192. package/lib/commonjs/mol-io/common/io-buffer.d.ts +206 -0
  193. package/lib/commonjs/mol-io/common/io-buffer.js +408 -0
  194. package/lib/commonjs/mol-io/common/netcdf/reader.d.ts +78 -0
  195. package/lib/commonjs/mol-io/common/netcdf/reader.js +459 -0
  196. package/lib/commonjs/mol-io/common/typed-array.js +2 -2
  197. package/lib/commonjs/mol-io/reader/ccp4/parser.js +8 -8
  198. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +3 -3
  199. package/lib/commonjs/mol-io/reader/cif/data-model.js +1 -1
  200. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  201. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +1 -1
  202. package/lib/commonjs/mol-io/reader/cif/schema.js +2 -2
  203. package/lib/commonjs/mol-io/reader/cif/text/parser.js +7 -7
  204. package/lib/commonjs/mol-io/reader/cif.js +1 -1
  205. package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +4 -4
  206. package/lib/commonjs/mol-io/reader/csv/data-model.js +1 -1
  207. package/lib/commonjs/mol-io/reader/csv/parser.js +7 -7
  208. package/lib/commonjs/mol-io/reader/cube/parser.js +2 -2
  209. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  210. package/lib/commonjs/mol-io/reader/dsn6/parser.js +8 -8
  211. package/lib/commonjs/mol-io/reader/dx/parser.js +4 -4
  212. package/lib/commonjs/mol-io/reader/gro/parser.js +6 -6
  213. package/lib/commonjs/mol-io/reader/mol/parser.js +2 -2
  214. package/lib/commonjs/mol-io/reader/mol2/parser.js +8 -8
  215. package/lib/commonjs/mol-io/reader/nctraj/parser.d.ts +18 -0
  216. package/lib/commonjs/mol-io/reader/nctraj/parser.js +101 -0
  217. package/lib/commonjs/mol-io/reader/obj/parser.js +4 -4
  218. package/lib/commonjs/mol-io/reader/pdb/parser.js +2 -2
  219. package/lib/commonjs/mol-io/reader/ply/parser.js +4 -4
  220. package/lib/commonjs/mol-io/reader/prmtop/parser.d.ts +58 -0
  221. package/lib/commonjs/mol-io/reader/prmtop/parser.js +172 -0
  222. package/lib/commonjs/mol-io/reader/psf/parser.js +8 -8
  223. package/lib/commonjs/mol-io/reader/sdf/parser.js +2 -2
  224. package/lib/commonjs/mol-io/reader/top/parser.d.ts +37 -0
  225. package/lib/commonjs/mol-io/reader/top/parser.js +303 -0
  226. package/lib/commonjs/mol-io/reader/trr/parser.d.ts +22 -0
  227. package/lib/commonjs/mol-io/reader/trr/parser.js +146 -0
  228. package/lib/commonjs/mol-io/reader/xtc/parser.js +4 -4
  229. package/lib/commonjs/mol-io/reader/xyz/parser.js +2 -2
  230. package/lib/commonjs/mol-io/writer/cif/encoder.js +3 -2
  231. package/lib/commonjs/mol-io/writer/cif.js +1 -1
  232. package/lib/commonjs/mol-io/writer/ligand-encoder.js +1 -1
  233. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  234. package/lib/commonjs/mol-io/writer/mol2/encoder.js +1 -1
  235. package/lib/commonjs/mol-math/geometry/boundary-helper.js +5 -5
  236. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  237. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  238. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
  239. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +6 -6
  240. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
  241. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +8 -8
  242. package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +2 -2
  243. package/lib/commonjs/mol-math/geometry/gaussian-density.js +5 -5
  244. package/lib/commonjs/mol-math/geometry/molecular-surface.d.ts +2 -1
  245. package/lib/commonjs/mol-math/geometry/molecular-surface.js +10 -10
  246. package/lib/commonjs/mol-math/geometry/primitives/box3d.js +2 -1
  247. package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +13 -7
  248. package/lib/commonjs/mol-math/geometry.js +8 -8
  249. package/lib/commonjs/mol-math/graph/inter-unit-graph.js +1 -1
  250. package/lib/commonjs/mol-math/graph.js +1 -1
  251. package/lib/commonjs/mol-math/linear-algebra.js +2 -2
  252. package/lib/commonjs/mol-model/sequence/alignment/alignment.js +1 -1
  253. package/lib/commonjs/mol-model/sequence/sequence.js +2 -1
  254. package/lib/commonjs/mol-model/sequence.js +1 -1
  255. package/lib/commonjs/mol-model/shape.js +1 -1
  256. package/lib/commonjs/mol-model/structure/coordinates.js +1 -1
  257. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  258. package/lib/commonjs/mol-model/structure/model/model.js +3 -3
  259. package/lib/commonjs/mol-model/structure/model/properties/atomic.js +3 -3
  260. package/lib/commonjs/mol-model/structure/model/properties/coarse.js +2 -2
  261. package/lib/commonjs/mol-model/structure/model/types/saccharides.d.ts +8 -0
  262. package/lib/commonjs/mol-model/structure/model/types/saccharides.js +11 -0
  263. package/lib/commonjs/mol-model/structure/model.js +3 -3
  264. package/lib/commonjs/mol-model/structure/query/queries/generators.js +2 -2
  265. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +2 -2
  266. package/lib/commonjs/mol-model/structure/query.js +6 -6
  267. package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
  268. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.d.ts +1 -1
  269. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +6 -9
  270. package/lib/commonjs/mol-model/structure/structure/element/element.js +5 -5
  271. package/lib/commonjs/mol-model/structure/structure/element.js +1 -1
  272. package/lib/commonjs/mol-model/structure/structure/structure.js +9 -6
  273. package/lib/commonjs/mol-model/structure/structure/symmetry.js +10 -10
  274. package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +2 -2
  275. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.d.ts +1 -0
  276. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +6 -4
  277. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -1
  278. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +3 -3
  279. package/lib/commonjs/mol-model/structure/structure/unit.js +5 -22
  280. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +1 -1
  281. package/lib/commonjs/mol-model/structure/structure.js +2 -2
  282. package/lib/commonjs/mol-model/structure/topology.js +1 -1
  283. package/lib/commonjs/mol-model/structure.js +6 -6
  284. package/lib/commonjs/mol-model/volume.js +2 -2
  285. package/lib/commonjs/mol-model-formats/shape/ply.js +7 -7
  286. package/lib/commonjs/mol-model-formats/structure/basic/atomic.d.ts +1 -1
  287. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -15
  288. package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +3 -3
  289. package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
  290. package/lib/commonjs/mol-model-formats/structure/basic/parser.d.ts +1 -1
  291. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +10 -10
  292. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
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  872. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.js +10 -1
  873. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +10 -1
  874. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -1
  875. package/lib/mol-repr/structure/visual/element-point.js +22 -3
  876. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
  877. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +1 -1
  878. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +10 -10
  879. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  880. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
  881. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -4
  882. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  883. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +5 -5
  884. package/lib/mol-repr/structure/visual/util/common.d.ts +1 -3
  885. package/lib/mol-repr/structure/visual/util/common.js +1 -24
  886. package/lib/mol-repr/structure/visual/util/element.js +36 -2
  887. package/lib/mol-repr/structure/visual/util/link.d.ts +13 -3
  888. package/lib/mol-repr/structure/visual/util/link.js +55 -6
  889. package/lib/mol-script/language/builder.d.ts +1 -0
  890. package/lib/mol-script/language/parser.js +7 -4
  891. package/lib/mol-task/util/scheduler.d.ts +2 -2
  892. package/lib/mol-task/util/scheduler.js +7 -7
  893. package/lib/mol-theme/color/hydrophobicity.js +2 -2
  894. package/lib/mol-util/data-source.js +2 -1
  895. package/lib/mol-util/file-info.d.ts +1 -3
  896. package/lib/mol-util/file-info.js +2 -10
  897. package/lib/mol-util/index.d.ts +1 -0
  898. package/lib/mol-util/index.js +5 -0
  899. package/lib/mol-util/zip/deflate.js +2 -1
  900. package/lib/mol-util/zip/zip.d.ts +7 -1
  901. package/lib/mol-util/zip/zip.js +5 -1
  902. package/lib/servers/model/config.d.ts +2 -2
  903. package/package.json +160 -160
  904. package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -64
  905. package/lib/mol-plugin-state/formats/structure.js +0 -61
@@ -102,7 +102,7 @@ var Canvas3DContext;
102
102
  };
103
103
  function fromCanvas(canvas, attribs) {
104
104
  if (attribs === void 0) { attribs = {}; }
105
- var a = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, Canvas3DContext.DefaultAttribs), attribs);
105
+ var a = tslib_1.__assign(tslib_1.__assign({}, Canvas3DContext.DefaultAttribs), attribs);
106
106
  var antialias = a.antialias, preserveDrawingBuffer = a.preserveDrawingBuffer, pixelScale = a.pixelScale, preferWebGl1 = a.preferWebGl1;
107
107
  var gl = (0, context_1.getGLContext)(canvas, {
108
108
  antialias: antialias,
@@ -190,7 +190,7 @@ var Canvas3D;
190
190
  function create(_a, props) {
191
191
  var webgl = _a.webgl, input = _a.input, passes = _a.passes, attribs = _a.attribs;
192
192
  if (props === void 0) { props = {}; }
193
- var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultCanvas3DParams), props);
193
+ var p = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultCanvas3DParams), props);
194
194
  var reprRenderObjects = new Map();
195
195
  var reprUpdatedSubscriptions = new Map();
196
196
  var reprCount = new rxjs_1.BehaviorSubject(0);
@@ -397,8 +397,8 @@ var Canvas3D;
397
397
  var duration = nextCameraResetDuration === undefined ? p.cameraResetDurationMs : nextCameraResetDuration;
398
398
  var focus_1 = camera.getFocus(center, radius);
399
399
  var next = typeof nextCameraResetSnapshot === 'function' ? nextCameraResetSnapshot(scene, camera) : nextCameraResetSnapshot;
400
- var snapshot = next ? (0, tslib_1.__assign)((0, tslib_1.__assign)({}, focus_1), next) : focus_1;
401
- camera.setState((0, tslib_1.__assign)((0, tslib_1.__assign)({}, snapshot), { radiusMax: scene.boundingSphere.radius }), duration);
400
+ var snapshot = next ? tslib_1.__assign(tslib_1.__assign({}, focus_1), next) : focus_1;
401
+ camera.setState(tslib_1.__assign(tslib_1.__assign({}, snapshot), { radiusMax: scene.boundingSphere.radius }), duration);
402
402
  }
403
403
  nextCameraResetDuration = void 0;
404
404
  nextCameraResetSnapshot = void 0;
@@ -522,8 +522,8 @@ var Canvas3D;
522
522
  return {
523
523
  camera: {
524
524
  mode: camera.state.mode,
525
- helper: (0, tslib_1.__assign)({}, helper.camera.props),
526
- stereo: (0, tslib_1.__assign)({}, p.camera.stereo),
525
+ helper: tslib_1.__assign({}, helper.camera.props),
526
+ stereo: tslib_1.__assign({}, p.camera.stereo),
527
527
  manualReset: !!p.camera.manualReset
528
528
  },
529
529
  cameraFog: camera.state.fog > 0
@@ -533,14 +533,14 @@ var Canvas3D;
533
533
  cameraResetDurationMs: p.cameraResetDurationMs,
534
534
  transparentBackground: p.transparentBackground,
535
535
  viewport: p.viewport,
536
- postprocessing: (0, tslib_1.__assign)({}, p.postprocessing),
537
- marking: (0, tslib_1.__assign)({}, p.marking),
538
- multiSample: (0, tslib_1.__assign)({}, p.multiSample),
539
- renderer: (0, tslib_1.__assign)({}, renderer.props),
540
- trackball: (0, tslib_1.__assign)({}, controls.props),
541
- interaction: (0, tslib_1.__assign)({}, interactionHelper.props),
542
- debug: (0, tslib_1.__assign)({}, helper.debug.props),
543
- handle: (0, tslib_1.__assign)({}, helper.handle.props),
536
+ postprocessing: tslib_1.__assign({}, p.postprocessing),
537
+ marking: tslib_1.__assign({}, p.marking),
538
+ multiSample: tslib_1.__assign({}, p.multiSample),
539
+ renderer: tslib_1.__assign({}, renderer.props),
540
+ trackball: tslib_1.__assign({}, controls.props),
541
+ interaction: tslib_1.__assign({}, interactionHelper.props),
542
+ debug: tslib_1.__assign({}, helper.debug.props),
543
+ handle: tslib_1.__assign({}, helper.handle.props),
544
544
  };
545
545
  }
546
546
  var contextRestoredSub = contextRestored.subscribe(function () {
@@ -71,7 +71,7 @@ var TrackballControls;
71
71
  (function (TrackballControls) {
72
72
  function create(input, camera, props) {
73
73
  if (props === void 0) { props = {}; }
74
- var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.TrackballControlsParams)), props);
74
+ var p = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.TrackballControlsParams)), props);
75
75
  var viewport = util_1.Viewport.clone(camera.viewport);
76
76
  var disposed = false;
77
77
  var dragSub = input.drag.subscribe(onDrag);
@@ -31,7 +31,7 @@ var BoundingSphereHelper = /** @class */ (function () {
31
31
  this.instancesData = new Map();
32
32
  this.scene = scene_1.Scene.create(ctx, render_item_1.GraphicsRenderVariantsBlended);
33
33
  this.parent = parent;
34
- this._props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.DebugHelperParams)), props);
34
+ this._props = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.DebugHelperParams)), props);
35
35
  }
36
36
  BoundingSphereHelper.prototype.update = function () {
37
37
  var _this = this;
@@ -7,7 +7,7 @@
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.isCameraAxesLoci = exports.CameraHelper = exports.CameraHelperParams = void 0;
9
9
  var tslib_1 = require("tslib");
10
- var immer_1 = (0, tslib_1.__importDefault)(require("immer"));
10
+ var immer_1 = tslib_1.__importDefault(require("immer"));
11
11
  var interval_1 = require("../../mol-data/int/interval");
12
12
  var cylinder_1 = require("../../mol-geo/geometry/mesh/builder/cylinder");
13
13
  var sphere_1 = require("../../mol-geo/geometry/mesh/builder/sphere");
@@ -25,7 +25,7 @@ var marker_action_1 = require("../../mol-util/marker-action");
25
25
  var param_definition_1 = require("../../mol-util/param-definition");
26
26
  var camera_1 = require("../camera");
27
27
  // TODO add scale line/grid
28
- var AxesParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { alpha: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.alpha), { defaultValue: 0.51 }), ignoreLight: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.ignoreLight), { defaultValue: true }), colorX: param_definition_1.ParamDefinition.Color(names_1.ColorNames.red, { isEssential: true }), colorY: param_definition_1.ParamDefinition.Color(names_1.ColorNames.green, { isEssential: true }), colorZ: param_definition_1.ParamDefinition.Color(names_1.ColorNames.blue, { isEssential: true }), scale: param_definition_1.ParamDefinition.Numeric(0.33, { min: 0.1, max: 2, step: 0.1 }, { isEssential: true }) });
28
+ var AxesParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), { alpha: tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params.alpha), { defaultValue: 0.51 }), ignoreLight: tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params.ignoreLight), { defaultValue: true }), colorX: param_definition_1.ParamDefinition.Color(names_1.ColorNames.red, { isEssential: true }), colorY: param_definition_1.ParamDefinition.Color(names_1.ColorNames.green, { isEssential: true }), colorZ: param_definition_1.ParamDefinition.Color(names_1.ColorNames.blue, { isEssential: true }), scale: param_definition_1.ParamDefinition.Numeric(0.33, { min: 0.1, max: 2, step: 0.1 }, { isEssential: true }) });
29
29
  exports.CameraHelperParams = {
30
30
  axes: param_definition_1.ParamDefinition.MappedStatic('on', {
31
31
  on: param_definition_1.ParamDefinition.Group(AxesParams),
@@ -34,8 +34,8 @@ exports.CameraHelperParams = {
34
34
  };
35
35
  var CameraHelper = /** @class */ (function () {
36
36
  function CameraHelper(webgl, props) {
37
- var _this = this;
38
37
  if (props === void 0) { props = {}; }
38
+ var _this = this;
39
39
  this.webgl = webgl;
40
40
  this.props = {
41
41
  axes: { name: 'off', params: {} }
@@ -69,13 +69,13 @@ var CameraHelper = /** @class */ (function () {
69
69
  p.axes.name = props.axes.name;
70
70
  if (props.axes.name === 'on') {
71
71
  _this.scene.clear();
72
- var params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props.axes.params), { scale: props.axes.params.scale * _this.webgl.pixelRatio });
72
+ var params = tslib_1.__assign(tslib_1.__assign({}, props.axes.params), { scale: props.axes.params.scale * _this.webgl.pixelRatio });
73
73
  _this.renderObject = createAxesRenderObject(params);
74
74
  _this.scene.add(_this.renderObject);
75
75
  _this.scene.commit();
76
76
  linear_algebra_1.Vec3.set(_this.camera.position, 0, 0, params.scale * 200);
77
77
  linear_algebra_1.Mat4.lookAt(_this.camera.view, _this.camera.position, _this.camera.target, _this.camera.up);
78
- p.axes.params = (0, tslib_1.__assign)({}, props.axes.params);
78
+ p.axes.params = tslib_1.__assign({}, props.axes.params);
79
79
  }
80
80
  }
81
81
  });
@@ -17,14 +17,14 @@ var cylinder_1 = require("../../mol-geo/geometry/mesh/builder/cylinder");
17
17
  var mol_util_1 = require("../../mol-util");
18
18
  var geometry_1 = require("../../mol-math/geometry");
19
19
  var param_definition_1 = require("../../mol-util/param-definition");
20
- var immer_1 = (0, tslib_1.__importDefault)(require("immer"));
20
+ var immer_1 = tslib_1.__importDefault(require("immer"));
21
21
  var shape_1 = require("../../mol-model/shape");
22
22
  var loci_1 = require("../../mol-model/loci");
23
23
  var marker_action_1 = require("../../mol-util/marker-action");
24
24
  var visual_1 = require("../../mol-repr/visual");
25
25
  var int_1 = require("../../mol-data/int");
26
26
  var render_item_1 = require("../../mol-gl/webgl/render-item");
27
- var HandleParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { alpha: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.alpha), { defaultValue: 1 }), ignoreLight: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.ignoreLight), { defaultValue: true }), colorX: param_definition_1.ParamDefinition.Color(names_1.ColorNames.red, { isEssential: true }), colorY: param_definition_1.ParamDefinition.Color(names_1.ColorNames.green, { isEssential: true }), colorZ: param_definition_1.ParamDefinition.Color(names_1.ColorNames.blue, { isEssential: true }), scale: param_definition_1.ParamDefinition.Numeric(0.33, { min: 0.1, max: 2, step: 0.1 }, { isEssential: true }) });
27
+ var HandleParams = tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params), { alpha: tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params.alpha), { defaultValue: 1 }), ignoreLight: tslib_1.__assign(tslib_1.__assign({}, mesh_1.Mesh.Params.ignoreLight), { defaultValue: true }), colorX: param_definition_1.ParamDefinition.Color(names_1.ColorNames.red, { isEssential: true }), colorY: param_definition_1.ParamDefinition.Color(names_1.ColorNames.green, { isEssential: true }), colorZ: param_definition_1.ParamDefinition.Color(names_1.ColorNames.blue, { isEssential: true }), scale: param_definition_1.ParamDefinition.Numeric(0.33, { min: 0.1, max: 2, step: 0.1 }, { isEssential: true }) });
28
28
  exports.HandleHelperParams = {
29
29
  handle: param_definition_1.ParamDefinition.MappedStatic('off', {
30
30
  on: param_definition_1.ParamDefinition.Group(HandleParams),
@@ -33,8 +33,8 @@ exports.HandleHelperParams = {
33
33
  };
34
34
  var HandleHelper = /** @class */ (function () {
35
35
  function HandleHelper(webgl, props) {
36
- var _this = this;
37
36
  if (props === void 0) { props = {}; }
37
+ var _this = this;
38
38
  this.webgl = webgl;
39
39
  this.props = {
40
40
  handle: { name: 'off', params: {} }
@@ -74,11 +74,11 @@ var HandleHelper = /** @class */ (function () {
74
74
  p.handle.name = props.handle.name;
75
75
  if (props.handle.name === 'on') {
76
76
  _this.scene.clear();
77
- var params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props.handle.params), { scale: props.handle.params.scale * _this.webgl.pixelRatio });
77
+ var params = tslib_1.__assign(tslib_1.__assign({}, props.handle.params), { scale: props.handle.params.scale * _this.webgl.pixelRatio });
78
78
  _this.renderObject = createHandleRenderObject(params);
79
79
  _this.scene.add(_this.renderObject);
80
80
  _this.scene.commit();
81
- p.handle.params = (0, tslib_1.__assign)({}, props.handle.params);
81
+ p.handle.params = tslib_1.__assign({}, props.handle.params);
82
82
  }
83
83
  }
84
84
  });
@@ -22,7 +22,7 @@ exports.DefaultHelperProps = param_definition_1.ParamDefinition.getDefaultValues
22
22
  var Helper = /** @class */ (function () {
23
23
  function Helper(webgl, scene, props) {
24
24
  if (props === void 0) { props = {}; }
25
- var p = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultHelperProps), props);
25
+ var p = tslib_1.__assign(tslib_1.__assign({}, exports.DefaultHelperProps), props);
26
26
  this.debug = new bounding_sphere_helper_1.BoundingSphereHelper(webgl, scene, p.debug);
27
27
  this.camera = new camera_helper_1.CameraHelper(webgl, p.camera.helper);
28
28
  this.handle = new handle_helper_1.HandleHelper(webgl, p.handle);
@@ -23,8 +23,8 @@ exports.Canvas3dInteractionHelperParams = {
23
23
  };
24
24
  var Canvas3dInteractionHelper = /** @class */ (function () {
25
25
  function Canvas3dInteractionHelper(canvasIdentify, lociGetter, input, camera, props) {
26
- var _this = this;
27
26
  if (props === void 0) { props = {}; }
27
+ var _this = this;
28
28
  this.canvasIdentify = canvasIdentify;
29
29
  this.lociGetter = lociGetter;
30
30
  this.input = input;
@@ -49,7 +49,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
49
49
  this.buttons = input_observer_1.ButtonsType.create(0);
50
50
  this.button = input_observer_1.ButtonsType.create(0);
51
51
  this.modifiers = input_observer_1.ModifiersKeys.None;
52
- this.props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.Canvas3dInteractionHelperParams)), props);
52
+ this.props = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.Canvas3dInteractionHelperParams)), props);
53
53
  input.drag.subscribe(function (_a) {
54
54
  var x = _a.x, y = _a.y, buttons = _a.buttons, button = _a.button, modifiers = _a.modifiers;
55
55
  _this.isInteracting = true;
@@ -23,11 +23,11 @@ var wboit_1 = require("./wboit");
23
23
  var postprocessing_1 = require("./postprocessing");
24
24
  var marking_1 = require("./marking");
25
25
  var util_2 = require("../../mol-gl/compute/util");
26
- var DepthMergeSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tDepthPrimitives: (0, schema_1.TextureSpec)('texture', 'depth', 'ushort', 'nearest'), tDepthVolumes: (0, schema_1.TextureSpec)('texture', 'depth', 'ushort', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), dPackedDepth: (0, schema_1.DefineSpec)('boolean') });
26
+ var DepthMergeSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tDepthPrimitives: (0, schema_1.TextureSpec)('texture', 'depth', 'ushort', 'nearest'), tDepthVolumes: (0, schema_1.TextureSpec)('texture', 'depth', 'ushort', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), dPackedDepth: (0, schema_1.DefineSpec)('boolean') });
27
27
  var DepthMergeShaderCode = (0, shader_code_1.ShaderCode)('depth-merge', quad_vert_1.quad_vert, depth_merge_frag_1.depthMerge_frag);
28
28
  function getDepthMergeRenderable(ctx, depthTexturePrimitives, depthTextureVolumes, packedDepth) {
29
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tDepthPrimitives: mol_util_1.ValueCell.create(depthTexturePrimitives), tDepthVolumes: mol_util_1.ValueCell.create(depthTextureVolumes), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(depthTexturePrimitives.getWidth(), depthTexturePrimitives.getHeight())), dPackedDepth: mol_util_1.ValueCell.create(packedDepth) });
30
- var schema = (0, tslib_1.__assign)({}, DepthMergeSchema);
29
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tDepthPrimitives: mol_util_1.ValueCell.create(depthTexturePrimitives), tDepthVolumes: mol_util_1.ValueCell.create(depthTextureVolumes), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(depthTexturePrimitives.getWidth(), depthTexturePrimitives.getHeight())), dPackedDepth: mol_util_1.ValueCell.create(packedDepth) });
30
+ var schema = tslib_1.__assign({}, DepthMergeSchema);
31
31
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', DepthMergeShaderCode, schema, values);
32
32
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
33
33
  }
@@ -81,13 +81,13 @@ var FxaaPass = /** @class */ (function () {
81
81
  }());
82
82
  exports.FxaaPass = FxaaPass;
83
83
  //
84
- var FxaaSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), dEdgeThresholdMin: (0, schema_1.DefineSpec)('number'), dEdgeThresholdMax: (0, schema_1.DefineSpec)('number'), dIterations: (0, schema_1.DefineSpec)('number'), dSubpixelQuality: (0, schema_1.DefineSpec)('number') });
84
+ var FxaaSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), dEdgeThresholdMin: (0, schema_1.DefineSpec)('number'), dEdgeThresholdMax: (0, schema_1.DefineSpec)('number'), dIterations: (0, schema_1.DefineSpec)('number'), dSubpixelQuality: (0, schema_1.DefineSpec)('number') });
85
85
  var FxaaShaderCode = (0, shader_code_1.ShaderCode)('fxaa', quad_vert_1.quad_vert, fxaa_frag_1.fxaa_frag);
86
86
  function getFxaaRenderable(ctx, colorTexture) {
87
87
  var width = colorTexture.getWidth();
88
88
  var height = colorTexture.getHeight();
89
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), dEdgeThresholdMin: mol_util_1.ValueCell.create(0.0312), dEdgeThresholdMax: mol_util_1.ValueCell.create(0.125), dIterations: mol_util_1.ValueCell.create(12), dSubpixelQuality: mol_util_1.ValueCell.create(0.3) });
90
- var schema = (0, tslib_1.__assign)({}, FxaaSchema);
89
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), dEdgeThresholdMin: mol_util_1.ValueCell.create(0.0312), dEdgeThresholdMax: mol_util_1.ValueCell.create(0.125), dIterations: mol_util_1.ValueCell.create(12), dSubpixelQuality: mol_util_1.ValueCell.create(0.3) });
90
+ var schema = tslib_1.__assign({}, FxaaSchema);
91
91
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', FxaaShaderCode, schema, values);
92
92
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
93
93
  }
@@ -32,7 +32,7 @@ var ImagePass = /** @class */ (function () {
32
32
  this._width = 0;
33
33
  this._height = 0;
34
34
  this._camera = new camera_1.Camera();
35
- this.props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.ImageParams)), props);
35
+ this.props = tslib_1.__assign(tslib_1.__assign({}, param_definition_1.ParamDefinition.getDefaultValues(exports.ImageParams)), props);
36
36
  this.drawPass = new draw_1.DrawPass(webgl, 128, 128, enableWboit);
37
37
  this.multiSamplePass = new multi_sample_1.MultiSamplePass(webgl, this.drawPass);
38
38
  this.multiSampleHelper = new multi_sample_1.MultiSampleHelper(this.multiSamplePass);
@@ -107,24 +107,24 @@ var MarkingPass = /** @class */ (function () {
107
107
  }());
108
108
  exports.MarkingPass = MarkingPass;
109
109
  //
110
- var EdgeSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tMaskTexture: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), dEdgeScale: (0, schema_1.DefineSpec)('number') });
110
+ var EdgeSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tMaskTexture: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), dEdgeScale: (0, schema_1.DefineSpec)('number') });
111
111
  var EdgeShaderCode = (0, shader_code_1.ShaderCode)('edge', quad_vert_1.quad_vert, edge_frag_1.edge_frag);
112
112
  function getEdgeRenderable(ctx, maskTexture) {
113
113
  var width = maskTexture.getWidth();
114
114
  var height = maskTexture.getHeight();
115
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tMaskTexture: mol_util_1.ValueCell.create(maskTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), dEdgeScale: mol_util_1.ValueCell.create(1) });
116
- var schema = (0, tslib_1.__assign)({}, EdgeSchema);
115
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tMaskTexture: mol_util_1.ValueCell.create(maskTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), dEdgeScale: mol_util_1.ValueCell.create(1) });
116
+ var schema = tslib_1.__assign({}, EdgeSchema);
117
117
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', EdgeShaderCode, schema, values);
118
118
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
119
119
  }
120
120
  //
121
- var OverlaySchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tEdgeTexture: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uHighlightEdgeColor: (0, schema_1.UniformSpec)('v3'), uSelectEdgeColor: (0, schema_1.UniformSpec)('v3'), uGhostEdgeStrength: (0, schema_1.UniformSpec)('f'), uInnerEdgeFactor: (0, schema_1.UniformSpec)('f') });
121
+ var OverlaySchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tEdgeTexture: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uHighlightEdgeColor: (0, schema_1.UniformSpec)('v3'), uSelectEdgeColor: (0, schema_1.UniformSpec)('v3'), uGhostEdgeStrength: (0, schema_1.UniformSpec)('f'), uInnerEdgeFactor: (0, schema_1.UniformSpec)('f') });
122
122
  var OverlayShaderCode = (0, shader_code_1.ShaderCode)('overlay', quad_vert_1.quad_vert, overlay_frag_1.overlay_frag);
123
123
  function getOverlayRenderable(ctx, edgeTexture) {
124
124
  var width = edgeTexture.getWidth();
125
125
  var height = edgeTexture.getHeight();
126
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tEdgeTexture: mol_util_1.ValueCell.create(edgeTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uHighlightEdgeColor: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec3)()), uSelectEdgeColor: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec3)()), uGhostEdgeStrength: mol_util_1.ValueCell.create(0), uInnerEdgeFactor: mol_util_1.ValueCell.create(0) });
127
- var schema = (0, tslib_1.__assign)({}, OverlaySchema);
126
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tEdgeTexture: mol_util_1.ValueCell.create(edgeTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uHighlightEdgeColor: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec3)()), uSelectEdgeColor: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec3)()), uGhostEdgeStrength: mol_util_1.ValueCell.create(0), uInnerEdgeFactor: mol_util_1.ValueCell.create(0) });
127
+ var schema = tslib_1.__assign({}, OverlaySchema);
128
128
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', OverlayShaderCode, schema, values);
129
129
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
130
130
  }
@@ -18,11 +18,11 @@ var param_definition_1 = require("../../mol-util/param-definition");
18
18
  var camera_1 = require("../../mol-canvas3d/camera");
19
19
  var quad_vert_1 = require("../../mol-gl/shader/quad.vert");
20
20
  var compose_frag_1 = require("../../mol-gl/shader/compose.frag");
21
- var ComposeSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), uWeight: (0, schema_1.UniformSpec)('f') });
21
+ var ComposeSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), uWeight: (0, schema_1.UniformSpec)('f') });
22
22
  var ComposeShaderCode = (0, shader_code_1.ShaderCode)('compose', quad_vert_1.quad_vert, compose_frag_1.compose_frag);
23
23
  function getComposeRenderable(ctx, colorTexture) {
24
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(colorTexture.getWidth(), colorTexture.getHeight())), uWeight: mol_util_1.ValueCell.create(1.0) });
25
- var schema = (0, tslib_1.__assign)({}, ComposeSchema);
24
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(colorTexture.getWidth(), colorTexture.getHeight())), uWeight: mol_util_1.ValueCell.create(1.0) });
25
+ var schema = tslib_1.__assign({}, ComposeSchema);
26
26
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', ComposeShaderCode, schema, values);
27
27
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
28
28
  }
@@ -24,26 +24,26 @@ var postprocessing_frag_1 = require("../../mol-gl/shader/postprocessing.frag");
24
24
  var color_1 = require("../../mol-util/color");
25
25
  var fxaa_1 = require("./fxaa");
26
26
  var smaa_1 = require("./smaa");
27
- var OutlinesSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), dOrthographic: (0, schema_1.DefineSpec)('number'), uNear: (0, schema_1.UniformSpec)('f'), uFar: (0, schema_1.UniformSpec)('f'), uMaxPossibleViewZDiff: (0, schema_1.UniformSpec)('f') });
27
+ var OutlinesSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), dOrthographic: (0, schema_1.DefineSpec)('number'), uNear: (0, schema_1.UniformSpec)('f'), uFar: (0, schema_1.UniformSpec)('f'), uMaxPossibleViewZDiff: (0, schema_1.UniformSpec)('f') });
28
28
  function getOutlinesRenderable(ctx, depthTexture) {
29
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tDepth: mol_util_1.ValueCell.create(depthTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(depthTexture.getWidth(), depthTexture.getHeight())), dOrthographic: mol_util_1.ValueCell.create(0), uNear: mol_util_1.ValueCell.create(1), uFar: mol_util_1.ValueCell.create(10000), uMaxPossibleViewZDiff: mol_util_1.ValueCell.create(0.5) });
30
- var schema = (0, tslib_1.__assign)({}, OutlinesSchema);
29
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tDepth: mol_util_1.ValueCell.create(depthTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(depthTexture.getWidth(), depthTexture.getHeight())), dOrthographic: mol_util_1.ValueCell.create(0), uNear: mol_util_1.ValueCell.create(1), uFar: mol_util_1.ValueCell.create(10000), uMaxPossibleViewZDiff: mol_util_1.ValueCell.create(0.5) });
30
+ var schema = tslib_1.__assign({}, OutlinesSchema);
31
31
  var shaderCode = (0, shader_code_1.ShaderCode)('outlines', quad_vert_1.quad_vert, outlines_frag_1.outlines_frag);
32
32
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
33
33
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
34
34
  }
35
- var SsaoSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uSamples: (0, schema_1.UniformSpec)('v3[]'), dNSamples: (0, schema_1.DefineSpec)('number'), uProjection: (0, schema_1.UniformSpec)('m4'), uInvProjection: (0, schema_1.UniformSpec)('m4'), uBounds: (0, schema_1.UniformSpec)('v4'), uTexSize: (0, schema_1.UniformSpec)('v2'), uRadius: (0, schema_1.UniformSpec)('f'), uBias: (0, schema_1.UniformSpec)('f') });
35
+ var SsaoSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uSamples: (0, schema_1.UniformSpec)('v3[]'), dNSamples: (0, schema_1.DefineSpec)('number'), uProjection: (0, schema_1.UniformSpec)('m4'), uInvProjection: (0, schema_1.UniformSpec)('m4'), uBounds: (0, schema_1.UniformSpec)('v4'), uTexSize: (0, schema_1.UniformSpec)('v2'), uRadius: (0, schema_1.UniformSpec)('f'), uBias: (0, schema_1.UniformSpec)('f') });
36
36
  function getSsaoRenderable(ctx, depthTexture) {
37
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tDepth: mol_util_1.ValueCell.create(depthTexture), uSamples: mol_util_1.ValueCell.create([0.0, 0.0, 1.0]), dNSamples: mol_util_1.ValueCell.create(32), uProjection: mol_util_1.ValueCell.create(linear_algebra_1.Mat4.identity()), uInvProjection: mol_util_1.ValueCell.create(linear_algebra_1.Mat4.identity()), uBounds: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(ctx.gl.drawingBufferWidth, ctx.gl.drawingBufferHeight)), uRadius: mol_util_1.ValueCell.create(8.0), uBias: mol_util_1.ValueCell.create(0.025) });
38
- var schema = (0, tslib_1.__assign)({}, SsaoSchema);
37
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tDepth: mol_util_1.ValueCell.create(depthTexture), uSamples: mol_util_1.ValueCell.create([0.0, 0.0, 1.0]), dNSamples: mol_util_1.ValueCell.create(32), uProjection: mol_util_1.ValueCell.create(linear_algebra_1.Mat4.identity()), uInvProjection: mol_util_1.ValueCell.create(linear_algebra_1.Mat4.identity()), uBounds: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(ctx.gl.drawingBufferWidth, ctx.gl.drawingBufferHeight)), uRadius: mol_util_1.ValueCell.create(8.0), uBias: mol_util_1.ValueCell.create(0.025) });
38
+ var schema = tslib_1.__assign({}, SsaoSchema);
39
39
  var shaderCode = (0, shader_code_1.ShaderCode)('ssao', quad_vert_1.quad_vert, ssao_frag_1.ssao_frag);
40
40
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
41
41
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
42
42
  }
43
- var SsaoBlurSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tSsaoDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), uKernel: (0, schema_1.UniformSpec)('f[]'), dOcclusionKernelSize: (0, schema_1.DefineSpec)('number'), uBlurDirectionX: (0, schema_1.UniformSpec)('f'), uBlurDirectionY: (0, schema_1.UniformSpec)('f'), uMaxPossibleViewZDiff: (0, schema_1.UniformSpec)('f'), uNear: (0, schema_1.UniformSpec)('f'), uFar: (0, schema_1.UniformSpec)('f'), uBounds: (0, schema_1.UniformSpec)('v4'), dOrthographic: (0, schema_1.DefineSpec)('number') });
43
+ var SsaoBlurSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tSsaoDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), uKernel: (0, schema_1.UniformSpec)('f[]'), dOcclusionKernelSize: (0, schema_1.DefineSpec)('number'), uBlurDirectionX: (0, schema_1.UniformSpec)('f'), uBlurDirectionY: (0, schema_1.UniformSpec)('f'), uMaxPossibleViewZDiff: (0, schema_1.UniformSpec)('f'), uNear: (0, schema_1.UniformSpec)('f'), uFar: (0, schema_1.UniformSpec)('f'), uBounds: (0, schema_1.UniformSpec)('v4'), dOrthographic: (0, schema_1.DefineSpec)('number') });
44
44
  function getSsaoBlurRenderable(ctx, ssaoDepthTexture, direction) {
45
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tSsaoDepth: mol_util_1.ValueCell.create(ssaoDepthTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(ssaoDepthTexture.getWidth(), ssaoDepthTexture.getHeight())), uKernel: mol_util_1.ValueCell.create([0.0]), dOcclusionKernelSize: mol_util_1.ValueCell.create(15), uBlurDirectionX: mol_util_1.ValueCell.create(direction === 'horizontal' ? 1 : 0), uBlurDirectionY: mol_util_1.ValueCell.create(direction === 'vertical' ? 1 : 0), uMaxPossibleViewZDiff: mol_util_1.ValueCell.create(0.5), uNear: mol_util_1.ValueCell.create(0.0), uFar: mol_util_1.ValueCell.create(10000.0), uBounds: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), dOrthographic: mol_util_1.ValueCell.create(0) });
46
- var schema = (0, tslib_1.__assign)({}, SsaoBlurSchema);
45
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tSsaoDepth: mol_util_1.ValueCell.create(ssaoDepthTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(ssaoDepthTexture.getWidth(), ssaoDepthTexture.getHeight())), uKernel: mol_util_1.ValueCell.create([0.0]), dOcclusionKernelSize: mol_util_1.ValueCell.create(15), uBlurDirectionX: mol_util_1.ValueCell.create(direction === 'horizontal' ? 1 : 0), uBlurDirectionY: mol_util_1.ValueCell.create(direction === 'vertical' ? 1 : 0), uMaxPossibleViewZDiff: mol_util_1.ValueCell.create(0.5), uNear: mol_util_1.ValueCell.create(0.0), uFar: mol_util_1.ValueCell.create(10000.0), uBounds: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), dOrthographic: mol_util_1.ValueCell.create(0) });
46
+ var schema = tslib_1.__assign({}, SsaoBlurSchema);
47
47
  var shaderCode = (0, shader_code_1.ShaderCode)('ssao_blur', quad_vert_1.quad_vert, ssao_blur_frag_1.ssaoBlur_frag);
48
48
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
49
49
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -68,10 +68,10 @@ function getSamples(vectorSamples, nSamples) {
68
68
  }
69
69
  return samples;
70
70
  }
71
- var PostprocessingSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tSsaoDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), tDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), tOutlines: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), dOrthographic: (0, schema_1.DefineSpec)('number'), uNear: (0, schema_1.UniformSpec)('f'), uFar: (0, schema_1.UniformSpec)('f'), uFogNear: (0, schema_1.UniformSpec)('f'), uFogFar: (0, schema_1.UniformSpec)('f'), uFogColor: (0, schema_1.UniformSpec)('v3'), uOutlineColor: (0, schema_1.UniformSpec)('v3'), uTransparentBackground: (0, schema_1.UniformSpec)('b'), uMaxPossibleViewZDiff: (0, schema_1.UniformSpec)('f'), dOcclusionEnable: (0, schema_1.DefineSpec)('boolean'), uOcclusionOffset: (0, schema_1.UniformSpec)('v2'), dOutlineEnable: (0, schema_1.DefineSpec)('boolean'), dOutlineScale: (0, schema_1.DefineSpec)('number'), uOutlineThreshold: (0, schema_1.UniformSpec)('f') });
71
+ var PostprocessingSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tSsaoDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), tDepth: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), tOutlines: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2'), dOrthographic: (0, schema_1.DefineSpec)('number'), uNear: (0, schema_1.UniformSpec)('f'), uFar: (0, schema_1.UniformSpec)('f'), uFogNear: (0, schema_1.UniformSpec)('f'), uFogFar: (0, schema_1.UniformSpec)('f'), uFogColor: (0, schema_1.UniformSpec)('v3'), uOutlineColor: (0, schema_1.UniformSpec)('v3'), uTransparentBackground: (0, schema_1.UniformSpec)('b'), uMaxPossibleViewZDiff: (0, schema_1.UniformSpec)('f'), dOcclusionEnable: (0, schema_1.DefineSpec)('boolean'), uOcclusionOffset: (0, schema_1.UniformSpec)('v2'), dOutlineEnable: (0, schema_1.DefineSpec)('boolean'), dOutlineScale: (0, schema_1.DefineSpec)('number'), uOutlineThreshold: (0, schema_1.UniformSpec)('f') });
72
72
  function getPostprocessingRenderable(ctx, colorTexture, depthTexture, outlinesTexture, ssaoDepthTexture) {
73
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tSsaoDepth: mol_util_1.ValueCell.create(ssaoDepthTexture), tColor: mol_util_1.ValueCell.create(colorTexture), tDepth: mol_util_1.ValueCell.create(depthTexture), tOutlines: mol_util_1.ValueCell.create(outlinesTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(colorTexture.getWidth(), colorTexture.getHeight())), dOrthographic: mol_util_1.ValueCell.create(0), uNear: mol_util_1.ValueCell.create(1), uFar: mol_util_1.ValueCell.create(10000), uFogNear: mol_util_1.ValueCell.create(10000), uFogFar: mol_util_1.ValueCell.create(10000), uFogColor: mol_util_1.ValueCell.create(linear_algebra_1.Vec3.create(1, 1, 1)), uOutlineColor: mol_util_1.ValueCell.create(linear_algebra_1.Vec3.create(0, 0, 0)), uTransparentBackground: mol_util_1.ValueCell.create(false), uMaxPossibleViewZDiff: mol_util_1.ValueCell.create(0.5), dOcclusionEnable: mol_util_1.ValueCell.create(true), uOcclusionOffset: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(0, 0)), dOutlineEnable: mol_util_1.ValueCell.create(false), dOutlineScale: mol_util_1.ValueCell.create(1), uOutlineThreshold: mol_util_1.ValueCell.create(0.33) });
74
- var schema = (0, tslib_1.__assign)({}, PostprocessingSchema);
73
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tSsaoDepth: mol_util_1.ValueCell.create(ssaoDepthTexture), tColor: mol_util_1.ValueCell.create(colorTexture), tDepth: mol_util_1.ValueCell.create(depthTexture), tOutlines: mol_util_1.ValueCell.create(outlinesTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(colorTexture.getWidth(), colorTexture.getHeight())), dOrthographic: mol_util_1.ValueCell.create(0), uNear: mol_util_1.ValueCell.create(1), uFar: mol_util_1.ValueCell.create(10000), uFogNear: mol_util_1.ValueCell.create(10000), uFogFar: mol_util_1.ValueCell.create(10000), uFogColor: mol_util_1.ValueCell.create(linear_algebra_1.Vec3.create(1, 1, 1)), uOutlineColor: mol_util_1.ValueCell.create(linear_algebra_1.Vec3.create(0, 0, 0)), uTransparentBackground: mol_util_1.ValueCell.create(false), uMaxPossibleViewZDiff: mol_util_1.ValueCell.create(0.5), dOcclusionEnable: mol_util_1.ValueCell.create(true), uOcclusionOffset: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(0, 0)), dOutlineEnable: mol_util_1.ValueCell.create(false), dOutlineScale: mol_util_1.ValueCell.create(1), uOutlineThreshold: mol_util_1.ValueCell.create(0.33) });
74
+ var schema = tslib_1.__assign({}, PostprocessingSchema);
75
75
  var shaderCode = (0, shader_code_1.ShaderCode)('postprocessing', quad_vert_1.quad_vert, postprocessing_frag_1.postprocessing_frag);
76
76
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', shaderCode, schema, values);
77
77
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
@@ -120,40 +120,40 @@ var SmaaPass = /** @class */ (function () {
120
120
  }());
121
121
  exports.SmaaPass = SmaaPass;
122
122
  //
123
- var EdgesSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uViewport: (0, schema_1.UniformSpec)('v4'), dEdgeThreshold: (0, schema_1.DefineSpec)('number') });
123
+ var EdgesSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uViewport: (0, schema_1.UniformSpec)('v4'), dEdgeThreshold: (0, schema_1.DefineSpec)('number') });
124
124
  var EdgesShaderCode = (0, shader_code_1.ShaderCode)('smaa-edges', edges_vert_1.edges_vert, edges_frag_1.edges_frag);
125
125
  function getEdgesRenderable(ctx, colorTexture) {
126
126
  var width = colorTexture.getWidth();
127
127
  var height = colorTexture.getHeight();
128
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uViewport: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), dEdgeThreshold: mol_util_1.ValueCell.create(0.1) });
129
- var schema = (0, tslib_1.__assign)({}, EdgesSchema);
128
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uViewport: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), dEdgeThreshold: mol_util_1.ValueCell.create(0.1) });
129
+ var schema = tslib_1.__assign({}, EdgesSchema);
130
130
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', EdgesShaderCode, schema, values);
131
131
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
132
132
  }
133
133
  //
134
- var WeightsSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tEdges: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), tArea: (0, schema_1.TextureSpec)('texture', 'rgb', 'ubyte', 'linear'), tSearch: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uViewport: (0, schema_1.UniformSpec)('v4'), dMaxSearchSteps: (0, schema_1.DefineSpec)('number') });
134
+ var WeightsSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tEdges: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), tArea: (0, schema_1.TextureSpec)('texture', 'rgb', 'ubyte', 'linear'), tSearch: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'nearest'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uViewport: (0, schema_1.UniformSpec)('v4'), dMaxSearchSteps: (0, schema_1.DefineSpec)('number') });
135
135
  var WeightsShaderCode = (0, shader_code_1.ShaderCode)('smaa-weights', weights_vert_1.weights_vert, weights_frag_1.weights_frag);
136
136
  function getWeightsRenderable(ctx, edgesTexture) {
137
137
  var width = edgesTexture.getWidth();
138
138
  var height = edgesTexture.getHeight();
139
139
  var areaTexture = (0, texture_1.createTexture)(ctx.gl, ctx.extensions, 'image-uint8', 'rgb', 'ubyte', 'linear');
140
140
  var searchTexture = (0, texture_1.createTexture)(ctx.gl, ctx.extensions, 'image-uint8', 'rgba', 'ubyte', 'nearest');
141
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tEdges: mol_util_1.ValueCell.create(edgesTexture), tArea: mol_util_1.ValueCell.create(areaTexture), tSearch: mol_util_1.ValueCell.create(searchTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uViewport: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), dMaxSearchSteps: mol_util_1.ValueCell.create(16) });
141
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tEdges: mol_util_1.ValueCell.create(edgesTexture), tArea: mol_util_1.ValueCell.create(areaTexture), tSearch: mol_util_1.ValueCell.create(searchTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uViewport: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()), dMaxSearchSteps: mol_util_1.ValueCell.create(16) });
142
142
  // Note: loading image textures requires `HTMLImageElement` to be available
143
143
  (0, texture_1.loadImageTexture)(getAreaTexture(), values.tArea, areaTexture);
144
144
  (0, texture_1.loadImageTexture)(getSearchTexture(), values.tSearch, searchTexture);
145
- var schema = (0, tslib_1.__assign)({}, WeightsSchema);
145
+ var schema = tslib_1.__assign({}, WeightsSchema);
146
146
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', WeightsShaderCode, schema, values);
147
147
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
148
148
  }
149
149
  //
150
- var BlendSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), tWeights: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uViewport: (0, schema_1.UniformSpec)('v4') });
150
+ var BlendSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tColor: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), tWeights: (0, schema_1.TextureSpec)('texture', 'rgba', 'ubyte', 'linear'), uTexSizeInv: (0, schema_1.UniformSpec)('v2'), uViewport: (0, schema_1.UniformSpec)('v4') });
151
151
  var BlendShaderCode = (0, shader_code_1.ShaderCode)('smaa-blend', blend_vert_1.blend_vert, blend_frag_1.blend_frag);
152
152
  function getBlendRenderable(ctx, colorTexture, weightsTexture) {
153
153
  var width = colorTexture.getWidth();
154
154
  var height = colorTexture.getHeight();
155
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), tWeights: mol_util_1.ValueCell.create(weightsTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uViewport: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()) });
156
- var schema = (0, tslib_1.__assign)({}, BlendSchema);
155
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tColor: mol_util_1.ValueCell.create(colorTexture), tWeights: mol_util_1.ValueCell.create(weightsTexture), uTexSizeInv: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(1 / width, 1 / height)), uViewport: mol_util_1.ValueCell.create((0, linear_algebra_1.Vec4)()) });
156
+ var schema = tslib_1.__assign({}, BlendSchema);
157
157
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', BlendShaderCode, schema, values);
158
158
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
159
159
  }
@@ -18,11 +18,11 @@ var quad_vert_1 = require("../../mol-gl/shader/quad.vert");
18
18
  var evaluate_wboit_frag_1 = require("../../mol-gl/shader/evaluate-wboit.frag");
19
19
  var linear_algebra_1 = require("../../mol-math/linear-algebra");
20
20
  var debug_1 = require("../../mol-util/debug");
21
- var EvaluateWboitSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadSchema), { tWboitA: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tWboitB: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2') });
21
+ var EvaluateWboitSchema = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadSchema), { tWboitA: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), tWboitB: (0, schema_1.TextureSpec)('texture', 'rgba', 'float', 'nearest'), uTexSize: (0, schema_1.UniformSpec)('v2') });
22
22
  var EvaluateWboitShaderCode = (0, shader_code_1.ShaderCode)('evaluate-wboit', quad_vert_1.quad_vert, evaluate_wboit_frag_1.evaluateWboit_frag);
23
23
  function getEvaluateWboitRenderable(ctx, wboitATexture, wboitBTexture) {
24
- var values = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, util_1.QuadValues), { tWboitA: mol_util_1.ValueCell.create(wboitATexture), tWboitB: mol_util_1.ValueCell.create(wboitBTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(wboitATexture.getWidth(), wboitATexture.getHeight())) });
25
- var schema = (0, tslib_1.__assign)({}, EvaluateWboitSchema);
24
+ var values = tslib_1.__assign(tslib_1.__assign({}, util_1.QuadValues), { tWboitA: mol_util_1.ValueCell.create(wboitATexture), tWboitB: mol_util_1.ValueCell.create(wboitBTexture), uTexSize: mol_util_1.ValueCell.create(linear_algebra_1.Vec2.create(wboitATexture.getWidth(), wboitATexture.getHeight())) });
25
+ var schema = tslib_1.__assign({}, EvaluateWboitSchema);
26
26
  var renderItem = (0, render_item_1.createComputeRenderItem)(ctx, 'triangles', EvaluateWboitShaderCode, schema, values);
27
27
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
28
28
  }
@@ -47,8 +47,8 @@ function _canvasToBlob(canvas, callback, type, quality) {
47
47
  callback(new Blob([a8], { type: type || 'image/png' }));
48
48
  }
49
49
  function canvasToBlob(canvas, type, quality) {
50
- return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
51
- return (0, tslib_1.__generator)(this, function (_a) {
50
+ return tslib_1.__awaiter(this, void 0, void 0, function () {
51
+ return tslib_1.__generator(this, function (_a) {
52
52
  return [2 /*return*/, new Promise(function (resolve, reject) {
53
53
  var callback = function (blob) {
54
54
  if (blob)
@@ -8,7 +8,7 @@
8
8
  Object.defineProperty(exports, "__esModule", { value: true });
9
9
  exports.Column = void 0;
10
10
  var tslib_1 = require("tslib");
11
- var ColumnHelpers = (0, tslib_1.__importStar)(require("./column-helpers"));
11
+ var ColumnHelpers = tslib_1.__importStar(require("./column-helpers"));
12
12
  var linear_algebra_1 = require("../../mol-math/linear-algebra");
13
13
  var number_parser_1 = require("../../mol-io/reader/common/text/number-parser");
14
14
  var Column;
@@ -55,7 +55,7 @@ var Column;
55
55
  Schema.Matrix = Matrix;
56
56
  function Aliased(t, defaultValue) {
57
57
  if (typeof defaultValue !== 'undefined')
58
- return (0, tslib_1.__assign)((0, tslib_1.__assign)({}, t), { T: defaultValue });
58
+ return tslib_1.__assign(tslib_1.__assign({}, t), { T: defaultValue });
59
59
  return t;
60
60
  }
61
61
  Schema.Aliased = Aliased;
@@ -39,7 +39,7 @@ var Table;
39
39
  function ofColumns(schema, columns) {
40
40
  var _columns = Object.keys(columns);
41
41
  var _rowCount = columns[_columns[0]].rowCount;
42
- return (0, tslib_1.__assign)({ _rowCount: _rowCount, _columns: _columns, _schema: schema }, columns);
42
+ return tslib_1.__assign({ _rowCount: _rowCount, _columns: _columns, _schema: schema }, columns);
43
43
  }
44
44
  Table.ofColumns = ofColumns;
45
45
  function ofPartialColumns(schema, partialColumns, rowCount) {
@@ -14,5 +14,5 @@ var table_1 = require("./db/table");
14
14
  Object.defineProperty(exports, "Table", { enumerable: true, get: function () { return table_1.Table; } });
15
15
  var column_1 = require("./db/column");
16
16
  Object.defineProperty(exports, "Column", { enumerable: true, get: function () { return column_1.Column; } });
17
- var ColumnHelpers = (0, tslib_1.__importStar)(require("./db/column-helpers"));
17
+ var ColumnHelpers = tslib_1.__importStar(require("./db/column-helpers"));
18
18
  exports.ColumnHelpers = ColumnHelpers;
@@ -6,6 +6,6 @@
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  var tslib_1 = require("tslib");
9
- (0, tslib_1.__exportStar)(require("./generic/hash-set"), exports);
10
- (0, tslib_1.__exportStar)(require("./generic/linked-list"), exports);
11
- (0, tslib_1.__exportStar)(require("./generic/unique-array"), exports);
9
+ tslib_1.__exportStar(require("./generic/hash-set"), exports);
10
+ tslib_1.__exportStar(require("./generic/linked-list"), exports);
11
+ tslib_1.__exportStar(require("./generic/unique-array"), exports);
@@ -7,13 +7,13 @@
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.Generic = exports.Util = exports.Iterator = exports.Int = exports.DB = void 0;
9
9
  var tslib_1 = require("tslib");
10
- var DB = (0, tslib_1.__importStar)(require("./db"));
10
+ var DB = tslib_1.__importStar(require("./db"));
11
11
  exports.DB = DB;
12
- var Int = (0, tslib_1.__importStar)(require("./int"));
12
+ var Int = tslib_1.__importStar(require("./int"));
13
13
  exports.Int = Int;
14
14
  var iterator_1 = require("./iterator");
15
15
  Object.defineProperty(exports, "Iterator", { enumerable: true, get: function () { return iterator_1.Iterator; } });
16
- var Util = (0, tslib_1.__importStar)(require("./util"));
16
+ var Util = tslib_1.__importStar(require("./util"));
17
17
  exports.Util = Util;
18
- var Generic = (0, tslib_1.__importStar)(require("./generic"));
18
+ var Generic = tslib_1.__importStar(require("./generic"));
19
19
  exports.Generic = Generic;
@@ -7,7 +7,7 @@
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.Interval = void 0;
9
9
  var tslib_1 = require("tslib");
10
- var Impl = (0, tslib_1.__importStar)(require("./impl/interval"));
10
+ var Impl = tslib_1.__importStar(require("./impl/interval"));
11
11
  var Interval;
12
12
  (function (Interval) {
13
13
  Interval.Empty = Impl.Empty;
@@ -7,7 +7,7 @@
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.OrderedSet = void 0;
9
9
  var tslib_1 = require("tslib");
10
- var Base = (0, tslib_1.__importStar)(require("./impl/ordered-set"));
10
+ var Base = tslib_1.__importStar(require("./impl/ordered-set"));
11
11
  var interval_1 = require("./interval");
12
12
  var OrderedSet;
13
13
  (function (OrderedSet) {
@@ -7,7 +7,7 @@
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.Segmentation = void 0;
9
9
  var tslib_1 = require("tslib");
10
- var Impl = (0, tslib_1.__importStar)(require("./impl/segmentation"));
10
+ var Impl = tslib_1.__importStar(require("./impl/segmentation"));
11
11
  var Segmentation;
12
12
  (function (Segmentation) {
13
13
  Segmentation.create = Impl.create;
@@ -7,7 +7,7 @@
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.SortedArray = void 0;
9
9
  var tslib_1 = require("tslib");
10
- var Impl = (0, tslib_1.__importStar)(require("./impl/sorted-array"));
10
+ var Impl = tslib_1.__importStar(require("./impl/sorted-array"));
11
11
  var SortedArray;
12
12
  (function (SortedArray) {
13
13
  SortedArray.Empty = Impl.Empty;
@@ -6,10 +6,10 @@
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
8
  var tslib_1 = require("tslib");
9
- (0, tslib_1.__exportStar)(require("./util/chunked-array"), exports);
10
- (0, tslib_1.__exportStar)(require("./util/buckets"), exports);
11
- (0, tslib_1.__exportStar)(require("./util/equivalence-classes"), exports);
12
- (0, tslib_1.__exportStar)(require("./util/hash-functions"), exports);
13
- (0, tslib_1.__exportStar)(require("./util/sort"), exports);
14
- (0, tslib_1.__exportStar)(require("./util/grouping"), exports);
15
- (0, tslib_1.__exportStar)(require("./util/array"), exports);
9
+ tslib_1.__exportStar(require("./util/chunked-array"), exports);
10
+ tslib_1.__exportStar(require("./util/buckets"), exports);
11
+ tslib_1.__exportStar(require("./util/equivalence-classes"), exports);
12
+ tslib_1.__exportStar(require("./util/hash-functions"), exports);
13
+ tslib_1.__exportStar(require("./util/sort"), exports);
14
+ tslib_1.__exportStar(require("./util/grouping"), exports);
15
+ tslib_1.__exportStar(require("./util/array"), exports);